Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168262.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_492, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25042
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Found at i:8402 original size:858 final size:864
Alignment explanation
Indices: 6678--10175 Score: 3885
Period size: 923 Copynumber: 3.9 Consensus size: 864
6668 GTGACCCGGT
* * * * ** * * *
6678 CGATCCTCGGCTTGCGCATCCTGCCACTCTGGCCGATTGAGCACCCGTACGCTCGTTTCATGGGT
1 CGATCCTCGACTTACGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * * **
6743 TGACTTAAGCATACGGAGTTCATTCCCAGT-G-TAAGATCGTAT-CG--GACCGAGGGTTGTGGG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTAGATAAAATTGGATCCGACAACCGAGGGTTGCAGG
* * * *
6803 TGCACATGCTGGGATCGGGCATGTGCTAGTGCCGA-ATATTTTTTCGCCCGGGGCACCATCGTTG
131 TGCACATGCTGGGCTCGGGCATGTACTGGTGCC-ATAT-TTTTTTCGCCCGAGGCACCA----T-
* * * * *
6867 GAGCAT-CGCCAGAGAACCTGACC-AGCGGCAT-TGAGGTTTCGACGATTGGGGGGCGGGGGGTA
189 --GCATACG--A-AGAACCTGACCGA-CGGCATCAG-GGCTCCGACGATTGGGGGGTGGGGGGTG
* *
6929 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCACTATCCCTCATCAA
247 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
6994 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAT
312 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
7059 TAAAGTGCCTGGAAA-GGGGACACTTTTTTCAAAT-GACCACAAAATCCTGTACACTTCGAGTTT
377 TAAAGTGTCT-AAAATGGGGACACTTTTTTCAAATAGATCACAAAATCCTGTACACTTTGAGTTT
* * * * *
7122 TTAGTTGAATTTTTTTGTGCATGCGAACAAAAAAACAACGATCACGTCTAG-CAAGTTTGGGGCC
441 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT-GCCAAGTTTGGGGCC
* * *
7186 AAAACTCCCTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
505 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
7251 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGATGGCTTAAGGGACCATTGTATCAATTT
570 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
7316 ACAAGCCATAAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCGACCTACCAC
635 ACAAGCCAT-AAAAATGGCATTGGCATAGCAGAAATATGAAGATGCGCCTAAACCCACCTACCAC
* * * * * * *
7381 CTTATCGATCCACGGCTTGCACATCTCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCACTCGT
699 CCTATCAATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGT-CGCTCGT
* * **
7446 TTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA-T-CAAATAGGACTGAGGGT
763 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGC-ACCA-GACTGAGGGT
* * * * *
7509 TACGACAGTAGGATTAGCAGCACGTAGGG-GGACCCGAC
826 TGCGGCAGCAGGATCAGCAGCACGCAGGGAGGACCCGAC
*
7547 CGATCCTCGACTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCTCGACTTACGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
7612 TGACTTAGGCATACGGAGTTCATTCCCAGT-G-TAAAATTGGA-CCG-C-ACCGAGGGTTGCAGG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTAGATAAAATTGGATCCGACAACCGAGGGTTGCAGG
* * *
7672 TGCACATGCTGGGCTCGGGTATGTGCTGGTGCCATATTTTTTTTGCCC-AGGGCACCAT-CAT-C
131 TGCACATGCTGGGCTCGGGCATGTACTGGTGCCATATTTTTTTCGCCCGA-GGCACCATGCATAC
* *
7734 GAAGAACCTGACCGACGGCATTC-GGGTTCC-AGCGATTGGGGGGATGGGGGGTGTCCGCACATG
195 GAAGAACCTGACCGACGGCA-TCAGGGCTCCGA-CGATTGGGGGG-TGGGGGGTGTGCGCACATG
* * * *
7797 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCATCATCAAACCTTGAGAA
257 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
7862 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCT
322 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
7927 AAAATGGGGACACTTTTTTCAAATAG-TCACAAAATCCTGTACA-TTTCGAGTTTTTAGCTGAAT
387 AAAATGGGGACACTTTTTTCAAATAGATCACAAAATCCTGTACACTTT-GAGTTTTTAGCTGAAT
7990 TTTTTTGTGCATGCCAACAAAAATA-AAGGGATCACATCTGCCAAGTTTGGGGCCAAAACTCCTT
451 TTTTTTGTGCATGCCAACAAAAATACAA-GGATCACATCTGCCAAGTTTGGGGCCAAAACTCCTT
* * * * ** * *
8054 CTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAATTTGTGAAAAATAGAAATCA
