Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 113 of 147
Found at i:20363837 original size:14 final size:14
Alignment explanation
Indices: 20363813--20363864 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
20363803 TCATTATTAG
20363813 TTTTGATTTTATTT-
1 TTTT-ATTTTATTTA
20363827 TTCTTATTTTATTTA
1 TT-TTATTTTATTTA
*
20363842 TTTTATTTTGTTTA
1 TTTTATTTTATTTA
20363856 TTTTTATTT
1 -TTTTATTT
20363865 ACTCTTATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
14 22 0.65
15 12 0.35
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (14 bp):
TTTTATTTTATTTA
Found at i:20368910 original size:55 final size:55
Alignment explanation
Indices: 20368803--20368940 Score: 181
Period size: 55 Copynumber: 2.5 Consensus size: 55
20368793 CTCATTTTCA
* * * *
20368803 ATCTCAGCTTAATCTAGATCATTTTTCTTACTTGTGGTTTAATCTCTATCATTTG
1 ATCTCAGCTTAGTCTAAATCATTTTTCTTACTTGTGGTTTAATCTCCATCATTCG
20368858 ATCTCAGCTTAGTCTAAATCATTTTT-TTGACTTGTGGTTTAATC-CCAGTCATTCG
1 ATCTCAGCTTAGTCTAAATCATTTTTCTT-ACTTGTGGTTTAATCTCCA-TCATTCG
* * *
20368913 ATCTCGGCTCAGTCCAAATCATTTTTCT
1 ATCTCAGCTTAGTCTAAATCATTTTTCT
20368941 AACCCGTAGT
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
54 4 0.05
55 68 0.93
56 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.45
Consensus pattern (55 bp):
ATCTCAGCTTAGTCTAAATCATTTTTCTTACTTGTGGTTTAATCTCCATCATTCG
Found at i:20369260 original size:86 final size:86
Alignment explanation
Indices: 20369071--20369403 Score: 290
Period size: 86 Copynumber: 3.9 Consensus size: 86
20369061 CATTTTTCTT
* * * * *
20369071 ACCTTTTTGAAACTTGAAATTTTATGACA-CTTTCATTCTTGTGAATCTAAAAGTCCTTGCAAAC
1 ACCTTTGTGAAACTTGAAATCTTATGA-ATCTTTCATTCTTGTCAATCTAAAAGTTCTTGCGAAC
*
20369135 TTG-AA--TTTGCAAATCTAAA
65 TTGAAATCTTTGCAGATCTAAA
* * * * *
20369154 ACCTCTGTAAAACTTGAAATCTTATGAATCTTTAATTCTTGTCAATATAAAAGTTCTTGTGAACT
1 ACCTTTGTGAAACTTGAAATCTTATGAATCTTTCATTCTTGTCAATCTAAAAGTTCTTGCGAACT
20369219 TGAAATCTTTGCAGATCTAAA
66 TGAAATCTTTGCAGATCTAAA
* * * *
20369240 ACCTTTGTGAAACTTGAAATCTTGTAAATCTTTCCTTCTTG-CAAATCTAAAAG-TCATTACGAA
1 ACCTTTGTGAAACTTGAAATCTTATGAATCTTTCATTCTTGTC-AATCTAAAAGTTC-TTGCGAA
* * *
20369303 GC-TAAAATCTTTAC-GAATTTAAA
64 -CTTGAAATCTTTGCAG-ATCTAAA
* * * * * * ** *
20369326 ACCTTTGTGAAACTTGAAATTTTGTAAATCTTCCATTCATGTGAATCTGAAAACCT-TTGCAAAT
1 ACCTTTGTGAAACTTGAAATCTTATGAATCTTTCATTCTTGTCAATCT-AAAAGTTCTTGCGAA-
20369390 CTTG-AATCTTTGCA
64 CTTGAAATCTTTGCA
20369404 ATTTTGTTAA
Statistics
Matches: 203, Mismatches: 34, Indels: 22
0.78 0.13 0.08
Matches are distributed among these distances:
82 1 0.00
83 55 0.27
84 2 0.01
85 4 0.02
86 134 0.66
87 6 0.03
88 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (86 bp):
ACCTTTGTGAAACTTGAAATCTTATGAATCTTTCATTCTTGTCAATCTAAAAGTTCTTGCGAACT
TGAAATCTTTGCAGATCTAAA
Found at i:20369318 original size:17 final size:18
Alignment explanation
Indices: 20369286--20369319 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
20369276 TCTTGCAAAT
20369286 CTAAAAGTCATTACGAAG
1 CTAAAAGTCATTACGAAG
*
20369304 CTAAAA-TCTTTACGAA
1 CTAAAAGTCATTACGAA
20369320 TTTAAAACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (18 bp):
CTAAAAGTCATTACGAAG
Found at i:20369916 original size:51 final size:51
Alignment explanation
Indices: 20369856--20369953 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
20369846 TTAATTATAA
*
20369856 TTGAGAGATTTTTAGGATTTAGTTCCAAAATCAATTCACATTAAAATGATG
1 TTGAGAGATTTTTAGGATTTAATTCCAAAATCAATTCACATTAAAATGATG
* * *
20369907 TTGAGAGATTTTTTGGATTTAATTTCAGAATCAATTCACATTAAAAT
1 TTGAGAGATTTTTAGGATTTAATTCCAAAATCAATTCACATTAAAAT
20369954 CAAAACAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (51 bp):
TTGAGAGATTTTTAGGATTTAATTCCAAAATCAATTCACATTAAAATGATG
Found at i:20370489 original size:14 final size:13
Alignment explanation
Indices: 20370457--20370498 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
20370447 TCATTATTAG
*
20370457 TTTTGATTTTATT
1 TTTTTATTTTATT
20370470 TTTTTATTTTATT
1 TTTTTATTTTATT
20370483 TTGTTTATTTTTATT
1 TT-TTTA-TTTTATT
20370498 T
1 T
20370499 ACTTTTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 14 0.54
14 4 0.15
15 8 0.31
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.81
Consensus pattern (13 bp):
TTTTTATTTTATT
Found at i:20370495 original size:20 final size:20
Alignment explanation
Indices: 20370463--20370520 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
20370453 TTAGTTTTGA
20370463 TTTTATT-TTTTTATTTTA-
1 TTTTATTATTTTTATTTTAC
*
20370481 TTTTGTTTATTTTTA-TTTAC
1 TTTT-ATTATTTTTATTTTAC
20370501 TTTTATTATTTCTTATTTTA
1 TTTTATTATTT-TTATTTTA
20370521 AATTGAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
18 4 0.12
19 12 0.36
20 13 0.39
21 4 0.12
ACGTcount: A:0.17, C:0.03, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTTATTATTTTTATTTTAC
Found at i:20371351 original size:140 final size:140
Alignment explanation
Indices: 20371089--20371364 Score: 372
Period size: 140 Copynumber: 2.0 Consensus size: 140
20371079 ATTTGAAATC
* * * * * *
20371089 AAACCGGTACCATCTTTTGAAGGGTATTGTGAGCTTGCTTTAACCTTCCTCATGCATAATCATAC
1 AAACCGGTACCATCTTTTGAAGGGTACTATGAGCATGCTATAAACTTCCTCATGCATAACCATAC
* * *
20371154 TCTCGAGCCTAAAATCTAGTTTTACGGATCATAATTTACTATTTAAATATACCTAAGTCAATCTT
66 TCTCGAGCCTAAAATCTAGTTTCACGGATCAGAATCTACTATTTAAATATACCTAAGTCAATCTT
20371219 GAAACTATTT
131 GAAACTATTT
* * * * * **
20371229 AAACTGGTATCATCTTTTGATGGGTGCTATGAGCATGCTATAAACTTTCTCATGTGTAACCATAC
1 AAACCGGTACCATCTTTTGAAGGGTACTATGAGCATGCTATAAACTTCCTCATGCATAACCATAC
* ** *
20371294 TCTTGAGCCTAAAATCTAGTTTCGTGGATTAGAATCTACTATTTAAATATACCTAAGTCAATCTT
66 TCTCGAGCCTAAAATCTAGTTTCACGGATCAGAATCTACTATTTAAATATACCTAAGTCAATCTT
20371359 GAAACT
131 GAAACT
20371365 CTTTTTTAAA
Statistics
Matches: 116, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
140 116 1.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (140 bp):
AAACCGGTACCATCTTTTGAAGGGTACTATGAGCATGCTATAAACTTCCTCATGCATAACCATAC
TCTCGAGCCTAAAATCTAGTTTCACGGATCAGAATCTACTATTTAAATATACCTAAGTCAATCTT
GAAACTATTT
Found at i:20374766 original size:2 final size:2
Alignment explanation
Indices: 20374761--20374795 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
20374751 TATGTGTGTG
* *
20374761 TA TA TA TA TA TA TA TA TA TA TG TA TA CA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20374796 TTATGCACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:20374806 original size:16 final size:14
Alignment explanation
Indices: 20374761--20374799 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
20374751 TATGTGTGTG
* *
20374761 TATATATATATATA
1 TATATATTTATACA
*
20374775 TATATATGTATACA
1 TATATATTTATACA
20374789 TATATATTTAT
1 TATATATTTAT
20374800 GCACATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (14 bp):
TATATATTTATACA
Found at i:20386318 original size:39 final size:39
Alignment explanation
Indices: 20386244--20386322 Score: 115
Period size: 39 Copynumber: 2.0 Consensus size: 39
20386234 TTTGTTGTGC
* * *
20386244 TCACTTTCTTTTTTATAATAGTAAAAATGATTCAATTTT
1 TCACTTTCTGTTTTATAATAATAAAAATGACTCAATTTT
20386283 TCACTTTCTGTTTTATAATAATAAAAAT-AGCTCAATTTT
1 TCACTTTCTGTTTTATAATAATAAAAATGA-CTCAATTTT
20386322 T
1 T
20386323 TATCTTTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.03
39 35 0.97
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.49
Consensus pattern (39 bp):
TCACTTTCTGTTTTATAATAATAAAAATGACTCAATTTT
Found at i:20386984 original size:16 final size:15
Alignment explanation
Indices: 20386957--20386992 Score: 63
Period size: 16 Copynumber: 2.3 Consensus size: 15
20386947 CAGTATTAAA
20386957 AATAATTATAAAATT
1 AATAATTATAAAATT
20386972 AATAATATATAAAATT
1 AATAAT-TATAAAATT
20386988 AATAA
1 AATAA
20386993 AAAATGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
AATAATTATAAAATT
Found at i:20387233 original size:27 final size:27
Alignment explanation
Indices: 20387199--20387272 Score: 84
Period size: 25 Copynumber: 2.9 Consensus size: 27
20387189 TTTTTATTAC
20387199 ATAAATATTAATTATTATATATTAACA
1 ATAAATATTAATTATTATATATTAACA
* * *
20387226 ATCAATATTTA-TATT-TATATT-TCA
1 ATAAATATTAATTATTATATATTAACA
*
20387250 ATAAATATAAATTATTAT-TATTA
1 ATAAATATTAATTATTATATATTA
20387273 TTATTATTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
24 10 0.26
25 14 0.37
26 5 0.13
27 9 0.24
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (27 bp):
ATAAATATTAATTATTATATATTAACA
Found at i:20387274 original size:9 final size:10
Alignment explanation
Indices: 20387261--20387304 Score: 56
Period size: 9 Copynumber: 4.6 Consensus size: 10
20387251 TAAATATAAA
20387261 TTATTATTA-
1 TTATTATTAT
20387270 TTATTATTAT
1 TTATTATTAT
*
20387280 TTATAATTAT
1 TTATTATTAT
*
20387290 TTATTA-CAT
1 TTATTATTAT
20387299 TTATTA
1 TTATTA
20387305 AAATGTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
9 17 0.55
10 14 0.45
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTATTAT
Found at i:20387330 original size:27 final size:27
Alignment explanation
Indices: 20387300--20387353 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
