Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 102 of 147
Found at i:18691235 original size:62 final size:64
Alignment explanation
Indices: 18691135--18691283 Score: 162
Period size: 62 Copynumber: 2.4 Consensus size: 64
18691125 ATTGGGTGTT
* * *
18691135 AGATAATCTAGGCTTAAATTTTC-ATTAGTGCTAGATAATCTAGGCTTAAATTTT-ATCG-GGCC
1 AGATAATCTAGGCTTAAA-TTTCAATGAGTGCTAAATAATCTAAGCTTAAATTTTCATCGAGGCC
* * * * *
18691197 AGATAATCTAGGCTTAAATTTCAATGGGT-TTCAAATAATCTAAGCTTAAATTTTCATTGATGCT
1 AGATAATCTAGGCTTAAATTTCAATGAGTGCT-AAATAATCTAAGCTTAAATTTTCATCGAGGCC
* *
18691261 AGATAATTTGGGCTTAAATTTCA
1 AGATAATCTAGGCTTAAATTTCA
18691284 TTGGATGCCA
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
61 5 0.07
62 42 0.58
63 3 0.04
64 23 0.32
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (64 bp):
AGATAATCTAGGCTTAAATTTCAATGAGTGCTAAATAATCTAAGCTTAAATTTTCATCGAGGCC
Found at i:18691369 original size:33 final size:33
Alignment explanation
Indices: 18691324--18691407 Score: 116
Period size: 33 Copynumber: 2.5 Consensus size: 33
18691314 GGGTATTAGC
* *
18691324 TAAATTAGGCTTAAATTTTCATTACGTGCCAAA
1 TAAATGAGGCTTAAATTTTCATTACGTACCAAA
*
18691357 TAATATGA-GCTTAAATTTTCATTAGGTACCAAA
1 TAA-ATGAGGCTTAAATTTTCATTACGTACCAAA
*
18691390 TAAATTAGGCTTAAATTT
1 TAAATGAGGCTTAAATTT
18691408 AGGTACCAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
32 3 0.07
33 39 0.87
34 3 0.07
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (33 bp):
TAAATGAGGCTTAAATTTTCATTACGTACCAAA
Found at i:18691403 original size:94 final size:92
Alignment explanation
Indices: 18691240--18691433 Score: 221
Period size: 94 Copynumber: 2.1 Consensus size: 92
18691230 AATAATCTAA
* * * * * **
18691240 GCTTAAATTTTCATTGATGCTAGATAATTTGGGCTTAAATTTCATTGGATGCCAGCTAAATTAAG
1 GCTTAAATTTTCATTGATGCCAAATAATATGAGCTTAAATTTCATTGGATACCAAATAAATTAAG
* ** *
18691305 CTTAAATTTGGGTATTAGCTAAATTAG
66 CTTAAATTTAGGTACCAACTAAATTAG
18691332 GCTTAAATTTTCATT-ACGTGCCAAATAATATGAGCTTAAATTTTCATTAGG-TACCAAATAAAT
1 GCTTAAATTTTCATTGA--TGCCAAATAATATGAGCTTAAA-TTTCATT-GGATACCAAATAAAT
* *
18691395 TAGGCTTAAATTTAGGTACCAACTAAATTGG
62 TAAGCTTAAATTTAGGTACCAACTAAATTAG
18691426 GCTTAAAT
1 GCTTAAAT
18691434 ATTTTCATGA
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
91 1 0.01
92 15 0.18
93 18 0.21
94 49 0.58
95 2 0.02
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (92 bp):
GCTTAAATTTTCATTGATGCCAAATAATATGAGCTTAAATTTCATTGGATACCAAATAAATTAAG
CTTAAATTTAGGTACCAACTAAATTAG
Found at i:18691421 original size:28 final size:28
Alignment explanation
Indices: 18691378--18691433 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
18691368 TAAATTTTCA
18691378 TTAGGTACCAAATAAATTAGGCTTAAAT
1 TTAGGTACCAAATAAATTAGGCTTAAAT
* *
18691406 TTAGGTACCAACTAAATTGGGCTTAAAT
1 TTAGGTACCAAATAAATTAGGCTTAAAT
18691434 ATTTTCATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.32
Consensus pattern (28 bp):
TTAGGTACCAAATAAATTAGGCTTAAAT
Found at i:18696308 original size:17 final size:18
Alignment explanation
Indices: 18696268--18696308 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
18696258 GAATGAAAGG
18696268 CTGGAGATGTGGACTTCT
1 CTGGAGATGTGGACTTCT
18696286 CT-GAGAT-TGAGACTTCT
1 CTGGAGATGTG-GACTTCT
18696303 -TGGAGA
1 CTGGAGA
18696309 CTGCATGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 3 0.14
17 16 0.76
18 2 0.10
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.32
Consensus pattern (18 bp):
CTGGAGATGTGGACTTCT
Found at i:18698976 original size:18 final size:16
Alignment explanation
Indices: 18698939--18698982 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
18698929 TCATTAAAAA
18698939 TTTATTA-TTATTATT
1 TTTATTATTTATTATT
*
18698954 ATTATTATTTATTTATCT
1 TTTATTATTTA-TTAT-T
18698972 TTTATTATTTA
1 TTTATTATTTA
18698983 ATAGTTTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.25
16 3 0.12
17 4 0.17
18 11 0.46
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATTATTTATTATT
Found at i:18700505 original size:22 final size:21
Alignment explanation
Indices: 18700455--18700506 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
18700445 CTACTGCCCT
*
18700455 TTTTTTTTTTCACTTCTTCTA
1 TTTTTTTCTTCACTTCTTCTA
* *
18700476 TGTGTTTTCTTCACTTCTTCTGC
1 T-TTTTTTCTTCACTTCTTCT-A
18700499 TTTTTTTC
1 TTTTTTTC
18700507 AATTTTTTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.06, C:0.21, G:0.06, T:0.67
Consensus pattern (21 bp):
TTTTTTTCTTCACTTCTTCTA
Found at i:18701894 original size:24 final size:22
Alignment explanation
Indices: 18701866--18701924 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 22
18701856 CTTGGTCTGT
*
18701866 TTTTTTCTACTTATTTTTCTGCG
1 TTTTTTCTACTTATTTTCCTG-G
* *
18701889 TCTTTTTCTGCTTCTTTTCCTGG
1 T-TTTTTCTACTTATTTTCCTGG
18701912 TTTCTTTCTACTT
1 TTT-TTTCTACTT
18701925 CTTGCTTCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 2 0.07
23 11 0.37
24 17 0.57
ACGTcount: A:0.05, C:0.22, G:0.08, T:0.64
Consensus pattern (22 bp):
TTTTTTCTACTTATTTTCCTGG
Found at i:18702894 original size:25 final size:24
Alignment explanation
Indices: 18702848--18702894 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
18702838 TTGTTATTTG
18702848 ATTTTTTATTTATATATATTTAAA
1 ATTTTTTATTTATATATATTTAAA
* *
18702872 ATTTTATTATTTATTTATTTTTA
1 ATTTT-TTATTTATATATATTTA
18702895 TATTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (24 bp):
ATTTTTTATTTATATATATTTAAA
Found at i:18702926 original size:16 final size:17
Alignment explanation
Indices: 18702888--18702944 Score: 64
Period size: 16 Copynumber: 3.3 Consensus size: 17
18702878 TTATTTATTT
18702888 ATTTTTATATTATTTTTAC
1 ATTTTT-TA-TATTTTTAC
18702907 ATTTTTTAGT-TTTTTA-
1 ATTTTTTA-TATTTTTAC
*
18702923 ATTTTTTATATTTTTAT
1 ATTTTTTATATTTTTAC
18702940 ATTTT
1 ATTTT
18702945 GAAAATTTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
15 1 0.03
16 14 0.40
17 11 0.31
18 3 0.09
19 6 0.17
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.74
Consensus pattern (17 bp):
ATTTTTTATATTTTTAC
Found at i:18703390 original size:9 final size:8
Alignment explanation
Indices: 18703376--18703426 Score: 68
Period size: 8 Copynumber: 6.4 Consensus size: 8
18703366 TTTATGGTTC
18703376 TTTTTTTA
1 TTTTTTTA
18703384 TTTTTTTA
1 TTTTTTTA
*
18703392 TTTTTTGA
1 TTTTTTTA
*
18703400 TTTTTTTGG
1 TTTTTTT-A
18703409 TTTTTTTA
1 TTTTTTTA
18703417 -TTTTTTA
1 TTTTTTTA
18703424 TTT
1 TTT
18703427 ACTTACAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 7 0.19
8 23 0.62
9 7 0.19
ACGTcount: A:0.10, C:0.00, G:0.06, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:18703412 original size:25 final size:23
Alignment explanation
Indices: 18703376--18703426 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 23
18703366 TTTATGGTTC
*
18703376 TTTTTTTATTTTTTTATTTTTTGA
1 TTTTTTTAGTTTTTTATTTTTT-A
*
18703400 TTTTTTTGGTTTTTTTATTTTTTA
1 TTTTTTTAG-TTTTTTATTTTTTA
18703424 TTT
1 TTT
18703427 ACTTACAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.10, C:0.00, G:0.06, T:0.84
Consensus pattern (23 bp):
TTTTTTTAGTTTTTTATTTTTTA
Found at i:18703742 original size:33 final size:33
Alignment explanation
Indices: 18703697--18703912 Score: 157
Period size: 33 Copynumber: 6.8 Consensus size: 33
18703687 GTCAGTTAAA
*
18703697 TTAGGCTTAAATTTTCATTGGGTGCCATATAAT
1 TTAGGCTTAAATTTTCATTGGGTGCCAGATAAT
* * * *
18703730 TTGGGCTTAAA-TTTCATTAGGTGCTATATAAT
1 TTAGGCTTAAATTTTCATTGGGTGCCAGATAAT
* * * *
18703762 CTAGGC-TAAA-TTTCATTGAGTGCTAGCTAGA-
1 TTAGGCTTAAATTTTCATTGGGTGCCAGATA-AT
* *
18703793 TT-GGACTTAAATTTTCATTAGGTGCCAAATAAT
1 TTAGG-CTTAAATTTTCATTGGGTGCCAGATAAT
* * * *
18703826 TTAGGCTTAAATCTT-A--GGG-GCTA-ACAAA
1 TTAGGCTTAAATTTTCATTGGGTGCCAGATAAT
* * *
18703854 CTAGGCTTAAA-TTTCATTTGGTACCAGATAAT
1 TTAGGCTTAAATTTTCATTGGGTGCCAGATAAT
* *
18703886 TTGGGCTTAAATTTTCATTGAGTGCCA
1 TTAGGCTTAAATTTTCATTGGGTGCCA
18703913 ATTAGACTAG
Statistics
Matches: 139, Mismatches: 32, Indels: 24
0.71 0.16 0.12
Matches are distributed among these distances:
27 2 0.01
28 14 0.10
29 3 0.02
30 6 0.04
31 23 0.17
32 42 0.30
33 47 0.34
34 2 0.01
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (33 bp):
TTAGGCTTAAATTTTCATTGGGTGCCAGATAAT
Found at i:18703753 original size:32 final size:32
Alignment explanation
Indices: 18703697--18703977 Score: 163
Period size: 32 Copynumber: 8.8 Consensus size: 32
18703687 GTCAGTTAAA
* *
18703697 TTAGGCTTAAATTTTCATTGGGTGCCATATAAT
1 TTAGGCTTAAA-TTTCATTAGGTGCCAGATAAT
* * *
18703730 TTGGGCTTAAATTTCATTAGGTGCTATATAAT
1 TTAGGCTTAAATTTCATTAGGTGCCAGATAAT
* * *
18703762 CTAGGC-TAAATTTCATT-GAGTGCTAGCTAGA-
1 TTAGGCTTAAATTTCATTAG-GTGCCAGATA-AT
*
18703793 TT-GGACTTAAATTTTCATTAGGTGCCAAATAAT
1 TTAGG-CTTAAA-TTTCATTAGGTGCCAGATAAT
* * * *
18703826 TTAGGCTTAAA--TC-TTAGGGGCTA-ACAAA
1 TTAGGCTTAAATTTCATTAGGTGCCAGATAAT
* * *
18703854 CTAGGCTTAAATTTCATTTGGTACCAGATAAT
1 TTAGGCTTAAATTTCATTAGGTGCCAGATAAT
*
18703886 TTGGGCTTAAATTTTCATT-GAGTGCCA-ATTAGA-
1 TTAGGCTTAAA-TTTCATTAG-GTGCCAGA-TA-AT
* * *** * *
18703919 CTAGGTTTAAATTTCATTAGGTATAAGCTAAA
1 TTAGGCTTAAATTTCATTAGGTGCCAGATAAT
*
18703951 CTAGGCTTAAATTTCATT-GGTTGCCAG
1 TTAGGCTTAAATTTCATTAGG-TGCCAG
18703978 TTAAACTGGG
Statistics
Matches: 192, Mismatches: 36, Indels: 41
0.71 0.13 0.15
Matches are distributed among these distances:
28 13 0.07
29 8 0.04
30 7 0.04
31 30 0.16
32 75 0.39
33 55 0.29
34 4 0.02
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (32 bp):
TTAGGCTTAAATTTCATTAGGTGCCAGATAAT
Found at i:18703911 original size:93 final size:95
Alignment explanation
Indices: 18703700--18703969 Score: 254
Period size: 93 Copynumber: 2.8 Consensus size: 95
18703690 AGTTAAATTA
* * * * * *
18703700 GGCTTAAATTTTCATTGGGTGCCATATAATTTGGGCTTAAATTTCATTAGGTGCTATATAATCTA
1 GGCTTAAATTTTCATTGAGTGCCAAATAATTTAGGCTTAAA-TTCATTAGGGGCTATACAAACTA
* * *
18703765 GGCTAAATTTCATTGAGTGCTAGCTAGATTG
65 GGCTAAATTTCATTGAGTACCAGATAGATTG
*
18703796 GACTTAAATTTTCATT-AGGTGCCAAATAATTTAGGCTTAAA-TC-TTAGGGGCTA-ACAAACTA
1 GGCTTAAATTTTCATTGA-GTGCCAAATAATTTAGGCTTAAATTCATTAGGGGCTATACAAACTA
18703857 GGCTTAAATTTCATTTG-GTACCAGATA-ATTTG
65 GGC-TAAATTTCA-TTGAGTACCAGATAGA-TTG
* * *
18703889 GGCTTAAATTTTCATTGAGTGCCAATTAGA-CTAGGTTTAAATTTCATTA--GG-TATAAGCTAA
1 GGCTTAAATTTTCATTGAGTGCCAAATA-ATTTAGGCTTAAA-TTCATTAGGGGCTAT-A-C-AA
18703950 ACTAGGCTTAAATTTCATTG
61 ACTAGGC-TAAATTTCATTG
18703970 GTTGCCAGTT
Statistics
Matches: 147, Mismatches: 14, Indels: 26
0.79 0.07 0.14
Matches are distributed among these distances:
92 10 0.07
93 63 0.43
94 9 0.06
95 3 0.02
96 43 0.29
97 19 0.13
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.38
Consensus pattern (95 bp):
GGCTTAAATTTTCATTGAGTGCCAAATAATTTAGGCTTAAATTCATTAGGGGCTATACAAACTAG