515 CTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
8119 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
580 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
8184 AAAATGGCATTGGCATAGCAGAAATATGAAGATGCGTCTAAACCCACCTACCACCCTATCAATCC
645 AAAATGGCATTGGCATAGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCAATCC
* *
8249 ACGACTTGCGCATCCCGCCTCTCTGG-CGGATGTAGTGCCCACCCGCTCGCTCGTTTCATCGGTT
710 ACGACTTGCGCATCCCGCCTCTCTGGCCGG-CGTAGTGCCCACCCG-TCGCTCGTTTCGTCGGTT
* *
8313 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGCACCAGACTGAGGGTTGTGGCAGCAGG
773 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGCACCAGACTGAGGGTTGCGGCAGCAGG
*
8378 ATCAGCAGCACGGAGGGAGGACCCGAC
838 ATCAGCAGCACGCAGGGAGGACCCGAC
* * * * *
8405 TGATCCCCGGCTTACACATCCTACCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGT
1 CGATCCTCGACTTACGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
8470 TGACTTAGGCATACAGAGTTCATTCCCAGCTAAGCATGCAGAGTT-CATTCCCAGTCTAAGCATA
66 TGACTTAGGCATACGGAGTTCATTCCCAG-T-AG-AT--AAAATTGGA-T-CC-G----A-CA-A
* ** * *
8534 CGGAGTTCATTCCCAGTGTAAGATTGGACCAGACGGAGGGTTGCGGGTGCACATGCTGGGCTCAA
117 CCGAG--GGTT-GCA--G---G--T-G--C--AC--A----TGCTGG-G--C-T-C-GGG-----
* *
8599 CCATGTACTGGTGCTGCAT-TTTTTTTCACCCGAGGCACCATCACCAGAGCATCACCGGAGAACC
150 -CATGTACTGGTGC--CATATTTTTTTCGCCCGAGGCACCAT-------GCAT-A-CGAAGAACC
* * * * *
8663 TGACCTACGGCATCAAGGCTCCGATGATTGGAGGGGCAGGGGGGGTGTGCGCACATGATGTGTGA
203 TGACCGACGGCATCAGGGCTCCGACGATTGG-GGGG--TGGGGGGTGTGCGCACATGATGTGCGA
* ** *
8728 AGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGGCTCGAGCACTCACACC
265 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
8793 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
330 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
8858 GACACTTTTTTCAAATAG-TCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
395 GACACTTTTTTCAAATAGATCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* **
8922 CATGCCTACAAAAATACAAGGATCACATCTGCCAAGTTTGGGGTGAAAACTCCTTCTGAAAAAAT
460 CATGCCAACAAAAATACAAGGATCACATCTGCCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * **
8987 TTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTG
525 TTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
9052 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
590 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
9117 TGGCATAGCAGAAATATAAAGATGCACCTAAACCCACCTACCACCCTATCAATCCACGACTTGCG
655 TGGCATAGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCG
** * *
9182 CATCCCGCCTCTCTGGCCGATGTAATGCCCACCCGCTCGCTTGTTTC-TCCGGTTGGCTTAGGCA
720 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCG-TCGCTCGTTTCGT-CGGTTGGCTTAGGCA
* *
9246 TA-GGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCAGCAGCA
783 TACGGAGTTCATTCCCAGTCTAAGATTGCACCAGACTGAGGGTTGCGGCAGCAGGATCAGCAGCA
* * *
9310 TGCAGGGAGGACCTGGC
848 CGCAGGGAGGACCCGAC
* * * * *
9327 CGATCC-CCAGCTTACGCATCCTGCCCCTCTGGTCGGCT-AGGCGCCCGCATGATCGTTTCGTGG
1 CGATCCTCGA-CTTACGCATCCTACCCCTCTGGCCGGCTGA-GCGCCCGCACGCTCGTTTCGTGG
9390 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGCATACAGAGTTCAGTCCCAGTGTAAGAT
64 GTTGACTTAGGCATACGGAGTTCATTCCCAGT---AG-ATA-A-A----A-T-----TG---GAT
* * * * *
9455 CAGACCAGACGGAGGGTTGCGGGTGCACATGCTGGGCTCGGCCATGTACTGGTGTCATAGTTTTT
110 CCGA-CA-ACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTACTGGTGCCATA-TTTTT
* * *
9520 TTCCCCCGAGGCACCATCACCGGAGCATTACTGGAGAACCTGACCTG-CGGCATCAGGGCTCCGG
172 TTCGCCCGAGGCACCAT-------GCA-TAC-GAAGAACCTGACC-GACGGCATCAGGGCTCCGA
*
9584 TGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
227 CGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* ** *
9649 TGCCCCCTATCCCTCATTGCAAGGCTTGAGAACTCACACCCCCTTAAAGAGCATTTGGAGATTTT
292 GGCCCCCTATCCCTCA-T-CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT-GAGATTTT
* * *