20387290 TTATTACATT
* *
20387300 TATTAAAATGT-AAATATTATTTCTAAC
1 TATTAAAATATAAAATATGATTT-TAAC
20387327 TATTAAAATATAAAATATGATTTTAAC
1 TATTAAAATATAAAATATGATTTTAAC
20387354 AAAATATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 14 0.58
28 10 0.42
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.43
Consensus pattern (27 bp):
TATTAAAATATAAAATATGATTTTAAC
Found at i:20388053 original size:34 final size:34
Alignment explanation
Indices: 20388010--20388094 Score: 93
Period size: 33 Copynumber: 2.5 Consensus size: 34
20388000 GTTATAAATT
* *
20388010 TTTTTGAAAATGAATTTTTGAAAA-ATCATATAAC
1 TTTTCGAAAATGAATTTTTCAAAAGATCATA-AAC
* *
20388044 TTTTCGAAAAT-AAATTTTCAAAAGATTATAAAC
1 TTTTCGAAAATGAATTTTTCAAAAGATCATAAAC
*
20388077 TTTTCTAGAAATGAATTT
1 TTTTCGA-AAATGAATTT
20388095 CTAAAAAGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
33 19 0.45
34 19 0.45
35 4 0.10
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (34 bp):
TTTTCGAAAATGAATTTTTCAAAAGATCATAAAC
Found at i:20388167 original size:35 final size:34
Alignment explanation
Indices: 20388115--20388206 Score: 100
Period size: 35 Copynumber: 2.7 Consensus size: 34
20388105 AAATTTTTGG
*
20388115 AAAAGTTTTATGACTTTTTGAAAATCCATTTCTAA
1 AAAAG-TTTATGACTTTTTGAAAATCCATCTCTAA
* * *
20388150 AAAAGTTTATGACCTTTTT-AGAAATTCGTCTCTTA
1 AAAAGTTTATGA-CTTTTTGA-AAATCCATCTCTAA
20388185 AAAA--TTATGACTTTTTGAAAAT
1 AAAAGTTTATGACTTTTTGAAAAT
20388207 TTATTTTTGG
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
32 10 0.20
33 7 0.14
34 8 0.16
35 25 0.50
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (34 bp):
AAAAGTTTATGACTTTTTGAAAATCCATCTCTAA
Found at i:20388616 original size:15 final size:15
Alignment explanation
Indices: 20388596--20388629 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
20388586 AAAAGCATAA
20388596 CTTTTTCTATTACTT
1 CTTTTTCTATTACTT
*
20388611 CTTTTTTTATTACTT
1 CTTTTTCTATTACTT
20388626 -TTTT
1 CTTTT
20388630 GCCTAAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.74
Consensus pattern (15 bp):
CTTTTTCTATTACTT
Found at i:20388616 original size:48 final size:48
Alignment explanation
Indices: 20388564--20388661 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 48
20388554 ATCTTATAAT
* *
20388564 TTTTTTTATTACTTCTTTGCCTAAAAGCATAACTTTTTCTATTACTTC
1 TTTTTTTATTACTTCTTTGCCTAAAAGAATAACTTTTTCCATTACTTC
*
20388612 TTTTTTTATTACTTTTTTGCCTAAAAGAATAACTTTTTCCATTACTTC
1 TTTTTTTATTACTTCTTTGCCTAAAAGAATAACTTTTTCCATTACTTC
20388660 TT
1 TT
20388662 CTACAATTCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.23, C:0.17, G:0.04, T:0.55
Consensus pattern (48 bp):
TTTTTTTATTACTTCTTTGCCTAAAAGAATAACTTTTTCCATTACTTC
Found at i:20390656 original size:29 final size:29
Alignment explanation
Indices: 20390594--20390684 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 29
20390584 ATTATGATAT
* * ** *
20390594 AAATAAACACAAATAATATCTATATATAC
1 AAATAGACACAACTAATATAAATATATAA
* * *
20390623 GAATAGATACAACTAATATGAATATATAA
1 AAATAGACACAACTAATATAAATATATAA
*
20390652 AAATAGACACGACTAATATAAATATATACA
1 AAATAGACACAACTAATATAAATATATA-A
20390682 AAA
1 AAA
20390685 ACATAAATAA
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.58, C:0.11, G:0.05, T:0.25
Consensus pattern (29 bp):
AAATAGACACAACTAATATAAATATATAA
Found at i:20391036 original size:21 final size:21
Alignment explanation
Indices: 20390994--20391036 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
20390984 TTATTAAATG
* * *
20390994 AGTATTATAATTAAATGTTTA
1 AGTATCATAATTAAAAGATTA
20391015 AGTATCATAATTAAAAGATTA
1 AGTATCATAATTAAAAGATTA
20391036 A
1 A
20391037 AAATTAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (21 bp):
AGTATCATAATTAAAAGATTA
Found at i:20391928 original size:12 final size:12
Alignment explanation
Indices: 20391911--20391940 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
20391901 TGATAAAAAT
20391911 TGTTTATATGGA
1 TGTTTATATGGA
20391923 TGTTTATATGGA
1 TGTTTATATGGA
20391935 TAGTTT
1 T-GTTT
20391941 CTTTTAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.53
Consensus pattern (12 bp):
TGTTTATATGGA
Found at i:20392292 original size:15 final size:15
Alignment explanation
Indices: 20392272--20392323 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
20392262 AACATAAATT
20392272 TTAAATTCAAATATA
1 TTAAATTCAAATATA
** *
20392287 TTAAATTTTAATTTA
1 TTAAATTCAAATATA
* **
20392302 TCATTTTCAAATATA
1 TTAAATTCAAATATA
20392317 TTAAATT
1 TTAAATT
20392324 TTAATTTATC
Statistics
Matches: 25, Mismatches: 12, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAAATTCAAATATA
Found at i:20392313 original size:30 final size:30
Alignment explanation
Indices: 20392277--20392338 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
20392267 AAATTTTAAA
20392277 TTCAAATATATTAAATTTTAATTTATCATT
1 TTCAAATATATTAAATTTTAATTTATCATT
20392307 TTCAAATATATTAAATTTTAATTTATCATT
1 TTCAAATATATTAAATTTTAATTTATCATT
20392337 TT
1 TT
20392339 TTCAACTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (30 bp):
TTCAAATATATTAAATTTTAATTTATCATT
Found at i:20393461 original size:14 final size:15
Alignment explanation
Indices: 20393442--20393479 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
20393432 TAGCTAAACA
20393442 ATATTATTTATA-AT
1 ATATTATTTATAGAT
*
20393456 ATATTATGTATAGAT
1 ATATTATTTATAGAT
20393471 -TATTATTTA
1 ATATTATTTA
20393480 ATTGTAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 19 0.90
15 2 0.10
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (15 bp):
ATATTATTTATAGAT
Found at i:20395201 original size:2 final size:2
Alignment explanation
Indices: 20395194--20395221 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
20395184 CTAATATCTT
20395194 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20395222 AAAAGGAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20399092 original size:23 final size:23
Alignment explanation
Indices: 20399065--20399119 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
20399055 ATTTCTATAA
*
20399065 ACAAATAATAAAATTCATAAAAT
1 ACAAATAATAAAATTAATAAAAT
* * *
20399088 ACAAAAAAAAAAATTAATAACAT
1 ACAAATAATAAAATTAATAAAAT
20399111 A-AAATAATA
1 ACAAATAATA
20399120 TTAATTCTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 6 0.23
23 20 0.77
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22
Consensus pattern (23 bp):
ACAAATAATAAAATTAATAAAAT
Found at i:20405844 original size:20 final size:19
Alignment explanation
Indices: 20405798--20405849 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
20405788 ATGATAGTTT
*
20405798 ATTAGTTTATTATTCAATA
1 ATTAGTTGATTATTCAATA
*
20405817 ATTAGTTGATTATTCAGTA
1 ATTAGTTGATTATTCAATA
20405836 ATGTAGTTGATTAT
1 AT-TAGTTGATTAT
20405850 ACGAATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 19 0.63
20 11 0.37
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.50
Consensus pattern (19 bp):
ATTAGTTGATTATTCAATA
Found at i:20410473 original size:13 final size:12
Alignment explanation
Indices: 20410453--20410488 Score: 63
Period size: 13 Copynumber: 2.9 Consensus size: 12
20410443 TATTACCTTA
20410453 TTATTTTTATTT
1 TTATTTTTATTT
20410465 TTAATTTTTATTT
1 TT-ATTTTTATTT
20410478 TTATTTTTATT
1 TTATTTTTATT
20410489 ACTTGAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (12 bp):
TTATTTTTATTT
Found at i:20410478 original size:5 final size:6
Alignment explanation
Indices: 20410453--20410488 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
20410443 TATTACCTTA
20410453 TTATTT TTATTT TTAATTT TTATTT TTATTT TTATT
1 TTATTT TTATTT TT-ATTT TTATTT TTATTT TTATT
20410489 ACTTGAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:20411272 original size:19 final size:20
Alignment explanation
Indices: 20411230--20411271 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
20411220 TTTGAAAAAA
20411230 TTTTAAAATATTTCTAACAT
1 TTTTAAAATATTTCTAACAT
*
20411250 TTTTAGAATA-TTCTAA-AT
1 TTTTAAAATATTTCTAACAT
20411268 TTTT
1 TTTT
20411272 TTTTTGTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 6 0.29
20 9 0.43
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTTAAAATATTTCTAACAT
Found at i:20411393 original size:14 final size:14
Alignment explanation
Indices: 20411376--20411418 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
20411366 ATTATTCTTA
*
20411376 ATTTTATATTTATT
1 ATTTTGTATTTATT
*
20411390 ATTTTGTTTTTATT
1 ATTTTGTATTTATT
20411404 ATTATTGTATTTATT
1 ATT-TTGTATTTATT
20411419 TTAACATATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 15 0.60
15 10 0.40
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (14 bp):
ATTTTGTATTTATT
Found at i:20412870 original size:24 final size:23
Alignment explanation
Indices: 20412840--20412892 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 23
20412830 CTAATTAAAG
*
20412840 TTTTTTTCAAAGTTTTTTGCTTTT
1 TTTTTTTCAAACTTTTTT-CTTTT
***
20412864 TTTTTTTTTGACTTTTTTCTTTT
1 TTTTTTTCAAACTTTTTTCTTTT
20412887 TTTTTT
1 TTTTTT
20412893 CCTTTTTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.08, C:0.08, G:0.06, T:0.79
