Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 129 of 147
Found at i:23225588 original size:34 final size:34
Alignment explanation
Indices: 23225545--23225626 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 34
23225535 ACCAGAGACT
* *
23225545 ATGAAACTTTAAGT-GACTTCTCTAACTAGAGGCA
1 ATGAAACTTTAAATAG-CTTATCTAACTAGAGGCA
* *
23225579 ATGAAACTTTAAATAGCTTATCTGACTAGAGGTA
1 ATGAAACTTTAAATAGCTTATCTAACTAGAGGCA
*
23225613 ATGAAATTTTAAAT
1 ATGAAACTTTAAAT
23225627 TAAAAATCTG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
34 41 0.98
35 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (34 bp):
ATGAAACTTTAAATAGCTTATCTAACTAGAGGCA
Found at i:23225703 original size:13 final size:13
Alignment explanation
Indices: 23225685--23225709 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23225675 GTTACATTTT
23225685 CTTTTGCTTTTGA
1 CTTTTGCTTTTGA
23225698 CTTTTGCTTTTG
1 CTTTTGCTTTTG
23225710 TTGGTCTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.16, G:0.16, T:0.64
Consensus pattern (13 bp):
CTTTTGCTTTTGA
Found at i:23226086 original size:21 final size:22
Alignment explanation
Indices: 23226039--23226087 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
23226029 AATCAAAAAA
23226039 AAAAAATCAATAGAGAAAAAGT
1 AAAAAATCAATAGAGAAAAAGT
*
23226061 -AAAAAT-AA-AGTAGAAAAATT
1 AAAAAATCAATAG-AGAAAAAGT
23226081 AAAAAAT
1 AAAAAAT
23226088 TTTTTATAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 2 0.08
20 10 0.42
21 12 0.50
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.16
Consensus pattern (22 bp):
AAAAAATCAATAGAGAAAAAGT
Found at i:23226209 original size:24 final size:24
Alignment explanation
Indices: 23226177--23226224 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
23226167 TATAAATGCC
23226177 CACGTGCTTTGGAATCAATTATGA
1 CACGTGCTTTGGAATCAATTATGA
23226201 CACGTGCTTTGGAATCAATTATGA
1 CACGTGCTTTGGAATCAATTATGA
23226225 TTCAATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (24 bp):
CACGTGCTTTGGAATCAATTATGA
Found at i:23228405 original size:148 final size:147
Alignment explanation
Indices: 23228050--23228452 Score: 419
Period size: 148 Copynumber: 2.8 Consensus size: 147
23228040 TAATTGAAGT
* * * *** * *
23228050 TTTATTTACTTTTTACCATAGACTCT-ATCTCTGAAGTGTGTGTCTTTTTTTCTTTACTC-TTTT
1 TTTATTCA-TTTTTACCCTGGACTCTCATCTCTGAAGTACATGTCTTTATTTCTTTGCTCTTTTT
* * *
23228113 TTTTGGAAACATCTAACTTCAACTTTAGCATTCTACTTTCTTGAATTTTATCTTTTTTTTTTACT
65 TTTTGGAAACACCTAACTTCAACTTTAGCATTCTACTTTCTTGAATTCTATCTTTTTTTTTTACA
23228178 TGAAATTCTAACTAAAAC
130 TGAAATTCTAACTAAAAC
* * * * * *
23228196 TTTATTCATTTTTTCCCTTGACTCTCATCTCTGAGGTACATGTCTTTATGTATTTGTTCTTTATT
1 TTTATTCATTTTTACCCTGGACTCTCATCTCTGAAGTACATGTCTTTATTTCTTTGCTCTTT-TT
*
23228261 TTTTGGAAACACCTGACTTCAACTTTAGCATTCTAC-TTCTTGAATTCTAT-TTTCTTTTTTTAC
65 TTTTGGAAACACCTAACTTCAACTTTAGCATTCTACTTTCTTGAATTCTATCTTT-TTTTTTTAC
* *
23228324 ATGGAATTCTAACTAAAGC
129 ATGAAATTCTAACTAAAAC
* * * *
23228343 TTTATTCACTTTTTACCCTGGATTCTTAT-TTTCGAAGTGCATGTCTTTATTTCTTTGCTC----
1 TTTATTCA-TTTTTACCCTGGACTCTCATCTCT-GAAGTACATGTCTTTATTTCTTTGCTCTTTT
* ** * * * *
23228403 TTTTGGGAAACATTTGACTTCAACTTTAGTAATCTATTTTCTTGAATTCT
64 TTTTTGGAAACACCTAACTTCAACTTTAGCATTCTACTTTCTTGAATTCT
23228453 TGGGATTCTA
Statistics
Matches: 215, Mismatches: 35, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
143 31 0.14
144 12 0.06
145 14 0.07
146 34 0.16
147 50 0.23
148 74 0.34
ACGTcount: A:0.22, C:0.18, G:0.10, T:0.51
Consensus pattern (147 bp):
TTTATTCATTTTTACCCTGGACTCTCATCTCTGAAGTACATGTCTTTATTTCTTTGCTCTTTTTT
TTTGGAAACACCTAACTTCAACTTTAGCATTCTACTTTCTTGAATTCTATCTTTTTTTTTTACAT
GAAATTCTAACTAAAAC
Found at i:23228535 original size:18 final size:18
Alignment explanation
Indices: 23228508--23228561 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 18
23228498 ATATTTGAGG
*
23228508 TGCTTGTTTTTCTTTC-TT
1 TGCTT-TTTTTTTTTCTTT
23228526 TGC-TTTTTTTTTTCTTT
1 TGCTTTTTTTTTTTCTTT
23228543 TGCTCTTTTTTTTTT-TTT
1 TGCT-TTTTTTTTTTCTTT
23228561 T
1 T
23228562 ATAAAATCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 9 0.28
17 6 0.19
18 7 0.22
19 10 0.31
ACGTcount: A:0.00, C:0.13, G:0.07, T:0.80
Consensus pattern (18 bp):
TGCTTTTTTTTTTTCTTT
Found at i:23228544 original size:17 final size:17
Alignment explanation
Indices: 23228508--23228560 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
23228498 ATATTTGAGG
23228508 TGCTTGTTTTTCTTTC-TT
1 TGCTT-TTTTT-TTTCTTT
23228526 TGCTTTTTTTTTTCTTT
1 TGCTTTTTTTTTTCTTT
23228543 TGCTCTTTTTTTTT-TTT
1 TGCT-TTTTTTTTTCTTT
23228560 T
1 T
23228561 TATAAAATCA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
16 4 0.12
17 15 0.45
18 14 0.42
ACGTcount: A:0.00, C:0.13, G:0.08, T:0.79
Consensus pattern (17 bp):
TGCTTTTTTTTTTCTTT
Found at i:23234124 original size:35 final size:37
Alignment explanation
Indices: 23234065--23234159 Score: 95
Period size: 38 Copynumber: 2.6 Consensus size: 37