GCTAAATTTCATTGAGTACCAGATAGATTG
Found at i:18703990 original size:157 final size:157
Alignment explanation
Indices: 18703698--18703994 Score: 333
Period size: 157 Copynumber: 1.9 Consensus size: 157
18703688 TCAGTTAAAT
* * *
18703698 TAGGCTTAAATTTTCATTGGGTGCCATATAATTTGGGCTTAAATTTCATTAGGTGCTATATAATC
1 TAGGCTTAAATTTTCATTGGGTACCAGATAATTTGGGCTTAAATTTCATTAGGTGCAATATAATC
* * * **
18703763 TAGGCTAAATTTCATTGAGTGCTAGCTAGATTGGACTTAAATTTTCATTAGGTGCCAAATAATTT
66 TAGGCTAAATTTCATTGAGTGATAGCTAAATAGGACTTAAATTTTCATTAGGTGCCAAATAAACT
18703828 AGGCTTAAATCTTAGGGGCTAACAAAC
131 AGGCTTAAATCTTAGGGGCTAACAAAC
*
18703855 TAGGCTTAAA-TTTCATTTGGTACCAGATAATTTGGGCTTAAATTTTCATT-GAGTGCCAAT-TA
1 TAGGCTTAAATTTTCATTGGGTACCAGATAATTTGGGCTTAAA-TTTCATTAG-GTG-CAATATA
*
18703917 GA-CTAGGTTTAAATTTCATT-AG-GTATAAGCTAAACTAGG-CTTAAA-TTTCATT-GGTTGCC
63 -ATCTAGG-CTAAATTTCATTGAGTG-AT-AGCTAAA-TAGGACTTAAATTTTCATTAGG-TGCC
** *
18703976 AGTTAAACTGGGCTTAAAT
122 AAATAAACTAGGCTTAAAT
18703995 GTTTCCATGA
Statistics
Matches: 118, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
156 33 0.28
157 55 0.47
158 27 0.23
159 3 0.03
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (157 bp):
TAGGCTTAAATTTTCATTGGGTACCAGATAATTTGGGCTTAAATTTCATTAGGTGCAATATAATC
TAGGCTAAATTTCATTGAGTGATAGCTAAATAGGACTTAAATTTTCATTAGGTGCCAAATAAACT
AGGCTTAAATCTTAGGGGCTAACAAAC
Found at i:18705023 original size:4 final size:4
Alignment explanation
Indices: 18705014--18705046 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
18705004 TTTCCTTTTC
18705014 CTTT CTTT CTTT CTTT CTTT -TCTT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CT-TT CTTT CTTT C
18705047 ACTTTTTCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 1 0.04
4 25 0.93
5 1 0.04
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
CTTT
Found at i:18705025 original size:20 final size:21
Alignment explanation
Indices: 18704990--18705066 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 21
18704980 ATTTATTTTA
18704990 TTTT-CTTTTTTAC-TTTTCC
1 TTTTCCTTTTTTACTTTTTCC
*
18705009 TTTTCCTTTCTTT-CTTTCTTTC
1 TTTTCCTTT-TTTACTTT-TTCC
18705031 TTTTCTTCTTTCTTTCACTTTTTCC
1 TTTTC--CTTT-TTT-ACTTTTTCC
*
18705056 TTTTTCTTTTT
1 TTTTCCTTTTT
18705067 GTCTTTACCT
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
19 4 0.09
20 5 0.11
21 5 0.11
22 10 0.21
23 4 0.09
24 8 0.17
25 7 0.15
26 4 0.09
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTCCTTTTTTACTTTTTCC
Found at i:18705071 original size:8 final size:7
Alignment explanation
Indices: 18704990--18705072 Score: 53
Period size: 8 Copynumber: 11.1 Consensus size: 7
18704980 ATTTATTTTA
18704990 TTTTCTT
1 TTTTCTT
18704997 TTTTAC--
1 TTTT-CTT
*
18705003 TTTTCCT
1 TTTTCTT
*
18705010 TTTCCTT
1 TTTTCTT
18705017 TCTTTCTT
1 T-TTTCTT
18705025 TCTTTCTT
1 T-TTTCTT
18705033 TTCTTCTT
1 TT-TTCTT
*
18705041 TCTTTCACT
1 T-TTTC-TT
*
18705050 TTTTCCT
1 TTTTCTT
18705057 TTTTCTT
1 TTTTCTT
18705064 TTTGTCTT
1 TTT-TCTT
18705072 T
1 T
18705073 ACCTTTTGTC
Statistics
Matches: 63, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
5 1 0.02
6 4 0.06
7 22 0.35
8 33 0.52
9 3 0.05
ACGTcount: A:0.02, C:0.23, G:0.01, T:0.73
Consensus pattern (7 bp):
TTTTCTT
Found at i:18707971 original size:17 final size:17
Alignment explanation
Indices: 18707945--18708005 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
18707935 ATTTTAAGTC
18707945 TTTAAATTTTCATGCAA
1 TTTAAATTTTCATGCAA
* * *
18707962 TTT-ATTTTTTATGCAC
1 TTTAAATTTTCATGCAA
*
18707978 TTTAAATTTTCATGTAA
1 TTTAAATTTTCATGCAA
18707995 TTTAATATTTT
1 TTTAA-ATTTT
18708006 AATATTATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
16 13 0.37
17 17 0.49
18 5 0.14
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.57
Consensus pattern (17 bp):
TTTAAATTTTCATGCAA
Found at i:18707975 original size:16 final size:16
Alignment explanation
Indices: 18707951--18707998 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
18707941 AGTCTTTAAA
18707951 TTTTCATGCAATTTAT
1 TTTTCATGCAATTTAT
* * *
18707967 TTTTTATGCACTTTAAA
1 TTTTCATGCAATTT-AT
*
18707984 TTTTCATGTAATTTA
1 TTTTCATGCAATTTA
18707999 ATATTTTAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 13 0.52
17 12 0.48
ACGTcount: A:0.27, C:0.10, G:0.06, T:0.56
Consensus pattern (16 bp):
TTTTCATGCAATTTAT
Found at i:18711005 original size:16 final size:16
Alignment explanation
Indices: 18710986--18711021 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
18710976 AATAAAGAAG
18710986 AAATAAAAA-TGTGCAA
1 AAATAAAAAGTGTG-AA
18711002 AAATAAAAAGTGTGAA
1 AAATAAAAAGTGTGAA
18711018 AAAT
1 AAAT
18711022 TTAAGTTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.64, C:0.03, G:0.14, T:0.19
Consensus pattern (16 bp):
AAATAAAAAGTGTGAA
Found at i:18712602 original size:18 final size:18
Alignment explanation
Indices: 18712549--18712602 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 18
18712539 AGCATTTTAA
18712549 TTTTCTATGTTATTTAAAT
1 TTTTC-ATGTTATTTAAAT
* * *
18712568 TTGT--TGTAATTTTAAT
1 TTTTCATGTTATTTAAAT
18712584 TTTTCATGTTATTTAAAT
1 TTTTCATGTTATTTAAAT
18712602 T
1 T
18712603 GATGCAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
16 13 0.48
18 11 0.41
19 3 0.11
ACGTcount: A:0.26, C:0.04, G:0.07, T:0.63
Consensus pattern (18 bp):
TTTTCATGTTATTTAAAT
Found at i:18712666 original size:17 final size:17
Alignment explanation
Indices: 18712640--18712700 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
18712630 ATTTTAAGTC
18712640 TTTAAATTTTCATGCAA
1 TTTAAATTTTCATGCAA
* * *
18712657 TTT-AGTTTTTATGCAC
1 TTTAAATTTTCATGCAA
*
18712673 TTTAAATTTTCATGTAA
1 TTTAAATTTTCATGCAA
18712690 TTTAATATTTT
1 TTTAA-ATTTT
18712701 AATGTACTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
16 13 0.37
17 17 0.49
18 5 0.14
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.56
Consensus pattern (17 bp):
TTTAAATTTTCATGCAA
Found at i:18712670 original size:16 final size:16
Alignment explanation
Indices: 18712646--18712693 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
18712636 AGTCTTTAAA
18712646 TTTTCATGCAATTTAG
1 TTTTCATGCAATTTAG
* * *
18712662 TTTTTATGCACTTTAAA
1 TTTTCATGCAATTT-AG
*
18712679 TTTTCATGTAATTTA
1 TTTTCATGCAATTTA
18712694 ATATTTTAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 13 0.52
17 12 0.48
ACGTcount: A:0.27, C:0.10, G:0.08, T:0.54
Consensus pattern (16 bp):
TTTTCATGCAATTTAG
Found at i:18712680 original size:33 final size:35
Alignment explanation
Indices: 18712639--18712712 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 35
18712629 AATTTTAAGT
*
18712639 CTTTAAATTTTCATGCAATTTAGT-TTTT-ATGCA
1 CTTTAAATTTTCATGCAATTTAATATTTTAATGCA
* *
18712672 CTTTAAATTTTCATGTAATTTAATATTTTAATGTA
1 CTTTAAATTTTCATGCAATTTAATATTTTAATGCA
18712707 CTTTAA
1 CTTTAA
18712713 TTATTTGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
33 22 0.61
34 4 0.11
35 10 0.28
ACGTcount: A:0.31, C:0.09, G:0.07, T:0.53
Consensus pattern (35 bp):
CTTTAAATTTTCATGCAATTTAATATTTTAATGCA
Found at i:18712705 original size:18 final size:18
Alignment explanation
Indices: 18712673--18712718 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
18712663 TTTTATGCAC
*
18712673 TTTAA-ATTTTCATGTAA
1 TTTAATATTTTAATGTAA
*
18712690 TTTAATATTTTAATGTAC
1 TTTAATATTTTAATGTAA
18712708 TTTAATTATTT
1 TTTAA-TATTT
18712719 GAAATTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 5 0.20
18 15 0.60
19 5 0.20
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (18 bp):
TTTAATATTTTAATGTAA
Found at i:18713089 original size:28 final size:28
Alignment explanation
Indices: 18713058--18713116 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
18713048 CATTATAAAC
18713058 TTTCAC-CTTTTCCATTTTTTCTTT-TTTT
1 TTTCACACTTTTCC--TTTTTCTTTCTTTT
*
18713086 TTTCACATTTTTCCTTTTTCTTTCTTTT
1 TTTCACACTTTTCCTTTTTCTTTCTTTT
18713114 TTT
1 TTT
18713117 TCTTTAAGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 9 0.32
28 13 0.46
29 6 0.21
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (28 bp):
TTTCACACTTTTCCTTTTTCTTTCTTTT
Found at i:18713094 original size:21 final size:20
Alignment explanation
Indices: 18713065--18713104 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
18713055 AACTTTCACC
*
18713065 TTTTCCATTTTTTCTTTTTT
1 TTTTCCATTTTTCCTTTTTT
18713085 TTTTCACATTTTTCCTTTTT
1 TTTTC-CATTTTTCCTTTTT
18713105 CTTTCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTCCATTTTTCCTTTTTT
Found at i:18716873 original size:15 final size:15
Alignment explanation
Indices: 18716853--18716884 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
18716843 AAAGTGTAGT
18716853 TACTTCACTTCCTCC
1 TACTTCACTTCCTCC
*
18716868 TACTTCACTTCTTCC
1 TACTTCACTTCCTCC
18716883 TA
1 TA
18716885 ATAAGATCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.41, G:0.00, T:0.44
Consensus pattern (15 bp):
TACTTCACTTCCTCC
Found at i:18718548 original size:203 final size:202
Alignment explanation
Indices: 18718134--18718686 Score: 576
Period size: 203 Copynumber: 2.7 Consensus size: 202
18718124 TAAATCTATT
* * * * * * *
18718134 GTGAAAATAAAATAAAACATCACCTTAT--TATTATTTTTTTATGACGCTAGTTTTCGTCAGCTA
1 GTGACAATAAAATCAAACATCACCTTATACT-TTA-ATTTTTGTGACGTTAGTTTTAGTTAGCTA
* * *
18718197 TTTATGAAAAAAAAAGTCATTGAAAGCTATAATCGTCACAAAAAAAATGAAAAAAAATCTAAAAT
64 TTTATGAAAAAAACA-TCATTGAAAGCTATAATCGTCACAAAATAAATG--ATAAAATCTAAAAT
* * * *
18718262 ATTAGTGATGAAAGGTAAATCATCACAGTATTAGTGACAGAATTATCATCACCAATAATTGTAAG
126 ATTAGTGATGAAAGGTAAATCATCACAATATTAGTGACACAATTATCATCACAAATAATTATAAG
* * **
18718327 ATAATGTCTACC
191 ATAATATCAAAA
** ** *
18718339 GTGACAATAAAATCAAATGTTGCCTTATGCTTTAATTTTTGTGACGTTAGTTTTAGTTAGCTATT
1 GTGACAATAAAATCAAACATCACCTTATACTTTAATTTTTGTGACGTTAGTTTTAGTTAGCTATT
* * *
18718404 TATGAACAAAAACATCATTAAAAGCTATAATCGTCACAAAATAAATGATAAAATCTGATATATTA
66 TATGAA-AAAAACATCATTGAAAGCTATAATCGTCACAAAATAAATGATAAAATCTAAAATATTA
* * ** * *
18718469 GTTATGAAAGGTAAATCATCACAATATT-GATGATACAATTATTGTCATAAATGATTATAAGATA
130 GTGATGAAAGGTAAATCATCACAATATTAG-TGACACAATTATCATCACAAATAATTATAAGATA
18718533 ATATCAAAA
194 ATATCAAAA
** ** *
18718542 GTGACAATAAAATCAAACATCATTTTATACTTTTTTTTTTGTGACGTTAGTTTTTGTTAGCTATT
1 GTGACAATAAAATCAAACATCACCTTATACTTTAATTTTTGTGACGTTAGTTTTAGTTAGCTATT
* * * * * *
18718607 TAT-AAATAAGAACGTCATTGAAGGTTATAATCATCACTAAATAAATGATAAAATC-ATAATATT
66 TATGAAA-AA-AACATCATTGAAAGCTATAATCGTCACAAAATAAATGATAAAATCTAAAATATT
* **
18718670 AATGACAAAAGGTAAAT
129 AGTGATGAAAGGTAAAT
18718687 TGTCACAGCA
Statistics
Matches: 288, Mismatches: 54, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
201 1 0.00
202 23 0.08
203 169 0.59
205 85 0.30
206 9 0.03
207 1 0.00