Consensus pattern (23 bp):
TTTTTTTCAAACTTTTTTCTTTT
Found at i:20412888 original size:19 final size:20
Alignment explanation
Indices: 20412860--20412905 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
20412850 AGTTTTTTGC
20412860 TTTT-TTTTTTTTTGAC-TT
1 TTTTCTTTTTTTTTGACTTT
**
20412878 TTTTCTTTTTTTTTTCCTTT
1 TTTTCTTTTTTTTTGACTTT
20412898 TTTTCTTT
1 TTTTCTTT
20412906 GACTTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 4 0.17
19 10 0.42
20 10 0.42
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.85
Consensus pattern (20 bp):
TTTTCTTTTTTTTTGACTTT
Found at i:20412888 original size:20 final size:20
Alignment explanation
Indices: 20412863--20412905 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
20412853 TTTTTGCTTT
20412863 TTTTTTTTTTGAC-TTTTTTC
1 TTTTTTTTTT-ACTTTTTTTC
*
20412883 TTTTTTTTTTCCTTTTTTTC
1 TTTTTTTTTTACTTTTTTTC
20412903 TTT
1 TTT
20412906 GACTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.02, C:0.12, G:0.02, T:0.84
Consensus pattern (20 bp):
TTTTTTTTTTACTTTTTTTC
Found at i:20413317 original size:57 final size:56
Alignment explanation
Indices: 20413256--20413390 Score: 166
Period size: 57 Copynumber: 2.4 Consensus size: 56
20413246 ATAACTTTGA
*
20413256 ATATTACCATCGAAAAAAACTCAGATATCACCACT-AAAAAGATGTAAAT-AATTTCAT
1 ATATTACCA-CGAAAAAAACTCAGATATCACCACTGAAAAA-ATGTAAATGAATTT-AG
* * *
20413313 ATATTATCACCAAAAGAAACTCAGATATCACCACTGAAAAAATGTAAATGACTTTAG
1 ATATTACCACGAAAA-AAACTCAGATATCACCACTGAAAAAATGTAAATGAATTTAG
*
20413370 ATATTACCACCGAAGAAAACT
1 ATATTACCA-CGAAAAAAACT
20413391 TGAATATCAC
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
56 5 0.07
57 49 0.73
58 13 0.19
ACGTcount: A:0.48, C:0.19, G:0.09, T:0.24
Consensus pattern (56 bp):
ATATTACCACGAAAAAAACTCAGATATCACCACTGAAAAAATGTAAATGAATTTAG
Found at i:20413398 original size:57 final size:57
Alignment explanation
Indices: 20413280--20413544 Score: 193
Period size: 57 Copynumber: 4.6 Consensus size: 57
20413270 AAAAACTCAG
* * * * *
20413280 ATATCACCACT-AAAAAGATGTAAATAATTTCATATATTATCACCAAA-AGAAAC-TCA
1 ATATCACCAATGAAAAA-ATGTAAATGATTTCAGATATTACCACCAAAGA-AAACTTGA
* *
20413336 GATATCACCACTGAAAAAATGTAAATGACTTT-AGATATTACCACCGAAGAAAACTTGA
1 -ATATCACCAATGAAAAAATGTAAATGA-TTTCAGATATTACCACCAAAGAAAACTTGA
* * * * * ** *
20413394 ATATCA-CTATCAAGAAAATGCAAATGACTTCAAATATCGCCACCAAAGAATA-TTCGA
1 ATATCACCAATGAA-AAAATGTAAATGATTTCAGATATTACCACCAAAGAAAACTT-GA
* ** * ** ** *
20413451 ATATCACCAATGAGAAAATACAAATGATTTCAGATATCACCATTAAAGGTAACTCGA
1 ATATCACCAATGAAAAAATGTAAATGATTTCAGATATTACCACCAAAGAAAACTTGA
*
20413508 ATATCA-CAATCGAAAAAATATAAATGATTTCAGATAT
1 ATATCACCAAT-GAAAAAATGTAAATGATTTCAGATAT
20413545 CACTATTGAA
Statistics
Matches: 168, Mismatches: 30, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
56 12 0.07
57 140 0.83
58 16 0.10
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.25
Consensus pattern (57 bp):
ATATCACCAATGAAAAAATGTAAATGATTTCAGATATTACCACCAAAGAAAACTTGA
Found at i:20413568 original size:57 final size:56
Alignment explanation
Indices: 20413450--20413571 Score: 156
Period size: 57 Copynumber: 2.1 Consensus size: 56
20413440 AGAATATTCG
* *
20413450 AATATCACCAATGAGAAAATACAAATGATTTCAGATATCACCATTAAAGGTAACTCG
1 AATATCA-CAATGAAAAAATACAAATGATTTCAGATATCACCATTAAAGGTAACTCA
* * * *
20413507 AATATCACAATCGAAAAAATATAAATGATTTCAGATATCACTATTGAA-GTAGAGTCA
1 AATATCACAAT-GAAAAAATACAAATGATTTCAGATATCACCATTAAAGGTA-ACTCA
20413564 AATATCAC
1 AATATCAC
20413572 CATTGAGAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
56 7 0.12
57 50 0.88
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (56 bp):
AATATCACAATGAAAAAATACAAATGATTTCAGATATCACCATTAAAGGTAACTCA
Found at i:20413879 original size:11 final size:11
Alignment explanation
Indices: 20413863--20413893 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
20413853 TATAATGATG
20413863 ATGCAAATGCA
1 ATGCAAATGCA
20413874 ATGCAAATGCA
1 ATGCAAATGCA
20413885 ATGCAAATG
1 ATGCAAATG
20413894 TCTTTTACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.19
Consensus pattern (11 bp):
ATGCAAATGCA
Found at i:20421121 original size:13 final size:13
Alignment explanation
Indices: 20421103--20421127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20421093 TATCATATTT
20421103 TATTTATTTTTAC
1 TATTTATTTTTAC
20421116 TATTTATTTTTA
1 TATTTATTTTTA
20421128 TTCATTCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTTATTTTTAC
Found at i:20421170 original size:21 final size:22
Alignment explanation
Indices: 20421100--20421190 Score: 64
Period size: 21 Copynumber: 4.1 Consensus size: 22
20421090 TTTTATCATA
*
20421100 TTTTATTTATTTTTACTATTTA-T
1 TTTTA-TTATTATTA-TATTTATT
* **
20421123 TTTTATTCATTCATTAT-TCTAAA
1 TTTTATT-ATT-ATTATATTTATT
20421146 TTTTA-TATTTATTAT-TTTATT
1 TTTTATTA-TTATTATATTTATT
*
20421167 TTTTATTATTATTGTATTTATT
1 TTTTATTATTATTATATTTATT
20421189 TT
1 TT
20421191 AACATGTCGT
Statistics
Matches: 55, Mismatches: 7, Indels: 13
0.73 0.09 0.17
Matches are distributed among these distances:
21 20 0.36
22 18 0.33
23 14 0.25
24 3 0.05
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.70
Consensus pattern (22 bp):
TTTTATTATTATTATATTTATT
Found at i:20433534 original size:29 final size:30
Alignment explanation
Indices: 20433502--20433581 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
20433492 TTTTAGGAAT
* *
20433502 TTAATTTCTATAGTACTATTTAAAAG-AAC
1 TTAATTTTTATAGTATTATTTAAAAGAAAC
* ** *
20433531 TTAATTTTTATAATATTATTTTTAAGAAAT
1 TTAATTTTTATAGTATTATTTAAAAGAAAC
20433561 TTAATTTTTATAGTATTATTT
1 TTAATTTTTATAGTATTATTT
20433582 TTAAAAAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 21 0.49
30 22 0.51
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.54
Consensus pattern (30 bp):
TTAATTTTTATAGTATTATTTAAAAGAAAC
Found at i:20433553 original size:14 final size:14
Alignment explanation
Indices: 20433534--20433584 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
20433524 AAAGAACTTA
20433534 ATTTTTATAATATT
1 ATTTTTATAATATT
*
20433548 ATTTTTA-AGAAATTT
1 ATTTTTATA-ATA-TT
*
20433563 AATTTTTATAGTATT
1 -ATTTTTATAATATT
20433578 ATTTTTA
1 ATTTTTA
20433585 AAAAAAAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
13 1 0.03
14 16 0.53
15 4 0.13
16 8 0.27
17 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (14 bp):
ATTTTTATAATATT
Found at i:20433567 original size:30 final size:29
Alignment explanation
Indices: 20433490--20433585 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 29
20433480 TCATTCTTTG
* * *
20433490 ATTTTTAGGAATTTAATTTCTATAGTACT
1 ATTTTTAAGAATTTAATTTTTATAGTATT
** * *
20433519 ATTTAAAAGAACTTAATTTTTATAATATT
1 ATTTTTAAGAATTTAATTTTTATAGTATT
20433548 ATTTTTAAGAAATTTAATTTTTATAGTATT
1 ATTTTTAAG-AATTTAATTTTTATAGTATT
20433578 ATTTTTAA
1 ATTTTTAA
20433586 AAAAAAAACA
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
29 29 0.53
30 26 0.47
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (29 bp):
ATTTTTAAGAATTTAATTTTTATAGTATT
Found at i:20435115 original size:39 final size:40
Alignment explanation
Indices: 20435072--20435157 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
20435062 GTTTAATTTA
* * * *
20435072 ATAAATAATTTTTAAAAATTT-TAATCTGATTTTTGAATT
1 ATAAATAAATTTTAAAAATTTCTAATCTCATATTTGAACT
20435111 ATAAATAAATTTTAAAAATTTCTAATCTCATATTTGAACT
1 ATAAATAAATTTTAAAAATTTCTAATCTCATATTTGAACT
*
20435151 ACAAATA
1 ATAAATA
20435158 CGTTGATTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 20 0.49
40 21 0.51
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.44
Consensus pattern (40 bp):
ATAAATAAATTTTAAAAATTTCTAATCTCATATTTGAACT
Found at i:20437917 original size:19 final size:19
Alignment explanation
Indices: 20437867--20437917 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 19
20437857 TAATTGTGTT
*
20437867 TACACCCCACATTTTCTTCTT
1 TACA-CCCACA-TTTCTTCTC
20437888 TACACCC-CATTTC-TCTC
1 TACACCCACATTTCTTCTC
20437905 TACACCCAACATT
1 TACACCC-ACATT
20437918 AAAAACCCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 10 0.37
18 4 0.15
19 6 0.22
20 3 0.11
21 4 0.15
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.35
Consensus pattern (19 bp):
TACACCCACATTTCTTCTC
Found at i:20438157 original size:29 final size:28
Alignment explanation
Indices: 20438114--20438174 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
20438104 TTTGATATGA
20438114 TAAATCTTTGATTTTGTT-TGATCTTGAT
1 TAAATCTTTGATTTTGTTATG-TCTTGAT
* *
20438142 TAAATTTTTAGATTTTGTTATGTTTTGAT
1 TAAATCTTT-GATTTTGTTATGTCTTGAT
20438171 TAAA
1 TAAA
20438175 ATATTTTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 8 0.28
29 19 0.66
30 2 0.07
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.57
Consensus pattern (28 bp):
TAAATCTTTGATTTTGTTATGTCTTGAT
Found at i:20438486 original size:15 final size:17
Alignment explanation
Indices: 20438462--20438497 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
20438452 ATAAAAGGTA
20438462 TTTA-TTTAA-GT-AAT
1 TTTATTTTAAGGTCAAT
20438476 TTTATTTTAAGGTCAAT