9714 AACAGGTTTTGCTAG-CATTGCGCCATTAAAGGTGTCTGAAATGCGGGACA-TTTTTTCAAA-AT
354 -ACAGG-TTTGCT-GCCAGT-AGCCATTAAA-GTGTCTAAAATG-GGGACACTTTTTTCAAATA-
* * **
9776 GATCACAAAAT-CTGTTCACTTTGAGTTTTTAGTTGAATTTTTTTTGTGCATGTGAACAAAAATA
412 GATCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATA
* ** *
9840 CAAGGATCTCATCTATCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCCCAA
476 CAAGGATCACATCTGCCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAA
9905 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
541 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* * * *
9970 GAAGGCTTAAGGGACCATTATATGTATTTACAAGCCATAAAAATGGCATTGGCATGGCTGAAATA
606 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAGCAGAAATA
** * * *
10035 TGAAGATATGCCTAAACCCACCTACCACCCTATCGAA-CCACGGCTTGTGCATCTCGCCTCTCTG
671 TGAAGATGCGCCTAAACCCACCTACCACCCTATC-AATCCACGACTTGCGCATCCCGCCTCTCTG
** * * *
10099 GCCGGCGTAGTGCCTGCCCGTCGGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCTC
735 GCCGGCGTAGTGCCCACCCGTC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
10164 AGTCTAAGATTG
799 AGTCTAAGATTG
10176 GATCAGACCA
Statistics
Matches: 2288, Mismatches: 207, Indels: 234
0.84 0.08 0.09
Matches are distributed among these distances:
856 4 0.00
857 215 0.09
858 463 0.20
859 3 0.00
860 5 0.00
861 1 0.00
863 1 0.00
864 2 0.00
865 4 0.00
867 2 0.00
868 19 0.01
869 141 0.06
874 1 0.00
876 5 0.00
878 2 0.00
879 2 0.00
881 1 0.00
884 1 0.00
886 1 0.00
887 1 0.00
889 1 0.00
891 2 0.00
893 1 0.00
894 66 0.03
895 4 0.00
896 40 0.02
897 91 0.04
898 7 0.00
899 9 0.00
900 12 0.01
901 49 0.02
902 311 0.14
903 31 0.01
904 1 0.00
905 1 0.00
906 1 0.00
908 1 0.00
909 16 0.01
910 18 0.01
911 4 0.00
913 1 0.00
915 2 0.00
917 1 0.00
918 3 0.00
919 1 0.00
920 3 0.00
921 34 0.01
922 159 0.07
923 518 0.23
924 7 0.00
925 1 0.00
927 1 0.00
928 3 0.00
930 9 0.00
933 1 0.00
934 1 0.00
935 1 0.00
936 1 0.00
937 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
CGATCCTCGACTTACGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTAGATAAAATTGGATCCGACAACCGAGGGTTGCAGG
TGCACATGCTGGGCTCGGGCATGTACTGGTGCCATATTTTTTTCGCCCGAGGCACCATGCATACG
AAGAACCTGACCGACGGCATCAGGGCTCCGACGATTGGGGGGTGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
TGGGGACACTTTTTTCAAATAGATCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACATCTGCCAAGTTTGGGGCCAAAACTCCTTCTGAAA
AAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATAGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCAATCCACGACT
TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGTCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTGCACCAGACTGAGGGTTGCGGCAGCAGGATCAGCAG
CACGCAGGGAGGACCCGAC
Found at i:8539 original size:26 final size:26
Alignment explanation
Indices: 8478--8555 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
8468 GTTGACTTAG
8478 GCATACAGAGTTCATTCCCAG-CTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
8503 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
8529 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
8555 G
1 G
8556 ATTGGACCAG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
25 20 0.42
26 28 0.58
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11010 original size:11 final size:11
Alignment explanation
Indices: 10994--11026 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
10984 CCTGGGGCAC
10994 CATCGTCGGAG
1 CATCGTCGGAG
11005 CATCGTCGGAG
1 CATCGTCGGAG
11016 CATCGTCGGAG
1 CATCGTCGGAG
11027 AATCTGGCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:13307 original size:897 final size:897
Alignment explanation
Indices: 10191--16956 Score: 8292
Period size: 895 Copynumber: 7.7 Consensus size: 897
10181 GACCAAGGGT
* ** *
10191 TGTGCAATGGGTGCTATTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAAC
1 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
