Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168265.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_495, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24979
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Found at i:5546 original size:45 final size:45
Alignment explanation
Indices: 5367--6496 Score: 1735
Period size: 45 Copynumber: 25.0 Consensus size: 45
5357 GTGACACTGG
*
5367 CCTGGTGCGGGC--TTGCCTCGACCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
* *
5410 CCTGGTGC-GACGGTTGCCTCGACCACCATCGGCACACGCTGGG-
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
5453 CCTGGTGCGGTCGGTTGCCTCGA-CACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
5497 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCT-GGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
* *
5541 GCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACACTGGGC
1 -CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
5587 CCTGGTGCGGCAGGTTGCTGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
1 CC---T------GG-TGC-GGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
* * *
5643 CCTGGTACGGGCGCTTACCTCGAGCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
* *
5688 CCTGGTGC-GGCAGCTTGCCTCGAGCACCATCGGCACACACTGGGC
1 CCTGGTGCGGGC-GGTTGCCTCGAGCACCATCGGCACACGCTGGGC
* *
5733 CCTGGTGCGGTCGGTTGCCTCGAGCACCATCGGCACACGTTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
* *
5778 CCTGGTGCGGTCGGTTGCCTCGATCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
5823 CCTGGTGC-GACAGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGC-GGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
5868 CCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
5913 CCTGGTGCGGGCGCTTGCCTCGAGCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
5958 CCTGGTGC-GGCAGGTTGCCTCGAGCACCATCGGCACACGTTGGGC
1 CCTGGTGCGGGC-GGTTGCCTCGAGCACCATCGGCACACGCTGGGC
* * * * *
6003 CCTGGTACGGGAGCTTGCCTCGACCACCATCGACACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
6048 CCTGGTGC-GGCAGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGC-GGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
6093 CCTGGTGCGGCCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
6138 CCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
6183 CCTGGTGCGGGCGCTTGCCTCGAGCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
6228 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
6273 CCTGGTGC-GGCAGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGC-GGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
6318 CCTGGTGCGGTCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
6363 CCTGGTGCGGGCGGTTGCCTCTAGCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
6408 CCTGGTGC-GGCAAGTTGCCTCGAGCACCATCGGCACACGCTGGGC
1 CCTGGTGCGGGC-GGTTGCCTCGAGCACCATCGGCACACGCTGGGC
*
6453 CCTGGTGCGGGCGGGTGCCTCGAGCACCATCGGCACACGCTGGG
1 CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGG
6497 TGGTGGGTTT
Statistics
Matches: 1006, Mismatches: 51, Indels: 58
0.90 0.05 0.05
Matches are distributed among these distances:
42 2 0.00
43 36 0.04
44 84 0.08
45 820 0.82
46 18 0.02
47 2 0.00
48 1 0.00
53 1 0.00
54 2 0.00
55 3 0.00
56 37 0.04
ACGTcount: A:0.13, C:0.36, G:0.35, T:0.16
Consensus pattern (45 bp):
CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGC
Found at i:13020 original size:45 final size:44
Alignment explanation
Indices: 12951--13717 Score: 797
Period size: 45 Copynumber: 16.8 Consensus size: 44
12941 GCGTGACACG
* *
12951 GGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGC
1 GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
12995 GGCAGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
1 GGC-GGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
* *
13040 GGTCGGTTGCCTGGAGCACCATC-GCACAC-CTTGGCCCTGGTGC
1 GG-CGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
* *
13083 GGGCGCTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGTG
1 -GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTG-C
* * * * *
13129 GGCGCTTGCCTCGACCACTATCGGCACACGCCACTATCGGCACAC-GCTG-
1 GGCGGTTGCCTCGAGCACCATCGGCACACG---C--TGGGC-C-CTGGTGC
* ** * * * *
13178 GCCCTGG-TG-CGGGCGCTTGCC-TCGAC-CAC-CATCGGCACACGCTGG-GC