1 TTTATTTTAAGGTCAAT
20438493 TTTAT
1 TTTAT
20438498 AATAAAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.21
15 5 0.26
16 2 0.11
17 8 0.42
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (17 bp):
TTTATTTTAAGGTCAAT
Found at i:20443785 original size:3 final size:3
Alignment explanation
Indices: 20443770--20443807 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
20443760 AGGATAAGTA
*
20443770 ATT ATT ATA ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
20443808 AAATAATAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:20446159 original size:31 final size:31
Alignment explanation
Indices: 20446124--20446206 Score: 139
Period size: 31 Copynumber: 2.7 Consensus size: 31
20446114 GTCACTGGGT
*
20446124 GTGATTTAATCCCCAGTAACAAGAGAAGGAC
1 GTGATTTAATCCCCATTAACAAGAGAAGGAC
* *
20446155 GTGATTTAATACCCATTAACAAGAGAAGGAT
1 GTGATTTAATCCCCATTAACAAGAGAAGGAC
20446186 GTGATTTAATCCCCATTAACA
1 GTGATTTAATCCCCATTAACA
20446207 GGAAAAGAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (31 bp):
GTGATTTAATCCCCATTAACAAGAGAAGGAC
Found at i:20447355 original size:21 final size:23
Alignment explanation
Indices: 20447317--20447384 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 23
20447307 AAATTTTACA
* *
20447317 ATATTATTTCTTATATTTTTAAAC
1 ATATTATATATTA-ATTTTTAAAC
* *
20447341 ATATT-TAT-TTAATTTTTGAAG
1 ATATTATATATTAATTTTTAAAC
*
20447362 ATATTATATATTTATTTTGTAAA
1 ATATTATATATTAATTTT-TAAA
20447385 TTATTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
21 13 0.36
22 6 0.17
23 9 0.25
24 8 0.22
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.57
Consensus pattern (23 bp):
ATATTATATATTAATTTTTAAAC
Found at i:20453424 original size:29 final size:31
Alignment explanation
Indices: 20453363--20453429 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 31
20453353 TGATTCACGA
*
20453363 ATGATTTTTAAATTATAATAAAATATTTAAT
1 ATGATATTTAAATTATAATAAAATATTTAAT
* *
20453394 ATGATATTTAAATT-TTA-AAAATTTTTAAT
1 ATGATATTTAAATTATAATAAAATATTTAAT
*
20453423 ATAATAT
1 ATGATAT
20453430 ATGAGTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 17 0.53
30 2 0.06
31 13 0.41
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (31 bp):
ATGATATTTAAATTATAATAAAATATTTAAT
Found at i:20453441 original size:29 final size:29
Alignment explanation
Indices: 20453371--20453441 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
20453361 GAATGATTTT
* *
20453371 TAAATTATAATAAAATATTTAATATGATATT
1 TAAATTAT-A-AAAATATTTAATATAATATA
* *
20453402 TAAATTTTAAAAATTTTTAATATAATATA
1 TAAATTATAAAAATATTTAATATAATATA
* *
20453431 TGAGTTATAAA
1 TAAATTATAAA
20453442 TTTATTGATT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
29 25 0.76
30 1 0.03
31 7 0.21
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (29 bp):
TAAATTATAAAAATATTTAATATAATATA
Found at i:20455901 original size:2 final size:2
Alignment explanation
Indices: 20455894--20455933 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
20455884 TTGCCAGGGA
20455894 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20455934 TCTCTGCAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20456860 original size:9 final size:9
Alignment explanation
Indices: 20456846--20456903 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
20456836 AAACATTTCA
20456846 TTTTAATAT
1 TTTTAATAT
20456855 TTTTAATAT
1 TTTTAATAT
20456864 TTTTGGAAT-T
1 TTTT--AATAT
*
20456874 TTTATAAAAT
1 TTT-TAATAT
20456884 TTTCT-ATAT
1 TTT-TAATAT
20456893 TTTTAAT-T
1 TTTTAATAT
20456901 TTT
1 TTT
20456904 ATGTTTTTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
8 5 0.12
9 23 0.56
10 9 0.22
11 4 0.10
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (9 bp):
TTTTAATAT
Found at i:20456940 original size:19 final size:18
Alignment explanation
Indices: 20456919--20456971 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
20456909 TTTTAGAAAT
* *
20456919 TTTTTAAAAATATTTATG
1 TTTTTAAAAAAATTTATA
*
20456937 TTTTTAAAAAGATATTATAA
1 TTTTTAAAAAAAT-TTAT-A
20456957 TTTTTAAAAAAATTT
1 TTTTTAAAAAAATTT
20456972 TACATTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 12 0.40
19 6 0.20
20 12 0.40
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (18 bp):
TTTTTAAAAAAATTTATA
Found at i:20456951 original size:20 final size:19
Alignment explanation
Indices: 20456916--20456980 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
20456906 GTTTTTTAGA
*
20456916 AATTTTTTAAAAATATT-T
1 AATTTTTAAAAAATATTAT
*
20456934 ATGTTTTTAAAAAGATATTAT
1 A-ATTTTTAAAAA-ATATTAT
*
20456955 AATTTTTAAAAAA-ATTTT
1 AATTTTTAAAAAATATTAT
20456973 ACATTTTT
1 A-ATTTTT
20456981 TTTTATCTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
18 6 0.15
19 16 0.41
20 15 0.38
21 2 0.05
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (19 bp):
AATTTTTAAAAAATATTAT
Found at i:20456978 original size:19 final size:18
Alignment explanation
Indices: 20456919--20456980 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
20456909 TTTTAGAAAT
* *
20456919 TTTTTAAAAATA-TTTATG
1 TTTTTAAAAAAATTTTA-A
*
20456937 TTTTTAAAAAGATATTATAA
1 TTTTTAAAAA-A-ATTTTAA
20456957 TTTTTAAAAAAATTTTACA
1 TTTTTAAAAAAATTTTA-A
20456976 TTTTT
1 TTTTT
20456981 TTTTATCTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
18 15 0.42
19 7 0.19
20 11 0.31
21 3 0.08
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTTTAAAAAAATTTTAA
Found at i:20456981 original size:20 final size:19
Alignment explanation
Indices: 20456916--20456981 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 19
20456906 GTTTTTTAGA
*
20456916 AATTTTTTAAAAATA-TTT
1 AATTTTTTAAAAAAATTTT
*
20456934 -ATGTTTTTAAAAAGATATTAT
1 AAT-TTTTTAAAAA-A-ATTTT
20456955 AA-TTTTTAAAAAAATTTT
1 AATTTTTTAAAAAAATTTT
20456973 ACATTTTTT
1 A-ATTTTTT
20456982 TTTATCTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
17 2 0.05
18 15 0.39
19 2 0.05
20 16 0.42
21 2 0.05
22 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (19 bp):
AATTTTTTAAAAAAATTTT
Found at i:20457264 original size:22 final size:24
Alignment explanation
Indices: 20457225--20457268 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
20457215 AAAGAAAAAA
*
20457225 TTAAATATTTGATTAAATAAAATG
1 TTAAATATTTGATAAAATAAAATG
20457249 TTAAAT-TTTGA-AAAATAAAA
1 TTAAATATTTGATAAAATAAAA
20457269 AAATAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 5 0.26
24 6 0.32
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39
Consensus pattern (24 bp):
TTAAATATTTGATAAAATAAAATG
Found at i:20457362 original size:16 final size:17
Alignment explanation
Indices: 20457343--20457377 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
20457333 AAATAAAAAA
*
20457343 TTTTAAAATAT-TGATT
1 TTTTAAAAAATCTGATT
20457359 TTTTAAAAAATCTGATT
1 TTTTAAAAAATCTGATT
20457376 TT
1 TT
20457378 AAAAACCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (17 bp):
TTTTAAAAAATCTGATT
Found at i:20461432 original size:22 final size:22
Alignment explanation
Indices: 20461407--20461449 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
20461397 TACTTTAATC
20461407 TAATAAGAATTAT-ATTTATATA
1 TAATAA-AATTATAATTTATATA
*
20461429 TAATTAAATTATAATTTATAT
1 TAATAAAATTATAATTTATAT
20461450 TAAAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TAATAAAATTATAATTTATATA
Found at i:20463835 original size:87 final size:87
Alignment explanation
Indices: 20463734--20463904 Score: 315
Period size: 87 Copynumber: 2.0 Consensus size: 87
20463724 ACAAAGTTCG
*
20463734 AATAAGTCAAGAACTAAAGTCATTGTACCAAGTCTAGATAAAAACAAATATCATTTATTGTCTAC
1 AATAAGTCAAGAACTAAAGTCATTGTACCAAGTCTAAATAAAAACAAATATCATTTATTGTCTAC
*
20463799 AAATATGGTATTCAAAGTATAA
66 AAATATGCTATTCAAAGTATAA
20463821 AATAAGTCAAGAACTAAAGTCATTGTACCAAGTCTAAATAAAAACAAATATCATTTATTGTCTAC
1 AATAAGTCAAGAACTAAAGTCATTGTACCAAGTCTAAATAAAAACAAATATCATTTATTGTCTAC
*
20463886 AAATATGCTATTCGAAGTA
66 AAATATGCTATTCAAAGTA
20463905 AATAAACAAC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (87 bp):
AATAAGTCAAGAACTAAAGTCATTGTACCAAGTCTAAATAAAAACAAATATCATTTATTGTCTAC
AAATATGCTATTCAAAGTATAA
Found at i:20465457 original size:16 final size:16
Alignment explanation
Indices: 20465415--20465457 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
20465405 ACAATTTATC
*
20465415 ATTTCTTTTTTATTTT
1 ATTTATTTTTTATTTT
*
20465431 ATTTATCTTTTA-TTT
1 ATTTATTTTTTATTTT
20465446 ATTTTATTTTTT
1 A-TTTATTTTTT
20465458 TAGCAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (16 bp):
ATTTATTTTTTATTTT
Found at i:20467293 original size:200 final size:200
Alignment explanation
Indices: 20467025--20467443 Score: 567
Period size: 200 Copynumber: 2.1 Consensus size: 200
20467015 TTTTGACCAA
* *
20467025 AGGCAATGAAACTTTAAATTAAAAATTGAGAAGACTTATAAATTATGCTCTTTGGTCTTACAAAT
1 AGGCAATGAAACTTTAAATTAAAAACTGAGAAGACTTATAAATTATGCCCTTTGGTCTTACAAAT
* * *
20467090 CATGCCTAATTTTGATGAAGTCCTTTGACCAGAGGCTCTTAAAATT-AAAAGCTCTTCTAACTA-
66 CATGCCTAATTTTGATGAAGTCCTTTGACCAGAGGCTCTTAAAATTAAAAAACTCCTCTAACCAG
* * * *
20467153 ACGGCTATGAAACTTTAAATGGCTTATCTAACCA-AAGGTAACGAAACTTTAAAGAAAACT-TTT