10256 TCACACCCCCTTAAAGAAG-ATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
66 TCACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
10320 GAAATAGGGACAATTTTTTCAAATGGTCATAAAATCCTGTACACTTCGAGTTTCTAGCTGAATTT
130 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
10385 TTTTGTGCATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTACTTCTG
195 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCTG
* * * ** * *
10450 AAAAAAATTTT-AAAAAAT-CTTGAACTGTAAAAAGGTCCAAAAATCATGAAAAAAAGAAAACAA
260 -AAAAAATTTTAAAAAAATCCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGA
*
10513 GTCGTCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
324 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
10578 AAATGGCATTTGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
389 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
10643 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
454 CGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
**
10708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATTGAGGG-T-T-GC-------
519 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGTAGGA
* *
10762 -C-ACAGCATGCAGTGGGGGA-CCTGATCGATCCCCAGCTTGCGCATCCTACCCCTCTGGTCGGC
584 TCGACAGCACGCAG-GGGGGACCCTGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGTCGGC
*** * *
10824 TGCA-TTACCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACTGG-GTTCATTCCCGGTCTAAG
648 TG-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAAG
* * * * *
10887 CATACTGAGTTCATTCTCAGTGCAAGATCGGATCAGACCGATGGTTGCGGGTGCACATGCTGGGC
711 CATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGC
* * *
10952 TTGGGCATGTGCTAGTGCC-AGATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCGTCGGAG
776 TCGGGCATGTGCTGGTGCCGA-ATTTTTTTTCTCC-GGGGCACCA---T-----C-TC-T-GGAG
* * * * **
11016 CATCGTCGGAGAATCTGGCCGACGGCATTGGGGTTCTGGTGATTGGCGGGGCGGGGGGTGTGCGC
828 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGG-GGGGCGGGGGGTGTGCGC
11081 ACATGA
892 ACATGA
* *
11087 TGTGCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCC-CATCAAACCTTGAGAAC
1 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
11151 TCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
66 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
11216 GAATGGGGACAATTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTT
131 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
11281 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAGT-CTCTCTG
196 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACT-TCTG
* * *
11345 AAAAAGTTTTAAAAAAATCC-CGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
260 AAAAAATTTTAAAAAAATCCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
*
11409 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
11474 AATGGCATTGGCATGGTAGAAATATGAAGATGTGTCTAAACCCGCCTACCACCCTATCGATCCAC
390 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * * *
11539 GGCTGGTGCATCCCGTCTCTGTGGCCGGCATAGTGCCCGCCCACCCGCTTGTTTCGTCGGTTGGC
455 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
11604 TTAGGCATACGGAGTTCATTCCCAATTTAAGAT-TGAATCAAACTGAGGGTTTTGGCAGTAGGAT
520 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGTAGGAT
* * * * *
11668 CGACAGCACACAGTGGGGGA-CCTGACCGATCCCCGGCTTGTGCATCCTTCTCCTCTGGTCGGCT
585 CGACAGCACGCAG-GGGGGACCCTGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGTCGGCT
** *
11732 GAGCGCCCATACGCTCG-TTCTGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTC-AAGCA
649 GAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * ** * *
11795 TACGGAGTTCATTCCCAGTGTAAGATCGAATCAGACCGAGGTTTTTGGGTGCACATGCGGGGCTT
713 TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * * ** *
11860 GGGCATGTGCTGGTGCCGTATTTTTTTTTTCTCGGGGCACCATCACCGGAGCATCACCTGAGAAC
778 GGGCATGTGCTGGTGCCGAATTTTTTTTCTC-CGGGGCACCATCTCTGGAGCATCGTCGGAGAAC
