Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168267.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_497, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24922
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Found at i:2912 original size:26 final size:26
Alignment explanation
Indices: 2883--2935 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2873 CCAATCCGAT
2883 CTTACACT-GTGAATGAACTCCATATG
1 CTTACACTAG-GAATGAACTCCATATG
* *
2909 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
2935 C
1 C
2936 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:4674 original size:26 final size:26
Alignment explanation
Indices: 4636--4686 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4626 CTGATCTGAT
4636 CTTACACTAGGAATGAACTCCGTATA
1 CTTACACTAGGAATGAACTCCGTATA
* *
4662 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTAGGAATGAACTCCGTAT
4687 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATA
Found at i:5554 original size:26 final size:26
Alignment explanation
Indices: 5525--5577 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5515 CTGGTTCGAT
5525 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
5551 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
5577 C
1 C
5578 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:6444 original size:26 final size:26
Alignment explanation
Indices: 6415--6465 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
6405 CCGGTCCAAT
6415 CTTACACTGGGAATGAACTCCGTATA
1 CTTACACTGGGAATGAACTCCGTATA
* *
6441 CTTAGATTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
6466 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATA
Found at i:7729 original size:898 final size:895
Alignment explanation
Indices: 249--14486 Score: 16249
Period size: 889 Copynumber: 16.0 Consensus size: 895
239 CTCTGTATAC
* * * * *
249 TAGATTGGGAATGAACTCTGTAATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGCTCAGTC
1 TAGACTGGGAATGAACTCCGT-ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * ** * *
314 GGCCAGAGGGGTAGGATACGCAAGCCGGGGATCGACGGGGTCCCCCTTGCGTGCCACTGATCCTT
65 GGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGAC-GGGTCCCCCCTGCGTGCTGCCGATCCTG
* * * * * * * * *
379 TTGCCGCAACCCTCGGTTCAATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAGGCCAACT
129 CTGCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * ** * *
444 GATGAAACGTGCGAGCGGGCGGGCAGTACGCCGGCTAGAGAGACGGGATAAGAAAGTCGTGGATC
194 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
*
509 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGG
259 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
*
574 CTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
324 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
** * * *
639 TCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAAAAGGC
389 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
*
703 GTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
454 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
768 CTAAAAACGCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCATACACTT
519 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
833 CAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGAGGGTGTGAGTTCTAGAG
584 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
898 GTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
649 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
963 CACACCCCTCCGCCACCCCAATCGCCGAAACCCCAATGCCATCGGTCAGGTTCTCTGGTGATGCT
714 CACACCCCCCCGCC-CCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCT
* * * *
1028 CCGGCGATGGTGCCACGGGCGAAAAATAAATGCGGCACCAGCACACGCCCGAGCCCAACATGTGC
778 CCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
1093 ACCCGCAA-CC-C--T-TGGTCCGA---T-C-C--G-AT---C-T--TA--C-
843 ACCCGCAACCCTCAGTCTGGTCCGATCTTACACTAGAATGAACTTCGTATGCT
* ** * * *
1124 ---ATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAACATGCGGGCGCTCAGCTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
1186 GCCAGCGGGGTAGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCCTTGTGTGCTACCGATCCTG
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGA-CGGGTCCCCCC-TGCGTGCTGCCGATCCTG
* * * * * * *
1251 CTGCCACAACCCTCAAT-CTGATCCAATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCTAAC
129 CTGCCGCAACCCTCGATCCAG-TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * ** * *
1315 CAATGAAACAAGCGGGCAGGCAGGCACCACGCCTACCAGAGAGGCGGGATGCACAAGCTGTGGAT
193 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* *
1380 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTCTATG
258 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* * *
1445 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTTGTGGAGTTTCATGGCAAGACAACTCGTT
323 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * *
1510 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGG
388 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG
** * *
1575 AGTTTTGGTTCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCA
453 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *** * * *
1640 -ATAAAAAACTCTAAGTGGATC--GATAGGGAGACCATTTGAAAACAGTGTGCCCATTTCAGACA
518 GCT-AAAAACTCGAAGTGTA-CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
1702 CTTTAATTGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTT
581 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
1767 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGT
646 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
1832 GCACACACCCCCCCTCCCACCCCGCCAATCACCGGAACCCCAATACCGTCGGTTAGGTTCTCTGG
711 GCGCACA---CCCC-CCCGCCCC-CCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGG
* * * * * *
1897 CGATGCTCCGGCAATGGTGCCTCGAGTGAAAAAAAAGTGCAGCACCAGCACATGCCCGAGCCCAG
771 CGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* ** * *
1962 CATGTGCACTCGCAACCCTC-GATCCAGTCCGATCCTACACTAGGAATGAAC-TCTGTATTCT
836 CATGTGCACCCGCAACCCTCAG-TCTGGTCCGATCTTACACTA-GAATGAACTTC-GTATGCT
* * * * *
2023 TAGACTGGGAATGAACTCTGTATGCCTATGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * **
2088 GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCAGGTCCCCCCTACATGCTTTCGATCCTGC
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGA-CGGGTCCCCCCTGCGTGCTGCCGATCCTGC
* * * * * * *
2153 TACTGCAACCCTTGATCC-GGTCTGATCTTATACTAGGAATGAACTCCGTATGCCTAAGCAAACC
130 TGCCGCAACCCTCGATCCAGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** ** * *** * * *
2217 AACGAAACGATTGACCGAGCGGGCACTACGGTAGCTAGAAAGGCGGGATGCGCAAGCCGTGCATC
194 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
*
2282 GATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
259 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
* ** *
2347 CTTGTAAATTCATTCAATATTCCCTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACGACTCGTTT
324 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
2412 TCTATTTTTTCATGATTTTTGAAACTCTCTACGGTTCGAGATTTTTTTAAAATATTTTCAGAAGG
389 TCTA-TTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG
* * * * *
2477 ATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGCCATGCATAAAAACATTCA
453 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
2542 GCTAAAAAACTCAAACTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACAC
518 GCT-AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
2607 TTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCT-TTTCAAGGGGGTGTGAGTTCTC
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTC
*
2671 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
646 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *** **
2736 GCGCAAACCCCCCCTCCCTCCCAATTGTCAAAACCCCAATGCCGTCGGTCAGGTTCTC---CGA-
711 GCGCACACCCCCCCGCCC-CCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGAT
* * * * **
2797 -------CGATGGTGCCCCGGGTG-AAAATAAATGTGGCACTAGCACATGCCCGAGCCCAGTTTG
775 GCTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* *** * * *
2854 TGCACCCGTAACCCTCAGTCCAATCCGATCTTACACTGTGAATGAACTCCATATGCT
840 TGCACCCGCAACCCTCAGTCTGGTCCGATCTTACACT-AGAATGAACTTCGTATGCT
* * * **
2911 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGTGCTCAGCTT
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * * * *
2976 GCCAAAGGGGCAGGATGTGCAAGTCGGGGATCGGTCGGGTCCCCCCTGCATGCTGCCGATCCTAC
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATC-GACGGGTCCCCCCTGCGTGCTGCCGATCCTGC
* * * * *
3041 TACTGTAACCCTC-ACTTCAG-TCTGATCTT-GCACTGGGAATGAACTCCGTAAGCCTAAGCCAA
130 TGCCGCAACCCTCGA-TCCAGTTC-GATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
3103 CCGACGAAATGAGCGGACGGGCGAGCACTATGCCGACCAGAGAGACGGGACGCGTAAGTCGTGGA
192 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* *
3168 TCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
257 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* * * *
3233 GGCTTGTAAATTCAAACAATGGTCTCTTAAGCCTTCATGTGAAGTTTCATGGCACGACGACTCAT
322 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
** * * *
3298 TTTCTATTTTTCATGATTTTCCAAACTTTTTACGATTC-AGGATTTTTTAAAAATTTTTTCAAAA
387 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAA
* * * * * *
3362 GGATTTTTGACCCCAAGCTTGGTAGTCGTTATCCTTGTATTTTTGTTGGCATGCACAAAACAATT
451 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
3427 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAAACA
516 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
3492 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTC
581 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
3557 AAGGTTTGATGAAGGATA-GGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGG
646 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** * * ** * *
3621 GCGCACAACCCCCCGCCCCCCCATATCGTCGAAACCCTAATGCCACCGGTCAGGTTCTCCGACGA
711 GCGCACACCCCCCCG-CCCCCCA-ATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGA
* * * * *
3686 TGCCCCGGTGATGGTGCCTCGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGTCCAGCAT
774 TGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
3751 GTCCACCTGTAACCCTCAGTCT-G---G----T-C-C--------A------AT-CT
839 GTGCACCCGCAACCCTCAGTCTGGTCCGATCTTACACTAGAATGAACTTCGTATGCT
* * *
3783 TAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * ***** *
3848 ACCAGAGGGGTAGGACGCACAAGCTGGGGAT----GGGT-CGGGGGGCGTGCTGGCGATCCTGCT
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACGGGTCCCCCCTGCGTGCTGCCGATCCTGCT
* * * * * * * * * ** *
3908 GCCACCACCCTTGGTAC-GATCTGATCTTTGACTAGGAATGACCTCCGTATGCCTAAGGTAACTG
131 GCCGCAACCCTCGATCCAGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
3972 ACGAAACGGGCGGGTGGGTGGGCACTACGTCGGTCAGAGAGGCGGGATGCGCAAGTCGTGGATCG
195 ACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
* ** *
4037 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTTCATGCCAATGCCATTTTTGTGGC
260 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
*
4102 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTT
325 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
4167 CTATTTTTCATGATTTTTGAAACTTTTTATGATTCGAGATTTTTTTAAAATTTTTTCAGAAGGAG
390 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAG
* * *
4232 -TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTTAGC
455 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
4296 TAAAAACTAGAAGTGTACAGGACTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTT
520 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * * * *
4361 AATGGCTACTGACAGCAAACCGGTAAAATCTCAAATCCTATTTAAGGGGGTGTGTGTTCTTGAGG
585 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
4426 TTCGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGC
650 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
4491 ACA------C-CCCCCCAATCACAGGAACCCCAATGCC-ACTGGTCAGGTTCTCCGGCGATGCTC
715 ACACCCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGTC-GGTCAGGTTCTCTGGCGATGCTC
* * * * * *
4548 TGGTGATGGTGCCACGGGCG--AAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGTATGTGCA
779 CGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
* * * * * * *
4611 CCAGCAACCTTCGGTCTGATCTGATCTTACACTAGGAATGAACTCCGTATACT
844 CCCGCAACCCTCAGTCTGGTCCGATCTTACACTA-GAATGAACTTCGTATGCT
* * *