131 A-AGCTATGAAACTTTAAATGGCTCATCTAACCAGAA-GCAACGAAACTTTAAAGAAAACTGCTT
20467216 CTAACTAG
194 -TAACTAG
* * * *
20467224 AGTCAATGAAACTTTAAATTAAAAAACTGAGAGGTCTTATAGATTATGCCCTTTGGTCTTACAAA
1 AGGCAATGAAACTTTAAATT-AAAAACTGAGAAGACTTATAAATTATGCCCTTTGGTCTTACAAA
* *
20467289 TCATGCCTAATTTTGATGGAGTCCTTTGATCAGAGGCTCTTAAAATTAAAAAACTCCTCTAACCA
65 TCATGCCTAATTTTGATGAAGTCCTTTGACCAGAGGCTCTTAAAATTAAAAAACTCCTCTAACCA
* * * * * * *
20467354 GAAGTTATGAGACTTTAAATGGCTCATTTGACCAGAAGCAATGAAACTTTGAAGAAAGCTGCTTT
130 GAAGCTATGAAACTTTAAATGGCTCATCTAACCAGAAGCAACGAAACTTTAAAGAAAACTGCTTT
*
20467419 GACTAG
195 AACTAG
20467425 AGGCAATGAAACTTTAAAT
1 AGGCAATGAAACTTTAAAT
20467444 AGCTTTTCTG
Statistics
Matches: 191, Mismatches: 24, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
199 19 0.10
200 84 0.44
201 83 0.43
202 5 0.03
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (200 bp):
AGGCAATGAAACTTTAAATTAAAAACTGAGAAGACTTATAAATTATGCCCTTTGGTCTTACAAAT
CATGCCTAATTTTGATGAAGTCCTTTGACCAGAGGCTCTTAAAATTAAAAAACTCCTCTAACCAG
AAGCTATGAAACTTTAAATGGCTCATCTAACCAGAAGCAACGAAACTTTAAAGAAAACTGCTTTA
ACTAG
Found at i:20467403 original size:34 final size:34
Alignment explanation
Indices: 20467350--20467447 Score: 99
Period size: 36 Copynumber: 2.8 Consensus size: 34
20467340 AACTCCTCTA
** * *
20467350 ACCAGAAGTTATGAGACTTTAAATGGCT-CATTTG
1 ACCAGAAGCAATGAAACTTTAAATAGCTGC-TTTG
*
20467384 ACCAGAAGCAATGAAACTTTGAAGAAAGCTGCTTTG
1 ACCAGAAGCAATGAAACTTT-AA-ATAGCTGCTTTG
* *
20467420 ACTAGAGGCAATGAAACTTTAAATAGCT
1 ACCAGAAGCAATGAAACTTTAAATAGCT
20467448 TTTCTGATGA
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
34 22 0.42
35 4 0.08
36 26 0.49
37 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (34 bp):
ACCAGAAGCAATGAAACTTTAAATAGCTGCTTTG
Found at i:20467494 original size:40 final size:40
Alignment explanation
Indices: 20467457--20467676 Score: 152
Period size: 40 Copynumber: 5.7 Consensus size: 40
20467447 TTTTCTGATG
20467457 AGAGGCAATAAAACTTTAAATTTAAAAGGCTCATCTGACC
1 AGAGGCAATAAAACTTTAAATTTAAAAGGCTCATCTGACC
* * * * *
20467497 AGAGGCTATGAAACTTTAAATTTAAAATGCTCCTCTAACC
1 AGAGGCAATAAAACTTTAAATTTAAAAGGCTCATCTGACC
* * * * * *
20467537 ATAGGTAATGAAACTCTAAA--T----GGCTCTTTTGACC
1 AGAGGCAATAAAACTTTAAATTTAAAAGGCTCATCTGACC
* * * *
20467571 AAAGGCAATGAAACTTTAAATTCAAAAGGCTTC-TTTGACC
1 AGAGGCAATAAAACTTTAAATTTAAAAGGC-TCATCTGACC
* * * *
20467611 AGAGGTAATAAAACTTT-AATTCT-AAAGGCTCTTATAACC
1 AGAGGCAATAAAACTTTAAATT-TAAAAGGCTCATCTGACC
* * * *
20467650 AAAGGTAACAAAATTTTAAATTTAAAA
1 AGAGGCAATAAAACTTTAAATTTAAAA
20467677 TCTGAAAGGG
Statistics
Matches: 143, Mismatches: 26, Indels: 22
0.75 0.14 0.12
Matches are distributed among these distances:
34 26 0.18
38 3 0.02
39 30 0.21
40 82 0.57
41 2 0.01
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (40 bp):
AGAGGCAATAAAACTTTAAATTTAAAAGGCTCATCTGACC
Found at i:20467562 original size:74 final size:74
Alignment explanation
Indices: 20467479--20467625 Score: 186
Period size: 74 Copynumber: 2.0 Consensus size: 74
20467469 ACTTTAAATT
* * * * *
20467479 TAAAAGGCTCATCTGACCAGAGGCTATGAAACTTTAAATTTAAAATGCTCCTCTAACCATAGGTA
1 TAAAAGGCTCATCTGACCAAAGGCAATGAAACTTTAAATTCAAAAGGCTCCTCTAACCAGAGGTA
*
20467544 ATGAAACTC
66 ATAAAACTC
* * * * * *
20467553 TAAATGGCTCTTTTGACCAAAGGCAATGAAACTTTAAATTCAAAAGGCTTCTTTGACCAGAGGTA
1 TAAAAGGCTCATCTGACCAAAGGCAATGAAACTTTAAATTCAAAAGGCTCCTCTAACCAGAGGTA
20467618 ATAAAACT
66 ATAAAACT
20467626 TTAATTCTAA
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
74 61 1.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (74 bp):
TAAAAGGCTCATCTGACCAAAGGCAATGAAACTTTAAATTCAAAAGGCTCCTCTAACCAGAGGTA
ATAAAACTC
Found at i:20467632 original size:39 final size:38
Alignment explanation
Indices: 20467558--20467668 Score: 123
Period size: 39 Copynumber: 2.8 Consensus size: 38
20467548 AACTCTAAAT
* *
20467558 GGCTCTTTTGACCAAAGGCAATGAAACTTTAAATTCAAAA
1 GGCTC-TTTGACCAAAGGTAATAAAACTTT-AATTCAAAA
* *
20467598 GGCTTCTTTGACCAGAGGTAATAAAACTTTAATTCTAAA
1 GGC-TCTTTGACCAAAGGTAATAAAACTTTAATTCAAAA
* * *
20467637 GGCTCTTATAACCAAAGGTAACAAAATTTTAA
1 GGCTCTT-TGACCAAAGGTAATAAAACTTTAA
20467669 ATTTAAAATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
38 4 0.07
39 31 0.51
40 24 0.39
41 2 0.03
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (38 bp):
GGCTCTTTGACCAAAGGTAATAAAACTTTAATTCAAAA
Found at i:20473969 original size:69 final size:69
Alignment explanation
Indices: 20473856--20473994 Score: 174
Period size: 69 Copynumber: 2.0 Consensus size: 69
20473846 GGTATAGTCG
** * *
20473856 TACAAATTGGTTCATCAATTTTAACACTCAATTTCTCATTATAAAAGATGGTAATAGGGTCAAAA
1 TACAAATTGGTTCATCAAACTTAACACTCAATTTCTCATTATAAAAGATGGTAACAGGCTCAAAA
20473921 TTCA
66 TTCA
*** *
20473925 TACAAATTGGCTT-ATCAAACTTAACACTTGGTTTCTC-TTCATAAAAGATGGTAACAGGCTTAA
1 TACAAATTGG-TTCATCAAACTTAACACTCAATTTCTCATT-ATAAAAGATGGTAACAGGCTCAA
20473988 AATTCA
64 AATTCA
20473994 T
1 T
20473995 TCGATAAAAC
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
68 2 0.03
69 56 0.93
70 2 0.03
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (69 bp):
TACAAATTGGTTCATCAAACTTAACACTCAATTTCTCATTATAAAAGATGGTAACAGGCTCAAAA
TTCA
Found at i:20479260 original size:21 final size:23
Alignment explanation
Indices: 20479236--20479281 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
20479226 AATTAATTAA
*
20479236 TTAATT-TTTA-TAGTGATTGTT
1 TTAATTATTTACTAGTGAGTGTT
*
20479257 TTAATTATTTACTAGTTAGTGTT
1 TTAATTATTTACTAGTGAGTGTT
20479280 TT
1 TT
20479282 TATCTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 4 0.19
23 11 0.52
ACGTcount: A:0.24, C:0.02, G:0.13, T:0.61
Consensus pattern (23 bp):
TTAATTATTTACTAGTGAGTGTT
Found at i:20479965 original size:15 final size:14
Alignment explanation
Indices: 20479923--20479965 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
20479913 TCTTAAACAA
*
20479923 ATAACAAAAATAAT
1 ATAATAAAAATAAT
*
20479937 ATAATATAATATAAT
1 ATAATA-AAAATAAT
20479952 ATAAATAAAAATAA
1 AT-AATAAAAATAA
20479966 AATGAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 5 0.21
15 15 0.62
16 4 0.17
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (14 bp):
ATAATAAAAATAAT
Found at i:20480952 original size:12 final size:13
Alignment explanation
Indices: 20480937--20480977 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 13
20480927 ATTAATTAAT
20480937 TAAT-TAATAAAA
1 TAATATAATAAAA
20480949 TAATAATAATAATAA
1 TAAT-ATAATAA-AA
20480964 TAATATAATAAAA
1 TAATATAATAAAA
20480977 T
1 T
20480978 TATTTAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 4 0.15
13 3 0.12
14 13 0.50
15 6 0.23
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
TAATATAATAAAA
Found at i:20480955 original size:3 final size:3
Alignment explanation
Indices: 20480941--20480974 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
20480931 ATTAATTAAT
20480941 TAA TAA -AA TAA TAA TAA TAA TAA TAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
20480975 AATTATTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 25 0.86
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:20487681 original size:26 final size:26
Alignment explanation
Indices: 20487632--20487714 Score: 80
Period size: 26 Copynumber: 3.2 Consensus size: 26
20487622 TTATTTAGAG
* *
20487632 TTTTAGGTTTTC-CTTAGGGTTTTGA
1 TTTTAGGATTTCATTTAGGGTTTTGA
20487657 TTTTAGGATTTCATTTAGGGTTTTGA
1 TTTTAGGATTTCATTTAGGGTTTTGA
* * * *
20487683 CTTT-GGAGTTTCAATCTAAGGTTTTAA
1 TTTTAGGA-TTTC-ATTTAGGGTTTTGA
20487710 TTTTA
1 TTTTA
20487715 AGTTTTTTGC
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
25 14 0.30
26 19 0.40
27 14 0.30
ACGTcount: A:0.19, C:0.07, G:0.20, T:0.53
Consensus pattern (26 bp):
TTTTAGGATTTCATTTAGGGTTTTGA
Found at i:20487743 original size:13 final size:13
Alignment explanation
Indices: 20487725--20487812 Score: 63
Period size: 13 Copynumber: 6.8 Consensus size: 13
20487715 AGTTTTTTGC
20487725 TTAGGGTTTCGAT
1 TTAGGGTTTCGAT
**
20487738 TTAGGGTTTTAATT
1 TTAGGGTTTCGA-T
*
20487752 TTAGGATTTCGAT
1 TTAGGGTTTCGAT
* *
20487765 TTAGAGTTTTGATT
1 TTAGGGTTTCGA-T
**
20487779 TTA-GGTTTTAAT
1 TTAGGGTTTCGAT
* *
20487791 TTAAGGTTTC-AA
1 TTAGGGTTTCGAT
20487803 TTAGGGTTTC
1 TTAGGGTTTC
20487813 AACTTAAGGT
Statistics
Matches: 59, Mismatches: 13, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
12 14 0.24
13 31 0.53
14 14 0.24
ACGTcount: A:0.22, C:0.05, G:0.23, T:0.51
Consensus pattern (13 bp):
TTAGGGTTTCGAT
Found at i:20487746 original size:27 final size:26
Alignment explanation
Indices: 20487725--20487783 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
20487715 AGTTTTTTGC
* *
20487725 TTAGGGTTTCGATTTAGGGTTTTAATT
1 TTAGGATTTCGATTTAGAGTTTT-ATT
20487752 TTAGGATTTCGATTTAGAGTTTTGATT
1 TTAGGATTTCGATTTAGAGTTTT-ATT
20487779 TTAGG
1 TTAGG
20487784 TTTTAATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.20, C:0.03, G:0.25, T:0.51
Consensus pattern (26 bp):
TTAGGATTTCGATTTAGAGTTTTATT
Found at i:20487779 original size:40 final size:39
Alignment explanation