23234055 CAATATTTGT
* * *
23234065 ATGAAATGGAATGCATGTACTATC-TATTA-ATGTGG
1 ATGAGATGAAATGCATGTACTATCTTATTAGATGTGC
* *
23234100 ATGAGATGAAATGTATGTATTATCTTATTATGATGTGC
1 ATGAGATGAAATGCATGTACTATCTTATTA-GATGTGC
** *
23234138 ATGAGATGGGATGCATATACTA
1 ATGAGATGAAATGCATGTACTA
23234160 CCTATTAAGA
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
35 20 0.43
36 5 0.11
38 22 0.47
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (37 bp):
ATGAGATGAAATGCATGTACTATCTTATTAGATGTGC
Found at i:23234142 original size:38 final size:35
Alignment explanation
Indices: 23234065--23234209 Score: 105
Period size: 35 Copynumber: 4.1 Consensus size: 35
23234055 CAATATTTGT
* * *
23234065 ATGAAATGGAATGCATGTACTATCTATTAATGTGG
1 ATGAGATGAAATGCATGTACTATCTATTAATGTGC
* *
23234100 ATGAGATGAAATGTATGTATTATCTTATTATGATGTGC
1 ATGAGATGAAATGCATGTACTATC-TATTA--ATGTGC
** * *
23234138 ATGAGATGGGATGCATATACTACCTATTAA-GATGC
1 ATGAGATGAAATGCATGTACTATCTATTAATG-TGC
* * ** *
23234173 CTGATATGTGATACATGTACTATCTATT-ATGATGC
1 ATGAGATGAAATGCATGTACTATCTATTAATG-TGC
23234208 AT
1 AT
23234210 AGGATGGAAG
Statistics
Matches: 87, Mismatches: 18, Indels: 10
0.76 0.16 0.09
Matches are distributed among these distances:
34 2 0.02
35 52 0.60
36 5 0.06
37 5 0.06
38 23 0.26
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (35 bp):
ATGAGATGAAATGCATGTACTATCTATTAATGTGC
Found at i:23236566 original size:3 final size:3
Alignment explanation
Indices: 23236560--23236615 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
23236550 AAAAGTTCCG
23236560 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23236608 TAT TAT TA
1 TAT TAT TA
23236616 AACTTTTGTG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:23239348 original size:11 final size:11
Alignment explanation
Indices: 23239332--23239356 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23239322 GCTTTTGGAT
23239332 AAAAAATTACA
1 AAAAAATTACA
23239343 AAAAAATTACA
1 AAAAAATTACA
23239354 AAA
1 AAA
23239357 TATCGATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAATTACA
Found at i:23240387 original size:8 final size:9
Alignment explanation
Indices: 23240353--23240386 Score: 52
Period size: 10 Copynumber: 3.8 Consensus size: 9
23240343 ATTTATTTTA
23240353 TAATAAAAT
1 TAATAAAAT
23240362 ATAATAAAAT
1 -TAATAAAAT
23240372 TAAT-AAAT
1 TAATAAAAT
23240380 TAATAAA
1 TAATAAA
23240387 TATATTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.35
9 6 0.26
10 9 0.39
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
TAATAAAAT
Found at i:23240549 original size:16 final size:15
Alignment explanation
Indices: 23240516--23240549 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
23240506 AAAGTTTGAA
*
23240516 AATATAAAAAATTAT
1 AATATAAAAAAATAT
23240531 AATATAAAATAAATAT
1 AATATAAAA-AAATAT
23240547 AAT
1 AAT
23240550 TTTAAGATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AATATAAAAAAATAT
Found at i:23246790 original size:14 final size:14
Alignment explanation
Indices: 23246771--23246801 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
23246761 TTTCATTTTT
23246771 AAATATATTTTATA
1 AAATATATTTTATA
*
23246785 AAATATGTTTTATA
1 AAATATATTTTATA
23246799 AAA
1 AAA
23246802 ACAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
AAATATATTTTATA
Found at i:23247033 original size:32 final size:32
Alignment explanation
Indices: 23246921--23247042 Score: 97
Period size: 32 Copynumber: 3.9 Consensus size: 32
23246911 TAATAAGTCT
* * *
23246921 ATTTTTTTAAATGATAT-GAAAATTTTTACATA
1 ATTTTTTAAAATGATATAG-AGATTTTTACTTA
* * * *
23246953 ATATTTTAAAATGATATGGAG-GTTTTATTTA
1 ATTTTTTAAAATGATATAGAGATTTTTACTTA
** ***
23246984 ATTTCCTAAACCAATATAGAGATTTTTACTTA
1 ATTTTTTAAAATGATATAGAGATTTTTACTTA
*
23247016 ATTTTTTAAAATGATATATA-ATTTTTA
1 ATTTTTTAAAATGATATAGAGATTTTTA
23247043 AAAAAATTAT
Statistics
Matches: 67, Mismatches: 21, Indels: 5
0.72 0.23 0.05
Matches are distributed among these distances:
31 28 0.42
32 38 0.57
33 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (32 bp):
ATTTTTTAAAATGATATAGAGATTTTTACTTA
Found at i:23249720 original size:52 final size:52
Alignment explanation
Indices: 23249617--23249720 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 52
23249607 TGTAATCATT
*
23249617 AATATGAATTTTGAAATTGATTTTAGAGTAAAAAAATAGGATAAGACAGAGA
1 AATATGAATTTTGAAATTGATTTTAGAGTAAAAAAATAGAATAAGACAGAGA
* * * * *
23249669 AATATGGATTTTGAGATTGATTTTGGAGTAAAAAAATAGAATGAGATAGAGA
1 AATATGAATTTTGAAATTGATTTTAGAGTAAAAAAATAGAATAAGACAGAGA
23249721 TTATTTTGAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.47, C:0.01, G:0.22, T:0.30
Consensus pattern (52 bp):
AATATGAATTTTGAAATTGATTTTAGAGTAAAAAAATAGAATAAGACAGAGA
Found at i:23252721 original size:27 final size:28
Alignment explanation
Indices: 23252678--23252738 Score: 97
Period size: 27 Copynumber: 2.2 Consensus size: 28
23252668 ATGTAGGAGA
23252678 TAAATAAAAGGACTTTTTGTTTAAAC-T