4664 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTGCGGGCGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
4729 GCCAGAGGGGTAGGATGCCCAAGCCAGGGATCGGTCGGGTCCCCCCCTGCGTGTTGTCGATCCAG
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATC-GACGGGT-CCCCCCTGCGTGCTGCCGATCCTG
* * * ** * * *
4794 CTGCCTCAACCCCTGGTTTGA-TCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAAC
129 CTGCCGCAA-CCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
4858 CGACGAAACAAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGAT
193 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* *
4923 CGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATG
258 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
4988 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG-T
323 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
*
5052 TTCTA-TTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAAATTTTTTCAAGAA
388 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTT-AAAATTTTTTC-AGAA
* *
5116 GGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
451 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * * *
5181 TAGCTAAAAACTAGAAGTGTACAGGACTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGATA
516 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
5246 CTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATCCTATTTAAGGGGGTGTGAGTTCTT
581 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
5311 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGGACCCATCACACATCATGT
646 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** *
5376 GCGCACA------C-CCCCCCAATCATAGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
711 GCGCACACCCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATG
* * * *
5434 CTCCGACGATGGTGCCACGGGCGAAAAAAATAT--GGCACCAGCACATGCCCAAGCCCAGCATGT
776 CTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* ** * * *
5497 GCACACGCAACCCTTGGTCTGGTTCGATCTTACACTGGGAATGAACTCCGTATGCT
841 GCACCCGCAACCCTCAGTCTGGTCCGATCTTACACT-AGAATGAACTTCGTATGCT
* * * *
5553 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGCACTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * ** * **
5618 GCCAAAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTTCCCCCCTGTGTGCTATCAATCCCA
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGA-CGGG-TCCCCCCTGCGTGCTGCCGATCCTG
* * * *
5683 CTGCCACAACCCTCGATCC-GATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAGC
129 CTGCCGCAACCCTCGATCCAGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
5747 CGACGAAACGAGCGGGCGAGCGGGCACTATGCCGGCCAGAGAGGCAGGATGCGTAAGTCGTGGAT
193 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * ** *
5812 CGATAGGGTGGCAGCTGGGTTTTCGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATG
258 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* * *
5877 GCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCATT
323 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
5942 TTCTATTTTTCATGATTTTGGAAACTTTTTACGGTTCGAGATTTTTGCTAAAATTTTTTCAGAAC
388 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTT-TTAAAATTTTTTCAGAAG
* * *
6007 GAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTCTTGTTGGCATGCACAAAAAAATTT
452 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
6072 AGCTAAAAACTAGAAGTGTACAGGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
517 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
6137 TTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATCCTATTTAAGGGGGTGTGAGTTCTTG
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
6202 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTG
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
6267 CGCACA-------GCCCCCTAATCACGGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGC
712 CGCACACCCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGC
** * *
6325 TCCGGCGATGGTGCCATGGGC--AAAAAAAATGTGGCACCAGCACTTGCCCGAGCCCAGCATGTG
777 TCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * *
6388 CACCCGCAACCTTCAGTCCGGTCCAATCTTACACTGGGAATGAACTCCGTATACT
842 CACCCGCAACCCTCAGTCTGGTCCGATCTTACACT-AGAATGAACTTCGTATGCT
* * *
6443 TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAACGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
** * * *
6508 GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTTGGGTCACCCTCTGTGTGCTGTCGAT-CTG
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATC-GACGGGTC-CCCCCTGCGTGCTGCCGATCCTG
* * ** * * * *
6572 ACTACCGTAACCCTCGATCTGGTCCAATCTTAGACTGGGAACGAACTCCGTATGCCTAAGCCCAC
129 -CTGCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * *
6637 CGACGAAACGAGCGGGCGGGTGGAAACTATGCCGGCTAGAGAGGCGAGATGCGCAAGCCGTGGAT
193 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * * * ** *
6702 CGATAGGGTGGTCGGTGGGTTGAGGCACATCTTCATTTTTTTGCTGTGACAATGCCATTTTTATG
258 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* *
6767 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCATGTGAAGTTTAATGGCAAGACGACTCGTT
323 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
*
6832 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG
388 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG
** * * * *
6897 AGTTTTGGCCGAAAACTTGGCAGACGTGTTCCTTGTATTTTTTTTGGCATGCACAAAAGAATTCA
453 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
6962 GCTAAAAACTCGAAGCGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
518 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
7027 TTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGTGGGTGTGAGTTCTCGA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
7092 GGTTTGAAGAGGGACA-GGGGCCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
648 GGTTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
7156 CCCACACCCACCCCGCCCCCCAATCACCGAAACCCCAATGCCGTCGGTTAGGTTCTTTGGCGATG
712 CGCACACCC-CCCCGCCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATG
* *
7221 CTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGT
776 CTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
7286 GCGCCCGTAACCCTAAGTCTGGTCCGATCTTACATTGAGAATGAACTTCGTATGCT