Indices: 20487645--20487826 Score: 109
Period size: 40 Copynumber: 4.6 Consensus size: 39
20487635 TAGGTTTTCC
* * * * * *
20487645 TTAGGGTTTTGATTTTAGGATTTCATTTAGGGTTTTGACT
1 TTAGAGTTTCGATTTTAGGTTTTAATTTAAGGTTTCGA-T
* * * * * * *
20487685 TTGGAGTTTCAATCTAAGGTTTTAATTTTAAGTTTTTTG-C
1 TTAGAGTTTCGATTTTAGGTTTTAA-TTTAAG-GTTTCGAT
* *
20487725 TTAGGGTTTCGA-TTTAGGGTTTTAATTTTAGGATTTCGAT
1 TTAGAGTTTCGATTTTA-GGTTTTAATTTAAGG-TTTCGAT
* *
20487765 TTAGAGTTTTGATTTTAGGTTTTAATTTAAGGTTTC-AA
1 TTAGAGTTTCGATTTTAGGTTTTAATTTAAGGTTTCGAT
* * * *
20487803 TTAGGGTTTCAACTTAAGGTTTTA
1 TTAGAGTTTCGATTTTAGGTTTTA
20487827 TAAATTTATG
Statistics
Matches: 107, Mismatches: 29, Indels: 14
0.71 0.19 0.09
Matches are distributed among these distances:
38 20 0.19
39 15 0.14
40 58 0.54
41 9 0.08
42 5 0.05
ACGTcount: A:0.22, C:0.05, G:0.21, T:0.51
Consensus pattern (39 bp):
TTAGAGTTTCGATTTTAGGTTTTAATTTAAGGTTTCGAT
Found at i:20487810 original size:12 final size:13
Alignment explanation
Indices: 20487781--20487824 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
20487771 TTTTGATTTT
* *
20487781 AGGTTTTAATTTA
1 AGGTTTCAACTTA
20487794 AGGTTTCAA-TTA
1 AGGTTTCAACTTA
*
20487806 GGGTTTCAACTTA
1 AGGTTTCAACTTA
20487819 AGGTTT
1 AGGTTT
20487825 TATAAATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 11 0.41
13 16 0.59
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.45
Consensus pattern (13 bp):
AGGTTTCAACTTA
Found at i:20487973 original size:14 final size:14
Alignment explanation
Indices: 20487954--20487980 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
20487944 TTATAATTAT
20487954 TTTTATTTATTTAC
1 TTTTATTTATTTAC
20487968 TTTTATTTATTTA
1 TTTTATTTATTTA
20487981 AAAAATGGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTATTTATTTAC
Found at i:20488038 original size:3 final size:3
Alignment explanation
Indices: 20488032--20488071 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
20488022 AAACATTTTT
20488032 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
20488072 CTTTTATAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:20488216 original size:4 final size:4
Alignment explanation
Indices: 20488207--20488246 Score: 59
Period size: 4 Copynumber: 10.8 Consensus size: 4
20488197 AACGTAATCT
20488207 TTTA TTTA TTTA TTTA -TTA -TTA -TTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
20488247 CTTTTGGTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 9 0.26
4 26 0.74
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:20489864 original size:15 final size:16
Alignment explanation
Indices: 20489839--20489919 Score: 62
Period size: 17 Copynumber: 4.9 Consensus size: 16
20489829 CAAATTGTAC
20489839 TGTTATTATTTTTATA
1 TGTTATTATTTTTATA
20489855 TGTT-TTATTTTTATTA
1 TGTTATTATTTTTA-TA
*
20489871 T-TTATTTATTATTTTTAA
1 TGTTA-TTATT-TTTAT-A
20489889 TGTTA-TATTTCTTA-A
1 TGTTATTATTT-TTATA
*
20489904 TTTTATTTATTTTTAT
1 TGTTA-TTATTTTTAT
20489920 TTGGGCTTTC
Statistics
Matches: 52, Mismatches: 3, Indels: 19
0.70 0.04 0.26
Matches are distributed among these distances:
15 16 0.31
16 11 0.21
17 17 0.33
18 5 0.10
19 3 0.06
ACGTcount: A:0.23, C:0.01, G:0.04, T:0.72
Consensus pattern (16 bp):
TGTTATTATTTTTATA
Found at i:20489866 original size:6 final size:6
Alignment explanation
Indices: 20489857--20489921 Score: 53
Period size: 6 Copynumber: 10.3 Consensus size: 6
20489847 TTTTTATATG
* *
20489857 TTTTAT TTTTAT TATTTAT TTATTAT TTTTAAT GTTATAT TTCTTAA TTTTA-
1 TTTTAT TTTTAT T-TTTAT TT-TTAT TTTT-AT -TTTTAT TT-TTAT TTTTAT
20489909 -TTTAT TTTTAT TT
1 TTTTAT TTTTAT TT
20489922 GGGCTTTCAT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
4 4 0.08
6 22 0.45
7 20 0.41
8 3 0.06
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTTAT
Found at i:20489898 original size:34 final size:35
Alignment explanation
Indices: 20489841--20489914 Score: 107
Period size: 34 Copynumber: 2.1 Consensus size: 35
20489831 AATTGTACTG
* *
20489841 TTATTATTTTTATATGTTTTATTT-TTATTATTTAT
1 TTATTATTTTTATATGTTATATTTCTTAAT-TTTAT
20489876 TTATTATTTTTA-ATGTTATATTTCTTAATTTTAT
1 TTATTATTTTTATATGTTATATTTCTTAATTTTAT
20489910 TTATT
1 TTATT
20489915 TTTATTTGGG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
34 20 0.56
35 16 0.44
ACGTcount: A:0.24, C:0.01, G:0.03, T:0.72
Consensus pattern (35 bp):
TTATTATTTTTATATGTTATATTTCTTAATTTTAT
Found at i:20491316 original size:26 final size:26
Alignment explanation
Indices: 20491285--20491336 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
20491275 ATTTACCGGA
20491285 GCAATATTTCAAATGATGAAAGAGAG
1 GCAATATTTCAAATGATGAAAGAGAG
20491311 GCAATATTTCAAATGATGAAAGAGAG
1 GCAATATTTCAAATGATGAAAGAGAG
20491337 ACAGCATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.08, G:0.23, T:0.23
Consensus pattern (26 bp):
GCAATATTTCAAATGATGAAAGAGAG
Found at i:20491463 original size:23 final size:23
Alignment explanation
Indices: 20491437--20491482 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
20491427 CTAAATGAGT
20491437 TGGTTGGATGTTAATTTCTATGA
1 TGGTTGGATGTTAATTTCTATGA
20491460 TGGTTGGATGTTAATTTCTATGA
1 TGGTTGGATGTTAATTTCTATGA
20491483 ATTTGCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.04, G:0.26, T:0.48
Consensus pattern (23 bp):
TGGTTGGATGTTAATTTCTATGA
Found at i:20492986 original size:4 final size:4
Alignment explanation
Indices: 20492977--20493009 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
20492967 TTTAAGTTTG
*
20492977 TAAA TAAA TAAA TAAA TAAA TAAA TAAA CAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
20493010 GGGTTTAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:20493328 original size:16 final size:16
Alignment explanation
Indices: 20493301--20493357 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
20493291 CGATGGTTAG
*
20493301 AAAAATAAAAAGATGA
1 AAAAATAGAAAGATGA
* *
20493317 AAAAATTGAAAGATTA
1 AAAAATAGAAAGATGA
*
20493333 GAAAAGTAGAAAGATG-
1 -AAAAATAGAAAGATGA
*
20493349 GAAAATAGA
1 AAAAATAGA
20493358 GTTTTTCTTT
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
15 7 0.22
16 13 0.41
17 12 0.38
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.16
Consensus pattern (16 bp):
AAAAATAGAAAGATGA
Found at i:20493337 original size:17 final size:17
Alignment explanation
Indices: 20493297--20493347 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
20493287 GCTACGATGG
*
20493297 TTAGAAAAATAAAAAGA
1 TTAGAAAAATAGAAAGA
* *
20493314 TGA-AAAAATTGAAAGA
1 TTAGAAAAATAGAAAGA
*
20493330 TTAGAAAAGTAGAAAGA
1 TTAGAAAAATAGAAAGA
20493347 T
1 T
20493348 GGAAAATAGA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.63, C:0.00, G:0.18, T:0.20
Consensus pattern (17 bp):
TTAGAAAAATAGAAAGA
Found at i:20496107 original size:21 final size:21
Alignment explanation
Indices: 20496083--20496199 Score: 117
Period size: 21 Copynumber: 5.5 Consensus size: 21
20496073 GGACGGTGAG
* * *
20496083 TCATAACTATGATATAATGAC
1 TCATTACTATGGTACAATGAC
*
20496104 TCATTATTATGGTACAATGAC
1 TCATTACTATGGTACAATGAC
* *
20496125 TCATTATTATGGTACAGTGAC
1 TCATTACTATGGTACAATGAC
*
20496146 TCATTATTATGGTACAATGAC
1 TCATTACTATGGTACAATGAC
* ***
20496167 TCATCACTTATGGTATGGTGAC
1 TCATTAC-TATGGTACAATGAC
*
20496189 TCATCACTATG
1 TCATTACTATG
20496200 ACTCATACTA
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
21 66 0.79
22 18 0.21
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (21 bp):
TCATTACTATGGTACAATGAC
Found at i:20496159 original size:42 final size:43
Alignment explanation
Indices: 20496100--20496192 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 43
20496090 TATGATATAA
*
20496100 TGACTCATTATTATGGTACAATGACTCATTA-TTATGGTACAG
1 TGACTCATTATTATGGTACAATGACTCATCACTTATGGTACAG
**
20496142 TGACTCATTATTATGGTACAATGACTCATCACTTATGGTATGG
1 TGACTCATTATTATGGTACAATGACTCATCACTTATGGTACAG
20496185 TGACTCAT
1 TGACTCAT
20496193 CACTATGACT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 30 0.64
43 17 0.36
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (43 bp):
TGACTCATTATTATGGTACAATGACTCATCACTTATGGTACAG
Found at i:20496180 original size:22 final size:21
Alignment explanation
Indices: 20496098--20496181 Score: 141
Period size: 21 Copynumber: 4.0 Consensus size: 21
20496088 ACTATGATAT
20496098 AATGACTCATTATTATGGTAC
1 AATGACTCATTATTATGGTAC
20496119 AATGACTCATTATTATGGTAC
1 AATGACTCATTATTATGGTAC
*
20496140 AGTGACTCATTATTATGGTAC
1 AATGACTCATTATTATGGTAC
*
20496161 AATGACTCATCACTTATGGTA
1 AATGACTCATTA-TTATGGTA
20496182 TGGTGACTCA
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
21 51 0.86
22 8 0.14
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (21 bp):
AATGACTCATTATTATGGTAC
Found at i:20496188 original size:22 final size:21
Alignment explanation
Indices: 20496100--20496199 Score: 119
Period size: 21 Copynumber: 4.7 Consensus size: 21
20496090 TATGATATAA
* *
20496100 TGACTCATTATTATGGTACAA
1 TGACTCATCATTATGGTACAG
*
20496121 TGACTCATTATTATGGTACAG
1 TGACTCATCATTATGGTACAG
* *
20496142 TGACTCATTATTATGGTACAA
1 TGACTCATCATTATGGTACAG