* * * *
11925 CAGACCGACGGCATTGAGGTTCTGACGATTGGGGGG-GCGGGGGTGTGCGCACATGA
842 CTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCG-GGGGGTGTGCGCACATGA
* * * *
11981 TGTGCAATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAAC
1 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
12046 TCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TGTTTG
66 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
12110 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTT
131 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
12175 TGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACTACTTTTGA
196 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCTGA
* * *
12239 AAAAATTTTAAAAAAATCC-CGAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGT
261 AAAAATTTTAAAAAAATCCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
12303 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
326 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
12368 ATGGCATTGGCAGGGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACG
391 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
12433 GCTTGCGCATCCCGCCTCTATGGCCAATGTAGTGCCTGCCCGTCCGCTCGTTTCCTCGGTTGGCT
456 GCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * ** * *
12498 TAGGGATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTACGGTAGTAGGATT
521 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGTAGGATC
* * * * *
12562 GGCAGCACGCAGGGAGGGACCCAG-TCAATCCCTGGCTTGTGCATCCTACCCCTCTGGTCGGCTG
586 GACAGCACGCAGGG-GGGACCCTGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGTCGGCTG
* * * * * *
12626 AGCGCCCGTATGCTCGTTTCATCGGTTGACTTAGGCATACAGAGTTCATT-CCAATCTAAGCATA
650 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
** * * *
12690 TAGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGA
715 CGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGG
* *
12755 GCATGTGCTGGTGCCGTAATTTTTTTTCATCCGGGGCACTATCTCTGGAGCATCGTCGGAGAACT
780 GCATGTGCTGGTGCCG-AATTTTTTTTC-TCCGGGGCACCATCTCTGGAGCATCGTCGGAGAACC
* *
12820 TGATCGACGGCATTGGGGTTCCGACGATTGTGGGGGCCGGGGGGGTGTGCGCACATGA
843 TGACCGGCGGCATTGGGGTTCCGACGATTG-GGGGG-C-GGGGGGTGTGCGCACATGA
* ** * *
12878 TGTACGATGGGTGCTAATACTTGGCCCCTATATTGGCCCCCTATCCC-CATCAAACCTCAAGAAC
1 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * **
12942 TCACACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCCGCCAGTAGCGTTTAAA-TGTCTG
66 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
13006 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTTT
131 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
13071 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTACTTTTGA
196 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCTGA
* * * *
13136 AAGAATTTTAAAAAAA-CCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
261 AAAAATTTTAAAAAAATCCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
13200 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
326 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
13265 ATGGCGTTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCAATCACCCTATCGATCCACA
391 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * *
13330 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACTCGTCTGCTCGTTTCATCGGTTGGCT
456 GCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** * * *** * ** * *
13395 TAGGCATACGGAGTTCATTCTTAGTCTAGGAT-TGAATGGGACTGAGGGTTGCAGCAGCAGGATT
521 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGTAGGATC
** * * * *
13459 GGTAGCACGCAGGGGGGACCC-GGTCGATCCCCGACTTGCGCATCCTACCCCTCTGGCCGACTGA
586 GACAGCACGCAGGGGGGACCCTGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGTCGGCTGA
* * * * *
13523 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATCCGGAGCTCATTCCAAGTCCAAGCATAC
651 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *** * *