841 GCACCCGCAACCCTCAGTCTGGTCCGATCTTACACT-AGAATGAACTTCGTATGCT
* *
7342 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGCGCTTAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
** * * *
7407 GCC-CTGGGGCAGGATGCACAAGCCGGGGATCGACAGGGTATCACCCTGCGTGCTGCCGATCTTG
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGAC-GGGT-CCCCCCTGCGTGCTGCCGATCCTG
* * * * ** *
7471 CTACCGTAACCTTCAATTTAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
129 CTGCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * ** *
7536 GACGAAACGAGCGGACGGGCAGGCACTACGCCAGCCAGAGTGATGGGATGCGCAAGCTGTGGATC
194 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
*
7601 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCGAATGCCATTTTTATGG
259 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
*
7666 CTTGTAAATTCATACAATGGTCCCTTAAGACTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
324 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* * ** *
7731 TTTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGTGATTTTTTTTAAAATTTTTTCAGAAGG
389 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTTAAAATTTTTTCAGAAGG
* * * * *
7796 CGTTTTGGTCCCAATCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCA
453 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
7861 GCTAAAACCTCCAAGTGTACAGGATTTTGTGACCATTT-AAGAAAAATGTCCCCATTTCAGACAC
518 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAGACAC
*
7925 TTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
7990 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATTGCACATCATGTG
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *** *
8055 CGGAAAGCCCCCCCCGCCCCCCCAATTGTCGGAACCCCAATGCCGTCGGTAAGGTTCTC---CG-
712 CGCACA--CCCCCCCG-CCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGA
* * * *
8116 -G-T-----GATGGTG-CCCGGGC-CAAAAAAAATGTGGCACCAGCAAATGCCAGAGCCCAGCAT
774 TGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
** *** * *
8172 GTGCACCCATAACCCTCAGTCCAATCTGATCTTACACTGAGAATGAACTCCGTATGCT
839 GTGCACCCGCAACCCTCAGTCTGGTCCGATCTTACACT-AGAATGAACTTCGTATGCT
* * * *
8230 TAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** * * ** *
8295 ACCAAAAGGGCAGGATGTGCAAGTCGAGGATCGATCGGGTCCCCCCCTGCGTGCTGTTGATCCTA
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGA-CGGGT-CCCCCCTGCGTGCTGCCGATCCTG
* ** * *
8360 CT-CCTGCAACCCTCGGTCTTGTTCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
129 CTGCC-GCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * **
8424 TGACGAAACGAGCGGGGCGGGGCAGGCACTACGTCGGCCCAGAGAACGGCAAGATGGCGCAAGCC
193 CGACGAAACGAGC-GGGC-GGGCGGGCACTACGCCGG-CCAGAG-A-GGCGGGAT-GCGCAAGCC
* *
8489 GTGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTCCCATGCCAATGCCATT
252 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* * *
8554 TTTATGGCTTGTAAGTTCATACAATGGTCCCTTAGGCCTTCATGTGAAGTTTCATGGCAAGATGA
317 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
8619 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAAATTTTTT
382 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTT
* *** *
8683 CAGAAGGGGTTTTGGCAATAAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
446 CAGAAGGAGTTTTGGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
8748 AAAAGTT-AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
510 AAAA-TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
8812 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAATATCTCAAATGCTCTTTCAGAGGGTGTG
574 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
8877 AGTTTTCAAGGTTTAATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCGCAC
639 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** *
8942 ATCATGT--GCACACCCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGATCTC
704 ATCATGTGCGCACACCCCCCCG-CCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * ** * *
9005 CGACGATGCTATGGCAATGGTGCCCCGGGCG-AAAAAAAATACGGCACCAGCACATGCCCGAGCC
768 TGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
9069 CAGCATGTGCAACCGCAACCTTCGGTC-GGTCTGATCTTACACTGGGAATGAACATCGTATGCT
833 CAGCATGTGCACCCGCAACCCTCAGTCTGGTCCGATCTTACACT-AGAATGAACTTCGTATGCT
* ** * *
9132 T-GACTGGGAAGGAACTCTATATGCCTAAGTTAACCAACGAAACGAGCGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * ** * *
9196 GCCAGAGGGGCAGGACGCACAAGCTAGGGATCGGCCGGGTCCCCTCCTATGTGCTGTCGATCCTA
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATC-GACGGGTCCCC-CCTGCGTGCTGCCGATCCTG
* * * *
9261 CTGTCACAACCCTCGATCCAG-TCTGATCTTAGACTTGTAATGAACTCCGTATGCCTAAGCCAAC
129 CTGCCGCAACCCTCGATCCAGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
9325 CGACGAAACGAGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGGCGAGATGCACAAGCCGTGGAT
193 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
** * * *
9390 CGATAGGGTGGTCTGTGGGTTGAGGCACATCTTCATTTTTCTGCTATGACC-ATGCCATTTTTAT
258 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG-CCAATGCCATTTTTAT
9454 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
322 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * *
9519 TTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTCTTCAGAAG
387 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
* * * * *
9584 GAATTTTGGCCGCAAACTTAGTAGACGTGTTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTT
452 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
9649 AGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
517 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
** * *** * * * **
9714 TTTGAAAAAAATGTATAGTATTATG-TAACCATTTGAAAAAAGTTTCCCCATTTCAGACTCTTTA
582 TTT------AATGGCTACTGGCA-GCAAACC---TG-TAAAA---T-CTCAAAT--G-CTCTTTA
* ** * * * * * **
9778 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGGT-GTGAGTACTCAAG
629 A-GG-----GG--G------TGTGAGTTCTC-GA-GGT-TTGATGAGGGATAG-G-GGGC-CAA-
* * * * *
9841 GTTTGATGAGAGATAGGGGACCAATATAAGGGCCAAGTACCAGCA-CCCATCGCA-CATCATGTG
673 ---T-AT-----A-A-GGG-CCAA-GT-A---CC-AGCACC--CATCGCA---CATCAT-GTGCG
* * * * *
9904 CGCA--CACCAGCCCCGACC-CTC-CC--AATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTC
714 CACACCCCCCCGCCCC--CCAATCACCGGAA-C--C-----CC-AATGCCGTCGGTCAGGTTCTC
* * * * * * *
9963 TAGTGATGCTCCGGTGATGGTGCCTCGGGTG-AAAAAAAATGCGACACCAGCACATGCCCGAGCA
768 TGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
10027 CAGCATGTGCACCCACAACCCTCA-----GTCCG---GT-C-C---AAT---C-T-G-A--C-
833 CAGCATGTGCACCCGCAACCCTCAGTCTGGTCCGATCTTACACTAGAATGAACTTCGTATGCT
* * * *
10068 ---ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGGAACGAGCGTGCTGGCGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
*** * * **
10130 GCCAGAGGGGCAGGATGCACAAGTTAGGGATTGGTCGGGTCCCCCCCTGTATGCTGCCGATCCTG
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGA-TCGACGGGT-CCCCCCTGCGTGCTGCCGATCCTG
** * * * * *
10195 CTGCCATAACCCTCTATCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACC
129 CTGCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * * *
10260 GACGAAACGAGTGAACGGGTGGGCACTACGCTGGCCAGAGAGGCGGGATGCCCAAGCCGTGGATC
194 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
**
10325 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTATGG
259 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
* * *
10390 CTTGTAAATTCACACAATGGTCCTTTAAGCCTCCATGTGAAGTTTCATGGCAAGACGACTCGTTT
324 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
10455 TCTATTTTTCATGATTTTTGAAACTTTTCACGGTTCGGGATTTTTTTTAAATTTTTTCAGAAGGA
389 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
* * *
10520 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCGCAAAAAATTTCAG
454 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
10585 CTAAAAACTCAAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
519 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * *
10650 TAACGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTTTTGAG
584 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
10715 GTTTGATGAGGGATA-GGGACCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCG
649 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * ** * * * * * *
10779 CACAACCGCCCCGCCCCCCCAATCGCTAGAACCCCAATACCGCCGATCAGTTTCTCCGACGATGC
714 CAC-ACCCCCCCG-CCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGC
* * * *
10844 TCCAGCGATGGTGCCCCAGGC-AAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATATG
777 TCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
10908 CACCCGCAACCCTCAGTCTGGTCCGATCTTACACTAGGAATTAAC-TCTGTATGCT
842 CACCCGCAACCCTCAGTCTGGTCCGATCTTACACTA-GAATGAACTTC-GTATGCT
* * *
10963 GAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *** * *
11028 ACCAGAGGGGCAGGATGCACAAGCCGAGGATCGGCCGGGTCCCCCCAATGTGTTGCTGATCCTGC
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATC-GACGGGTCCCCCCTGCGTGCTGCCGATCCTGC
* * * * * *
11093 TGCCACAACCCTTGGTCCGGTTCGATCTTAGACTAGGG-ATGAACT-CATATG-CTAAGCCAATC
130 TGCCGCAACCCTCGATCCAGTTCGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
11155 GATGAAAGGTGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAACCGTGGATC
194 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* * * *
11220 AATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTTTTACGG
259 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
11285 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
324 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
** * *
11350 TCTATTTTTCATGATTTTCAAAACTTTTTTTC-GTTCGTGATTTTTTTTAAAATTTTTTCAGAAG
389 TCTATTTTTCATGATTTTTGAAAC-TTTTTACGGTTCGAGA-TTTTTTTAAAATTTTTTCAGAAG
* * *
11414 AAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTCGTTGGCATGCACAAAAAAATTC
452 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
11479 AGCTAAAAACTCCAAGTGTACAGGATTTTGTGACCATTTAAAAAAAATGTCCCCATTTCAGACAC
517 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
11544 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
11609 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTG
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * ** * * *
11674 CGCACATCCCCTCG-CCCCCAATCGTCGGAACCCCAATACTGTCGATCAGG---T-T--C--T-C
712 CGCACACCCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGC
* * * * * *
11729 T--GGCGATGGTGCCCCGGGTG-AAAAAAAATACGACACGAGCACATGCTCGAGCCAAGCATGTG
777 TCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
11791 CACCCGCAA-CC-C--T-T-G---G----T-C-C--G---G---TTCG-AT-CT
842 CACCCGCAACCCTCAGTCTGGTCCGATCTTACACTAGAATGAACTTCGTATGCT
** * * * * **
11820 TACCCTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAGTTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
11885 GCAAG-GGGGTAGGATGCACAAGCCGGGGATCGGCTGGGTCCCCCCTGCATGCTGCCAATCCTAC
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGAC-GGGTCCCCCCTGCGTGCTGCCGATCCTGC
* * * * ** * * * *
11949 TACTGCAACCCTTGGTCTGGTCCGATCTTAGACTGTGAATGAACTCTGTATACCTAAGCCAACCG
130 TGCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
** * * * * * * * *
12014 ATTAAAACAAGCAGGCGGGTGGGCACTATGCCGGCCAAAGAGGTGGGATGCGTAAGGC-TGGGAT
195 A-CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT-GGAT
* * * * * *
12078 CAATAGGGTGGTAGGTGGGTTTGGGCAAATCTTCATATTTCTGCCATGCCAATACCATTTTTCTA
258 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* * *
12143 CCGTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTT
323 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
*
12208 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAGTTTTTTCAGAAGG
388 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG
* * *
12273 AATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCA
453 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
12338 GCTAAAAACT-GAAAGTGTACAAGATTTTGTGACCATTTG-AAAAGGTGTCCCCATTTCAAACAC
518 GCTAAAAACTCG-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
12401 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
12466 AGGTTTGATGAGGGATAGCGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * * * *
12531 CGCACACCCCCCTCCCCCGCTCCCCCAATCGCTAGAACCCCAATGTCGTCGATCAGGTTCTCCGA
712 CGCACA----CC-CCCCCGC-CCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGG
* * * * * * *
12596 CGATGCTTCGGCGATGGTGCCTCAGACAAAAAAAAAATGCAGCACCAGCACATGCCTGAGCCCAG
771 CGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