1 TAAATAAAAGGACTTTTTGTTTAAACTT
**
23252705 TAAATAAAAGGGTTTTTTGTTTAAACTT
1 TAAATAAAAGGACTTTTTGTTTAAACTT
23252733 TAAATA
1 TAAATA
23252739 GTTGATTCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 24 0.77
28 7 0.23
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (28 bp):
TAAATAAAAGGACTTTTTGTTTAAACTT
Found at i:23253435 original size:5 final size:5
Alignment explanation
Indices: 23253425--23253524 Score: 58
Period size: 5 Copynumber: 20.8 Consensus size: 5
23253415 TTTCTCCAAA
23253425 AAAAT AAAAT ACAGAAT -AAAT -AAAT -AAAT AATATCAT AAAAT -AAAT
1 AAAAT AAAAT A-A-AAT AAAAT AAAAT AAAAT AA-A--AT AAAAT AAAAT
* *
23253471 AAAAC AAAAT AAAAT --AAT AAAAT CAAAAT AAAA- AAAA- AAAAG AAAA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT
23253517 AAAA- AAAA
1 AAAAT AAAA
23253525 CTCACCACTA
Statistics
Matches: 82, Mismatches: 2, Indels: 23
0.77 0.02 0.21
Matches are distributed among these distances:
3 3 0.04
4 31 0.38
5 33 0.40
6 7 0.09
7 4 0.05
8 4 0.05
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:23253484 original size:19 final size:19
Alignment explanation
Indices: 23253460--23253520 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
23253450 AAATAATATC
23253460 ATAAAATAAATAAAACAAA
1 ATAAAATAAATAAAACAAA
23253479 ATAAAAT-AATAAAATCAAA
1 ATAAAATAAATAAAA-CAAA
* *
23253498 ATAAAA-AAAAAAAAGAAA
1 ATAAAATAAATAAAACAAA
23253516 A-AAAA
1 ATAAAA
23253521 AAAACTCACC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
17 4 0.11
18 11 0.29
19 23 0.61
ACGTcount: A:0.82, C:0.03, G:0.02, T:0.13
Consensus pattern (19 bp):
ATAAAATAAATAAAACAAA
Found at i:23253486 original size:32 final size:32
Alignment explanation
Indices: 23253446--23253516 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
23253436 CAGAATAAAT
** *
23253446 AAAT-AAATAATATCAT-AAAATAAATAAAACA
1 AAATAAAATAATAAAATCAAAATAAA-AAAAAA
23253477 AAATAAAATAATAAAATCAAAATAAAAAAAAA
1 AAATAAAATAATAAAATCAAAATAAAAAAAAA
*
23253509 AAAGAAAA
1 AAATAAAA
23253517 AAAAAAAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 4 0.12
32 22 0.65
33 8 0.24
ACGTcount: A:0.77, C:0.04, G:0.01, T:0.17
Consensus pattern (32 bp):
AAATAAAATAATAAAATCAAAATAAAAAAAAA
Found at i:23253498 original size:14 final size:12
Alignment explanation
Indices: 23253423--23253509 Score: 61
Period size: 13 Copynumber: 6.9 Consensus size: 12
23253413 TATTTCTCCA
23253423 AAAAAATAAAAT
1 AAAAAATAAAAT
* *
23253435 ACAGAAT-AAAT
1 AAAAAATAAAAT
*
23253446 AAATAAATAATAT
1 AAA-AAATAAAAT
* *
23253459 CATAAAATAAATAA
1 -AAAAAATAAA-AT
23253473 AACAAAATAAAAT
1 AA-AAAATAAAAT
23253486 AATAAAATCAAAAT
1 AA-AAAAT-AAAAT
23253500 AAAAAA-AAAA
1 AAAAAATAAAA
23253510 AAGAAAAAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
11 10 0.17
12 8 0.14
13 22 0.38
14 18 0.31
ACGTcount: A:0.76, C:0.05, G:0.01, T:0.18
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:23254030 original size:24 final size:24
Alignment explanation
Indices: 23254003--23254054 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
23253993 AGATTTCCAG
* *
23254003 TTTTAGTTTTTACAAAGAAAAATT
1 TTTTAGTTTCTACAAACAAAAATT
* * *
23254027 TTTTTGTTTCTGCAAACAAAATTT
1 TTTTAGTTTCTACAAACAAAAATT
23254051 TTTT
1 TTTT
23254055 TCTTTATTAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.52
Consensus pattern (24 bp):
TTTTAGTTTCTACAAACAAAAATT
Found at i:23254600 original size:70 final size:71
Alignment explanation
Indices: 23254488--23254681 Score: 167
Period size: 74 Copynumber: 2.7 Consensus size: 71
23254478 ACAAGCTATG
* * * * * * * * *
23254488 AAACTTTAAATGGTTCTTTTGACTAAAGGCTATGACATTTTAAA-AGAA-GCTCATTTGACCAGA
1 AAACTTTAAATAGCTCCTTTGACTAGAGGCAATGA-ACTTTAAATAAAAGGCTCATTTAACAAGA
*
23254551 AGTAATA
65 AGCAATA
*
23254558 AAACTTTAAATAGCTCCTTTGACTAGAGGCAATGAAGCTTTAAATTTAAAAGGCTTATTTAACAA
1 AAACTTTAAATAGCTCCTTTGACTAGAGGCAATGAA-CTTTAAA--TAAAAGGCTCATTTAACAA
* *
23254623 TAAGCAATG
63 GAAGCAATA
* * * *
23254632 AAATTTTAAATAGCTCCTCTGACCAGAGGTAATGAAACTTTAAATTAAAA
1 AAACTTTAAATAGCTCCTTTGACTAGAGGCAATG-AACTTTAAA-TAAAA
23254682 ATTTAAGAAA
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
69 1 0.01
70 36 0.36
73 9 0.09
74 53 0.52
75 2 0.02
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.31
Consensus pattern (71 bp):
AAACTTTAAATAGCTCCTTTGACTAGAGGCAATGAACTTTAAATAAAAGGCTCATTTAACAAGAA
GCAATA
Found at i:23268353 original size:41 final size:39
Alignment explanation
Indices: 23268308--23268514 Score: 146
Period size: 41 Copynumber: 5.1 Consensus size: 39
23268298 TGAAATTTTA
* * *
23268308 AAAAGGCTCCTATGACCAAAGGCACTAAAACTTTAAAATT
1 AAAAGGCTCCTTTAACCAGAGGCA-TAAAACTTTAAAATT
* * *
23268348 CAAAAGGCTCCTTTAACCAGAGGCAGTGAAGCTTTAGAATTT
1 -AAAAGGCTCCTTTAACCAGAGGCA-TAAAACTTTA-AAATT
* * *
23268390 AAAAAGCTCCTTTAATCAGAGGCAAAGAAACTTTAAAATT
1 AAAAGGCTCCTTTAACCAGAGGCATA-AAACTTTAAAATT
* * * * * **
23268430 AAAAGGCTCCTCTGATCAGAGGTAATGAAACTTTAGATTTT
1 AAAAGGCTCCTTTAACCAGAGG-CATAAAACTTTA-AAATT
