genome.fa.s444.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168269.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_499, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24830

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378--449	30	2.4	30	81	11	76	48	0	1	50	1.09
431--464	13	2.5	14	80	9	52	41	2	0	55	1.15
585--646	15	4.2	15	75	19	58	51	1	0	46	1.10
782--815	13	2.5	13	90	4	50	50	0	2	47	1.16
1316--1350	14	2.4	15	85	4	54	45	0	2	51	1.16
1395--1433	12	3.2	12	88	3	51	48	2	0	48	1.15
2776--2809	14	2.5	14	95	4	61	55	0	0	44	0.99
2933--3012	29	2.8	28	78	17	85	45	1	0	53	1.08
2933--3012	25	3.0	26	80	12	74	45	1	0	53	1.08
2952--2981	15	1.9	16	93	6	53	50	0	0	50	1.00
3211--3252	21	2.0	21	81	9	50	38	0	0	61	0.96
3219--3272	18	3.1	18	84	7	58	38	1	0	59	1.08
3241--3273	17	1.9	17	93	0	57	42	3	0	54	1.15
3219--3272	27	2.0	28	85	3	74	38	1	0	59	1.08
3537--3624	16	5.3	17	70	20	53	42	3	1	53	1.25
3869--3910	21	1.9	23	85	9	61	40	0	4	54	1.21
4087--4131	19	2.4	19	85	10	58	42	2	0	55	1.12
4115--4166	23	2.3	23	83	3	70	55	1	0	42	1.10
4125--4165	11	3.6	12	83	9	59	63	0	0	36	0.95
4179--4217	20	2.0	20	84	0	51	46	0	2	51	1.14
4586--4631	17	2.6	19	80	16	62	56	2	0	41	1.11
4641--4707	26	2.6	25	83	9	73	49	0	1	49	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4793--4844	17	2.9	18	80	8	54	50	1	0	48	1.12
5086--5139	20	2.4	23	82	17	69	46	0	1	51	1.11
5981--6044	25	2.8	22	68	13	56	45	1	0	53	1.10
6236--6338	13	8.3	13	71	21	62	49	0	0	50	1.00
6226--6271	17	2.7	17	86	10	67	52	0	0	47	1.00
6261--6367	34	3.1	35	75	15	114	52	0	0	46	1.06
6243--6349	17	6.2	17	69	25	57	51	0	0	48	1.00
7335--7434	46	2.2	44	80	16	107	46	0	2	52	1.12
7315--7435	46	2.8	40	74	19	102	45	0	2	52	1.14
7317--7454	41	3.3	40	69	20	95	47	0	2	49	1.18
7590--7656	27	2.6	26	75	11	66	50	0	0	49	1.00
7803--7876	26	2.7	27	76	12	71	50	1	4	44	1.29
7818--7857	13	3.0	13	81	3	53	45	0	5	50	1.23
7953--8016	20	3.2	20	73	26	57	45	3	1	50	1.27
7976--8001	13	2.0	13	100	0	52	38	7	0	53	1.30
8051--8124	31	2.3	34	81	11	93	48	2	1	47	1.24
8079--8123	17	2.7	18	83	10	60	44	4	0	51	1.21
8198--8263	22	3.0	22	82	6	80	45	0	0	54	0.99
8300--8336	17	2.1	18	85	14	51	48	5	2	43	1.40
8316--8395	32	2.5	31	80	17	83	48	2	1	47	1.23
8320--8381	24	2.6	23	80	16	65	46	3	0	50	1.17
8481--8515	18	1.9	18	88	0	52	42	2	2	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8795--8838	19	2.2	20	88	11	65	59	2	2	36	1.23
9190--9706	180	2.9	176	76	7	495	39	10	9	41	1.71
9793--10132	182	1.9	182	81	4	418	41	11	8	38	1.72
10382--10712	181	1.8	181	81	3	407	40	6	11	41	1.67
12198--12236	19	2.0	20	85	14	55	25	0	5	69	1.09
12320--12370	27	2.0	25	88	7	75	45	1	1	50	1.24
12653--12706	19	2.7	19	77	13	56	46	1	1	50	1.23
13699--13736	20	1.9	20	94	0	67	47	7	0	44	1.32
13779--13864	10	7.5	12	68	24	53	48	1	1	48	1.16
13783--13876	36	2.7	35	75	15	95	47	2	1	48	1.20
13909--13951	15	2.9	15	80	16	54	55	0	0	44	0.99
14039--14077	19	2.1	18	90	4	60	53	5	5	35	1.45
14533--14575	15	2.9	16	83	10	56	48	0	4	46	1.22
15606--15739	46	3.0	47	83	5	170	41	11	13	33	1.81
15617--15746	22	5.9	22	79	7	129	39	11	14	34	1.82
16998--17035	7	5.6	7	82	17	53	26	0	0	73	0.83
16994--17042	15	3.5	15	78	16	50	24	2	0	73	0.94
18098--18170	20	3.5	20	73	21	69	50	0	1	47	1.09
18100--18183	22	3.8	22	72	19	68	51	0	1	47	1.08
18231--18297	36	1.9	34	82	11	82	47	1	4	46	1.31
18493--18534	15	2.9	14	77	22	50	52	0	2	45	1.13
18656--18720	33	2.0	33	84	6	87	40	9	0	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20467--20524	9	6.8	9	76	13	52	46	1	0	51	1.11
20473--20525	13	3.9	13	82	12	54	49	0	0	50	1.00
20779--20823	15	2.9	16	80	9	58	44	0	0	55	0.99
20907--20961	21	2.6	22	83	13	64	52	0	0	47	1.00
21769--21814	21	2.2	20	88	3	65	50	2	0	47	1.13
22708--23557	180	4.7	179	76	9	671	42	10	9	38	1.70
23624--24414	179	4.4	182	75	7	670	42	9	9	38	1.70
23764--24459	359	1.9	360	80	4	798	42	8	9	39	1.67
22720--24390	833	2.0	836	98	0	3213	42	9	9	38	1.69

Tables:   1

The End!