12661 CATGTGCACTCGTAACCCTCA-----GTCC-A--GT-C-C--G-AT---C-T--TA--CT
836 CATGTGCACCCGCAACCCTCAGTCTGGTCCGATCTTACACTAGAATGAACTTCGTATGCT
* * * *
12700 T----TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCACTCAGCCT
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * *
12761 GCTAGAGGGCCAAGATGCGCAAGCTGGGGATCAGTCGGGTCCCCCCTACGTGCTGCCAATCCTGC
66 GCCAGAGGGGCAGGATGCACAAGCCGGGGATC-GACGGGTCCCCCCTGCGTGCTGCCGATCCTGC
* *
12826 TGCCGCAACCCTC-AGTCCAGTTCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACC
130 TGCCGCAACCCTCGA-TCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
12890 GACGAAACTAGTGGGCGAGCGGGCACTACGTCGGCTAGAGAGGCGGGATGCGCAAGCTGTGGATC
194 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* *
12955 GGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGG
259 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
* *
13020 CTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCATGTTAAGTTTCATGGCAAGACGACTCGTTT
324 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
** * * * * *
13085 TCTATTTTTCACAATTTTTGAAACTTTTTACGGGTCGGGAATTTTTTAAAATTCTTTCAGAAAGA
389 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
* *
13150 GTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAG
454 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
13215 CTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTTCAGACACT
519 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACT
* *
13279 TTAATGGCTACTGGCAGCAAACCTGTAAAACCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
13344 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCATGTGC
648 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
13409 GTACA-CCCCTCGCCCCTCCAATCATCGGAACCCCAATGCCGTCGCTTAGGTTCTCCT-GCGATG
713 GCACACCCCCCCGCCCC-CCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCT-CTGGCGATG
* * * ** *
13472 CTTCGGTGATGGTGCCCCGGGCAAAAAAAAAATGCGGCACCAGCACATGCTTGAGCCCAACATGT
776 CTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * *
13537 GCACCTGCAACCCTCGGTCCGGTCCGATCTTACACTAAGAATGAACTCCTTATGAT
841 GCACCCGCAACCCTCAGTCTGGTCCGATCTTACACT-AGAATGAACTTCGTATGCT
* * * *
13593 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
13658 GCCA-ATGGGACAGGATGCGCAAACCGGGGATCAACCGGGTCCCCCCTTACGTACTGTCGATCCT
66 GCCAGA-GGGGCAGGATGCACAAGCCGGGGATCGA-CGGGTCCCCCC-TGCGTGCTGCCGATCCT
** * * * *
13722 GCTATCGCAACCCTCGGTCTAGTAT-GATCTTAGACTGGGAATGAATTTCGTATGCCTAAGCCAA
128 GCTGCCGCAACCCTCGATCCAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
13786 CTGACGAAACGAGCGGGCGAGCGGGCACTACGCCGGCTAGAGAGGCAGGATACTCAAGCCGTGGA
192 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
*
13851 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCCATGCCAATGCCATTTTTAT
257 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* *
13916 GGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCAAGACGACTCGT
322 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
13981 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGGTCGGGATTTTTTTAAAATTCTTTCAGAAA
387 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
* * *
14046 GAGTTTTGGTCCCAAACTTGGTAGACTTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
452 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
14111 AGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
517 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
14176 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTTTTTAAGGGGGTGTGAGTTCTCG
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
14241 AGGTTTGATGAGGGCTAGGGGGCCAATATAAGGGCCTAGTTCCAGCACCCATCGCACATCATGTG
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
14306 CGTATA-GCCCCCG-CCCCAAATCACCGGAACCCCAATGCCGCCGGTCAGGTTC-CTCGACGATG
712 CGCACACCCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCT-GGCGATG
* * * * *
14368 CTTCAGCGATGGTGCCCCGGGC-AAAAAAAAATGTGGCACCAACACATGCCTGAGCCCAGCATGT
776 CTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
14432 GCACCCGCAACCCTCGGTCCGATCCGATCTTACACTGAGAGTGAACTTCGTATGC
841 GCACCCGCAACCCTCAGTCTGGTCCGATCTTACACT-AGAATGAACTTCGTATGC
14487 CTAAGTCAAC
Statistics
Matches: 11495, Mismatches: 1476, Indels: 764
0.84 0.11 0.06
Matches are distributed among these distances:
855 56 0.00
856 82 0.01
857 270 0.02
858 147 0.01
859 197 0.02
860 3 0.00
861 1 0.00
862 5 0.00
863 1 0.00
864 31 0.00
865 187 0.02
866 343 0.03
867 7 0.00
868 1 0.00
869 1 0.00
870 5 0.00
871 189 0.02
872 629 0.05
873 101 0.01
874 3 0.00
875 27 0.00
876 533 0.05
877 264 0.02
878 14 0.00
879 13 0.00
880 11 0.00
881 105 0.01
882 4 0.00
883 59 0.01
884 3 0.00
885 68 0.01
886 215 0.02
887 131 0.01
888 820 0.07
889 1133 0.10
890 797 0.07
891 127 0.01
892 8 0.00
893 11 0.00
894 183 0.02
895 891 0.08
896 306 0.03
897 283 0.02
898 1030 0.09
899 424 0.04
900 76 0.01
901 443 0.04
902 248 0.02
903 83 0.01
904 162 0.01
907 1 0.00
908 4 0.00
909 1 0.00
910 1 0.00
911 9 0.00
912 1 0.00
916 1 0.00
917 10 0.00
918 1 0.00
919 1 0.00
920 4 0.00
921 1 0.00
924 4 0.00
925 9 0.00
926 3 0.00
927 8 0.00
928 16 0.00
929 3 0.00
933 3 0.00
934 520 0.05
935 6 0.00
937 1 0.00
939 2 0.00
940 2 0.00
941 4 0.00
942 5 0.00
943 1 0.00
944 1 0.00
945 3 0.00
947 2 0.00
948 5 0.00
949 6 0.00
950 4 0.00
951 9 0.00
952 10 0.00
953 2 0.00
954 8 0.00
957 2 0.00
958 90 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACGGGTCCCCCCTGCGTGCTGCCGATCCTGCT
GCCGCAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCG
GCGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
CGCAACCCTCAGTCTGGTCCGATCTTACACTAGAATGAACTTCGTATGCT
Found at i:8241 original size:26 final size:26
Alignment explanation
Indices: 8202--8254 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
8192 CCAATCTGAT
8202 CTTACACTGAGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
* * *
8228 CTTAGACTGGGAATTAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
8254 C
1 C
8255 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCGTATG
Found at i:22522 original size:895 final size:892
Alignment explanation
Indices: 20460--24900 Score: 5463