13588 GGAGTTCATTCCCAGTGTAAGATTGGACCAGACCAAGGGTTGTGGACACACTTGCTAGGCTCGGG
716 GGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGG
* * * * *
13653 CATGTGCTGGTACCG-CTTTTTTTTCATCCGGGGCACCAT-TGTCGAAGCATCGTCAGAGAACCT
781 CATGTGCTGGTGCCGAATTTTTTTTC-TCCGGGGCACCATCTCT-GGAGCATCGTCGGAGAACCT
*
13716 GACCGGTGGCATTGGGGTTCC-AGCGATT-------GGGGGGTGTGCGCACATGA
844 GACCGGCGGCATTGGGGTTCCGA-CGATTGGGGGGCGGGGGGTGTGCGCACATGA
* * * *
13763 AGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGTCCCCTATCCTTGATCAAACCTCGAGAAC
1 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
13827 TCACACCCCC-----GAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTG
66 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
13887 AAATGGGGACACTTTTTTTAAATGGTCACAAAATCCTGTACACTTCGAGTTTCTAGCTGAATTTT
131 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
13952 TTTGTGCATGCCAACAAAAATACAAGGATCACATTTACCAAGTTTGGGGGCAAAACTCCTTCTAA
196 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCTGA
* * * * *
14017 AAAAATTTTAAAAAAAT-CTTGAACCGT-AAAA---TAAAAAATCGTGAAAAATAAAAAATGAGT
261 AAAAATTTTAAAAAAATCCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
* *
14077 CGTTTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAA
326 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
14142 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
391 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * ** * *
14207 GATTGCCCATCCCACCTCTTTGGCCGACGTAGTACCCGCTTGCCCGCTCATTTCGTCGGTTCGCT
456 GCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
14272 TAGGCATACGGAGTTCATTCCCAATCTAAGAT-GGAACC-GAACTGAGGGTTGCT-GCAGCAGGA
521 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAG-ACCGAGGGTTG-TGGCAGTAGGA
* * *
14334 TCAACAACACGCAGGGGGGACCCAG-TCGAT--CC--C---CG----C-A-----C--GT----T
584 TCGACAGCACGCAGGGGGGACCCTGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGTCGGCT
* *
14375 ---------CA------TTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT
649 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
14425 ACGGAGTTCATTCCTAGTGTAAGATCAGACCAGACCAAGGGTTGCGTGTGCACATGTTGGGCTTG
714 ACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCG
* * * *
14490 GGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGCACCA----T----CA-C--CGGAGAACT
779 GGCATGTGCTGGTGCCGAATTTTTTTTC-TCCGGGGCACCATCTCTGGAGCATCGTCGGAGAACC
* **
14544 TGATCGGTAGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGA
843 TGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGA
14599 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
1 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
14664 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTGCTG-CAGTAGCCATTAAA-TGTCT
66 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
14727 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTAAATTT
130 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
14792 TTTTGTGCATACCAA-AAAAATTACAAGGATCACGCCTACCAAGTTTGGGGGCAAAACTACTTTT
195 TTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCT
* **
14856 GAAAAAATTTTAAAAAAATCC-CGAACCATAAAAAGTTTTGGAAATCATGAAAAATAGAAAACGA
259 GAAAAAATTTTAAAAAAATCCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGA
* * * *
14920 GTTGTCTTGCCATGAAACATCACATGAAGGCTTAATGGACCATTGTATGAATTTAAAAGCCATAA
324 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
14985 AAATGGCATTGGCAAGGTAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCA
389 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
15050 CGGCTTGCGCATGCTGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGATGG
454 CGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
15115 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ATCGGACTGAGGGTTGTGGCAATAGGA
519 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGTAGGA
* * * * * * * *
15179 TCGACAGCATGTAGGGGGGGACTC-GATCAATCCTCGGCTTGCACATCCTGCCCCTCTGGCCGGC