* * * *
23268471 AAAAGGCT-CTTCTGACTAGAGGCAATGAAACTTTAAATTT
1 AAAAGGCTCCTT-TAACCAGAGGC-ATAAAACTTTAAAATT
23268511 AAAA
1 AAAA
23268515 ATCTGATATA
Statistics
Matches: 134, Mismatches: 26, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
40 41 0.31
41 89 0.66
42 4 0.03
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (39 bp):
AAAAGGCTCCTTTAACCAGAGGCATAAAACTTTAAAATT
Found at i:23268466 original size:81 final size:81
Alignment explanation
Indices: 23268335--23268514 Score: 220
Period size: 81 Copynumber: 2.2 Consensus size: 81
23268325 AAAGGCACTA
* * *
23268335 AAACTTTAAAATTCAAAAGGCTCCTTTAACCAGAGGCAGTGAAGCTTTAGAATTTAAAAAGCTCC
1 AAACTTTAAAATT-AAAAGGCTCCTCTAACCAGAGGCAATGAAACTTTAGAATTTAAAAAGCT-C
23268400 TT-TAA-TCAGAGGCAAAG
64 TTCTAACT-AGAGGCAAAG
* * * * *
23268417 AAACTTTAAAATTAAAAGGCTCCTCTGATCAGAGGTAATGAAACTTTAGATTTTAAAAGGCTCTT
1 AAACTTTAAAATTAAAAGGCTCCTCTAACCAGAGGCAATGAAACTTTAGAATTTAAAAAGCTCTT
* *
23268482 CTGACTAGAGGCAATG
66 CTAACTAGAGGCAAAG
*
23268498 AAACTTTAAATTTAAAA
1 AAACTTTAAAATTAAAA
23268515 ATCTGATATA
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
80 3 0.04
81 68 0.80
82 14 0.16
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (81 bp):
AAACTTTAAAATTAAAAGGCTCCTCTAACCAGAGGCAATGAAACTTTAGAATTTAAAAAGCTCTT
CTAACTAGAGGCAAAG
Found at i:23268733 original size:34 final size:34
Alignment explanation
Indices: 23268695--23268819 Score: 124
Period size: 34 Copynumber: 3.5 Consensus size: 34
23268685 TTAACCAAAA
*
23268695 GCAATGAAACTGTAAATAGCTCTTCTGACCAGAG
1 GCAATGAAACTTTAAATAGCTCTTCTGACCAGAG
* * *
23268729 GCAATGAAATTTTAAATTTAAAAGGCTCTTCTAACCAAAG
1 GCAATGAAACTTTAAA--T---A-GCTCTTCTGACCAGAG
* * **
23268769 GTAATGAAACTTTAAATATCTCTTCTGACTTGAG
1 GCAATGAAACTTTAAATAGCTCTTCTGACCAGAG
23268803 GCAATGAAACTTTAAAT
1 GCAATGAAACTTTAAAT
23268820 TAAAAATTTG
Statistics
Matches: 73, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
34 41 0.56
35 1 0.01
36 1 0.01
38 1 0.01
39 1 0.01
40 28 0.38
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.30
Consensus pattern (34 bp):
GCAATGAAACTTTAAATAGCTCTTCTGACCAGAG
Found at i:23268775 original size:74 final size:73
Alignment explanation
Indices: 23268682--23268825 Score: 207
Period size: 74 Copynumber: 2.0 Consensus size: 73
23268672 AAGGGAAACT
*
23268682 TCTTTAACCAAAAGCAATGAAACTGTAAATAGCTCTTCTGACCAGAGGCAATGAAATTTTAAATT
1 TCTTTAACCAAAAGCAATGAAACTGTAAATAGCTCTTCTGACCAGAGGCAATGAAACTTTAAATT
*
23268747 TAAAAGGC
66 AAAAAGGC
* * * * **
23268755 TCTTCTAACCAAAGGTAATGAAACTTTAAATATCTCTTCTGACTTGAGGCAATGAAACTTTAAAT
1 TCTT-TAACCAAAAGCAATGAAACTGTAAATAGCTCTTCTGACCAGAGGCAATGAAACTTTAAAT
23268820 TAAAAA
65 TAAAAA
23268826 TTTGATAGGA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
73 4 0.06
74 58 0.94
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (73 bp):
TCTTTAACCAAAAGCAATGAAACTGTAAATAGCTCTTCTGACCAGAGGCAATGAAACTTTAAATT
AAAAAGGC
Found at i:23268977 original size:34 final size:34
Alignment explanation
Indices: 23268939--23269020 Score: 119
Period size: 34 Copynumber: 2.4 Consensus size: 34
23268929 ACCAGATGCT
* * *
23268939 ATGAAACTTTAAATAGCTCATCCGACTAGAGATA
1 ATGAAACTTTAAATAACTCATCCAACTAGAGACA
* *
23268973 ATGAAACTTTAAATAACTCATCTAACTAGAGGCA
1 ATGAAACTTTAAATAACTCATCCAACTAGAGACA
23269007 ATGAAACTTTAAAT
1 ATGAAACTTTAAAT
23269021 TAAAAACTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (34 bp):
ATGAAACTTTAAATAACTCATCCAACTAGAGACA
Found at i:23269710 original size:4 final size:4
Alignment explanation
Indices: 23269701--23269746 Score: 56
Period size: 4 Copynumber: 11.2 Consensus size: 4
23269691 CATAATTGTC
** *
23269701 TATT TATT TATT TATT TATT TATT CGTT TGTT TATTT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT TA-TT TATT TATT T
23269747 GACTATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
4 33 0.89
5 4 0.11
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:23271524 original size:13 final size:13
Alignment explanation
Indices: 23271506--23271530 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23271496 AGGTGCATGT
23271506 CTTTTTTTTTTTA
1 CTTTTTTTTTTTA
23271519 CTTTTTTTTTTT
1 CTTTTTTTTTTT
23271531 TGAAACATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.08, G:0.00, T:0.88
Consensus pattern (13 bp):
CTTTTTTTTTTTA
Found at i:23271701 original size:140 final size:143
Alignment explanation
Indices: 23271484--23271849 Score: 375
Period size: 148 Copynumber: 2.5 Consensus size: 143
23271474 TTATCTCACG
* * * *
23271484 CTCTCATCTCCAAGGTGCATGTCTTTTTTTTTTTACTTTTTTTTTTTTG-AAACATTTGACTTCA
1 CTCTCATCTCCAAGGTGCATGTCTTTTTTTCTTTACTCTTTTTTTTTTGAAAACATCTAACTTCA
* * * * ** *
23271548 ACATTCTA-CATTCTTTC-ATTTC-ATCTTTTTTTTTTACTTGGAATTATAA-CTGAA-GTTATT
66 AC-TT-TAGCATTCTTTCTAATTCTATC-TTCTTTTTAACTTGAAATTATAACCAAAACGTTATA
** *
23271608 CACTTTTTGCCTTGGA
128 CACTTTTTGCCCCGAA
* **
23271624 CTCTCATATCCAAGGTGTGTGTCTTTTTTTCTTTACTCTTTTTTTTTTGAAAACATCTAACTTCA