1 G-GC-GGTTGCCTCGAGC--ACCATCGGCACACGC-T-GG-GC-C-CTGGTGC
* * *
13225 -CCTGG-TGCGGTCGGTTGC-CTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
1 GGC-GGTTGC-CTC-G-AGCAC-C-------ATCGGCACACGCTGGGCCCTGGTGC
13278 GGCAGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
1 GGC-GGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
13323 GGTCGGTTGCCTCGAGCACCATCGGCACACGCT-GGCCCTGGTGC
1 GG-CGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
*
13367 GGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGC
1 -GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
*
13412 GGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGC
1 -GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
*
13457 AGGCGCTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
1 -GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
*
13502 GGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGC
1 -GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
*
13547 GGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGC
1 -GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
*
13592 GCCAGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
1 GGC-GGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
*
13637 GGGCGCTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
1 -GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
*
13682 GGCAGGTTGCCTCGAGCAACATCGGCACACGCTGGG
1 GGC-GGTTGCCTCGAGCACCATCGGCACACGCTGGG
13718 TGTCATGAGC
Statistics
Matches: 629, Mismatches: 48, Indels: 91
0.82 0.06 0.12
Matches are distributed among these distances:
43 31 0.05
44 64 0.10
45 461 0.73
46 10 0.02
47 2 0.00
48 2 0.00
49 9 0.01
50 11 0.02
51 6 0.01
52 8 0.01
53 5 0.01
54 6 0.01
55 9 0.01
56 4 0.01
57 1 0.00
ACGTcount: A:0.12, C:0.37, G:0.34, T:0.16
Consensus pattern (44 bp):
GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGC
Found at i:13164 original size:16 final size:16
Alignment explanation
Indices: 13143--13175 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
13133 CTTGCCTCGA
13143 CCACTATCGGCACACG
1 CCACTATCGGCACACG
13159 CCACTATCGGCACACG
1 CCACTATCGGCACACG
13175 C
1 C
13176 TGGCCCTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.45, G:0.18, T:0.12
Consensus pattern (16 bp):
CCACTATCGGCACACG
Found at i:13197 original size:60 final size:61
Alignment explanation
Indices: 13103--13219 Score: 209
Period size: 60 Copynumber: 1.9 Consensus size: 61
13093 CTCGAGCACC
* *
13103 ATCGGCACACGCTGGGCCCTGGTGTGGGCGCTTGCCTCGACCACTATCGGCACACGCCACT
1 ATCGGCACACGCTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCCACT
13164 ATCGGCACACGCT-GGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGC
1 ATCGGCACACGCTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGC
13220 TGGGCCCTGG
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
60 41 0.76
61 13 0.24
ACGTcount: A:0.15, C:0.39, G:0.30, T:0.16
Consensus pattern (61 bp):
ATCGGCACACGCTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCCACT
Found at i:13245 original size:105 final size:105
Alignment explanation
Indices: 13063--13264 Score: 334
Period size: 105 Copynumber: 1.9 Consensus size: 105
13053 GAGCACCATC
* *
13063 GCACACCTTGGCCCTGGTGCGGGCGCTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGT
1 GCACACCTTGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGC
*
13128 GGGCGCTTGCCTCGACCACTATCGGCACACGCCACTATCG
66 GGGCGCTTGCCTCGACCACCATCGGCACACGCCACTATCG
13168 GCACACGC-TGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTG
1 GCACAC-CTTGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTG
* * *
13232 CGGTCGGTTGCCTCGAGCACCATCGGCACACGC
65 CGGGCGCTTGCCTCGACCACCATCGGCACACGC
13265 TGGGCCCTGG
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
105 89 0.99
106 1 0.01
ACGTcount: A:0.13, C:0.39, G:0.32, T:0.17
Consensus pattern (105 bp):
GCACACCTTGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGC
GGGCGCTTGCCTCGACCACCATCGGCACACGCCACTATCG
Found at i:13316 original size:90 final size:90
Alignment explanation
Indices: 13164--13717 Score: 929
Period size: 90 Copynumber: 6.2 Consensus size: 90
13154 ACACGCCACT
13164 ATCGGCACACGCT-GGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCT
1 ATCGGCACACGCTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCT
*
13228 GGTGCGGTCGGTTGCCTCGAGCACC
66 GGTGCGGGCGGTTGCCTCGAGCACC
* *
13253 ATCGGCACACGCTGGGCCCTGGTGC-GGCAGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
1 ATCGGCACACGCTGGGCCCTGGTGCGGGC-GCTTGCCTCGACCACCATCGGCACACGCTGGGCCC
*
13317 TGGTGCGGTCGGTTGCCTCGAGCACC
65 TGGTGCGGGCGGTTGCCTCGAGCACC
*
13343 ATCGGCACACGCT-GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCT
1 ATCGGCACACGCTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCT
*
13407 GGTGCGGGCGGTTGCCTCGACCACC
66 GGTGCGGGCGGTTGCCTCGAGCACC
* *
13432 ATCGGCACACGCTGGGCCCTGGTGCAGGCGCTTGCCTCGAGCACCATCGGCACACGCTGGGCCCT
1 ATCGGCACACGCTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCT
*
13497 GGTGCGGGCGGTTGCCTCGACCACC
66 GGTGCGGGCGGTTGCCTCGAGCACC
*
13522 ATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCT
1 ATCGGCACACGCTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCT
*
13587 GGTGC-GCCAGGTTGCCTCGAGCACC
66 GGTGCGGGC-GGTTGCCTCGAGCACC
*
13612 ATCGGCACACGCTGGGCCCTGGTGCGGGCGCTTGCCTCGAGCACCATCGGCACACGCTGGGCCCT
1 ATCGGCACACGCTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCT
*
13677 GGTGC-GGCAGGTTGCCTCGAGCAAC
66 GGTGCGGGC-GGTTGCCTCGAGCACC
13702 ATCGGCACACGCTGGG
1 ATCGGCACACGCTGGG
13718 TGTCATGAGC
Statistics
Matches: 443, Mismatches: 17, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
89 100 0.23
90 343 0.77
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (90 bp):
ATCGGCACACGCTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCT
GGTGCGGGCGGTTGCCTCGAGCACC
Found at i:13559 original size:135 final size:134
Alignment explanation
Indices: 13159--13717 Score: 928
Period size: 135 Copynumber: 4.2 Consensus size: 134
13149 TCGGCACACG
* *
13159 CCACTATCGGCACACGCT-GGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCGGCACACGCTGG
1 CCACCATCGGCACACGCTGGGCCCTGGTGC-GGCGCTTGCCTCGAGCACCATCGGCACACGCTGG
* *
13223 GCCCTGGTGCGGTCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGCGGCAGGTTGC
65 GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGCAGGTTGC
13288 CTCGA
130 CTCGA
* *
13293 GCACCATCGGCACACGCTGGGCCCTGGTGCGGTCGGTTGCCTCGAGCACCATCGGCACACGCT-G
1 CCACCATCGGCACACGCTGGGCCCTGGTGCGG-CGCTTGCCTCGAGCACCATCGGCACACGCTGG
13357 GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGGC-GGTTG
65 GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGC-GGCAGGTTG
13421 CCTCGA
129 CCTCGA
13427 CCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGCTTGCCTCGAGCACCATCGGCACACGCTGG
1 CCACCATCGGCACACGCTGGGCCCTGGTGC-GGCGCTTGCCTCGAGCACCATCGGCACACGCTGG
13492 GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGGC-GGTTG
65 GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGC-GGCAGGTTG
13556 CCTCGA
129 CCTCGA
* *
13562 CCACCATCGGCACACGCTGGGCCCTGGTGCGCCAGGTTGCCTCGAGCACCATCGGCACACGCTGG
1 CCACCATCGGCACACGCTGGGCCCTGGTGCGGC-GCTTGCCTCGAGCACCATCGGCACACGCTGG
* *
13627 GCCCTGGTGCGGGCGCTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGCGGCAGGTTGC
65 GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGCAGGTTGC
13692 CTCGA
130 CTCGA
* *
13697 GCAACATCGGCACACGCTGGG
1 CCACCATCGGCACACGCTGGG
13718 TGTCATGAGC
Statistics
Matches: 404, Mismatches: 14, Indels: 13
0.94 0.03 0.03
Matches are distributed among these distances:
134 146 0.36
135 258 0.64
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (134 bp):
CCACCATCGGCACACGCTGGGCCCTGGTGCGGCGCTTGCCTCGAGCACCATCGGCACACGCTGGG
CCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGCAGGTTGCC
TCGA
Found at i:19478 original size:45 final size:45
Alignment explanation
Indices: 19404--19802 Score: 551
Period size: 45 Copynumber: 8.8 Consensus size: 45
19394 CGTGACACTC
*
19404 GGCCTTGGTGCGGGCGGCTTGCCTCGACCACCATCGGCACACGCTG
1 GGCCCTGGTGCGGGCGG-TTGCCTCGACCACCATCGGCACACGCTG
19450 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTG
19495 GGCCCTGGTGC-GGCGGTTGCCTCGACCACCATCGGCACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTG
19539 GG-CCTGGTGCGGGGCGGTTGCCTCGA-CA-CATCGGCACA-GCTG
1 GGCCCTGGTGC-GGGCGGTTGCCTCGACCACCATCGGCACACGCTG
* *
19581 GG-CCTTGTGCGGGCGGTTGCCTCGACCACCATCGCACACACGGCCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCG-GCACAC-G-CTG
* *