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (202 bp):
GTGACAATAAAATCAAACATCACCTTATACTTTAATTTTTGTGACGTTAGTTTTAGTTAGCTATT
TATGAAAAAAACATCATTGAAAGCTATAATCGTCACAAAATAAATGATAAAATCTAAAATATTAG
TGATGAAAGGTAAATCATCACAATATTAGTGACACAATTATCATCACAAATAATTATAAGATAAT
ATCAAAA
Found at i:18718830 original size:179 final size:181
Alignment explanation
Indices: 18718517--18718871 Score: 459
Period size: 179 Copynumber: 2.0 Consensus size: 181
18718507 TTATTGTCAT
* * *
18718517 AAATGATTATAAGATAATATCAAAAGTGACAATAAAATCAAACATCATTTTATACTTTTTTTTTT
1 AAATGATTACAAGATAACATCAAAAGTGACAATAAAATCAAACATCAATTTATAC-TTTTTTTTT
* * * * * *
18718582 GTGACGTTAGTTTTTGTTAGCTATTTATAAATAAGAACGTCATTGAAGGTTATAATCATCACTAA
65 GTGACATTAGTTTTTATTAGCTATTTATAAATAAAAACGTCATTAAAGGCTATAATCATCACAAA
*
18718647 ATAAATGATAAAATC--ATAATATTAATGACAAAAGGTAAATTGTCACAGCAC
130 ATAAATCATAAAATCTGAT-ATATTAATGACAAAAGGTAAATTGTCACAGCAC
* * ** *
18718698 AAATGATTGCAAGATAACATCAAACGTGACAATAAAATCAAATGTCACATTT-TGC-TTTTTTTT
1 AAATGATTACAAGATAACATCAAAAGTGACAATAAAATCAAACATCA-ATTTATACTTTTTTTTT
* *
18718761 GTGACATTAGTTTTTATTAGCTGTTTATGAAA-AAAAATGTCATTAAAGGCTATAATCATCACAA
65 GTGACATTAGTTTTTATTAGCTATTTAT-AAATAAAAACGTCATTAAAGGCTATAATCATCACAA
* * *
18718825 AATAAATCATTAAATCTGATATATTAGTGAGAAAAGGTAAATTGTCA
129 AATAAATCATAAAATCTGATATATTAATGACAAAAGGTAAATTGTCA
18718872 TAGTATTGGT
Statistics
Matches: 150, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
179 74 0.49
180 28 0.19
181 45 0.30
182 3 0.02
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (181 bp):
AAATGATTACAAGATAACATCAAAAGTGACAATAAAATCAAACATCAATTTATACTTTTTTTTTG
TGACATTAGTTTTTATTAGCTATTTATAAATAAAAACGTCATTAAAGGCTATAATCATCACAAAA
TAAATCATAAAATCTGATATATTAATGACAAAAGGTAAATTGTCACAGCAC
Found at i:18722024 original size:39 final size:39
Alignment explanation
Indices: 18721977--18722065 Score: 97
Period size: 39 Copynumber: 2.3 Consensus size: 39
18721967 TAGCTTCTTG
* * * * * *
18721977 TGGTGATTCCATTGACTCATGAGCTTATTGGACTTGTTC
1 TGGTGATTCCAGTGACTCATGAGCTGATCGAACTGGATC
* * *
18722016 TGGTGATTCTAGTGAGTCATTAGCTGATCGAACTGGATC
1 TGGTGATTCCAGTGACTCATGAGCTGATCGAACTGGATC
18722055 TGGTGATTCCA
1 TGGTGATTCCA
18722066 ATGAAGGACA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (39 bp):
TGGTGATTCCAGTGACTCATGAGCTGATCGAACTGGATC
Found at i:18724066 original size:235 final size:236
Alignment explanation
Indices: 18723477--18724247 Score: 984
Period size: 235 Copynumber: 3.3 Consensus size: 236
18723467 TATAGATTAG
* * **
18723477 CTAAAATAAAAAAAACATCACAAAAAAATTTCTCATCAAATAAATTT-GATAGTAAAAGTTTGTG
1 CTAAAAT--AAAAAACATCAC-AAAAAATTTTTCACCAAATAAATTTGGCGAGTAAAAGTTTGTG
*
18723541 ACATTTATGTTATTGTCATATAATACCATACATTGACATGACGAAATTGCAATGTCATTAATAAT
63 ACATTTATGTTATTGTCATATAATACCATACATTGACATAACGAAATTGCAATGTCATTAATAAT
* * *
18723606 TAACTAAAGTGTTCAATTTATGACAAAAATTAAGAACATCACCTAAAATTTA-TAAAAAAAATTT
128 TAACTAAAGTGTTCAATTTATGACAAAAATTAACAACATCACCTAAAATCTATTAGAAAAAATTT
* ** *
18723670 ATCACAATTAAAATTTTAAATTGGTGATGAAATTATAACATCAT
193 ATCACAAATAAAATTTTAAATTGGTGACAAAATTATAACATCAC
* * *
18723714 CTAAAATAAAAAACATCAGAAAAAATTTTTTACCAAATAAATTTGACG-GTAAAAGTTTGTGACA
1 CTAAAATAAAAAACATCACAAAAAATTTTTCACCAAATAAATTTGGCGAGTAAAAGTTTGTGACA
** * ** * * *
18723778 TTTATGTTATCATCATATAATACCATACATTAATGTAACGAATTTGTAATGTCATTAATAGTTAA
66 TTTATGTTATTGTCATATAATACCATACATTGACATAACGAAATTGCAATGTCATTAATAATTAA
** ** *
18723843 CTAAAGTGTTCAATTTACAACAAAAATTATTAACATCATCC-AAAATCTATTAGAAAAAATTTGT
131 CTAAAGTGTTCAATTTATGACAAAAATTAACAACATCA-CCTAAAATCTATTAGAAAAAATTTAT
18723907 CACAAATAAAATTTTAAATTGGTGACAAAATTATAACATCA-
195 CACAAATAAAATTTTAAATTGGTGACAAAATTATAACATCAC
* *
18723948 CTAAAAATAAAAAACATCACAAATAAATTTTTTACCTAATAAATTTGGCGA-TAAAAGTTTGTGA
1 CT-AAAATAAAAAACATCACAAA-AAATTTTTCACCAAATAAATTTGGCGAGTAAAAGTTTGTGA
* * * * *
18724012 CATTTATGTTATTGTTATATAA-ACTAT-CTATTGACCTAATGAAATTACAATGTCATTAATAAT
64 CATTTATGTTATTGTCATATAATACCATAC-ATTGACATAACGAAATTGCAATGTCATTAATAAT
* * * *
18724075 TAACTAAAGTGTTCATTTTGTGACAATAATTAACAACATCACCTAAAATCTATTAGAAAAAATTC
128 TAACTAAAGTGTTCAATTTATGACAAAAATTAACAACATCACCTAAAATCTATTAGAAAAAATTT
* * * **
18724140 ATTACAGATAAAATTTTAAGTTGGTGACAAAATTATAATGTCAC
193 ATCACAAATAAAATTTTAAATTGGTGACAAAATTATAACATCAC
** * *
18724184 CTAAAATAAAAAATTTCATAAAAAATTTTTCACCAAATAAATTTGGC-AGTAAAATTTTGTGACA
1 CTAAAATAAAAAACATCACAAAAAATTTTTCACCAAATAAATTTGGCGAGTAAAAGTTTGTGACA
18724248 AGATTTTGGT
Statistics
Matches: 463, Mismatches: 61, Indels: 23
0.85 0.11 0.04
Matches are distributed among these distances:
233 1 0.00
234 177 0.38
235 220 0.48
236 58 0.13
237 7 0.02
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.34
Consensus pattern (236 bp):
CTAAAATAAAAAACATCACAAAAAATTTTTCACCAAATAAATTTGGCGAGTAAAAGTTTGTGACA
TTTATGTTATTGTCATATAATACCATACATTGACATAACGAAATTGCAATGTCATTAATAATTAA
CTAAAGTGTTCAATTTATGACAAAAATTAACAACATCACCTAAAATCTATTAGAAAAAATTTATC
ACAAATAAAATTTTAAATTGGTGACAAAATTATAACATCAC
Found at i:18725177 original size:16 final size:16
Alignment explanation
Indices: 18725124--18725178 Score: 58
Period size: 16 Copynumber: 3.3 Consensus size: 16
18725114 TTTTATATTT
18725124 TTATTATTATCTACATTA
1 TTATTATTATC-ACA-TA
*
18725142 TTACTATTATCAC-TA
1 TTATTATTATCACATA
*
18725157 TTTATTATTATCCCATA
1 -TTATTATTATCACATA
18725174 TTATT
1 TTATT
18725179 CCATATATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
15 2 0.06
16 16 0.50
17 4 0.12
18 10 0.31
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATTATTATCACATA
Found at i:18732049 original size:21 final size:23
Alignment explanation
Indices: 18732024--18732076 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
18732014 GCCTTCATTT
18732024 TTTTGG-CTCTTT-AATTTT-TTG
1 TTTTGGACT-TTTAAATTTTATTG
18732045 TTTTGGGACTTTTAAATTTTATTG
1 TTTT-GGACTTTTAAATTTTATTG
18732069 TTTTGGAC
1 TTTTGGAC
18732077 AAGAATTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.14
22 5 0.18
23 12 0.43
24 7 0.25
ACGTcount: A:0.15, C:0.08, G:0.17, T:0.60
Consensus pattern (23 bp):
TTTTGGACTTTTAAATTTTATTG
Found at i:18732120 original size:19 final size:18
Alignment explanation
Indices: 18732093--18732170 Score: 63
Period size: 19 Copynumber: 4.3 Consensus size: 18
18732083 TTTGTTATTT
*
18732093 TTATATATTTAAAATTTTA
1 TTATTTATTT-AAATTTTA
*
18732112 TTATTTATTT-ATTTTTA
1 TTATTTATTTAAATTTTA
* *
18732129 -TATTATTTTTACAATTTTT
1 TTATT-TATTTA-AATTTTA
18732148 TTATATT-TTTAAATTTTA
1 TTAT-TTATTTAAATTTTA
18732166 TTATT
1 TTATT
18732171 GTTATTATTG
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
16 4 0.08
17 11 0.23
18 10 0.21
19 18 0.38
20 4 0.08
21 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTTATTTAAATTTTA
Found at i:18735646 original size:3 final size:3
Alignment explanation
Indices: 18735640--18735666 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
18735630 CTACTACTAC
18735640 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
18735667 AAAGATGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:18737393 original size:8 final size:7
Alignment explanation
Indices: 18737376--18737445 Score: 61
Period size: 7 Copynumber: 9.7 Consensus size: 7
18737366 TCTAAGGTAG
18737376 TTTTTGT
1 TTTTTGT
*
18737383 TTTTTGA
1 TTTTTGT
*
18737390 TTTTTGG
1 TTTTTGT
*
18737397 CTTTTGT
1 TTTTTGT
18737404 TTTTT-T
1 TTTTTGT
18737410 GTTTTTGT
1 -TTTTTGT
*
18737418 TTTTTTT
1 TTTTTGT
18737425 TTTTTGGT
1 TTTTT-GT
*
18737433 TGTTTGT
1 TTTTTGT
18737440 TGTTTT
1 T-TTTT
18737446 ATTAAAGAAC
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
6 1 0.02
7 40 0.80
8 9 0.18
ACGTcount: A:0.01, C:0.01, G:0.17, T:0.80
Consensus pattern (7 bp):
TTTTTGT
Found at i:18737608 original size:35 final size:35
Alignment explanation
Indices: 18737569--18738079 Score: 183
Period size: 35 Copynumber: 14.7 Consensus size: 35
18737559 TGATCAAGAT
* *
18737569 AACACCGCAAGTCAGAAATAAAAAATGACTGAGAC
1 AACACTGCAAGTCAGAAATAAAGAATGACTGAGAC
** * * * *
18737604 AACACTAAAAG--ACAAATAAA-AGACGATTGGGAC
1 AACACTGCAAGTCAGAAATAAAGA-ATGACTGAGAC
* * * * * *
18737637 AACA-TCGCAAGTAAAAAATAATG-ACGA-TCAGGAT
1 AACACT-GCAAGTCAGAAATAAAGAATGACTGA-GAC
* * *
18737671 AACACTGCAAGTCATAAATAAAGGATGACCG-GAAC
1 AACACTGCAAGTCAGAAATAAAGAATGACTGAG-AC
* *
18737706 AACATTGCAAGTC-GTAAATAAAGGATGACT-AGTAC
1 AACACTGCAAGTCAG-AAATAAAGAATGACTGAG-AC
* * * *
18737741 AACATTGCAAGTTA-ATAATAACGAATGACTGGGAC
1 AACACTGCAAGTCAGA-AATAAAGAATGACTGAGAC
* * * * * * *
18737776 AACATTGTAAGTCATATATAAAGAACGA-TCGGGAT
1 AACACTGCAAGTCAGAAATAAAGAATGACT-GAGAC
* ** * *
18737811 AATACCACAAGT-TGAAATAAA-AGACGACTG-GAAC
1 AACACTGCAAGTCAGAAATAAAGA-ATGACTGAG-AC
* * * * *
18737845 AACACTACAAGTTAGAAATAATGAATGAC-CATGAT
1 AACACTGCAAGTCAGAAATAAAGAATGACTGA-GAC
* * * * **
18737880 AACACCGTAAGTTAGAAATAAAAAATGACCAAGAC
1 AACACTGCAAGTCAGAAATAAAGAATGACTGAGAC
* * * *
18737915 AACACTGCAAGTCAAAAATAAAGGATGACTGGGAG
1 AACACTGCAAGTCAGAAATAAAGAATGACTGAGAC
** * * *
18737950 AACACTGCAAGTCATTAATAAAGGATGACTGGGAG
1 AACACTGCAAGTCAGAAATAAAGAATGACTGAGAC
* * * * *
18737985 AACACCGCAAGTCATAGATAACGAATGA-TCGAGAT
1 AACACTGCAAGTCAGAAATAAAGAATGACT-GAGAC
* * * *
18738020 AACACTACAAGTCAAATAACAAA-AGATGACTGAGAT
1 AACACTGCAAGTCAGA-AATAAAGA-ATGACTGAGAC
*
18738056 AACACTGCAAGTTAGAAAATAAAG
1 AACACTGCAAGTCAG-AAATAAAG
18738080 TAACTAGGGA
Statistics
Matches: 358, Mismatches: 87, Indels: 60
0.71 0.17 0.12
Matches are distributed among these distances:
32 2 0.01
33 26 0.07
34 50 0.14
35 244 0.68
36 34 0.09
37 2 0.01
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.18
Consensus pattern (35 bp):
AACACTGCAAGTCAGAAATAAAGAATGACTGAGAC
Found at i:18737970 original size:105 final size:105
Alignment explanation
Indices: 18737541--18738079 Score: 273
Period size: 105 Copynumber: 5.1 Consensus size: 105
18737531 ACCACATTGT
* * * * * **
18737541 AAGTCAAATAATAAACAATGATCAAGATAACACCGCAAGTCAGAAATAAAAAATGACTGAGACAA
1 AAGTCAGA-AATAAAGAATGACCAGGAGAACACCGCAAGTCAGAAATAAAAAATGACCAAGACAA
* * * *
18737606 CACTAAAAG--ACAAATAAAAGACGATTGGGACAACA-TCGC
65 CACTACAAGTCAAAAATAAAAGATGACTGGGACAACACT-GC
* * * * * * * * ** *
18737645 AAGTAAAAAATAATG-ACGATCAGGATAACACTGCAAGTCATAAATAAAGGATGACC-GGAACAA
1 AAGTCAGAAATAAAGAATGACCAGGAGAACACCGCAAGTCAGAAATAAAAAATGACCAAG-ACAA
* * ** * * * *
18737708 CATTGCAAGTCGTAAATAAAGGATGACTAGTACAACATTGC
65 CACTACAAGTCAAAAATAAAAGATGACTGGGACAACACTGC
* * ** * ** * * * * * * ** *
18737749 AAGTTA-ATAATAACGAATGACTGGGACAACATTGTAAGTCATATATAAAGAACGATCGGGATAA
1 AAGTCAGA-AATAAAGAATGACCAGGAGAACACCGCAAGTCAGAAATAAAAAATGACCAAGACAA
* * ** * * *
18737813 TACCACAAGT-TGAAATAAAAGACGACTGGAACAACACTAC
65 CACTACAAGTCAAAAATAAAAGATGACTGGGACAACACTGC
* * * * * *
18737853 AAGTTAGAAATAATGAATGACCATGATAACACCGTAAGTTAGAAATAAAAAATGACCAAGACAAC