1 CTCTCATCTCCAAGGTGCATGTCTTTTTTTCTTTACTCTTTTTTTTTTGAAAACATCTAACTTCA
* * *
23271689 ACTTTAGTATTCTACTTTCTTGAATTCTATCTTCTTTTTAACTTGAAATTCTAACCAAAACTTTA
66 ACTTTAGCA-T-T-CTTTC-T-AATTCTATCTTCTTTTTAACTTGAAATTATAACCAAAACGTTA
*
23271754 TACATTTTTTGCCCCGAA
126 TACACTTTTTGCCCCGAA
** * * * *
23271772 CTCTCATCTCTGAGGTACAAGTCTTTTTTTCTTTGCTCTTTCTTTTTTGAAAACATCTAACTTCA
1 CTCTCATCTCCAAGGTGCATGTCTTTTTTTCTTTACTCTTTTTTTTTTGAAAACATCTAACTTCA
23271837 ACTTTAGCATTCT
66 ACTTTAGCATTCT
23271850 ACTTTTTTGA
Statistics
Matches: 184, Mismatches: 31, Indels: 17
0.79 0.13 0.07
Matches are distributed among these distances:
139 2 0.01
140 47 0.26
141 16 0.09
142 1 0.01
143 5 0.03
145 2 0.01
146 24 0.13
147 7 0.04
148 80 0.43
ACGTcount: A:0.22, C:0.20, G:0.08, T:0.50
Consensus pattern (143 bp):
CTCTCATCTCCAAGGTGCATGTCTTTTTTTCTTTACTCTTTTTTTTTTGAAAACATCTAACTTCA
ACTTTAGCATTCTTTCTAATTCTATCTTCTTTTTAACTTGAAATTATAACCAAAACGTTATACAC
TTTTTGCCCCGAA
Found at i:23271799 original size:147 final size:146
Alignment explanation
Indices: 23271644--23272005 Score: 444
Period size: 148 Copynumber: 2.5 Consensus size: 146
23271634 CAAGGTGTGT
*
23271644 GTCTTTTTTTCTTTACTCTTTTTTTTTTGAAAACATCTAACTTCAACTTTAGTATTCTACTTTCT
1 GTCTTTTTTTCTTT-CTCTTTTTTTTTTGAAAACATCTAACTTCAACTTTAGCATTCTACTTTCT
* * * * *
23271709 TGAATTCTATCTTCTTTTTAACTTGAAATTCTAACCAAAACTTTATACATTTTTTGCCCCGAACT
65 TGAATTCTATCTTCTTTTTAACATGAAATTCTAAACAAAACTTTATACACTTTTTACCCC-AAAT
23271774 CTCATCTCTGAGGTACAA
129 CTCATCTCTGAGGTACAA
* *
23271792 GTCTTTTTTTCTTTGCTCTTTCTTTTTTGAAAACATCTAACTTCAACTTTAGCATTCTACTTTTT
1 GTCTTTTTTTCTTT-CTCTTTTTTTTTTGAAAACATCTAACTTCAACTTTAGCATTCTACTTTCT
* * ** * *
23271857 TGAATTCTATCTTTTTTTTTACATGAAATTCTAAATGAAACTTTATTCACTTTTTATCCCAAATC
65 TGAATTCTATCTTCTTTTTAACATGAAATTCTAAACAAAACTTTATACACTTTTTACCCCAAATC
* * * *
23271922 TTATCTTTGAGGTGCAT
130 TCATCTCTGAGGTACAA
* * * * * *
23271939 GTCTTTCTTTT-TTT-GC--TTTTTCTTGGAAACATCTAACTTCAACTATAACAATCTACTTTCT
1 GTCTTT-TTTTCTTTCTCTTTTTTTTTTGAAAACATCTAACTTCAACTTTAGCATTCTACTTTCT
23272000 TGAATT
65 TGAATT
23272006 TTTAGGATTC
Statistics
Matches: 186, Mismatches: 27, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
143 44 0.24
145 1 0.01
147 26 0.14
148 115 0.62
ACGTcount: A:0.24, C:0.19, G:0.07, T:0.49
Consensus pattern (146 bp):
GTCTTTTTTTCTTTCTCTTTTTTTTTTGAAAACATCTAACTTCAACTTTAGCATTCTACTTTCTT
GAATTCTATCTTCTTTTTAACATGAAATTCTAAACAAAACTTTATACACTTTTTACCCCAAATCT
CATCTCTGAGGTACAA
Found at i:23272096 original size:12 final size:12
Alignment explanation
Indices: 23272069--23272116 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 12
23272059 GAAGTCTATG
*
23272069 TCTTTCTTTCTTT
1 TCTTT-TTTTTTT
23272082 TCTTTTTTTTTT
1 TCTTTTTTTTTT
23272094 TC--TTTTTTTT
1 TCTTTTTTTTTT
23272104 TCTTTTTTTTTT
1 TCTTTTTTTTTT
23272116 T
1 T
23272117 ATAAAACCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
10 10 0.31
12 17 0.53
13 5 0.16
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (12 bp):
TCTTTTTTTTTT
Found at i:23272097 original size:21 final size:22
Alignment explanation
Indices: 23272071--23272116 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
23272061 AGTCTATGTC
23272071 TTTC-TTTCTTTTCTTTTTTTT
1 TTTCTTTTCTTTTCTTTTTTTT
*
23272092 TTTCTTTTTTTTTCTTTTTTTT
1 TTTCTTTTCTTTTCTTTTTTTT
23272114 TTT
1 TTT
23272117 ATAAAACCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (22 bp):
TTTCTTTTCTTTTCTTTTTTTT
Found at i:23272099 original size:10 final size:10
Alignment explanation
Indices: 23272071--23272114 Score: 63
Period size: 10 Copynumber: 4.3 Consensus size: 10
23272061 AGTCTATGTC
23272071 TTTCTTTCTTT
1 TTTCTTT-TTT
23272082 TCTT-TTTTTT
1 T-TTCTTTTTT
23272092 TTTCTTTTTT
1 TTTCTTTTTT
23272102 TTTCTTTTTT
1 TTTCTTTTTT
23272112 TTT
1 TTT
23272115 TTATAAAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.06
10 23 0.74
11 4 0.13
12 2 0.06
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:23280446 original size:52 final size:52
Alignment explanation
Indices: 23280343--23280446 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 52
23280333 TGTAATCATT
*
23280343 AATATGAATTTTGAAATTGATTTTAGAGTAAAAAAATAGGATAAGACAGAGA
1 AATATGAATTTTGAAATTGATTTTAGAGTAAAAAAATAGAATAAGACAGAGA
* * * * *
23280395 AATATGGATTTTGAGATTGATTTTGGAGTAAAAAAATAGAATGAGATAGAGA
1 AATATGAATTTTGAAATTGATTTTAGAGTAAAAAAATAGAATAAGACAGAGA
23280447 TTATTTTGAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.47, C:0.01, G:0.22, T:0.30
Consensus pattern (52 bp):
AATATGAATTTTGAAATTGATTTTAGAGTAAAAAAATAGAATAAGACAGAGA
Found at i:23283448 original size:27 final size:28
Alignment explanation
Indices: 23283406--23283466 Score: 97
Period size: 27 Copynumber: 2.2 Consensus size: 28
23283396 ATGTAGGAGA
*
23283406 TAAATAAAAGGACTTTTTGTTTAAAC-T
1 TAAATAAAAGGACTTTCTGTTTAAACTT
*
23283433 TAAATAAAAGGGCTTTCTGTTTAAACTT
1 TAAATAAAAGGACTTTCTGTTTAAACTT
23283461 TAAATA
1 TAAATA