19628 TGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTG
19673 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGGCCTGGGGG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACAC-G-CT----G
* * *
19724 GGCCCTGGTGCGGACGGTTGCCTCGAGCACCATGGGCACACGCT-
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTG
**
19768 GGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATC
1 GGCCC-TGGTGCGGGCGGTTGCCTCGACCACCATC
19803 AGCAGAAGAT
Statistics
Matches: 320, Mismatches: 17, Indels: 33
0.86 0.05 0.09
Matches are distributed among these distances:
41 15 0.05
42 15 0.05
43 23 0.07
44 46 0.14
45 119 0.37
46 19 0.06
47 11 0.03
48 30 0.09
49 2 0.01
50 1 0.00
51 39 0.12
ACGTcount: A:0.11, C:0.36, G:0.36, T:0.17
Consensus pattern (45 bp):
GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTG
Found at i:19648 original size:134 final size:133
Alignment explanation
Indices: 19404--19802 Score: 547
Period size: 134 Copynumber: 2.9 Consensus size: 133
19394 CGTGACACTC
19404 GGCCTTGGTGCGGGCGGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTT
1 GGCC-TGGTGCGGGCGG-TTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTT
19469 GCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGC-GGCGGTTGCCTCGACCACCATCGGCAC
64 GCCTCGACCACCATCGGCACACGCT-GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCAC
19533 ACGCTG
128 ACGCTG
*
19539 GGCCTGGTGCGGGGCGGTTGCCTCGA-CA-CATCGGCACA-GCTGGG-CCTTGTGCGGGCGGTTG
1 GGCCTGGTGC-GGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
* *
19600 CCTCGACCACCATCGCACACACGGCCTGTGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGC
65 CCTCGACCACCATCG-GCACAC-G-CTG-GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGC
19665 ACACGCTG
126 ACACGCTG
*
19673 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGGCCTGGGGGGGCCCTGGTGCGGA
1 GG-CCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACAC-G-CT----GGGCCCTGGTGCGGG
* * **
19738 CGGTTGCCTCGAGCACCATGGGCACACGCTGGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATC
59 CGGTTGCCTCGACCACCATCGGCACACGCTGGCCC-TGGTGCGGGCGGTTGCCTCGACCACCATC
19803 AGCAGAAGAT
Statistics
Matches: 235, Mismatches: 11, Indels: 30
0.85 0.04 0.11
Matches are distributed among these distances:
130 31 0.13
131 11 0.05
132 12 0.05
133 14 0.06
134 64 0.27
135 20 0.09
136 10 0.04
138 1 0.00
139 2 0.01
140 4 0.02
141 29 0.12
142 1 0.00
143 8 0.03
144 28 0.12
ACGTcount: A:0.11, C:0.36, G:0.36, T:0.17
Consensus pattern (133 bp):
GGCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGC
CTCGACCACCATCGGCACACGCTGGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACG
CTG
Found at i:19753 original size:96 final size:90
Alignment explanation
Indices: 19404--19802 Score: 560
Period size: 96 Copynumber: 4.4 Consensus size: 90
19394 CGTGACACTC
*
19404 GGCCTTGGTGCGGGCGGCTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTT
1 GGCCCTGGTGCGGGCGG-TTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTT
*
19469 GCCTCGACCACCATCGGCACACGCTG
65 GCCTCGAGCACCATCGGCACACGCTG
19495 GGCCCTGGTGC-GGCGGTTGCCTCGACCACCATCGGCACACGCTGGG-CCTGGTGCGGGGCGGTT
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGC-GGGCGGTT
19558 GCCTCGA-CA-CATCGGCACA-GCTG
65 GCCTCGAGCACCATCGGCACACGCTG
* * *
19581 GG-CCTTGTGCGGGCGGTTGCCTCGACCACCATCGCACACACGGCCTGTGCCCTGGTGCGGGCGG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCG-GCACAC-G-CTGGGCCCTGGTGCGGGCGG
19645 TTGCCTCGAGCACCATCGGCACACGCTG
63 TTGCCTCGAGCACCATCGGCACACGCTG
*
19673 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGGCCTGGGGGGGCCCTGGTGCGGA
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACAC-G-CT----GGGCCCTGGTGCGGG
*
19738 CGGTTGCCTCGAGCACCATGGGCACACGCT-
60 CGGTTGCCTCGAGCACCATCGGCACACGCTG
**
19768 GGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATC
1 GGCCC-TGGTGCGGGCGGTTGCCTCGACCACCATC
19803 AGCAGAAGAT
Statistics
Matches: 282, Mismatches: 11, Indels: 25
0.89 0.03 0.08
Matches are distributed among these distances:
85 7 0.02
86 29 0.10
87 15 0.05
88 11 0.04
89 64 0.23
90 15 0.05
91 20 0.07
92 16 0.06
93 31 0.11
95 5 0.02
96 69 0.24
ACGTcount: A:0.11, C:0.36, G:0.36, T:0.17
Consensus pattern (90 bp):
GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTG
CCTCGAGCACCATCGGCACACGCTG
Done.