1 AAGTCAGAAATAAAGAATGACCAGGAGAACACCGCAAGTCAGAAATAAAAAATGACCAAGACAAC
* * *
18737918 ACTGCAAGTCAAAAATAAAGGATGACTGGGAGAACACTGC
66 ACTACAAGTCAAAAATAAAAGATGACTGGGACAACACTGC
** * ** * * ** * * *
18737958 AAGTCATTAATAAAGGATGACTGGGAGAACACCGCAAGTCATAGATAACGAATGATCGAGATAAC
1 AAGTCAGAAATAAAGAATGACCAGGAGAACACCGCAAGTCAGAAATAAAAAATGACCAAGACAAC
* * *
18738023 ACTACAAGTCAAATAACAAAAGATGACTGAGATAACACTGC
66 ACTACAAGTCAAA-AATAAAAGATGACTGGGACAACACTGC
*
18738064 AAGTTAGAAAATAAAG
1 AAGTCAG-AAATAAAG
18738080 TAACTAGGGA
Statistics
Matches: 325, Mismatches: 99, Indels: 19
0.73 0.22 0.04
Matches are distributed among these distances:
101 1 0.00
102 44 0.14
103 6 0.02
104 114 0.35
105 123 0.38
106 30 0.09
107 7 0.02
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (105 bp):
AAGTCAGAAATAAAGAATGACCAGGAGAACACCGCAAGTCAGAAATAAAAAATGACCAAGACAAC
ACTACAAGTCAAAAATAAAAGATGACTGGGACAACACTGC
Found at i:18739040 original size:11 final size:10
Alignment explanation
Indices: 18739024--18739068 Score: 58
Period size: 9 Copynumber: 4.6 Consensus size: 10
18739014 ATTTTTTTGG
18739024 TTTTTATGCTT
1 TTTTTATG-TT
18739035 TTTTTATG-T
1 TTTTTATGTT
*
18739044 TTTATAT-TT
1 TTTTTATGTT
18739053 TTTTTATGTT
1 TTTTTATGTT
18739063 TTTTTA
1 TTTTTA
18739069 AGCAAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
9 14 0.47
10 8 0.27
11 8 0.27
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.78
Consensus pattern (10 bp):
TTTTTATGTT
Found at i:18739046 original size:9 final size:9
Alignment explanation
Indices: 18739015--18739066 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
18739005 TCGAATCTTA
18739015 TTTTTT-TG
1 TTTTTTATG
*
18739023 GTTTTTATG
1 TTTTTTATG
18739032 CTTTTTTTATG
1 --TTTTTTATG
* *
18739043 TTTTATATT
1 TTTTTTATG
18739052 TTTTTTATG
1 TTTTTTATG
18739061 TTTTTT
1 TTTTTT
18739067 TAAGCAAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
8 5 0.14
9 22 0.63
11 8 0.23
ACGTcount: A:0.10, C:0.02, G:0.10, T:0.79
Consensus pattern (9 bp):
TTTTTTATG
Found at i:18747745 original size:26 final size:27
Alignment explanation
Indices: 18747706--18747763 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
18747696 TATTTTTTTT
** *
18747706 AAATTAAAATAAAAGGAATTCAATTAA
1 AAATTAAAATAAAACCAATTAAATTAA
*
18747733 AAATT-AAATAAAACCAATTAAATTCA
1 AAATTAAAATAAAACCAATTAAATTAA
18747759 AAATT
1 AAATT
18747764 TTTAATAGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (27 bp):
AAATTAAAATAAAACCAATTAAATTAA
Found at i:18748904 original size:19 final size:19
Alignment explanation
Indices: 18748880--18748925 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
18748870 GGGTTTCGTT
*
18748880 TAGGGTTTAAGATTTTACC
1 TAGGGTTTAAGATTTCACC
* *
18748899 TAGGGTTTAGGGTTTCACC
1 TAGGGTTTAAGATTTCACC
18748918 TAGGGTTT
1 TAGGGTTT
18748926 CGTTTTAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.11, G:0.28, T:0.41
Consensus pattern (19 bp):
TAGGGTTTAAGATTTCACC
Found at i:18748983 original size:13 final size:13
Alignment explanation
Indices: 18748950--18748992 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
18748940 GATATTCTCC
*
18748950 TAAGGTTTCAATTT
1 TAAGGTTTC-AGTT
*
18748964 TAAGGTTTCGGTT
1 TAAGGTTTCAGTT
*
18748977 TAGGGTTTCAGTT
1 TAAGGTTTCAGTT
18748990 TAA
1 TAA
18748993 ATTTTAAGGC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
13 15 0.62
14 9 0.38
ACGTcount: A:0.23, C:0.07, G:0.23, T:0.47
Consensus pattern (13 bp):
TAAGGTTTCAGTT
Found at i:18749564 original size:5 final size:5
Alignment explanation
Indices: 18749524--18749576 Score: 52
Period size: 5 Copynumber: 10.2 Consensus size: 5
18749514 GATAAGATTT
* * * *
18749524 AAATA TAATA ATAATA ATAATA AGATG AAGTA AAATA AAATA AAATA AAATA
1 AAATA AAATA A-AATA A-AATA AAATA AAATA AAATA AAATA AAATA AAATA
18749576 A
1 A
18749577 GACAAGCAAC
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
5 28 0.72
6 11 0.28
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.25
Consensus pattern (5 bp):
AAATA
Found at i:18750738 original size:9 final size:9
Alignment explanation
Indices: 18750724--18750748 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
18750714 TTTATGTTAT
18750724 TTTGTTTTG
1 TTTGTTTTG
18750733 TTTGTTTTG
1 TTTGTTTTG
18750742 TTTGTTT
1 TTTGTTT
18750749 AATACTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (9 bp):
TTTGTTTTG
Found at i:18750791 original size:17 final size:17
Alignment explanation
Indices: 18750751--18750802 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
18750741 GTTTGTTTAA
*
18750751 TACTTTATACTATTTTT
1 TACTTTTTACTATTTTT
18750768 TACTTTTTACT-TTTTT
1 TACTTTTTACTATTTTT
* *
18750784 ATA-TTTTTATTATTATT
1 -TACTTTTTACTATTTTT
18750801 TA
1 TA
18750803 TAATTTATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 14 0.47
17 16 0.53
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (17 bp):
TACTTTTTACTATTTTT
Found at i:18759680 original size:16 final size:16
Alignment explanation
Indices: 18759655--18759694 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
18759645 CGATAAACGA
*
18759655 ATGATAATGATAATTT
1 ATGATGATGATAATTT
*
18759671 ATGATGATGATGATTT
1 ATGATGATGATAATTT
*
18759687 AAGATGAT
1 ATGATGAT
18759695 TTTTAATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (16 bp):
ATGATGATGATAATTT
Found at i:18760113 original size:17 final size:18
Alignment explanation
Indices: 18760073--18760113 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
18760063 TGAGATCTTA
18760073 TGAA-ATGGTTTTGTATT
1 TGAATATGGTTTTGTATT
**
18760090 TTTATATGG-TTTGTATT
1 TGAATATGGTTTTGTATT
18760107 TGAATAT
1 TGAATAT
18760114 ATAGATATGT
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (18 bp):
TGAATATGGTTTTGTATT
Found at i:18768644 original size:342 final size:342
Alignment explanation
Indices: 18768019--18768694 Score: 1309
Period size: 342 Copynumber: 2.0 Consensus size: 342
18768009 CATAGATTTA
18768019 GAACACTATCATTTGATGCACAATGAATCCTTTCAAGCAACAAACACTACCAACTGATGGTTTTC
1 GAACACTATCATTTGATGCACAATGAATCCTTTCAAGCAACAAACACTACCAACTGATGGTTTTC
18768084 ATGCAGAATGAATCCTTTCAAGCAATATTAAGTCATTTCATCAAACACCATAATCTAGAAAAACA
66 ATGCAGAATGAATCCTTTCAAGCAATATTAAGTCATTTCATCAAACACCATAATCTAGAAAAACA
18768149 AACAAAACAAATACCAAGATGAGATGAAAAAAAACATAATAGACTATTTCAGAACGATTTTCTAA
131 AACAAAACAAATACCAAGATGAGATGAAAAAAAACATAATAGACTATTTCAGAACGATTTTCTAA
18768214 GGATATCTTGAATGAAAGAACAAATTCATGTTAACAAGTAACAATTTTTTAGTAATTTCAAAAAT
196 GGATATCTTGAATGAAAGAACAAATTCATGTTAACAAGTAACAATTTTTTAGTAATTTCAAAAAT
*
18768279 ATTCTGTTAAAAAAAAACTAAACCTAAAATTGTATT-TGTGTTTGTAACTAAATATAACATTCAA
261 ATTCTGTTAAAAAAAAACTAAACCTAAAATTGCATTCT-TGTTTGTAACTAAATATAACATTCAA
18768343 TTTTAAGTTTCAAGCAAC
325 TTTTAAGTTTCAAGCAAC
*
18768361 GAACACTATCATTTGATGCACAATGAATCCTTTCAAGCAACGAACACTACCAACTGATGGTTTTC
1 GAACACTATCATTTGATGCACAATGAATCCTTTCAAGCAACAAACACTACCAACTGATGGTTTTC
*
18768426 ATGCAGAATGAATCCTTTCAAGCAATATTAAGTCGTTTCATCAAACACCATAATCTAGAAAAACA
66 ATGCAGAATGAATCCTTTCAAGCAATATTAAGTCATTTCATCAAACACCATAATCTAGAAAAACA
18768491 AACAAAACAAATACCAAGATGAGATGAAAAAAAACATAATAGACTATTTCAGAACGATTTTCTAA
131 AACAAAACAAATACCAAGATGAGATGAAAAAAAACATAATAGACTATTTCAGAACGATTTTCTAA
18768556 GGATATCTTGAATGAAAGAACAAATTCATGTTAACAAGTAACAATTTTTTAGTAATTTCAAAAAT
196 GGATATCTTGAATGAAAGAACAAATTCATGTTAACAAGTAACAATTTTTTAGTAATTTCAAAAAT
18768621 ATTCTGTTAAAAAAAAACTAAACCTAAAATTGCATTCTTGTTTGTAACTAAATATAACATTCAAT
261 ATTCTGTTAAAAAAAAACTAAACCTAAAATTGCATTCTTGTTTGTAACTAAATATAACATTCAAT
18768686 TTTAAGTTT
326 TTTAAGTTT
18768695 TTTAGAGAAA
Statistics
Matches: 330, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
342 329 1.00
343 1 0.00
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.30
Consensus pattern (342 bp):
GAACACTATCATTTGATGCACAATGAATCCTTTCAAGCAACAAACACTACCAACTGATGGTTTTC
ATGCAGAATGAATCCTTTCAAGCAATATTAAGTCATTTCATCAAACACCATAATCTAGAAAAACA
AACAAAACAAATACCAAGATGAGATGAAAAAAAACATAATAGACTATTTCAGAACGATTTTCTAA
GGATATCTTGAATGAAAGAACAAATTCATGTTAACAAGTAACAATTTTTTAGTAATTTCAAAAAT
ATTCTGTTAAAAAAAAACTAAACCTAAAATTGCATTCTTGTTTGTAACTAAATATAACATTCAAT
TTTAAGTTTCAAGCAAC
Found at i:18769293 original size:59 final size:62
Alignment explanation
Indices: 18769169--18769309 Score: 171
Period size: 59 Copynumber: 2.3 Consensus size: 62
18769159 TCCTTTCAAT
* ** * *
18769169 AAAAATGCCTTCAATAATCTCCTCCAAATCTTTTTTTTTATTATTCAAGGCATTTTTGG-CT
1 AAAAATGCCTTCAATAATCCCCTCCAAATCTTTTTTTGGATTATTCAAAGCATTTTTGGCCA
* **
18769230 AAAAATGCCTTCAATAATCCCCTTC-AAT-TTTTTTTGGATTATTCAAAGTGTTTTTGGCCA
1 AAAAATGCCTTCAATAATCCCCTCCAAATCTTTTTTTGGATTATTCAAAGCATTTTTGGCCA
* *
18769290 AAAAACGCCTTGAATAATCC
1 AAAAATGCCTTCAATAATCC
18769310 TTCATAAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
59 24 0.35
60 22 0.32
61 23 0.33
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (62 bp):
AAAAATGCCTTCAATAATCCCCTCCAAATCTTTTTTTGGATTATTCAAAGCATTTTTGGCCA
Found at i:18778609 original size:43 final size:43
Alignment explanation
Indices: 18778548--18778632 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
18778538 TATGTATTGA
* *
18778548 ACATAGCTACGAAACTATAGGCATGAGTACATAGAATGATTAT
1 ACATAGCTACGAAACTATAGGCATAAGTACACAGAATGATTAT
* *
18778591 ACATAGCTACGAAACTATAGGTATAAGTATACAGAATGATTA
1 ACATAGCTACGAAACTATAGGCATAAGTACACAGAATGATTA
18778633 GGACTAAGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.26
Consensus pattern (43 bp):
ACATAGCTACGAAACTATAGGCATAAGTACACAGAATGATTAT
Found at i:18785323 original size:23 final size:23
Alignment explanation
Indices: 18785293--18785338 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
18785283 GCTTTCCTCC
18785293 CCATACCCCATGAACAAACTTTG
1 CCATACCCCATGAACAAACTTTG
18785316 CCATACCCCATGAACAAACTTTG
1 CCATACCCCATGAACAAACTTTG
18785339 TGAATGAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.35, G:0.09, T:0.22
Consensus pattern (23 bp):
CCATACCCCATGAACAAACTTTG
Found at i:18786689 original size:147 final size:145
Alignment explanation
Indices: 18786488--18787036 Score: 535
Period size: 145 Copynumber: 3.8 Consensus size: 145
18786478 GGATTTTATA
* * *
18786488 ACAC-CAAAAATCATGAAATATTATAAATTTGAGATC-AAAAAGCTTTCATGAAAATTCAAGCTC
1 ACACACAAAAATCATGAAATATTATAAAATTAAGATCTAAAAAG-TTTCATGAAAATTCGAGCTC
* * * *
18786551 GAAAAGGTTAAATTACAAAAATACCTTTATAGGGGTATTTTGATAATTTCACACCTCCTAGGATA
65 GAAAAGGTCAAATTACGAAAATACCTTTATAGGGGTATTTTGGTAATTTCACACCTTCTAGGATA
18786616 CTACTATGATTTCAAAT
130 CTACT-TGATTTCAAAT
* * *
18786633 ACACAAAAAAATCATGAAAATATTATAAAATTAAGATTTAAAAAGTTTCAT-AAAAATCTGAGCT
1 ACACACAAAAATCATG-AAATATTATAAAATTAAGATCTAAAAAGTTTCATGAAAATTC-GAGCT
* * * * *
18786697 -TAGGAAGGTCAAATTATGAAAATACCTTTATAGGGATATTTTGGTAATTTCACA-CTTCTCGAG
64 CGA-AAAGGTCAAATTACGAAAATACCTTTATAGGGGTATTTTGGTAATTTCACACCTTCTAG-G