**
20496163 TGACTCATCACTTATGGTATGG
1 TGACTCATCA-TTATGGTACAG
*
20496185 TGACTCATCACTATG
1 TGACTCATCATTATG
20496200 ACTCATACTA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
21 53 0.75
22 18 0.25
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (21 bp):
TGACTCATCATTATGGTACAG
Found at i:20504094 original size:2 final size:2
Alignment explanation
Indices: 20504087--20504118 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
20504077 ACATCCCCAC
20504087 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20504119 CACAATTCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20511408 original size:12 final size:12
Alignment explanation
Indices: 20511392--20511421 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
20511382 GCTGGAGAGA
20511392 ATGATGCTGATG
1 ATGATGCTGATG
*
20511404 CTGATGCTGATG
1 ATGATGCTGATG
20511416 ATGATG
1 ATGATG
20511422 ACGAAGGTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.23, C:0.10, G:0.33, T:0.33
Consensus pattern (12 bp):
ATGATGCTGATG
Found at i:20526434 original size:15 final size:15
Alignment explanation
Indices: 20526397--20526437 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
20526387 GTATTTAAGG
* *
20526397 TTTAGGGCTTTGGAT
1 TTTAGGGTTTTGAAT
20526412 TTTAGGGTTTTGAAT
1 TTTAGGGTTTTGAAT
20526427 TTTAGGGTTTT
1 TTTAGGGTTTT
20526438 AAAAATGTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.15, C:0.02, G:0.29, T:0.54
Consensus pattern (15 bp):
TTTAGGGTTTTGAAT
Found at i:20527318 original size:25 final size:25
Alignment explanation
Indices: 20527281--20527338 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
20527271 TTCTAAAACA
* * *
20527281 TTTCAAAG-TTTTTTTTTTTTCACT
1 TTTCAAAGCCTTTTTTGTGTTCACT
* *
20527305 TTTTAAAGCCTTTTTTGTGTTGACT
1 TTTCAAAGCCTTTTTTGTGTTCACT
20527330 TTTCAAAGC
1 TTTCAAAGC
20527339 TACCCCTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 7 0.26
25 20 0.74
ACGTcount: A:0.19, C:0.14, G:0.10, T:0.57
Consensus pattern (25 bp):
TTTCAAAGCCTTTTTTGTGTTCACT
Found at i:20527417 original size:15 final size:15
Alignment explanation
Indices: 20527397--20527430 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
20527387 CTGTTTTGAC
20527397 TTTTCAAAG-TTTTTT
1 TTTTC-AAGCTTTTTT
20527412 TTTTCAAGCTTTTTT
1 TTTTCAAGCTTTTTT
20527427 TTTT
1 TTTT
20527431 ACTTTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.15, C:0.09, G:0.06, T:0.71
Consensus pattern (15 bp):
TTTTCAAGCTTTTTT
Found at i:20527435 original size:36 final size:35
Alignment explanation
Indices: 20527344--20527462 Score: 139
Period size: 36 Copynumber: 3.2 Consensus size: 35
20527334 AAAGCTACCC
*
20527344 CTTTTTTTTTAAGTTTTAAAGGTTTTTTTTTTCAAAG
1 CTTTTTTTTTAACTTTTAAA-GTTTTTTTTTTC-AAG
*
20527381 CCTTTTCTGTTTTGACTTTTCAAAGTTTTTTTTTTCAAG
1 -CTTTT-T-TTTTAACTTTT-AAAGTTTTTTTTTTCAAG
*
20527420 CTTTTTTTTTTACTTTTTAAAGTTTTTTTTTTCAAG
1 CTTTTTTTTTAAC-TTTTAAAGTTTTTTTTTTCAAG
*
20527456 CTGTTTT
1 CTTTTTT
20527463 CCCCTTTTTT
Statistics
Matches: 73, Mismatches: 4, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
36 30 0.41
37 5 0.07
38 10 0.14
39 4 0.05
40 21 0.29
41 3 0.04
ACGTcount: A:0.17, C:0.10, G:0.09, T:0.64
Consensus pattern (35 bp):
CTTTTTTTTTAACTTTTAAAGTTTTTTTTTTCAAG
Found at i:20527436 original size:22 final size:21
Alignment explanation
Indices: 20527411--20527451 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
20527401 CAAAGTTTTT
*
20527411 TTTTTCAAGCTTTTTTTTTTAC
1 TTTTTAAAG-TTTTTTTTTTAC
20527433 TTTTTAAAGTTTTTTTTTT
1 TTTTTAAAGTTTTTTTTTT
20527452 CAAGCTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.15, C:0.07, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTTTAAAGTTTTTTTTTTAC
Found at i:20527473 original size:36 final size:35
Alignment explanation
Indices: 20527397--20527474 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 35
20527387 CTGTTTTGAC
* ***
20527397 TTTTCAAAGTTTTTTTTTTCAAGCTTTTTTTTTTA
1 TTTTTAAAGTTTTTTTTTTCAAGCTTTTTCCCTTA
*
20527432 CTTTTTAAAGTTTTTTTTTTCAAGCTGTTTTCCCCTTT
1 -TTTTTAAAGTTTTTTTTTTCAAGCT-TTTT-CCCTTA
20527470 TTTTT
1 TTTTT
20527475 TTTTTTGGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 24 0.69
37 9 0.26
38 2 0.06
ACGTcount: A:0.14, C:0.13, G:0.06, T:0.67
Consensus pattern (35 bp):
TTTTTAAAGTTTTTTTTTTCAAGCTTTTTCCCTTA
Found at i:20527551 original size:19 final size:20
Alignment explanation
Indices: 20527526--20527581 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
20527516 TTTTAAAGAT
*
20527526 TTTCTTTTTTCTTCTTTTTC
1 TTTCTTTTTTCTTCTCTTTC
*
20527546 -TTCTTTTATT-TTCACTTTC
1 TTTCTTTT-TTCTTCTCTTTC
20527565 TTTCTTTTTTCTTCTCT
1 TTTCTTTTTTCTTCTCT
20527582 ATTTCTCTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTCTTTTTTCTTCTCTTTC
Found at i:20527654 original size:20 final size:20
Alignment explanation
Indices: 20527631--20527705 Score: 75
Period size: 21 Copynumber: 3.8 Consensus size: 20
20527621 TTTTGTCAAC
*
20527631 TTTTTCTTCTTTTTTTTTCTT
1 TTTTTCTTCTTTTTTCTTC-T
20527652 TTTTTCTTCTTATTCTTCTT-T
1 TTTTTCTTCTT-TT-TTCTTCT
*
20527673 TTTTT-TTC-ATTTTCTTCT
1 TTTTTCTTCTTTTTTCTTCT
*
20527691 TTTTTCTTATTTTTT
1 TTTTTCTTCTTTTTT
20527706 AGTTCGGTAC
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
17 5 0.11
18 8 0.18
19 2 0.04
20 7 0.16
21 17 0.38
22 2 0.04
23 4 0.09
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (20 bp):
TTTTTCTTCTTTTTTCTTCT
Found at i:20527668 original size:30 final size:28
Alignment explanation
Indices: 20527632--20527705 Score: 96
Period size: 30 Copynumber: 2.6 Consensus size: 28
20527622 TTTGTCAACT
**
20527632 TTTTCTTCTTTTTTTTTCTTTTTTTCTTC
1 TTTTCTTCTTTTTTTTT-TCATTTTCTTC
20527661 TTATTCTTCTTTTTTTTTTCATTTTCTTC
1 TT-TTCTTCTTTTTTTTTTCATTTTCTTC
*
20527690 TTTT-TTCTTATTTTTT
1 TTTTCTTCTTTTTTTTT
20527706 AGTTCGGTAC
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
27 11 0.27
28 2 0.05
29 13 0.32
30 15 0.37
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (28 bp):
TTTTCTTCTTTTTTTTTTCATTTTCTTC
Found at i:20528595 original size:23 final size:20
Alignment explanation
Indices: 20528551--20528588 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
20528541 TGTGGTTGAC
20528551 AATTTAGAGAGAAGAAAAGA
1 AATTTAGAGAGAAGAAAAGA
*
20528571 AATTTAGGGAGAAGAAAA
1 AATTTAGAGAGAAGAAAA
20528589 AGTGAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16
Consensus pattern (20 bp):
AATTTAGAGAGAAGAAAAGA
Found at i:20529257 original size:70 final size:69
Alignment explanation
Indices: 20529183--20529335 Score: 166
Period size: 69 Copynumber: 2.2 Consensus size: 69
20529173 GTGAGTCAGG
* * * ** ** *
20529183 AAATAAAGATGATTGGGCCTGAATTGTAAGTC-AAAAAGTAAAGATGATC-AGGACTGAGTCGCA
1 AAATAAAAATGATTGGGACTAAACCGTAAGTCAAAAAAG-AAA-ATGATCGA-GACTGAACCACA
20529246 AGTCAAA
63 AGTCAAA
* * *
20529253 AAATAAACATGATTGGGATTAAACCGTAAGTCAAAAAAGAAAATGATCGAGACTGAACCATAAGT
1 AAATAAAAATGATTGGGACTAAACCGTAAGTCAAAAAAGAAAATGATCGAGACTGAACCACAAGT
20529318 CAAA
66 CAAA
20529322 AAATAAAAATGATT
1 AAATAAAAATGATT
20529336 ATGATCGGGA
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
69 34 0.49
70 30 0.43
71 6 0.09
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.21
Consensus pattern (69 bp):
AAATAAAAATGATTGGGACTAAACCGTAAGTCAAAAAAGAAAATGATCGAGACTGAACCACAAGT
CAAA
Found at i:20529284 original size:35 final size:34
Alignment explanation
Indices: 20529245--20529335 Score: 110
Period size: 34 Copynumber: 2.6 Consensus size: 34
20529235 ACTGAGTCGC
* * *
20529245 AAGTCAAAAAATAAACATGATTGGGATTAAACCGT
1 AAGTCAAAAAATAAA-ATGATTGAGACTAAACCAT
* * *
20529280 AAGTCAAAAAAGAAAATGATCGAGACTGAACCAT
1 AAGTCAAAAAATAAAATGATTGAGACTAAACCAT
20529314 AAGTCAAAAAATAAAAATGATT
1 AAGTCAAAAAAT-AAAATGATT
20529336 ATGATCGGGA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
34 25 0.53
35 22 0.47
ACGTcount: A:0.54, C:0.11, G:0.15, T:0.20
Consensus pattern (34 bp):
AAGTCAAAAAATAAAATGATTGAGACTAAACCAT
Found at i:20529395 original size:76 final size:74
Alignment explanation
Indices: 20529314--20529552 Score: 204
Period size: 70 Copynumber: 3.2 Consensus size: 74
20529304 ACTGAACCAT
* *
20529314 AAGTCAAAAAATAAAAATGATTATGATCGGGATTGAACTACCAGTCGAAGAATAAAGATGACTAA
1 AAGTCAAAAAATAAAAATGATTATGATC-GGATTAAACTACAAGTCGAAGAATAAAGATGACTAA
*
20529379 GACTGTATTGC
65 GACTG-ATCGC
* * * * * **
20529390 AAGTCAAGAAATGAAAATGA-T-T-A--GGATTAAACTACAAGTTGAAGAATAAATAT-AATCGG
1 AAGTCAAAAAATAAAAATGATTATGATCGGATTAAACTACAAGTCGAAGAATAAAGATGACT-AA
* * *
20529449 GATTGAACCAC
65 GACTG-ATCGC
* * ** *
20529460 AAGTAAAAAAATTAAAATGATTATGATCAGGATTAAACCGCAAGTCGAAGAATAAAG-TGACCAA
1 AAGTCAAAAAATAAAAATGATTATGATC-GGATTAAACTACAAGTCGAAGAATAAAGATGACTAA
20529524 GACTGAGTCGC
65 GACTGA-TCGC
*
20529535 AAGTCAAGAAATAAAAAT
1 AAGTCAAAAAATAAAAAT
20529553 TACCAAAATT
Statistics
Matches: 123, Mismatches: 31, Indels: 19
0.71 0.18 0.11
Matches are distributed among these distances:
69 2 0.02
70 49 0.40
71 1 0.01
72 1 0.01
73 2 0.02
74 2 0.02
75 23 0.19
76 43 0.35
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.22
Consensus pattern (74 bp):