23283467 GTTCCATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 24 0.77
28 7 0.23
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.39
Consensus pattern (28 bp):
TAAATAAAAGGACTTTCTGTTTAAACTT
Found at i:23297560 original size:16 final size:16
Alignment explanation
Indices: 23297541--23297590 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
23297531 GTTCTAAGGT
23297541 TTTGAATTTTAGGGAG
1 TTTGAATTTTAGGGAG
* * *
23297557 TTTGAATTTAAGAGAT
1 TTTGAATTTTAGGGAG
*
23297573 TTTGGATTTTAGGG-G
1 TTTGAATTTTAGGGAG
23297588 TTT
1 TTT
23297591 TAGAACCTTA
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
15 3 0.11
16 24 0.89
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (16 bp):
TTTGAATTTTAGGGAG
Found at i:23298052 original size:13 final size:12
Alignment explanation
Indices: 23298027--23298051 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23298017 TAATAATATA
23298027 TAAAAAAATTTT
1 TAAAAAAATTTT
23298039 TAAAAAAATTTT
1 TAAAAAAATTTT
23298051 T
1 T
23298052 TTTACCCGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAAAAAATTTT
Found at i:23298947 original size:22 final size:22
Alignment explanation
Indices: 23298904--23298955 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
23298894 CCATAAGTCA
* **
23298904 AGAAATTATGCCCGGAGATCTT
1 AGAAATCATGCCCAAAGATCTT
*
23298926 AGAAATCATGCCCAAAGGTCTT
1 AGAAATCATGCCCAAAGATCTT
23298948 AGAGAATC
1 AGA-AATC
23298956 GACTGAGATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (22 bp):
AGAAATCATGCCCAAAGATCTT
Found at i:23299089 original size:87 final size:86
Alignment explanation
Indices: 23298927--23299209 Score: 316
Period size: 87 Copynumber: 3.3 Consensus size: 86
23298917 GGAGATCTTA
* ** * * * *
23298927 GAAATCATGCCCAAAGGTCTTAGAGAATCGACTGAGATAACACCACAAGTTGAGAATAATGAATC
1 GAAATTATGCCCGGAGGTCTTACAGAATCGACTGAGACAACACCGCAAGTCGAGAATAATGAATC
* **
23298992 GATCGAGATAATACCGTAAATC
66 GATCG-GATAACACCGCGAATC
* * * * *
23299014 AAAATTATGCCCGGAGGTCTTACAGAATTGACTGAGACAACACTGCAAATCGA-AATTAAAGAAT
1 GAAATTATGCCCGGAGGTCTTACAGAATCGACTGAGACAACACCGCAAGTCGAGAA-TAATGAAT
*
23299078 CAATCTGGATAACACCGCGAATC
65 CGATC-GGATAACACCGCGAATC
* * * *
23299101 GAAATCATGTCTGGAGGTCTTACAAAATCGACTGAGACAACACCGCAAGTCGAGAATAATGAATC
1 GAAATTATGCCCGGAGGTCTTACAGAATCGACTGAGACAACACCGCAAGTCGAGAATAATGAATC
23299166 GATCGGGATAACACCGCGAATC
66 GATC-GGATAACACCGCGAATC
* * *
23299188 GAATTTATACCCGAAGGTCTTA
1 GAAATTATGCCCGGAGGTCTTA
23299210 GAAATCAAGA
Statistics
Matches: 160, Mismatches: 33, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
86 2 0.01
87 155 0.97
88 3 0.02
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (86 bp):
GAAATTATGCCCGGAGGTCTTACAGAATCGACTGAGACAACACCGCAAGTCGAGAATAATGAATC
GATCGGATAACACCGCGAATC
Found at i:23299843 original size:65 final size:66
Alignment explanation
Indices: 23299774--23300267 Score: 522
Period size: 65 Copynumber: 7.6 Consensus size: 66
23299764 CTTGAAACTC
* * * * * *
23299774 TAAAACTTCTTTTAGGGTCAAATAAACTGGGCTT-AAATTTTATTGAA-GGCCAGCTAAACTAGG
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCTTAAAATTTCATT-AATGGCCAGATAAACTAGG
23299837 CT
65 CT
* *
23299839 TAAAACCTCATTTGA-GGTCAGATAAACTGGGCTTAAAACTTCATTAATGGCCAGATAAACTAGG
1 TAAAACTTCA-TTGATGGTCAGATAAACTGGGCTTAAAATTTCATTAATGGCCAGATAAACTAGG
23299903 CT
65 CT
* * ** *
23299905 T-AAATTTCATTGATGGTAAGATAAACTGGGCTTAAAGCTTCATTAATGGCTAGATAAACTAGGC
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCTTAAAATTTCATTAATGGCCAGATAAACTAGGC
23299969 T
66 T
* * * *
23299970 TAAAACTTCATTGATGG-CTAGATAAACTAGGCTT-AAATGTCATTAATGGTCAGCTAAACTAGG
1 TAAAACTTCATTGATGGTC-AGATAAACTGGGCTTAAAATTTCATTAATGGCCAGATAAACTAGG
23300033 CT
65 CT
* * * * * *
23300035 TAAAGCTTCATTAATGATTAGATAAACTGGGCTTAAAATTTCATTGATGGCCAGATAAAGT-GTG
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCTTAAAATTTCATTAATGGCCAGATAAACTAG-G
23300099 -T
65 CT
* * * * *
23300100 TTAAA-TGTCATTGATAGCCAGATAAATTGGGCTTAAAACTTCATTAATGGCCAGATAAACTAGG
1 TAAAACT-TCATTGATGGTCAGATAAACTGGGCTTAAAATTTCATTAATGGCCAGATAAACTAGG
23300164 CT
65 CT
* * * * * * * *
23300166 TAAAGCTTCATTAATGGCCAGATAAACT-GACTTAAAATTTTATTGATGGTCAGATAAACTGGGC
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCTTAAAATTTCATTAATGGCCAGATAAACTAGGC
23300230 T
66 T
* * *
23300231 TAAAACCTCATTTAAGGTCAGATAAACTGGGCTTAAA
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCTTAAA
23300268 TTTTTTAATT
Statistics
Matches: 356, Mismatches: 59, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
64 5 0.01
65 241 0.68
66 109 0.31
67 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (66 bp):
TAAAACTTCATTGATGGTCAGATAAACTGGGCTTAAAATTTCATTAATGGCCAGATAAACTAGGC
T
Found at i:23299872 original size:33 final size:33
Alignment explanation
Indices: 23299774--23300267 Score: 450
Period size: 33 Copynumber: 15.1 Consensus size: 33
23299764 CTTGAAACTC
* * * *
23299774 TAAAACTTCTTTTAGGGTCAAATAAACTGGGCT