*
18786760 ATACT-GTTGTATTTTCAAAT
127 ATACTACTTG-A-TTTCAAAT
* **
18786780 ACA-ACAAAAATCATGAAATATTA-AGAAATTAAAATCTGGAAAGTTTCATGAAAATTCGAGCTA
1 ACACACAAAAATCATGAAATATTATA-AAATTAAGATCTAAAAAGTTTCATGAAAATTCGAGCT-
* * * ** * * *
18786843 GGAAAAGGT-AAATTACCAAAATACCCTTATAAAGGTATTTTGGTAATTTCAAACTTTTTAGGAT
64 CGAAAAGGTCAAATTACGAAAATACCTTTATAGGGGTATTTTGGTAATTTCACACCTTCTAGGAT
* *
18786907 ACATTCGTGATTTCAAAT
129 AC-TACTTGATTTCAAAT
* * * * * * *
18786925 GCAC-CAAAAGTTATGAAATATTATAAAATAAAGATCTAAAAATTTTTATCAAAATTCGAGC-CT
1 ACACACAAAAATCATGAAATATTATAAAATTAAGATCTAAAAAGTTTCATGAAAATTCGAGCTC-
** * * * *
18786988 GGGAAGGGCAAATTATGAAAATACCATTATAGGGGCATTTTGGTAATTT
65 GAAAAGGTCAAATTACGAAAATACCTTTATAGGGGTATTTTGGTAATTT
18787037 TGTACTTCTC
Statistics
Matches: 329, Mismatches: 56, Indels: 38
0.78 0.13 0.09
Matches are distributed among these distances:
144 6 0.02
145 171 0.52
146 53 0.16
147 93 0.28
148 6 0.02
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (145 bp):
ACACACAAAAATCATGAAATATTATAAAATTAAGATCTAAAAAGTTTCATGAAAATTCGAGCTCG
AAAAGGTCAAATTACGAAAATACCTTTATAGGGGTATTTTGGTAATTTCACACCTTCTAGGATAC
TACTTGATTTCAAAT
Found at i:18794663 original size:12 final size:12
Alignment explanation
Indices: 18794646--18794711 Score: 62
Period size: 12 Copynumber: 5.3 Consensus size: 12
18794636 AATTACACGT
18794646 TGAATGGTTTGC
1 TGAATGGTTTGC
*
18794658 TGAATGGTGTTTC
1 TGAATGGT-TTGC
* *
18794671 TAAATGGTTTAC
1 TGAATGGTTTGC
*
18794683 TGAATGGTGTTTC
1 TGAATGGT-TTGC
18794696 T-AAGTGGTTTGC
1 TGAA-TGGTTTGC
18794708 TGAA
1 TGAA
18794712 AGGTGTGTCT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
12 24 0.55
13 20 0.45
ACGTcount: A:0.21, C:0.08, G:0.29, T:0.42
Consensus pattern (12 bp):
TGAATGGTTTGC
Found at i:18794677 original size:25 final size:25
Alignment explanation
Indices: 18794648--18794717 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
18794638 TTACACGTTG
18794648 AATGGTTTGCTGAATGGTGTTTCTA
1 AATGGTTTGCTGAATGGTGTTTCTA
*
18794673 AATGGTTTACTGAATGGTGTTTCTA
1 AATGGTTTGCTGAATGGTGTTTCTA
* *
18794698 AGTGGTTTGCTGAAAGGTGT
1 AATGGTTTGCTGAATGGTGT
18794718 GTCTGAGCAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.21, C:0.07, G:0.30, T:0.41
Consensus pattern (25 bp):
AATGGTTTGCTGAATGGTGTTTCTA
Found at i:18794678 original size:13 final size:13
Alignment explanation
Indices: 18794660--18794703 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
18794650 TGGTTTGCTG
18794660 AATGGTGTTTCTA
1 AATGGTGTTTCTA
* *
18794673 AATGGT-TTACTG
1 AATGGTGTTTCTA
18794685 AATGGTGTTTCTA
1 AATGGTGTTTCTA
*
18794698 AGTGGT
1 AATGGT
18794704 TTGCTGAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.23, C:0.07, G:0.27, T:0.43
Consensus pattern (13 bp):
AATGGTGTTTCTA
Found at i:18801302 original size:16 final size:15
Alignment explanation
Indices: 18801281--18801311 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
18801271 GAGAGAGAGT
18801281 GAGAGATGAAAAAAAA
1 GAGAGA-GAAAAAAAA
18801297 GAGAGAGAAAAAAAA
1 GAGAGAGAAAAAAAA
18801312 ATTCTCAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (15 bp):
GAGAGAGAAAAAAAA
Found at i:18802461 original size:471 final size:470
Alignment explanation
Indices: 18801518--18802448 Score: 1435
Period size: 471 Copynumber: 2.0 Consensus size: 470
18801508 TTGTAATTAG
* *
18801518 TTTTTGAAATTTTTTTTAGATAAAATTTAATTAGAGGTATTGAGAATTTATAATTAAAAAAATAA
1 TTTTTGAAATTTTTTTTAGATAAAATCTAATTAGAGGGATTGAGAATTTATAATTAAAAAAATAA
18801583 AGGGATTAATAATTTAATATAATATATATAAAGATTTTAGATAAAAAATTTTGATAAATTTTTTT
66 AGGGATTAATAATTTAATATAATATATATAAAGATTTTAGATAAAAAATTTTGATAAATTTTTTT
18801648 GTATAAATTAGATGAAAAATAATTAAAATTAAATATTATATTTTAAGTTTGTTATATATTAATTT
131 GTATAAATTAGATGAAAAATAATTAAAATTAAATATTATATTTTAAGTTTGTTATATATTAATTT
* * * * *
18801713 ATGATTTTGTATTTGAAATTTAATAATTTTTTTGTTGTTTTGGTATTTATATTGTTGTCAATTTT
196 ATAATATTGTATCTAAAATTTAATAATTTTTTTGTTGTTTTGGTATTTATATTGTTGTCAATTCT
* *
18801778 TTTTATATTAGATTAATTCTTATTATTTTTATGTAATTATTGAAGATTCTATTTATTATATAATT
261 TTTGATATTAGATTAATTCTTATTATTTTTATGTAATTATTGAAGATTCTATTTATTATACAATT
* * *
18801843 ACTGAAAGTAATTTGTGATAAAAAAATTTATATCAATCAGTGTATCCAAAAGATTAAGTTATTTA
326 ACTGAAAGTAATTTGTGATAAAAAAAATTATATCAATCAGTGTATCAAAAAGATTAAGTTACTTA
* *
18801908 ATATATTTAGTATTTTATGATCTATTACTCTTATTAAGATTAAAAACTAAAAATTAAAAAATATA
391 ATAAATTTAGTATGTTATGATCTATTA--CTTATTAAGATTAAAAACTAAAAATTAAAAAATATA
** *
18801973 AGTTTGAAAATTTTTAA
454 AGCATAAAAATTTTTAA
18801990 TTTTTGAAA-TTTTTTTAGATAAAATCTAATTAGAGGGATT-A-AAGTTTTATAATTAAAAAAAT
1 TTTTTGAAATTTTTTTTAGATAAAATCTAATTAGAGGGATTGAGAA--TTTATAATTAAAAAAAT
* * * * *
18802052 TAAGGGATTAATAATTTAATATGATATATATAGAGATTTTAGATGAAAATTTTTGATAAATTTTT
64 AAAGGGATTAATAATTTAATATAATATATATAAAGATTTTAGATAAAAAATTTTGATAAATTTTT
* *
18802117 TTGTATAAGTTAGATGAAAAATAATTAAAATTAAATATTATATTTTGA-TTGTGTTATATATTAA
129 TTGTATAAATTAGATGAAAAATAATTAAAATTAAATATTATATTTTAAGTT-TGTTATATATTAA
18802181 TTTATAATATTGTATCTAAAATTTAATAATTTTTTTTGTTGTTTTGGTATTTATATTGTTGTCAA
193 TTTATAATATTGTATCTAAAATTTAATAA-TTTTTTTGTTGTTTTGGTATTTATATTGTTGTCAA
* * *
18802246 TTCTTTTGATATTAGATTAATTTTTATTATTTTTGTGTAATTATTGAAGATTGTATTTATTATAC
257 TTCTTTTGATATTAGATTAATTCTTATTATTTTTATGTAATTATTGAAGATTCTATTTATTATAC
* * * * *
18802311 AATTATTGAAAGTTATTTGTGATAAAAAAAATTATATTAATTAGTGTATCAAAAAGATTATGTTA
322 AATTACTGAAAGTAATTTGTGATAAAAAAAATTATATCAATCAGTGTATCAAAAAGATTAAGTTA
* *
18802376 CTTAATAAATTTA-TCGTGTTATGATCTATTA-TTCTTAAGATTAAAAACTAAAAATTAAAAAAT
387 CTTAATAAATTTAGT-ATGTTATGATCTATTACTTATTAAGATTAAAAACTAAAAATTAAAAAAT
*
18802439 -TTAGCATAAA
451 ATAAGCATAAA
18802449 TTCAATTTTT
Statistics
Matches: 419, Mismatches: 35, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
468 6 0.01
469 33 0.08
470 3 0.01
471 191 0.46
472 186 0.44
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (470 bp):
TTTTTGAAATTTTTTTTAGATAAAATCTAATTAGAGGGATTGAGAATTTATAATTAAAAAAATAA
AGGGATTAATAATTTAATATAATATATATAAAGATTTTAGATAAAAAATTTTGATAAATTTTTTT
GTATAAATTAGATGAAAAATAATTAAAATTAAATATTATATTTTAAGTTTGTTATATATTAATTT
ATAATATTGTATCTAAAATTTAATAATTTTTTTGTTGTTTTGGTATTTATATTGTTGTCAATTCT
TTTGATATTAGATTAATTCTTATTATTTTTATGTAATTATTGAAGATTCTATTTATTATACAATT
ACTGAAAGTAATTTGTGATAAAAAAAATTATATCAATCAGTGTATCAAAAAGATTAAGTTACTTA
ATAAATTTAGTATGTTATGATCTATTACTTATTAAGATTAAAAACTAAAAATTAAAAAATATAAG
CATAAAAATTTTTAA
Found at i:18805835 original size:18 final size:18
Alignment explanation
Indices: 18805809--18805843 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18805799 CCTCTACCTC
*
18805809 TACCCCAAATGTATCATT
1 TACCACAAATGTATCATT
18805827 TACCACAAATGTATCAT
1 TACCACAAATGTATCAT
18805844 CTTCAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (18 bp):
TACCACAAATGTATCATT
Found at i:18809054 original size:18 final size:17
Alignment explanation
Indices: 18809023--18809057 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
18809013 ATAAAAAAAC
18809023 TAAAAAAAAAAAGCAAA
1 TAAAAAAAAAAAGCAAA
*
18809040 TAAAAACAAATAAGCAAA
1 TAAAAA-AAAAAAGCAAA
18809058 AGTAAAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.77, C:0.09, G:0.06, T:0.09
Consensus pattern (17 bp):
TAAAAAAAAAAAGCAAA
Found at i:18812902 original size:59 final size:59
Alignment explanation
Indices: 18812831--18812954 Score: 178
Period size: 59 Copynumber: 2.1 Consensus size: 59
18812821 CAAACTTTTT
* * *
18812831 TATTTTTTGATAGATTTTATCCTACCAAATCTAGGGGAATATCTT-TAGAGTATCTTAGA
1 TATTTTTGGATAGATTTTATCCTACCAAATCTAAGAGAATATCTTAT-GAGTATCTTAGA
* * *
18812890 TATTTTTGGATAGCTTTTATCCTATCAAATCTAATAGAATATCTTATGAGTATCTTAGA
1 TATTTTTGGATAGATTTTATCCTACCAAATCTAAGAGAATATCTTATGAGTATCTTAGA
18812949 TATTTT
1 TATTTT
18812955 CTCTTTCTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
59 57 0.98
60 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.45
Consensus pattern (59 bp):
TATTTTTGGATAGATTTTATCCTACCAAATCTAAGAGAATATCTTATGAGTATCTTAGA
Found at i:18827999 original size:20 final size:20
Alignment explanation
Indices: 18827976--18828018 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
18827966 TTTAAAAACT
18827976 TATGCTTAAACATGATTTTG
1 TATGCTTAAACATGATTTTG
18827996 TATGCTTAAACATGATTTTG
1 TATGCTTAAACATGATTTTG
18828016 TAT
1 TAT
18828019 ATGAATGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.47
Consensus pattern (20 bp):
TATGCTTAAACATGATTTTG
Found at i:18833871 original size:24 final size:24
Alignment explanation
Indices: 18833844--18833921 Score: 79
Period size: 24 Copynumber: 3.3 Consensus size: 24
18833834 ATCAAATCAG
*
18833844 TTATTTAACATTTTCATTATATAT
1 TTATTTAACATTTTCATAATATAT
** **
18833868 TTA-TTAACACATAAATAACTA-AT
1 TTATTTAACATTTTCATAA-TATAT
*
18833891 TTATTTAACATTTTCATAACATAT
1 TTATTTAACATTTTCATAATATAT
18833915 TTATTTA
1 TTATTTA
18833922 TTTAACCTAC
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
23 16 0.39
24 25 0.61
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (24 bp):
TTATTTAACATTTTCATAATATAT
Found at i:18838364 original size:129 final size:130
Alignment explanation
Indices: 18838146--18838406 Score: 416
Period size: 129 Copynumber: 2.0 Consensus size: 130
18838136 AATTAATCTC
* * * *
18838146 TAGTCCTCTTATTGAATAACAATTGGACTCTATCGAAAATCCAAAACAATTGGATACTGTCATTA
1 TAGTCCTCTTATTGAACAACAATTGGACTCTATCGAAAATCCAAAACAACTAGATACTATCATTA
* * * *
18838211 AAAAATTCTCAAAATGCCAATAATATCAATTTTAAACAGGAATTACAATGATGCAGTATGCTAAA
66 AAAAATTCTCAAAATCCCAATAATATCAATTTTAAACAGAAATTACAATGATGCAATATGCCAAA
18838276 TAGTCCTCTTATTGAACAACAATTGGACTCTATCG-AAATCCAAAACAACTAGATACTATCATTA
1 TAGTCCTCTTATTGAACAACAATTGGACTCTATCGAAAATCCAAAACAACTAGATACTATCATTA
* * *
18838340 AAAAATTCTCAAAATCCCATTAATATTAATTTTAAGCAGAAATTACAATGATGCAATATGCCAAA
66 AAAAATTCTCAAAATCCCAATAATATCAATTTTAAACAGAAATTACAATGATGCAATATGCCAAA
18838405 TA
1 TA
18838407 CCTTGTGTAT
Statistics
Matches: 120, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
129 86 0.72
130 34 0.28
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (130 bp):
TAGTCCTCTTATTGAACAACAATTGGACTCTATCGAAAATCCAAAACAACTAGATACTATCATTA
AAAAATTCTCAAAATCCCAATAATATCAATTTTAAACAGAAATTACAATGATGCAATATGCCAAA
Found at i:18843810 original size:17 final size:17
Alignment explanation
Indices: 18843788--18843823 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
18843778 TTATTGATAT
18843788 AATATTAATCT-ATTATC
1 AATATTAAT-TAATTATC
18843805 AATATTAATTAATTATC
1 AATATTAATTAATTATC
18843822 AA
1 AA
18843824 ATTCAAACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.06
17 17 0.94
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.44
Consensus pattern (17 bp):
AATATTAATTAATTATC
Found at i:18844457 original size:60 final size:59
Alignment explanation
Indices: 18844322--18844435 Score: 165