Period size: 902 Copynumber: 5.0 Consensus size: 892
20450 GTGACACTTG
* * * * *
20460 CGTGCTATCGATCCTGCTATCGTAACCCTCAGT-TGGGTCTGATCTTATACTGGGAATCAACTCC
1 CGTGCTACCGATCCTGCTACCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCC
** * * * *
20524 GTACACCTAAGCCAACCGACAAAACGAGCGGGC-GAGCGAGCACTACGTCGGCCAGAGAGGCGGG
65 GTATGCCTAAGCCAACCAACGAAACGAGCGGGCAG-GCGGGCACTACGCCGGCCAGAGAGGCGGG
* * * * *
20588 ATGTGCAAGCCATGGATTGATACGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTTCTGCCGTG
129 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
*
20653 CCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
194 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * *
20718 TTGCAAGACGACTCATTTTCTATTTTTCATGGTTTTTGAAACTTTTTACGGTTC-AGGATTTTTT
259 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTT
* * *
20782 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA-GTGATCCTTGAATTTTTGTTGG
323 TAAAATTTTTTC-GAAAGATTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* ** * * * *
20846 CTTGCACAAAAAAATTTGGCTGAAAACTTGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGT
386 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
* *
20911 GTCCCCATTTCAGACCCTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAA
451 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
20976 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
516 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
21041 CCATCACACATCATGTGTGTACACCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCGTTGGCC
581 CCATCGCACATCATGTGTGCACACCGCCCG-CCCCCCAATCGCCGGAACCCCAATGCCGTCGGTC
* * *
21106 AGGTTCTCTGATGATGCTCCGACGATGGTGCCCTGGGCAAAAAAAAAATGTAGCACCAGCACCAG
645 AGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGGC-GAAAAAAAATGT-G-----GCACCAG
* * *
21171 CACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTTCGATCTTACACTAGGAATG
703 CACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTACA-TAGGAATG
* * * *
21236 AACTCCATATGATTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGC
767 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
* * ** * * *
21301 TGGCGCTCAGTCGGCCAGAGGGGCAGGATGCATAAGCCAGGGATCAACCGGGTCCCCCATA
832 AGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCCTA
* * * ** *
21362 CATGCTACCAATCCTGCTACCGCAACCCTTAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCA
1 CGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
** * * * * *
21427 TATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGCTACGTCGGCCAGAGAGGTGCGAT
66 TATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
* * *
21492 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTTCCATTCC
131 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
*
21557 AATGCCATTTTTATGGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* *
21622 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGGACCTTTTTACGGTTCGAGATTTTTTTAA
261 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
21687 AATTTTTTCGGAAAGATTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
326 AATTTTTTC-GAAAGATTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
21752 CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
390 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
21817 CCATTTC-GAACACTTTAATAGCTACTGACAGCAAACCTGTAAAATCCCAAATGCTCTTTAGGGG
455 CCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
21881 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGAACCAGTACCCA
519 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
21946 TCGCACATCATGTGTGCATATTCGCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGG
584 TCGCACATCATGTGTGCACA-CCGCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * * **
22011 TTCTCTGACGATGCTCCGATGAGGGTGCCCCGGGCGAGAAAAAATGTGGCACCAGCACATGCTTG
648 TTCTCTGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCG
* * * * * * * **
22076 AGCCCAGCTTTTACACCTACAACCCTTGGTCTGGCCCGATCTTGCATAGGGAATGAACTTTGTAT
713 AGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTACATA-GGAATGAACTCCGTAT
* * *
22141 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAACGTGCAGGCGCTCAG
777 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * **
22206 CCGGCCAGAGGGGTAGGGTGCGCAAATCGGGGATCGACCGGGTCCCCCCTA
842 CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCCTA
* ** * * * *
22257 TGTGCTACCGATCCTGCTATTGTAACCCTC-GATTTGATCTGATCTTAGACTGAGAATGAACTCC
1 CGTGCTACCGATCCTGCTACCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCC
* **
22321 GTATGCCTAAGCCAACCAACGAAACGAGCGGACAGGCGGGCACTACGGAGGCCAGAGAGGCGGGA
65 GTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGA
* *
22386 TGCGCAAGCCGTGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
130 TGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
* *
22451 CAGTGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
195 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
* *
22516 GGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
260 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTA
* * * * *
22581 AAATTTTTTCAAAAGGAGTTTTAT-CCCCAAACTT-TTAGATGTGATCCTTTTATTTTTGTTGGC
325 AAATTTTTTCGAAA-GA-TTTT-TGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
22644 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT-AAAAAAGTG
387 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
22708 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
452 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
22773 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
517 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* **
22838 CATCGCACATCATGTGCGCACACC-CCCTGCCCCACCCCCAATCGCTAGAACCCCAATGCCG-CT
582 CATCGCACATCATGTGTGCACACCGCCC-G---C-CCCCCAATCGCCGGAACCCCAATGCCGTC-
* * * *
22901 GGTCAAG---T-T--C-A----CCGGCGATGGTGCCCCGAGCGAAAAAAAATATGGCACCAGCAC
641 GGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCAC
* *
22955 ATGCCCGAGCCCAGCATGTGCACCCATAACCCTCGG--T--TCAG-TC---C-----AAT---CT
706 ATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTACATAGGAATGAACT
* * *