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCT
* * * * * *
23299807 T-AAATTTTATTGAAGGCCAGCTAAACTAGGCT
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCT
*
23299839 TAAAACCTCATTTGA-GGTCAGATAAACTGGGCT
1 TAAAACTTCA-TTGATGGTCAGATAAACTGGGCT
* * *
23299872 TAAAACTTCATTAATGGCCAGATAAACTAGGCT
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCT
* *
23299905 T-AAATTTCATTGATGGTAAGATAAACTGGGCT
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCT
* * *
23299937 TAAAGCTTCATTAATGG-CTAGATAAACTAGGCT
1 TAAAACTTCATTGATGGTC-AGATAAACTGGGCT
*
23299970 TAAAACTTCATTGATGG-CTAGATAAACTAGGCT
1 TAAAACTTCATTGATGGTC-AGATAAACTGGGCT
* * *
23300003 T-AAA-TGTCATTAATGGTCAGCTAAACTAGGCT
1 TAAAACT-TCATTGATGGTCAGATAAACTGGGCT
* * * *
23300035 TAAAGCTTCATTAATGATTAGATAAACTGGGCT
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCT
* * * *
23300068 TAAAATTTCATTGATGGCCAGATAAAGTGTG-T
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCT
* * * *
23300100 TTAAA-TGTCATTGATAGCCAGATAAATTGGGCT
1 TAAAACT-TCATTGATGGTCAGATAAACTGGGCT
* * *
23300133 TAAAACTTCATTAATGGCCAGATAAACTAGGCT
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCT
* * * *
23300166 TAAAGCTTCATTAATGGCCAGATAAACT-GACT
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCT
* *
23300198 TAAAATTTTATTGATGGTCAGATAAACTGGGCT
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCT
* * *
23300231 TAAAACCTCATTTAAGGTCAGATAAACTGGGCT
1 TAAAACTTCATTGATGGTCAGATAAACTGGGCT
23300264 TAAA
1 TAAA
23300268 TTTTTTAATT
Statistics
Matches: 380, Mismatches: 68, Indels: 26
0.80 0.14 0.05
Matches are distributed among these distances:
31 2 0.01
32 131 0.34
33 241 0.63
34 6 0.02
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (33 bp):
TAAAACTTCATTGATGGTCAGATAAACTGGGCT
Found at i:23299948 original size:98 final size:97
Alignment explanation
Indices: 23299795--23300267 Score: 540
Period size: 98 Copynumber: 4.8 Consensus size: 97
23299785 TTAGGGTCAA
* * * * * * *
23299795 ATAAACTGGGCTTAAATTTTATTGAAGGCCAGCTAAACTAGGCTTAAAACCTCATTTGAGGTCAG
1 ATAAACT-GGCTTAAATTTCATTGATGGTCAGATAAACTGGGCTTAAAACTTCATTTAAGGTCAG
23299860 ATAAACTGGGCTTAAAACTTCATTAATGGCCAG
65 ATAAACTGGGCTTAAAACTTCATTAATGGCCAG
* *
23299893 ATAAACTAGGCTTAAATTTCATTGATGGTAAGATAAACTGGGCTTAAAGCTTCA-TTAATGG-CT
1 ATAAACT-GGCTTAAATTTCATTGATGGTCAGATAAACTGGGCTTAAAACTTCATTTAA-GGTC-
* * *
23299956 AGATAAACTAGGCTTAAAACTTCATTGATGGCTAG
63 AGATAAACTGGGCTTAAAACTTCATTAATGGCCAG
* * * * * * *
23299991 ATAAACTAGGCTTAAATGTCATTAATGGTCAGCTAAACTAGGCTTAAAGCTTCA-TTAATGATTA
1 ATAAACT-GGCTTAAATTTCATTGATGGTCAGATAAACTGGGCTTAAAACTTCATTTAA-GGTCA
* *
23300055 GATAAACTGGGCTTAAAATTTCATTGATGGCCAG
64 GATAAACTGGGCTTAAAACTTCATTAATGGCCAG
* * * * * * *
23300089 ATAAAGTGTGTTTAAATGTCATTGATAGCCAGATAAATTGGGCTTAAAACTTCA-TTAATGGCCA
1 ATAAACTG-GCTTAAATTTCATTGATGGTCAGATAAACTGGGCTTAAAACTTCATTTAA-GGTCA
* *
23300153 GATAAACTAGGCTTAAAGCTTCATTAATGGCCAG
64 GATAAACTGGGCTTAAAACTTCATTAATGGCCAG
* * *
23300187 ATAAACTGACTTAAAATTTTATTGATGGTCAGATAAACTGGGCTTAAAACCTCATTTAAGGTCAG
1 ATAAACTGGCTT-AAATTTCATTGATGGTCAGATAAACTGGGCTTAAAACTTCATTTAAGGTCAG
23300252 ATAAACTGGGCTTAAA
65 ATAAACTGGGCTTAAA
23300268 TTTTTTAATT
Statistics
Matches: 319, Mismatches: 50, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
97 7 0.02
98 308 0.97
99 4 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (97 bp):
ATAAACTGGCTTAAATTTCATTGATGGTCAGATAAACTGGGCTTAAAACTTCATTTAAGGTCAGA
TAAACTGGGCTTAAAACTTCATTAATGGCCAG
Found at i:23301199 original size:34 final size:32
Alignment explanation
Indices: 23301136--23301199 Score: 74
Period size: 33 Copynumber: 1.9 Consensus size: 32
23301126 CCATTCATTT
*
23301136 CTTTCTTTTTTTCTTCTTTTATTGTTCCTTTC
1 CTTTCTTTTTTTCTTCTTTTATTGATCCTTTC
* * *
23301168 CTTTCATTTTTTTTTTTTTTTTTTGCATCCTT
1 CTTTC-TTTTTTTCTTCTTTTATTG-ATCCTT
23301200 CACTGAGCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
32 5 0.19
33 16 0.62
34 5 0.19
ACGTcount: A:0.05, C:0.19, G:0.03, T:0.73
Consensus pattern (32 bp):
CTTTCTTTTTTTCTTCTTTTATTGATCCTTTC
Found at i:23308738 original size:12 final size:13
Alignment explanation
Indices: 23308718--23308764 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 13
23308708 TTTCTGTATT
*
23308718 TTATATTTTAT-A
1 TTATTTTTTATAA
23308730 TTATTTTTT-TAA
1 TTATTTTTTATAA
* *
23308742 TAATTTTTAATAA
1 TTATTTTTTATAA
23308755 TTATTTTTTA
1 TTATTTTTTA
23308765 ATTTTAATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
11 1 0.04
12 16 0.57
13 11 0.39
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTATTTTTTATAA
Found at i:23309489 original size:87 final size:86
Alignment explanation
Indices: 23309127--23309495 Score: 418
Period size: 87 Copynumber: 4.2 Consensus size: 86
23309117 GGTCTTATAA
* **
23309127 AAATCATACTCGAAGGTCTTACAGAATCGACTGGGACAACACCGCAAGTTAAAAATAATGAATCG
1 AAATCATACTCGGAGGTCTTACAGAATCGACTGGGACAACACCGCAAGTCGAAAATAATGAATCG
** *
23309192 ATCGGGATAACACCGTAAATTG