584 TCGACAGCACGCA-GGGGGGACCCTGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGTCGGC
* * ** *
15243 TGAGCGCCCGCACGTTCATTTTTTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
648 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
15308 TGCGGAGTTCATTCCCAGTGTAAGATTGGATCGGACCGAGGGTTGTGGGTGCACATGCTAGGCTC
713 TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * * * *
15373 GGGCAAGTGCTGGTGCC-ACTTTTTTTTTTGCCTGGGGCACCATCGCTGGAGCCTCATCGGAGAA
778 GGGCATGTGCTGGTGCCGAATTTTTTTTCT-CC-GGGGCACCATCTCTGGAGCATCGTCGGAGAA
* * * * * *
15437 CCTGATCGGCGGCATTGGGGTTTCGACGATTGGGGGGGGGGGGGGGTTGTGCACAAAAGA
841 CCTGACCGGCGGCATTGGGGTTCCGACGATT--GGGGGGCGGGGGG-TGTGCGCACATGA
* * *
15497 TGTGTGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
1 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
15562 TCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTG
66 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
15627 AAATAGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
131 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
15692 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGACAAAATTCCTTCTGA
196 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCTGA
* * * * *
15757 AAAAATTTTAAAAGAAT-CTCGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAAAAAATGAGT
261 AAAAATTTTAAAAAAATCCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
*
15821 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAA
326 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** *
15886 ATGGCATTGGCACAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
391 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** * * *
15951 GCTTGTGCATCTTGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCATTTCGTCGGTTGGCT
456 GCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
16016 TTGGCATACAGAGTTCATTCCTAGTCTAAGATCAG-ACCGGACCAAGGGTTGTGGTAGTAGGATC
521 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGTAGGATC
* * * * * * *
16080 GGCAACACGCAAGGGGGA-CCTGACCGATCCCCAGCTT--GCA--C-A--TC-CT-GT-GCCT--
586 GACAGCACGCAGGGGGGACCCTGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGTCGGCTGA
*
16132 -CTG---GC-CG---G---C------TG----A-GCATATGGAGTTCATTCCCAGTCTAAGCATA
651 GC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
16175 TGGAGTTCATTCCCAGAGTAAGATCAGACCAGACCGAGGGTTACGGGTGCACATGCTGGGCTCGG
715 CGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGG
* * *
16240 GCTTGTGCTCGTGCCGCATTCTTTTTTGC-CCGGGGCACCATCGTC-GGAGCATCGTCGGAGAAC
780 GCATGTGCTGGTGCCGAATT-TTTTTT-CTCCGGGGCACCATC-TCTGGAGCATCGTCGGAGAAC
* * *
16303 CTGACCGGCGGCATTGGGGTTTCGGCGATTGGGGGGGCGGGGGGTGTGCTCACATGA
842 CTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGTGTGCGCACATGA
* * *
16360 TGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAAC
1 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
16425 TCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
66 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
16490 AAATGGGGACACCTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTAAATTTT
131 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
16555 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGG
196 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCTGA
* * *
16620 AAAAATTTTAAAAAAATCCT-GAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGT
261 AAAAATTTTAAAAAAATCCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
* * **
16684 CGTCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGGACGATTGTATGAATTTACAAGTGATAAA
326 CGTCTTGCCATGAAACTTCACATGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAA
* *
16749 AATGGCATTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACTCTATCGATCCAC
390 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