Period size: 60 Copynumber: 1.9 Consensus size: 59
18844312 TAATTATAAG
* * *
18844322 GATATTTTCGTAATTATAATAAAGAATATTATAATTATTTTGATCAATTTGATGACAAA
1 GATATTTTCGTAATTATAATAAAAAATATTATAATAATTTTGATCAATATGATGACAAA
* *
18844381 GATATTTTTGTAATTATGATAAAAAAATATTATAATAATTTTGATCAATCATGAT
1 GATATTTTCGTAATTATAAT-AAAAAATATTATAATAATTTTGATCAAT-ATGAT
18844436 AGTAGGTAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
59 18 0.38
60 26 0.54
61 4 0.08
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (59 bp):
GATATTTTCGTAATTATAATAAAAAATATTATAATAATTTTGATCAATATGATGACAAA
Found at i:18844649 original size:56 final size:56
Alignment explanation
Indices: 18844533--18844678 Score: 154
Period size: 56 Copynumber: 2.6 Consensus size: 56
18844523 ATAATGATAT
* * * *
18844533 TATAGTAATTTTATATTTATAAGAGTGGTATTTTTATCATTTAAGAATAAAGACAT
1 TATAGTAATTTGATATTTATAAGAGAGATATTTTTATCATTTAAGAATAAAGACAA
* * *
18844589 TATAGTAATTTGATATTTATACGA-AGATATTTTTATCATTTAAGAAATGAGGA-AGA
1 TATAGTAATTTGATATTTATAAGAGAGATATTTTTATCATTTAAG-AATAAAGACA-A
* * * *
18844645 TATAGTAATTT-AAATTCAAAAGAAAGATATTTTT
1 TATAGTAATTTGATATTTATAAGAGAGATATTTTT
18844679 GTCAATTACA
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
55 27 0.36
56 49 0.64
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (56 bp):
TATAGTAATTTGATATTTATAAGAGAGATATTTTTATCATTTAAGAATAAAGACAA
Found at i:18845651 original size:129 final size:126
Alignment explanation
Indices: 18845381--18845764 Score: 412
Period size: 128 Copynumber: 3.0 Consensus size: 126
18845371 TATCCTTTTG
* *
18845381 ATTATTTTGTAAAAAATTAATATATGACATTTTATTTAAAAATTATTATAATACCCATATTAAAT
1 ATTACTTTGT-AAAAATTGATATATGACATTTTATTTAAAAATTATTATAATACCC-TATTAAAT
* * * * * **
18845446 TATATTTTAAA-TTTAACATAATATAAAATTAATTATATATTTAATTACTAAAATACCTTTGTC
64 TATATATTAAATTTTAACATAATATAAAAGTAA-TACATATTAAATTACTAAAATTCCTTTACC
** * **
18845509 ATTACTTAATAAAAATTTGACATATGACATTTTATTTAAAAATTACAATAATATCCCTATTAAAT
1 ATTACTTTGTAAAAA-TTGATATATGACATTTTATTTAAAAATTATTATAATA-CCCTATTAAAT
* * *
18845574 TACATATTAAATTTTAAAATGATATAAAAGTAACTACATATTAAATTACTAAAATTCCTTTACC
64 TATATATTAAATTTTAACATAATATAAAAGTAA-TACATATTAAATTACTAAAATTCCTTTACC
* ** * * *
18845638 ATTACTTTGTAAAAATTGATATGTGGGATTTTATTTGAAATTTATTATAATACCTTTATTAAATT
1 ATTACTTTGTAAAAATTGATATATGACATTTTATTTAAAAATTATTATAATACC-CTATTAAA-T
* * *
18845703 ATATATATTAAGTTTTAACATAAT-TTAAAGTTAATCACATATTAAATTACAAAAATATCCTT
64 -TATATATTAAATTTTAACATAATATAAAAG-TAAT-ACATATTAAATTACTAAAAT-TCCTT
18845765 ACTAGATGAA
Statistics
Matches: 212, Mismatches: 35, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
127 7 0.03
128 93 0.44
129 66 0.31
130 41 0.19
131 5 0.02
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (126 bp):
ATTACTTTGTAAAAATTGATATATGACATTTTATTTAAAAATTATTATAATACCCTATTAAATTA
TATATTAAATTTTAACATAATATAAAAGTAATACATATTAAATTACTAAAATTCCTTTACC
Found at i:18845843 original size:16 final size:16
Alignment explanation
Indices: 18845822--18845867 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
18845812 TCTGATATTA
18845822 AATTACATATTAAATG
1 AATTACATATTAAATG
*
18845838 AATTACATA--AAACTT
1 AATTACATATTAAA-TG
*
18845853 AGTTACATATTAAAT
1 AATTACATATTAAAT
18845868 TATCATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 3 0.12
15 9 0.36
16 10 0.40
17 3 0.12
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (16 bp):
AATTACATATTAAATG
Found at i:18846134 original size:9 final size:9
Alignment explanation
Indices: 18846098--18846153 Score: 62
Period size: 9 Copynumber: 6.3 Consensus size: 9
18846088 ATATTATATA
18846098 TATTAATTT
1 TATTAATTT
* *
18846107 TAATATTTT
1 TATTAATTT
*
18846116 TATGATATTT
1 TATTA-ATTT
18846126 TATTAATTT
1 TATTAATTT
18846135 TATTAA--T
1 TATTAATTT
18846142 TATTAATTT
1 TATTAATTT
18846151 TAT
1 TAT
18846154 ATTAAAATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
7 7 0.18
9 24 0.63
10 7 0.18
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (9 bp):
TATTAATTT
Found at i:18846362 original size:2 final size:2
Alignment explanation
Indices: 18846357--18846384 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
18846347 AAGAAGAAGA
18846357 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
18846385 GTAGAAACCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:18857988 original size:19 final size:20
Alignment explanation
Indices: 18857964--18858006 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
18857954 AAAATTTGGC
18857964 TTTTTTATTT-TATGAAAAT
1 TTTTTTATTTATATGAAAAT
*
18857983 TTTTTTATTTCATTTGAAAAT
1 TTTTTTATTT-ATATGAAAAT
18858004 TTT
1 TTT
18858007 CCTCAAATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.48
21 11 0.52
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (20 bp):
TTTTTTATTTATATGAAAAT
Found at i:18858460 original size:21 final size:20
Alignment explanation
Indices: 18858433--18858472 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
18858423 AAAGGTAATA
*
18858433 TTTTTTTATTAAATAAAAAACC
1 TTTTTTT-TCAAA-AAAAAACC
18858455 TTTTTTTTCAAAAAAAAA
1 TTTTTTTTCAAAAAAAAA
18858473 TTAGAGAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 4 0.24
22 7 0.41
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTTTTTTCAAAAAAAAACC
Found at i:18858544 original size:2 final size:2
Alignment explanation
Indices: 18858537--18858576 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
18858527 GAAAAACAAA
*
18858537 AG AG AG AG AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
18858577 TTTTCAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:18858816 original size:18 final size:18
Alignment explanation
Indices: 18858790--18858834 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
18858780 GAGATATTAA
*
18858790 TTGGGTTTAGAATTTTAG
1 TTGGTTTTAGAATTTTAG
18858808 TTGGTTTTAGAATTTTAG
1 TTGGTTTTAGAATTTTAG
18858826 TTGGTTTTA
1 TTGGTTTTA
18858835 ATTTGCTGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.20, C:0.00, G:0.24, T:0.56
Consensus pattern (18 bp):
TTGGTTTTAGAATTTTAG
Found at i:18866090 original size:2 final size:2
Alignment explanation
Indices: 18866083--18866109 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18866073 ACTATCAAAC
18866083 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
18866110 GTTTTTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18867686 original size:67 final size:67
Alignment explanation
Indices: 18867605--18867731 Score: 193
Period size: 67 Copynumber: 1.9 Consensus size: 67
18867595 TTTATCTCAT
* *
18867605 TAACAAAGTCAATATATATTAG-ATTATATTAATTAATACTAATTGATGAGTAATTGTTATGGTG
1 TAACAAAGTCAATATATA-CAGAATTATATTAATTAACACTAATTGATGAGTAATTGTTATGGTG
18867669 GAC
65 GAC
* * *
18867672 TAACAAAGTTAATATATACCGAATTATATTAATTAACATTAATTGATGAGTAATTGTTAT
1 TAACAAAGTCAATATATACAGAATTATATTAATTAACACTAATTGATGAGTAATTGTTAT
18867732 AATATCATTT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 1 0.02
67 53 0.98
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (67 bp):
TAACAAAGTCAATATATACAGAATTATATTAATTAACACTAATTGATGAGTAATTGTTATGGTGG
AC
Found at i:18873686 original size:113 final size:113
Alignment explanation
Indices: 18873486--18873711 Score: 344
Period size: 113 Copynumber: 2.0 Consensus size: 113
18873476 TAAATTTTCT
** ** * *
18873486 CTGGCTTATGGTTGGGGTGAATAGTTCAAAGATGTCCATACTTCATTGCATAAAAGGTCATGAGC
1 CTGGCTTATGGCCGGGGTGAATAGTTCAAAGACATCCATACCTCACTGCATAAAAGGTCATGAGC
*
18873551 TGATGATAAAGGTAAGCTTGATTGAAAGAAGATGTTGCACATAAGCAA
66 TGATGATAAAGGTAAGCATGATTGAAAGAAGATGTTGCACATAAGCAA
* * *
18873599 CTGGCTTATGGCCGGGGTGAATAGTTCAAGGACATCCATTCCTCACTGTATAAAAGGTCATGAGC
1 CTGGCTTATGGCCGGGGTGAATAGTTCAAAGACATCCATACCTCACTGCATAAAAGGTCATGAGC
* *
18873664 TGATGATAAAGGTGAGCATGATTGAAAGAAGATGTTGCACATGAGCAA
66 TGATGATAAAGGTAAGCATGATTGAAAGAAGATGTTGCACATAAGCAA
18873712 AACTTTGACA
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
113 101 1.00
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.27
Consensus pattern (113 bp):
CTGGCTTATGGCCGGGGTGAATAGTTCAAAGACATCCATACCTCACTGCATAAAAGGTCATGAGC
TGATGATAAAGGTAAGCATGATTGAAAGAAGATGTTGCACATAAGCAA
Found at i:18880084 original size:15 final size:16
Alignment explanation
Indices: 18880059--18880088 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
18880049 GTGGGCATTT
18880059 TTTTCCTTTTGGATTC
1 TTTTCCTTTTGGATTC
18880075 TTTT-CTTTTGGATT
1 TTTTCCTTTTGGATT
18880089 TTTGAAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.07, C:0.13, G:0.13, T:0.67
Consensus pattern (16 bp):
TTTTCCTTTTGGATTC
Found at i:18882166 original size:110 final size:110
Alignment explanation
Indices: 18882034--18882254 Score: 442
Period size: 110 Copynumber: 2.0 Consensus size: 110
18882024 GGGGCAACTT
18882034 AAGTTCTTTATATAAAGACAAGGGGTAAGTCAAAACCCTAAGGTATTAGGGTTTCTTAATGCTTA
1 AAGTTCTTTATATAAAGACAAGGGGTAAGTCAAAACCCTAAGGTATTAGGGTTTCTTAATGCTTA
18882099 ATTATATTCTTAATAGAATAACCCTTTTATCAAGTCCTATTCTTA
66 ATTATATTCTTAATAGAATAACCCTTTTATCAAGTCCTATTCTTA
18882144 AAGTTCTTTATATAAAGACAAGGGGTAAGTCAAAACCCTAAGGTATTAGGGTTTCTTAATGCTTA
1 AAGTTCTTTATATAAAGACAAGGGGTAAGTCAAAACCCTAAGGTATTAGGGTTTCTTAATGCTTA
18882209 ATTATATTCTTAATAGAATAACCCTTTTATCAAGTCCTATTCTTA
66 ATTATATTCTTAATAGAATAACCCTTTTATCAAGTCCTATTCTTA
18882254 A
1 A
18882255 TAGGATTACT
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 111 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (110 bp):
AAGTTCTTTATATAAAGACAAGGGGTAAGTCAAAACCCTAAGGTATTAGGGTTTCTTAATGCTTA
ATTATATTCTTAATAGAATAACCCTTTTATCAAGTCCTATTCTTA
Found at i:18885292 original size:23 final size:23
Alignment explanation
Indices: 18885265--18885310 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
18885255 TTTCCTTTCC
*
18885265 ATTAA-AATTTATTATTAGTATTT
1 ATTAATAATTTATTAATA-TATTT
*
18885288 ATTAATATTTTATTAATATATTT
1 ATTAATAATTTATTAATATATTT
18885311 GTATTATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
ATTAATAATTTATTAATATATTT
Found at i:18887113 original size:29 final size:29
Alignment explanation
Indices: 18887052--18887113 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
18887042 GGCTAAACTT
* *
18887052 TTTATTTTTTATTTCTTATACCTATTTTT
1 TTTATTTTTTATTTCTTATACCTATTATA
* *
18887081 TTTATTTTTTATTTTTTAATA-TTATTATA
1 TTTATTTTTTATTTCTT-ATACCTATTATA
18887110 TTTA
1 TTTA
18887114 CTATTATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 25 0.89
30 3 0.11
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (29 bp):
TTTATTTTTTATTTCTTATACCTATTATA
Found at i:18887129 original size:18 final size:17
Alignment explanation
Indices: 18887083--18887146 Score: 55
Period size: 18 Copynumber: 3.8 Consensus size: 17
18887073 CTATTTTTTT
18887083 TATT-TTTTATT-TTT-
1 TATTATTTTATTATTTA
*
18887097 TAATATTATTA-TATTTA