23004 ---TA--C----ACTGGGAATGAACTCCGTATGCCTAAGACAACCCATGAAATGAGCGTGCGGGC
771 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGC
* * * *
23060 GCTCAGCCGGCCTGAGGGGCAGGATGCGCAAGCCGGGGATTGACCGAGTCCCCCCTG
836 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCCTA
* * * ** * *
23117 CATGCTGCCAATCCTGCTACTACAACCCTAAGTCTGGTCTGATCTTAGACTGAGAATGAACTCCG
1 CGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * *
23182 TATACCTAAGCCAACTGAA-GAAACGAGCGGTGCGGGCAGGCACTATGCCGGCCAGAGAGGCGGG
66 TATGCCTAAGCCAAC-CAACGAAACGAGCGG-GCAGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* * *
23246 ATGCGCAAGCCGTGGCTCGATAGGGTGGTAGGTGGGGTTTAGG-ACATCTTCATA-TTCTGCCAC
129 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGT-GGGTTTAGGCACATCTTCATATTTCTGCCAT
* * * *
23309 GCCAATGCCATTTTTTATGGCATGTGAA-TCATATAATCGGTCCCGTAAGCCTTCATGTG-A--T
193 GCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAAT-GGTCCCTTAAGCCTTCATGTGAAGTT
* *
23370 TCATGGCAAGACAACCCGTTTTTCTATTCTTTTCA-GAATTTTTGAAACTTTTTA--GTTC-AGG
256 TCATGGCAAGACGACTCG-TTTTCTA-T-TTTTCATG-ATTTTTGAAACTTTTTACGGTTCGA-G
* **
23431 ATTTTTTTAAAAATTTTTTCAGAAGGATTTTTGGCCCTAAACTTGGTAGATATGATCCTTGTATT
316 ATTTTTTT-AAAATTTTTTC-GAAAGATTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATT
* * * *
23496 TTTGTTGGCATGCTCAAAAAAATTTAGCTGAAAACTCGAAGTGTACAGGATTTTGTGACCATATG
378 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
* *
23561 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATG
443 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
23626 CTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
508 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * ** *
23691 ACCAGCACCCATTGCACATCAT-T-TG-----CGCGCACCCCCCAATCGCCATAACCCCAATGCT
573 ACCAGCACCCATCGCACATCATGTGTGCACACCGCCCGCCCCCCAATCGCCGGAACCCCAATGCC
* * * * * * * *
23749 G-CCGTCAGGTTCTCTGGCAATGCTCTGACGATGGTGCCCCGGGTGAAAAAAGAATGCGACACAA
638 GTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAA-AATGTGGCACCA
* * * * * * * *
23813 GCACATGCCTGATCCCAGCATGTGCACCCGCAACCCTCAGTCCGATCCGATGTTACTCTAGGAAT
702 GCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTAC-ATAGGAAT
* * * * * *
23878 GAACTCCGTATGCTTAGACTAGGAATGAACTTCGTATGCGTAAGTCAACTCACAAAATGAGTGTG
766 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
* * * ** * * * ** *
23943 CGGGTGCCCAGATGGCCAGAGAGGCAGGATGTGCAAGTCGGGGATCGGTCGGGTCCCCTCCTG
831 CAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCC-CCTA
* * * **
24006 CGTACTACCGATCCTACTACCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCG
1 CGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * *
24071 TATGCCTAAGCCAACCAAAGAAACGAGCGGGCAGGCGGGCACTACACCGACCAGAGAGACGGGAT
66 TATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
* * * **
24136 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTTTTCTGTGCC
131 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
* * ** *
24201 AATGCCATTTTTATGGCCTGTAAATTTATACAATCATCCCTTAAGCCTTTAATGTGAAGTTTCAT
196 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TTCATGTGAAGTTTCAT
* ** * *
24266 GGCAAGAGGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTTA
260 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTA
* * * *
24331 AAATTTTTTCAAAAGGAGTTTTGGCACCAAAACTTGGTAGACATGATCCTTGTATTTTTTTTTGG
325 AAATTTTTTCGAAA-GATTTTTGGC-CC-AAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGG
24396 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
386 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
* * *
24461 GTCCCCATTTCAGACACTTTAATGGCTACGGGCAGCAAACTTGTAAAATCTCAAATGTTCTTTAA
451 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
24526 GGGGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGCACCAGCAC
516 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * ** * *
24591 CCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAA-CATCGGAACCCTAATGCCGTCAGT
581 CCATCGCACATCATGTGTGCACA-CCGCCCG-CCCCCCAATCGCCGGAACCCCAATGCCGTCGGT
* ** * * * * * * **
24655 CAGGTTCTCCGGTGAAGCTCCAACCATGGTGCCCCAGGCAAAAAAAAATATGGCACCAATACATG
644 CAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATG
* ** *
24720 CCCGAGCCCAGCATGTGCATCCGTAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCC
709 CCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTACA-TAGGAATGAACTCC
*
24785 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGAGCGTGCAGGCGC
773 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGC
* * * * **
24850 TCAGACGCCCTGAGGGGCAGGATGCACAAGCTC-GGGATCGGTCGGGTCCCC
838 TCAGCCGGCCAGAGGGGCAGGATGCGCAAGC-CGGGGATCGACCGGGTCCCC
24901 ACTTGCGTGC
Statistics
Matches: 3048, Mismatches: 389, Indels: 206
0.84 0.11 0.06
Matches are distributed among these distances:
850 5 0.00
851 25 0.01
852 1 0.00
853 1 0.00
854 1 0.00
855 1 0.00
856 3 0.00
857 1 0.00
858 19 0.01
859 25 0.01
860 222 0.07
861 232 0.08
862 200 0.07
864 1 0.00
866 5 0.00
867 1 0.00
869 2 0.00
870 1 0.00
872 3 0.00
876 3 0.00
878 1 0.00
879 2 0.00
881 2 0.00
882 4 0.00
884 2 0.00
886 65 0.02
887 8 0.00
888 182 0.06
889 135 0.04
890 24 0.01
891 46 0.02
892 223 0.07
893 4 0.00
894 158 0.05
895 544 0.18
896 15 0.00
897 31 0.01
900 181 0.06
901 74 0.02
902 587 0.19
903 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
CGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
AATTTTTTCGAAAGATTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGTGCACACCGCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
TCTGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGC
CCAGCATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTACATAGGAATGAACTCCGTATGCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGG
CCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCCTA
Found at i:24793 original size:26 final size:26
Alignment explanation
Indices: 24764--24816 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24754 CTGGTCCGAT
24764 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
24790 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
24816 C
1 C
24817 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Done.