16814 GGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCTTGTTTCGTCGGTTGGT
455 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
16879 TTAGCCATACGAAGTTCATTCCTAGTCTAAGA-CTGAACCAGACCGAGGGTTATGGCAGCAGGAT
520 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGTAGGAT
* *
16943 TGACAGCACACAGG
585 CGACAGCACGCAGG
16957 TATCAGGGGC
Statistics
Matches: 5126, Mismatches: 601, Indels: 318
0.85 0.10 0.05
Matches are distributed among these distances:
829 32 0.01
830 1 0.00
831 1 0.00
832 2 0.00
836 42 0.01
837 48 0.01
839 111 0.02
840 24 0.00
841 142 0.03
842 39 0.01
843 7 0.00
844 1 0.00
845 258 0.05
846 15 0.00
848 1 0.00
850 1 0.00
853 1 0.00
854 1 0.00
857 1 0.00
858 1 0.00
860 1 0.00
863 342 0.07
864 217 0.04
865 154 0.03
866 7 0.00
867 6 0.00
869 1 0.00
870 4 0.00
873 1 0.00
875 2 0.00
876 1 0.00
877 274 0.05
878 3 0.00
880 42 0.01
881 149 0.03
882 2 0.00
883 12 0.00
884 138 0.03
885 64 0.01
886 1 0.00
888 4 0.00
889 1 0.00
890 2 0.00
891 1 0.00
892 8 0.00
893 461 0.09
894 269 0.05
895 679 0.13
896 319 0.06
897 469 0.09
898 143 0.03
899 414 0.08
900 5 0.00
903 1 0.00
906 103 0.02
907 97 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (897 bp):
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCTGA
AAAAATTTTAAAAAAATCCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGTGGCAGTAGGATC
GACAGCACGCAGGGGGGACCCTGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGTCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGAATTTTTTTTCTCCGGGGCACCATCTCTGGAGCATCGTCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGA
Found at i:14433 original size:26 final size:26
Alignment explanation
Indices: 14397--14448 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14387 TGAGTTAGGC
14397 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
* *
14423 ATACGGAGTTCATTCCTAGTGTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
14449 TCAGACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:15315 original size:26 final size:26
Alignment explanation
Indices: 15279--15331 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15269 GTTGACGTAG
15279 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15305 GCATGCGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15331 G
1 G
15332 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16196 original size:26 final size:26
Alignment explanation
Indices: 16143--16196 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
16133 TGGCCGGCTG
*
16143 AGCATATGGAGTTCATTCCCAGTCTA
1 AGCATATGGAGTTCATTCCCAGACTA
*
16169 AGCATATGGAGTTCATTCCCAGAGTA
1 AGCATATGGAGTTCATTCCCAGACTA
16195 AG
1 AG
16197 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
AGCATATGGAGTTCATTCCCAGACTA
Found at i:22961 original size:26 final size:26
Alignment explanation
Indices: 22931--22983 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22921 GTTGACTTAG
*
22931 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
22957 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22983 G
1 G
22984 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23632 original size:26 final size:26
Alignment explanation
Indices: 23601--23653 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
23591 GTTGACTTAG
* *
23601 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGGTCATTCCCAGTCTAA
* *
23627 GCATACGAAGGTCATTCCTAGTGTAA
1 GCATACGAAGGTCATTCCCAGTCTAA
23653 G
1 G
23654 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGAAGGTCATTCCCAGTCTAA
Found at i:24531 original size:26 final size:26
Alignment explanation
Indices: 24495--24547 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24485 GTTGACTTAG
* *
24495 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
24521 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24547 G
1 G
24548 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.