1 TATTATT-TTATTATTTA
18887114 CTATTATTTTATTATTATA
1 -TATTATTTTATTATT-TA
*
18887133 TTTTATTTTATTAT
1 TATTATTTTATTAT
18887147 ATTTGATTTG
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 3 0.08
15 3 0.08
16 6 0.15
17 3 0.08
18 23 0.57
19 2 0.05
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (17 bp):
TATTATTTTATTATTTA
Found at i:18887143 original size:23 final size:23
Alignment explanation
Indices: 18887082--18887149 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
18887072 CCTATTTTTT
*
18887082 TTATTTTTTATTTT-TTAATATTA
1 TTATATTTTATTTTATT-ATATTA
* *
18887105 TTATA-TTTACTATTATTTTATTA
1 TTATATTTTA-TTTTATTATATTA
18887128 TTATATTTTATTTTATTATATT
1 TTATATTTTATTTTATTATATT
18887150 TGATTTGATT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
22 4 0.11
23 27 0.73
24 6 0.16
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (23 bp):
TTATATTTTATTTTATTATATTA
Found at i:18892221 original size:2 final size:2
Alignment explanation
Indices: 18892214--18892244 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
18892204 TATTCAAAGA
18892214 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
18892245 CAAGAAGGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18893931 original size:24 final size:24
Alignment explanation
Indices: 18893872--18893931 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 24
18893862 AACATAATAC
* *
18893872 ATATATTTAATTTATACTAGTTTA
1 ATATTTTTAATATATACTAGTTTA
*** * *
18893896 ATATTAAAAATATATATTAGTTTG
1 ATATTTTTAATATATACTAGTTTA
18893920 ATATTTTTAATA
1 ATATTTTTAATA
18893932 ATTTTAATAA
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (24 bp):
ATATTTTTAATATATACTAGTTTA
Found at i:18894126 original size:31 final size:32
Alignment explanation
Indices: 18894091--18894164 Score: 91
Period size: 31 Copynumber: 2.3 Consensus size: 32
18894081 AGTTCGGATA
18894091 ATTTTAATTTTAAATT-ATTTTGAATTCAAA-T
1 ATTTTAATTTTAAATTGA-TTTGAATTCAAATT
*
18894122 ATTTT-ATGTTTGAATTGATTTGAATTCAAATT
1 ATTTTAAT-TTTAAATTGATTTGAATTCAAATT
18894154 ATTTTTAATTT
1 A-TTTTAATTT
18894165 GTGTTGTTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
30 2 0.05
31 24 0.65
32 3 0.08
33 6 0.16
34 2 0.05
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.57
Consensus pattern (32 bp):
ATTTTAATTTTAAATTGATTTGAATTCAAATT
Found at i:18894483 original size:16 final size:15
Alignment explanation
Indices: 18894458--18894491 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
18894448 ACTCGGCATT
18894458 ATTTCACAACAAAAA
1 ATTTCACAACAAAAA
*
18894473 ATTTACACAACGAAAA
1 ATTT-CACAACAAAAA
18894489 ATT
1 ATT
18894492 GTAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.56, C:0.18, G:0.03, T:0.24
Consensus pattern (15 bp):
ATTTCACAACAAAAA
Found at i:18909902 original size:11 final size:11
Alignment explanation
Indices: 18909886--18909928 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
18909876 TTTATTATTA
18909886 TTATTATTTTT
1 TTATTATTTTT
* *
18909897 TTATTAATCTT
1 TTATTATTTTT
18909908 TTATTATTTTGT
1 TTATTATTTT-T
18909920 TTATTATTT
1 TTATTATTT
18909929 AATAATTCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (11 bp):
TTATTATTTTT
Found at i:18912397 original size:20 final size:20
Alignment explanation
Indices: 18912360--18912396 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
18912350 ATTGTGTTAC
*
18912360 ATATTAATTTATAATTTTGT
1 ATATGAATTTATAATTTTGT
18912380 ATATGAATTT-TAATTTT
1 ATATGAATTTATAATTTT
18912397 TTTGTTGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
ATATGAATTTATAATTTTGT
Found at i:18912644 original size:26 final size:26
Alignment explanation
Indices: 18912616--18912664 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
18912606 CTAAAAAAAA
*
18912616 AAAATATAGGTTTGAAAA-TTTTATT
1 AAAATATAAGTTTGAAAACTTTTATT
18912641 AAAATATAAGTTTGAAAACTTTTA
1 AAAATATAAGTTTGAAAACTTTTA
18912665 ATTTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41
Consensus pattern (26 bp):
AAAATATAAGTTTGAAAACTTTTATT
Found at i:18916459 original size:19 final size:19
Alignment explanation
Indices: 18916435--18916481 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
18916425 TATCCACCTT
*
18916435 AAATGTATCAGTT-ACCACC
1 AAATGTATCACTTCACCA-C
*
18916454 AAATGTA-CCCTTCACCAC
1 AAATGTATCACTTCACCAC
18916472 AAATGTATCA
1 AAATGTATCA
18916482 TCCTCAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.38, C:0.28, G:0.09, T:0.26
Consensus pattern (19 bp):
AAATGTATCACTTCACCAC
Found at i:18917721 original size:32 final size:34
Alignment explanation
Indices: 18917685--18917748 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
18917675 AACCCTTTTT
18917685 TTCTTTTG-TCTTTTTTTTTTT-GTTTTTGTTCA
1 TTCTTTTGTTCTTTTTTTTTTTGGTTTTTGTTCA
*
18917717 TTCTTTTGTTTTTTTTTTTTTTGGTTTTTGTT
1 TTCTTTTGTTCTTTTTTTTTTTGGTTTTTGTT
18917749 TTTTTAGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 8 0.28
33 12 0.41
34 9 0.31
ACGTcount: A:0.02, C:0.06, G:0.11, T:0.81
Consensus pattern (34 bp):
TTCTTTTGTTCTTTTTTTTTTTGGTTTTTGTTCA
Found at i:18917758 original size:9 final size:8
Alignment explanation
Indices: 18917695--18917760 Score: 57
Period size: 7 Copynumber: 8.2 Consensus size: 8
18917685 TTCTTTTGTC
18917695 TTTT-TTT
1 TTTTGTTT
18917702 TTTTGTTT
1 TTTTGTTT
* *
18917710 TTGTTCATTC
1 TT-TT-GTTT
18917720 TTTTGTTT
1 TTTTGTTT
18917728 TTTT-TTT
1 TTTTGTTT
*
18917735 TTTTG-GT
1 TTTTGTTT
18917742 TTTTGTTT
1 TTTTGTTT
18917750 TTTTAGTTT
1 TTTT-GTTT
18917759 TT
1 TT
18917761 ACTTTTTCAG
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
7 17 0.36
8 16 0.34
9 10 0.21
10 4 0.09
ACGTcount: A:0.03, C:0.03, G:0.11, T:0.83
Consensus pattern (8 bp):
TTTTGTTT
Found at i:18917766 original size:22 final size:22
Alignment explanation
Indices: 18917720--18917767 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
18917710 TTGTTCATTC
** **
18917720 TTTTGTTTTTTTTTTTTTTGGT
1 TTTTGTTTTTTTAGTTTTTACT
18917742 TTTTGTTTTTTTAGTTTTTACT
1 TTTTGTTTTTTTAGTTTTTACT
18917764 TTTT
1 TTTT
18917768 CAGTTTTAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.04, C:0.02, G:0.10, T:0.83
Consensus pattern (22 bp):
TTTTGTTTTTTTAGTTTTTACT
Found at i:18917767 original size:34 final size:34
Alignment explanation
Indices: 18917693--18917759 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
18917683 TTTTCTTTTG
* *
18917693 TCTTTTTTTTTTTGTTTTTGTTCATTCTTTTGTTT
1 TCTTTTTTTTTTGGTTTTTGTT-ATTCTTTAGTTT
18917728 T-TTTTTTTTTTGGTTTTTGTT-TT-TTTAGTTT
1 TCTTTTTTTTTTGGTTTTTGTTATTCTTTAGTTT
18917759 T
1 T
18917760 TACTTTTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 8 0.27
32 2 0.07
34 19 0.63
35 1 0.03
ACGTcount: A:0.03, C:0.04, G:0.10, T:0.82
Consensus pattern (34 bp):
TCTTTTTTTTTTGGTTTTTGTTATTCTTTAGTTT
Found at i:18917892 original size:35 final size:35
Alignment explanation
Indices: 18917844--18917974 Score: 95
Period size: 36 Copynumber: 3.7 Consensus size: 35
18917834 CAGGATAATT
* * *
18917844 CCATAAATTAAAAATAAAGAACGATCGAGATAACA
1 CCATAAGTCAAAAATAAAGAACGACCGAGATAACA
* *
18917879 CCATAAGTCAAAAAATAAGGAAC-AGCCAAGATAACA
1 CCATAAGTC-AAAAATAAAGAACGA-CCGAGATAACA
**** * * *
18917915 CTGCGAGTTAAAAAATAAAGAA-GACCGAGACAATA
1 CCATAAG-TCAAAAATAAAGAACGACCGAGATAACA
*
18917950 CCATAAGTCAAGTAATAAAGAACGA
1 CCATAAGTCAA-AAATAAAGAACGA
18917975 TTAGGATAAT
Statistics
Matches: 70, Mismatches: 20, Indels: 11
0.69 0.20 0.11
Matches are distributed among these distances:
34 3 0.04
35 28 0.40
36 38 0.54
37 1 0.01
ACGTcount: A:0.54, C:0.16, G:0.15, T:0.15
Consensus pattern (35 bp):
CCATAAGTCAAAAATAAAGAACGACCGAGATAACA
Found at i:18918419 original size:32 final size:31
Alignment explanation
Indices: 18918323--18918420 Score: 99
Period size: 32 Copynumber: 3.1 Consensus size: 31
18918313 ACTAGGTTTA
*
18918323 AATTTTCATTGGTGCTAGATAATCTAAGCCTG
1 AATTTTCATTGGTGCTAGATAATCTAAG-CTT
* *
18918355 AATTTTCATTGAGTGCTAGCTAAAT-TAGGCTT
1 AATTTTCATTG-GTGCTAGAT-AATCTAAGCTT
* * *
18918387 ATGTTTTCATTGGTGCTGGATAATCTATGCTT
1 A-ATTTTCATTGGTGCTAGATAATCTAAGCTT
18918419 AA
1 AA
18918421 AACTTCATTG
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
31 3 0.06
32 28 0.52
33 20 0.37
34 3 0.06
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (31 bp):
AATTTTCATTGGTGCTAGATAATCTAAGCTT
Found at i:18918451 original size:65 final size:65
Alignment explanation
Indices: 18918277--18918452 Score: 167
Period size: 65 Copynumber: 2.7 Consensus size: 65
18918267 GTATGTCAGC
* * * ** * **
18918277 TAATCTGAGCTTAAATCTTCATTCGA-TGCCAATTAAACTAGGTTTAAATTTTCATTGGTGCTAG
1 TAATCTAAGCCTAAAACTTCATT-GAGTGCCAGCTAAACTAGGCTTATGTTTTCATTGGTGCTAG
18918341 A
65 A
* ** * * *
18918342 TAATCTAAGCCTGAATTTTCATTGAGTGCTAGCTAAATTAGGCTTATGTTTTCATTGGTGCTGGA
1 TAATCTAAGCCTAAAACTTCATTGAGTGCCAGCTAAACTAGGCTTATGTTTTCATTGGTGCTAGA
* * *
18918407 TAATCTATGCTTAAAACTTCATTGAGTGCCAGGC-AAACTGGGCTTA
1 TAATCTAAGCCTAAAACTTCATTGAGTGCCA-GCTAAACTAGGCTTA
18918453 AATCTTTTCA
Statistics
Matches: 89, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
64 2 0.02
65 85 0.96
66 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (65 bp):
TAATCTAAGCCTAAAACTTCATTGAGTGCCAGCTAAACTAGGCTTATGTTTTCATTGGTGCTAGA
Found at i:18918494 original size:67 final size:67
Alignment explanation
Indices: 18918407--18918654 Score: 203
Period size: 67 Copynumber: 3.8 Consensus size: 67
18918397 TGGTGCTGGA
* *
18918407 TAATCTATGCTTAAAACTTCATTGAGTGCCAGGC-AAACTGGGCTTAAATCTTTTCATGAGGGCC
1 TAATCTAGGCTTAAATCTTCATTGAGTGCCA-GCTAAACTGGGCTTAAATCTTTTCATGAGGGCC
*
18918471 ATG
65 AAG
* * * * *
18918474 TAATTTAGGCTTAAATCTTCATT-AGGTGCTAGC-CAACTTGGGC-TCAA-C-TTTCATTG-GTG
1 TAATCTAGGCTTAAATCTTCATTGA-GTGCCAGCTAAAC-TGGGCTTAAATCTTTTCA-TGAGGG
18918533 CCAAG
63 CCAAG
* * * * * *
18918538 TAATCTAGGCTTAAATTTTCTTTGAGTGCCAACTAATCTGGG-TGCAAATCTTTCCATGAGGGCC
1 TAATCTAGGCTTAAATCTTCATTGAGTGCCAGCTAAACTGGGCT-TAAATCTTTTCATGAGGGCC
*
18918602 AGG
65 AAG
* * *
18918605 TAATCT-GACCTT-AATTTTCATTG-GTGCCAGCTAAACTGAGCTTAAATCTT
1 TAATCTAG-GCTTAAATCTTCATTGAGTGCCAGCTAAACTGGGCTTAAATCTT
18918655 CATTGGGTGC
Statistics
Matches: 143, Mismatches: 26, Indels: 26
0.73 0.13 0.13
Matches are distributed among these distances:
64 41 0.29
65 29 0.20
66 24 0.17
67 49 0.34
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (67 bp):
TAATCTAGGCTTAAATCTTCATTGAGTGCCAGCTAAACTGGGCTTAAATCTTTTCATGAGGGCCA
AG
Found at i:18918649 original size:31 final size:33
Alignment explanation
Indices: 18918599--18918668 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 33
18918589 TTCCATGAGG
* * *
18918599 GCCAGGTAATCTGACCTT-AATTTTCATT-GGT
1 GCCAGCTAAACTGACCTTAAATCTTCATTGGGT
*
18918630 GCCAGCTAAACTGAGCTTAAATCTTCATTGGGT
1 GCCAGCTAAACTGACCTTAAATCTTCATTGGGT