AAGTCAAAAAATAAAAATGATTATGATCGGATTAAACTACAAGTCGAAGAATAAAGATGACTAAG
ACTGATCGC
Found at i:20529417 original size:145 final size:144
Alignment explanation
Indices: 20529234--20529550 Score: 386
Period size: 145 Copynumber: 2.2 Consensus size: 144
20529224 AGATGATCAG
* * ** *
20529234 GACTGAGTCGCAAGTCAAAAAATAAACATGATTGGGATTAAACCGTAAGTCAAAAAAGAAA-ATG
1 GACTGAGTCGCAAGTCAAGAAATAAA-ATGATTAGGATTAAACCACAAGTCAAAAAAGAAATATA
* * * * * *
20529298 ATCGAGACTGAACCATAAGTCAAAAAATAAAAATGATTATGATCGGGATTGAACTACCAGTCGAA
65 ATCGAGACTGAACCACAAGTAAAAAAATAAAAATGATTATGATCAGGATTAAACCACAAGTCGAA
*
20529363 GAATAAAGATGACTAA
130 GAATAAAG-TGACCAA
* * ** * *
20529379 GACTGTA-TTGCAAGTCAAGAAATGAAAATGATTAGGATTAAACTACAAGTTGAAGAATAAATAT
1 GACTG-AGTCGCAAGTCAAGAAAT-AAAATGATTAGGATTAAACCACAAGTCAAAAAAGAAATAT
* * * *
20529443 AATCGGGATTGAACCACAAGTAAAAAAATTAAAATGATTATGATCAGGATTAAACCGCAAGTCGA
64 AATCGAGACTGAACCACAAGTAAAAAAATAAAAATGATTATGATCAGGATTAAACCACAAGTCGA
20529508 AGAATAAAGTGACCAA
129 AGAATAAAGTGACCAA
20529524 GACTGAGTCGCAAGTCAAGAAATAAAA
1 GACTGAGTCGCAAGTCAAGAAATAAAA
20529551 ATTACCAAAA
Statistics
Matches: 145, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
144 5 0.03
145 71 0.49
146 69 0.48
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (144 bp):
GACTGAGTCGCAAGTCAAGAAATAAAATGATTAGGATTAAACCACAAGTCAAAAAAGAAATATAA
TCGAGACTGAACCACAAGTAAAAAAATAAAAATGATTATGATCAGGATTAAACCACAAGTCGAAG
AATAAAGTGACCAA
Found at i:20529596 original size:145 final size:146
Alignment explanation
Indices: 20529280--20529624 Score: 381
Period size: 145 Copynumber: 2.4 Consensus size: 146
20529270 ATTAAACCGT
* * * * * *
20529280 AAGTCAAAAAAGAAA-ATGATCGAGACTGAACCATAAGTCAAAAAATAAAAATGATTATGATCGG
1 AAGTCAAAAAATAAATATGATCGGGATTGAACCACAAGTAAAAAAATAAAAATGATTATGATCAG
* * * * * *
20529344 GATTGAACTACCAGTCGAAGAATAAAGATGACTAAGACTGTATTGCAAGTCAAGAAATGAAAATG
66 GATTAAACCACAAGTCGAAGAATAAAGATGACCAAGACTGTATCGCAAGTCAAGAAATAAAAATG
** **
20529409 ATTAGGATTAAACTAC
131 ACCAAAATTAAACTAC
** * * *
20529425 AAGTTGAAGAATAAATATAATCGGGATTGAACCACAAGTAAAAAAATTAAAATGATTATGATCAG
1 AAGTCAAAAAATAAATATGATCGGGATTGAACCACAAGTAAAAAAATAAAAATGATTATGATCAG
*
20529490 GATTAAACCGCAAGTCGAAGAATAAAG-TGACCAAGACTG-AGTCGCAAGTCAAGAAATAAAAAT
66 GATTAAACCACAAGTCGAAGAATAAAGATGACCAAGACTGTA-TCGCAAGTCAAGAAATAAAAAT
* * *
20529553 TACCAAAATTGAACTGC
130 GACCAAAATTAAACTAC
* ** * * *
20529570 AAGTCAAAAAATAAATATGATTGGGATTGAGTCACAAGTTAGAAAATACAAATGA
1 AAGTCAAAAAATAAATATGATCGGGATTGAACCACAAGTAAAAAAATAAAAATGA
20529625 CCAGGATTGA
Statistics
Matches: 162, Mismatches: 36, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
144 1 0.01
145 96 0.59
146 65 0.40
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (146 bp):
AAGTCAAAAAATAAATATGATCGGGATTGAACCACAAGTAAAAAAATAAAAATGATTATGATCAG
GATTAAACCACAAGTCGAAGAATAAAGATGACCAAGACTGTATCGCAAGTCAAGAAATAAAAATG
ACCAAAATTAAACTAC
Found at i:20529883 original size:35 final size:35
Alignment explanation
Indices: 20529832--20530176 Score: 105
Period size: 35 Copynumber: 9.8 Consensus size: 35
20529822 AGAACAACCA
* *
20529832 GGACTGAATCACAAGTCAAGAAATAAAAATGATTG
1 GGACTGAACCATAAGTCAAGAAATAAAAATGATTG
* * * * *
20529867 GGATTGAACCATAAGTCGAAG-AGTAAAGATGACTA
1 GGACTGAACCATAAGTC-AAGAAATAAAAATGATTG
* * *
20529902 GGACTAAACTGCA-AA-TCGAA-AGATAAAATTGATTG
1 GGACTGAAC--CATAAGTC-AAGAAATAAAAATGATTG
* * * **
20529937 GGACTGAGCCATATGTCAACAAATAAAAACAATTG
1 GGACTGAACCATAAGTCAAGAAATAAAAATGATTG
* * ** ** *
20529972 AGATTGAACCGCAAGTCAA-AAAGTAAAGGTGATCG
1 GGACTGAACCATAAGTCAAGAAA-TAAAAATGATTG
* * * * * *
20530007 GGATTGAACCGTAAGTTGAA-AAATTAATAACGACTG
1 GGACTGAACCATAAG-TCAAGAAA-TAAAAATGATTG
* * * * * *
20530043 GAATTGAACCACAAGT-AA-AAA-AACATTGATAACTA
1 GGACTGAACCATAAGTCAAGAAATAAAAATGAT---TG
* * * * **
20530078 GGACTGAATCATAAGTCGAGAGATAAAATTGATCA
1 GGACTGAACCATAAGTCAAGAAATAAAAATGATTG
* ** * * *
20530113 GGACTAAACTGTAAGTCAAGAAATAAGAATGACTA
1 GGACTGAACCATAAGTCAAGAAATAAAAATGATTG
* *
20530148 GGACTAAACCGTAAGTCAAGAAATAAAAA
1 GGACTGAACCATAAGTCAAGAAATAAAAA
20530177 CAATTGGGTG
Statistics
Matches: 224, Mismatches: 71, Indels: 30
0.69 0.22 0.09
Matches are distributed among these distances:
32 5 0.02
33 2 0.01
34 11 0.05
35 164 0.73
36 30 0.13
37 4 0.02
38 8 0.04
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (35 bp):
GGACTGAACCATAAGTCAAGAAATAAAAATGATTG
Found at i:20530511 original size:22 final size:22
Alignment explanation
Indices: 20530464--20530513 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
20530454 CTAAAACATC
* *
20530464 TTTT-TTTTCTCTTTTTTTCTT
1 TTTTGTTTTATCTTTTTATCTT
* *
20530485 CTTTGTTTTATCTTTTTATGTT
1 TTTTGTTTTATCTTTTTATCTT
20530507 TTTTGTT
1 TTTTGTT
20530514 AGTTTTTTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.04, C:0.10, G:0.06, T:0.80
Consensus pattern (22 bp):
TTTTGTTTTATCTTTTTATCTT
Found at i:20530772 original size:81 final size:81
Alignment explanation
Indices: 20530672--20530839 Score: 219
Period size: 81 Copynumber: 2.1 Consensus size: 81
20530662 CGATTTTATA
* * ** ** *
20530672 AATCTTGACATCTATAAATGTTTCTCTAAAAAGAGGTTTTGGAATTTTAAAATTTAAAATATTCT
1 AATCTTGACATCTATAAATGCTCCTCTAAAAAGAGGCCTTAAAACTTTAAAATTTAAAATATTCT
*
20530737 GCCCAAAAGACTTACG
66 ACCCAAAAGACTTACG
* * *
20530753 AATCTTGACATCTATAAATGCTCCTTTAAAAAGCGGCCTTAAAACTTTAAAATTTAAAATATTTT
1 AATCTTGACATCTATAAATGCTCCTCTAAAAAGAGGCCTTAAAACTTTAAAATTTAAAATATTCT
**
20530818 ACCTGAAAGACTTACG
66 ACCCAAAAGACTTACG
20530834 AATCTT
1 AATCTT
20530840 TTCCTGATAT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (81 bp):
AATCTTGACATCTATAAATGCTCCTCTAAAAAGAGGCCTTAAAACTTTAAAATTTAAAATATTCT
ACCCAAAAGACTTACG
Found at i:20531321 original size:43 final size:45
Alignment explanation
Indices: 20531234--20531318 Score: 102
Period size: 44 Copynumber: 1.9 Consensus size: 45
20531224 CTTAAAACTC
*
20531234 GGATGCTAGCTAATCTAGGCTTAAGGTGCCAACTAATATGGGCTT
1 GGATGCTAGCTAATCTAGGCTTAAGGTGCCAACTAACATGGGCTT
* ** *
20531279 GGATGC-AGCTACTCTAGG-TTTGGGTGCCAGCTAAACATGG
1 GGATGCTAGCTAATCTAGGCTTAAGGTGCCAACT-AACATGG
20531319 CTTAAAGTCG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
43 11 0.32
44 17 0.50
45 6 0.18
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (45 bp):
GGATGCTAGCTAATCTAGGCTTAAGGTGCCAACTAACATGGGCTT
Found at i:20531415 original size:28 final size:29
Alignment explanation
Indices: 20531352--20531416 Score: 98
Period size: 28 Copynumber: 2.3 Consensus size: 29
20531342 CTGGGCTTAA
20531352 ATGCTTAAATCTATATGCCAGCTAAACTG
1 ATGCTTAAATCTATATGCCAGCTAAACTG
* *
20531381 A-GTTTAAATCTGTATGCCAGCTAAACT-
1 ATGCTTAAATCTATATGCCAGCTAAACTG
20531408 ATGCTTAAA
1 ATGCTTAAA
20531417 ACTCCTAGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 1 0.03
28 30 0.94
29 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (29 bp):
ATGCTTAAATCTATATGCCAGCTAAACTG
Found at i:20533735 original size:12 final size:12
Alignment explanation
Indices: 20533718--20533770 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
20533708 ATTTAATTTT
20533718 TTTTTTTTTTGC
1 TTTTTTTTTTGC
*
20533730 TTTTTTTCTTG-
1 TTTTTTTTTTGC
20533741 TTTTTTTTTTGTAC
1 TTTTTTTTTTG--C
* *
20533755 TTTTTTCTTTAC
1 TTTTTTTTTTGC
20533767 TTTT
1 TTTT
20533771 CTTTGCACAC
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 10 0.29
12 15 0.44
14 9 0.26
ACGTcount: A:0.04, C:0.09, G:0.06, T:0.81
Consensus pattern (12 bp):
TTTTTTTTTTGC
Found at i:20535768 original size:17 final size:16
Alignment explanation
Indices: 20535746--20535792 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 16
20535736 TTTATATATT
20535746 ATTATTTACATGATTA
1 ATTATTTACATGATTA
*
20535762 CATTATTTATAT-ATT-
1 -ATTATTTACATGATTA
*
20535777 ATTATTTGCATGATTA
1 ATTATTTACATGATTA
20535793 TATATTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
14 9 0.36
15 3 0.12
16 3 0.12
17 10 0.40
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.53
Consensus pattern (16 bp):
ATTATTTACATGATTA
Found at i:20535774 original size:31 final size:30
Alignment explanation
Indices: 20535736--20535800 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 30
20535726 TTTTGCAAGG
20535736 TTTATATATTATTATTTACATGATTACATTA
1 TTTATATATTATTATTTACATGATTACA-TA
* *
20535767 TTTATATATTATTATTTGCATGATTATATA
1 TTTATATATTATTATTTACATGATTACATA
20535797 TTTA
1 TTTA
20535801 ATTGCATGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 6 0.19
31 26 0.81
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.57
Consensus pattern (30 bp):
TTTATATATTATTATTTACATGATTACATA
Found at i:20535782 original size:14 final size:14
Alignment explanation
Indices: 20535736--20535783 Score: 60
Period size: 14 Copynumber: 3.2 Consensus size: 14
20535726 TTTTGCAAGG
20535736 TTTATATATTATTA
1 TTTATATATTATTA
*
20535750 TTTACATGATTACATTA
1 TTTATAT-ATT--ATTA
20535767 TTTATATATTATTA
1 TTTATATATTATTA
20535781 TTT
1 TTT
20535784 GCATGATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 13 0.45
15 3 0.10
16 3 0.10
17 10 0.34
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (14 bp):
TTTATATATTATTA
Done.