18918663 GCCAGC
1 GCCAGC
18918669 CAACCTAGGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 15 0.45
32 9 0.27
33 9 0.27
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (33 bp):
GCCAGCTAAACTGACCTTAAATCTTCATTGGGT
Found at i:18918667 original size:33 final size:33
Alignment explanation
Indices: 18918243--18918687 Score: 95
Period size: 33 Copynumber: 13.6 Consensus size: 33
18918233 TTGATGCTAA
* * * ** *
18918243 CTAAACTGGGCTTAAATTTTCACTGTATGTCAG
1 CTAAACTGAGCTTAAATCTTCATTGGGTGCCAG
* * * *
18918276 CTAATCTGAGCTTAAATCTTCATTCGATGCCAA
1 CTAAACTGAGCTTAAATCTTCATTGGGTGCCAG
* * * *
18918309 TTAAACT-AGGTTTAAATTTTCATT-GGTGCTAG
1 CTAAACTGA-GCTTAAATCTTCATTGGGTGCCAG
* * * * * * * *
18918341 ATAATCTAAGCCTGAATTTTCATTGAGTGCTAG
1 CTAAACTGAGCTTAAATCTTCATTGGGTGCCAG
* ** * **
18918374 CTAAA-TTAGGCTTATGTTTTCATT-GGTGCTGG
1 CTAAACTGA-GCTTAAATCTTCATTGGGTGCCAG
* * * *
18918406 ATAATCT-ATGCTTAAAACTTCATTGAGTGCCAGG
1 CTAAACTGA-GCTTAAATCTTCATTGGGTGCCA-G
*
18918440 C-AAACTGGGCTTAAATCTTTTCA-TGAGG-GCCATG
1 CTAAACTGAGCTTAAATC--TTCATTG-GGTGCCA-G
* * * *
18918474 -T-AATTTAGGCTTAAATCTTCATTAGGTGCTAG
1 CTAAACTGA-GCTTAAATCTTCATTGGGTGCCAG
* * * *
18918506 C-CAACTTGGGCTCAACT-TTCATT-GGTGCCAAG
1 CTAAAC-TGAGCTTAAATCTTCATTGGGTGCC-AG
* * * * *
18918538 -TAATCT-AGGCTTAAATTTTCTTTGAGTGCCAA
1 CTAAACTGA-GCTTAAATCTTCATTGGGTGCCAG
* * *
18918570 CTAATCTG-GGTGCAAATCTTTCCA-TGAGG-GCCAG
1 CTAAACTGAGCT-TAAATC-TT-CATTG-GGTGCCAG
* * * *
18918604 GTAATCTGACCTT-AATTTTCATT-GGTGCCAG
1 CTAAACTGAGCTTAAATCTTCATTGGGTGCCAG
18918635 CTAAACTGAGCTTAAATCTTCATTGGGTGCCAG
1 CTAAACTGAGCTTAAATCTTCATTGGGTGCCAG
* *
18918668 CCAACCT-AGGCTTAAATCTT
1 CTAAACTGA-GCTTAAATCTT
18918688 TTCATGAGGT
Statistics
Matches: 295, Mismatches: 82, Indels: 70
0.66 0.18 0.16
Matches are distributed among these distances:
30 2 0.01
31 29 0.10
32 84 0.28
33 139 0.47
34 33 0.11
35 8 0.03
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (33 bp):
CTAAACTGAGCTTAAATCTTCATTGGGTGCCAG
Found at i:18918699 original size:35 final size:34
Alignment explanation
Indices: 18918619--18918699 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
18918609 CTGACCTTAA
* *
18918619 TTTTCATTGGTGCCAGCTAAACTGAGCTTAAATC
1 TTTTCATGGGTGCCAGCCAAACTGAGCTTAAATC
*
18918653 --TTCATTGGGTGCCAGCCAACCT-AGGCTTAAATC
1 TTTTCA-TGGGTGCCAGCCAAACTGA-GCTTAAATC
18918686 TTTTCATGAGGTGC
1 TTTTCATG-GGTGC
18918700 TGGATAAACT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
32 5 0.13
33 23 0.59
34 2 0.05
35 9 0.23
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (34 bp):
TTTTCATGGGTGCCAGCCAAACTGAGCTTAAATC
Found at i:18918956 original size:35 final size:35
Alignment explanation
Indices: 18918853--18918966 Score: 95
Period size: 35 Copynumber: 3.2 Consensus size: 35
18918843 AGGTGCTAGT
* * * *
18918853 TTTAAATCTTTGCATGATGTACCAACTAAACTGGG
1 TTTAAATCTTTTCATAATGTGCTAACTAAACTGGG
* * * *
18918888 TATAAATC-TTTCATTCATTGATGCTAGCCAAACTGGG
1 TTTAAATCTTTTCA-T-AATG-TGCTAACTAAACTGGG
* *
18918925 TTTAAATCTTTTCATAATGTGCTAAATAAACTAGG
1 TTTAAATCTTTTCATAATGTGCTAACTAAACTGGG
*
18918960 CTTAAAT
1 TTTAAAT
18918967 TTCTATTGAT
Statistics
Matches: 60, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
34 4 0.07
35 26 0.43
36 5 0.08
37 20 0.33
38 5 0.08
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (35 bp):
TTTAAATCTTTTCATAATGTGCTAACTAAACTGGG
Found at i:18919137 original size:34 final size:35
Alignment explanation
Indices: 18919089--18919163 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 35
18919079 GTCAAACCAA
* *
18919089 GCTTAAATCTTTTCATGAGGTACCAGATAAATTGG
1 GCTTAAATCTTTTCATGAAGTACCAGATAAACTGG
* *
18919124 GCTTAAATC-TTTCATTAAGTGCCAGATAAACTGG
1 GCTTAAATCTTTTCATGAAGTACCAGATAAACTGG
18919158 GCTTAA
1 GCTTAA
18919164 GTTCTCAAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
34 27 0.75
35 9 0.25
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (35 bp):
GCTTAAATCTTTTCATGAAGTACCAGATAAACTGG
Found at i:18920058 original size:21 final size:20
Alignment explanation
Indices: 18920030--18920097 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 20
18920020 TTTTTCTTTG
18920030 TTTT-TCTTCATTCTTTCAT
1 TTTTCTCTTCATTCTTTCAT
** **
18920049 TCTTTCTCTTTTTTCTCACAT
1 T-TTTCTCTTCATTCTTTCAT
*
18920070 TTTTCTTTTGCATTCTTTCACT
1 TTTTCTCTT-CATTCTTTCA-T
18920092 TTTTCT
1 TTTTCT
18920098 TTTCTCTGAG
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
19 1 0.03
20 10 0.28
21 18 0.50
22 7 0.19
ACGTcount: A:0.09, C:0.24, G:0.01, T:0.66
Consensus pattern (20 bp):
TTTTCTCTTCATTCTTTCAT
Found at i:18920604 original size:10 final size:9
Alignment explanation
Indices: 18920564--18920624 Score: 54
Period size: 9 Copynumber: 6.8 Consensus size: 9
18920554 ATAATAACCA
*
18920564 TTTTTTTCT
1 TTTTTTTGT
18920573 TTTTTTT-T
1 TTTTTTTGT
*
18920581 ATTTTTT-T
1 TTTTTTTGT
*
18920589 TATTTTTGT
1 TTTTTTTGT
*
18920598 GTTTTTTGT
1 TTTTTTTGT
18920607 TTTGTTTTGT
1 TTT-TTTTGT
18920617 TTTGTTTT
1 TTT-TTTT
18920625 TGACATGTCC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
8 13 0.30
9 17 0.39
10 14 0.32
ACGTcount: A:0.03, C:0.02, G:0.10, T:0.85
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:18920620 original size:24 final size:23
Alignment explanation
Indices: 18920574--18920625 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
18920564 TTTTTTTCTT
*
18920574 TTTTTTTATTTTTTTTATTTTTG
1 TTTTTTTATTTTTTTTAGTTTTG
*
18920597 TGTTTTTTGTTTTGTTTT-GTTTTG
1 T-TTTTTTATTTT-TTTTAGTTTTG
18920621 TTTTT
1 TTTTT
18920626 GACATGTCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 5 0.20
24 16 0.64
25 4 0.16
ACGTcount: A:0.04, C:0.00, G:0.12, T:0.85
Consensus pattern (23 bp):
TTTTTTTATTTTTTTTAGTTTTG
Found at i:18920998 original size:73 final size:71
Alignment explanation
Indices: 18920922--18921080 Score: 167
Period size: 73 Copynumber: 2.2 Consensus size: 71
18920912 GTCAAGCCAA
* * * *
18920922 TTTTAAGGTAAAGAGGTAAAAAGTTGGTAAATTTCATAATCAACTTACCCTTGAGACACATGGGC
1 TTTTAAGGTAAAGAGCTAAAAAGTTGGTAAA--TC-TAAGCAACATACCCTTGAGACACATGAGC
*
18920987 TAGGCTAAT
63 CAGGCTAAT
** * * * *
18920996 TTTTTTGGATAAAAGAGCTAAAAGGTTGGTAAATCTGAGCAACATGCCCTTGAGACACTTGAGCC
1 TTTTAAGG-T-AAAGAGCTAAAAAGTTGGTAAATCTAAGCAACATACCCTTGAGACACATGAGCC
18921061 AGGCTAAT
64 AGGCTAAT
18921069 TTTTAA-GTAAAG
1 TTTTAAGGTAAAG
18921081 GGTTGAAAGT
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
70 4 0.06
71 1 0.01
72 1 0.01
73 35 0.50
74 8 0.11
75 1 0.01
76 20 0.29
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (71 bp):
TTTTAAGGTAAAGAGCTAAAAAGTTGGTAAATCTAAGCAACATACCCTTGAGACACATGAGCCAG
GCTAAT
Found at i:18921027 original size:76 final size:73
Alignment explanation
Indices: 18920931--18921072 Score: 176
Period size: 73 Copynumber: 1.9 Consensus size: 73
18920921 ATTTTAAGGT
* * * * *
18920931 AAAGAGGTAAAAAGTTGGTAAATTTCATAATCAACTTACCCTTGAGACACATGGGCTAGGCTAAT
1 AAAGAGCTAAAAAGTTGGTAAA--TC-TAAGCAACATACCCTTGAGACACATGAGCCAGGCTAAT
18920996 TTTTTTGGATA
63 TTTTTTGGATA
* * * *
18921007 AAAGAGCTAAAAGGTTGGTAAATCTGAGCAACATGCCCTTGAGACACTTGAGCCAGGCTAATTTT
1 AAAGAGCTAAAAAGTTGGTAAATCTAAGCAACATACCCTTGAGACACATGAGCCAGGCTAATTTT
18921072 T
66 T
18921073 AAGTAAAGGG
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
73 35 0.61
74 2 0.04
76 20 0.35
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (73 bp):
AAAGAGCTAAAAAGTTGGTAAATCTAAGCAACATACCCTTGAGACACATGAGCCAGGCTAATTTT
TTTGGATA
Found at i:18921489 original size:14 final size:13
Alignment explanation
Indices: 18921472--18921519 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 13
18921462 ATCATAAAAC
18921472 TTTTTTTTTCATTTT
1 TTTTTTTTTC--TTT
18921487 TTTGTTTTTTCTTT
1 TTT-TTTTTTCTTT
*
18921501 TTCTTTCTTTCTTT
1 TT-TTTTTTTCTTT
18921515 TTTTT
1 TTTTT
18921520 AGGGCATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 3 0.10
14 16 0.53
15 4 0.13
16 7 0.23
ACGTcount: A:0.02, C:0.10, G:0.02, T:0.85
Consensus pattern (13 bp):
TTTTTTTTTCTTT
Found at i:18921790 original size:15 final size:15
Alignment explanation
Indices: 18921770--18921805 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
18921760 GATGACAATC
18921770 AAAGTTACAAAATTA
1 AAAGTTACAAAATTA
18921785 AAAGTTACAAAATTA
1 AAAGTTACAAAATTA
18921800 AAAGTT
1 AAAGTT
18921806 CCTCATTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.58, C:0.06, G:0.08, T:0.28
Consensus pattern (15 bp):
AAAGTTACAAAATTA
Found at i:18922668 original size:39 final size:39
Alignment explanation
Indices: 18922591--18922668 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
18922581 CACATGTACC
* * * *
18922591 TAAGGTTGACTATCAAAAGGTCCATCACTAATGTAAGGT
1 TAAGGTTGACTAACAAAAGGTCCAGCACAAATGAAAGGT
*
18922630 TAAGGTTGACTAACAGAAGGTCCAGCA-AAAGTGAAAGGT
1 TAAGGTTGACTAACAAAAGGTCCAGCACAAA-TGAAAGGT
18922669 AGTATGGCTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
38 2 0.06
39 31 0.94
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (39 bp):
TAAGGTTGACTAACAAAAGGTCCAGCACAAATGAAAGGT
Found at i:18923064 original size:3 final size:3
Alignment explanation
Indices: 18923051--18923086 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
18923041 TGGTATAATC
* *
18923051 ATT ACT ATT ATT ATT ATT ATT AGT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
18923087 GTTAATTTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:18927431 original size:19 final size:21
Alignment explanation
Indices: 18927407--18927446 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
18927397 TTACCATCTA
18927407 TTATTA-TTTA-TTAATATTT
1 TTATTATTTTATTTAATATTT
18927426 TTATTATTTTATTTAATATTT
1 TTATTATTTTATTTAATATTT
18927447 AATAATTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 4 0.21
21 9 0.47
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (21 bp):
TTATTATTTTATTTAATATTT
Found at i:18927447 original size:19 final size:18
Alignment explanation
Indices: 18927407--18927446 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
18927397 TTACCATCTA
18927407 TTATTATTTATTAATATTT
1 TTATTATTTATTAATA-TT
18927426 TTATTATTTTATTTAATATT
1 TTATTA-TTTA-TTAATATT
18927446 T
1 T
18927447 AATAATTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 7 0.37
21 6 0.32
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTATTATTTATTAATATT
Found at i:18927454 original size:20 final size:20
Alignment explanation
Indices: 18927413--18927454 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
18927403 TCTATTATTA
* *
18927413 TTTATTAATATTTTTATTAT
1 TTTATTAATATTTTAATAAT
18927433 TTTATTTAATA-TTTAATAAT
1 TTTA-TTAATATTTTAATAAT
18927453 TT
1 TT
18927455 CTCAACATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTATTAATATTTTAATAAT
Done.