66 ATCGGGATAACACCGCGAA-TC
* * * * * * * * *
23309214 AAATTATACCCAGAGGTCTTACAGAATTGACTGAGACAACATCACAAGTCGAAATTAAAGAATCG
1 AAATCATACTCGGAGGTCTTACAGAATCGACTGGGACAACACCGCAAGTCGAAAATAATGAATCG
* * *
23309279 ATCAGGATAATACCACGAATC
66 ATCGGGATAACACCGCGAATC
* * *
23309300 GAAATCATGCTCGGAGGTCTTACAGAATCGACTGGGACAATACCGTAAGTCGAAAATAATGAATC
1 -AAATCATACTCGGAGGTCTTACAGAATCGACTGGGACAACACCGCAAGTCGAAAATAATGAATC
* *
23309365 AATTGGGATAACACCGCGAATC
65 GATCGGGATAACACCGCGAATC
* *
23309387 AAAATCAT-GTCTGGA-GTCTTACAGAAATCGACTGGGACAACACCGCAAGTCGAGAATAATGAA
1 -AAATCATACTC-GGAGGTCTTACAG-AATCGACTGGGACAACACCGCAAGTCGAAAATAATGAA
*
23309450 TCGATTGGGATAACACCGCGAATC
63 TCGATCGGGATAACACCGCGAATC
* *
23309474 AAATTTATACTTGGAGGTCTTA
1 AAA-TCATACTCGGAGGTCTTA
23309496 GAAATCAAGA
Statistics
Matches: 232, Mismatches: 44, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
86 15 0.06
87 210 0.91
88 7 0.03
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (86 bp):
AAATCATACTCGGAGGTCTTACAGAATCGACTGGGACAACACCGCAAGTCGAAAATAATGAATCG
ATCGGGATAACACCGCGAATC
Found at i:23310150 original size:33 final size:33
Alignment explanation
Indices: 23310110--23310547 Score: 369
Period size: 33 Copynumber: 13.5 Consensus size: 33
23310100 GAAAGTCATC
* *
23310110 TAAACTGGGCTTAAAACCTGATTTGA-GGTCAGA
1 TAAACTGGGCTTAAAACTTCA-TTGATGGTCAGA
*
23310143 TAAACTGGGCTT-AAATTTCATTGATGG-CAAGA
1 TAAACTGGGCTTAAAACTTCATTGATGGTC-AGA
* *
23310175 TAAACTGGGCTTAAAGCTTCATTAATGGTCAGA
1 TAAACTGGGCTTAAAACTTCATTGATGGTCAGA
* *
23310208 TAAACTAGG-TTGAAAACTTCATTGATGGCCAGA
1 TAAACTGGGCTT-AAAACTTCATTGATGGTCAGA
* *
23310241 TAAACTGGGCTTAAAACTTCGTTGATGGCCAGA
1 TAAACTGGGCTTAAAACTTCATTGATGGTCAGA
* * ** *
23310274 TAAATTAGGCTTAAATGTT-ATTGATGGTCAAA
1 TAAACTGGGCTTAAAACTTCATTGATGGTCAGA
* * * **
23310306 TAAACTAGGCTTAAAGCTTCATTAATGACCAGA
1 TAAACTGGGCTTAAAACTTCATTGATGGTCAGA
* * * * * *
23310339 TAAA-TTGG-AT-AAGCTTCATTAAGGGCCAGA
1 TAAACTGGGCTTAAAACTTCATTGATGGTCAGA
* * * * *
23310369 TAAAC-CGGCTTAAAATTTCATTAATGGCCAAA
1 TAAACTGGGCTTAAAACTTCATTGATGGTCAGA
* *
23310401 TAAACTGGGCTT-AAA-TGTCATTGATAGCCAGA
1 TAAACTGGGCTTAAAACT-TCATTGATGGTCAGA
* * * *
23310433 TAAACTGAGCTTAAAGCTTTATTAATGGTCAGA
1 TAAACTGGGCTTAAAACTTCATTGATGGTCAGA
* * * *
23310466 TAAATTGGGCTTAAAGCTTCATTAATGGCCAGA
1 TAAACTGGGCTTAAAACTTCATTGATGGTCAGA
*
23310499 TAAACTGGGCTTAAAACCTCATTTGA-GGTCAGA
1 TAAACTGGGCTTAAAACTTCA-TTGATGGTCAGA
*
23310532 TAAGCTGGGCTTAAAA
1 TAAACTGGGCTTAAAA
23310548 ATATTTTTTT
Statistics
Matches: 334, Mismatches: 56, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
30 24 0.07
31 8 0.02
32 100 0.30
33 195 0.58
34 7 0.02
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (33 bp):
TAAACTGGGCTTAAAACTTCATTGATGGTCAGA
Found at i:23310415 original size:160 final size:160
Alignment explanation
Indices: 23310067--23310502 Score: 420
Period size: 160 Copynumber: 2.7 Consensus size: 160
23310057 AAAATTTCTT
* * * * * ** * * *
23310067 TTAA-GGCCAAATAAACTAGGCTTAAATTTTATTGAAAGTCATCTAAACTGGGCTTAAAACCTGA
1 TTAATGGCCAAATAAACTGGGCTTAAATGTCATTGATAGCCAGATAAACTGAGCTT-AAAGCTTA
* * * * * * * * *
23310131 TTTGA-GGTCAGATAAACTGGGCTTAAA-TTTCATTGATGGCAAGATAAACTGGGCTTAAAGCTT
65 -TTAATGGTCAAATAAACTAGGCTTAAAGCTTCATTAATGACCAGATAAA-TTGG-AT-AAGCTT
* *
23310194 CATTAATGGTCAGATAAACTAGGTTGAAAACTTCA
126 CATTAAGGGCCAGATAAACTAGGTTGAAAACTTCA
* * * * *
23310229 TTGATGGCCAGATAAACTGGGCTTAAAACT-TCGTTGATGGCCAGATAAA-TTAGGCTTAAATG-
1 TTAATGGCCAAATAAACTGGGCTT-AAA-TGTCATTGATAGCCAGATAAACTGA-GCTTAAA-GC
*
23310291 TTATTGATGGTCAAATAAACTAGGCTTAAAGCTTCATTAATGACCAGATAAATTGGATAAGCTTC
62 TTATTAATGGTCAAATAAACTAGGCTTAAAGCTTCATTAATGACCAGATAAATTGGATAAGCTTC
* *
23310356 ATTAAGGGCCAGATAAAC-CGGCTT-AAAATTTCA
127 ATTAAGGGCCAGATAAACTAGG-TTGAAAACTTCA
23310389 TTAATGGCCAAATAAACTGGGCTTAAATGTCATTGATAGCCAGATAAACTGAGCTTAAAGCTTTA
1 TTAATGGCCAAATAAACTGGGCTTAAATGTCATTGATAGCCAGATAAACTGAGCTTAAAGC-TTA
* * * *
23310454 TTAATGGTCAGATAAATTGGGCTTAAAGCTTCATTAATGGCCAGATAAA
65 TTAATGGTCAAATAAACTAGGCTTAAAGCTTCATTAATGACCAGATAAA
23310503 CTGGGCTTAA
Statistics
Matches: 226, Mismatches: 36, Indels: 26
0.78 0.12 0.09
Matches are distributed among these distances:
158 2 0.01
159 27 0.12
160 81 0.36
161 25 0.11
162 8 0.04
163 46 0.20
164 36 0.16
165 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (160 bp):
TTAATGGCCAAATAAACTGGGCTTAAATGTCATTGATAGCCAGATAAACTGAGCTTAAAGCTTAT
TAATGGTCAAATAAACTAGGCTTAAAGCTTCATTAATGACCAGATAAATTGGATAAGCTTCATTA
AGGGCCAGATAAACTAGGTTGAAAACTTCA
Found at i:23311049 original size:14 final size:13
Alignment explanation
Indices: 23311030--23311068 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
23311020 CCTAGAGTCG
23311030 TTTTTATTTCTATT
1 TTTTTATTT-TATT
23311044 TTTTTATTTTATT
1 TTTTTATTTTATT
*
23311057 TTATTTTTTTTA
1 TT-TTTATTTTA
23311069 CACACTATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 6 0.26
14 17 0.74
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTATTTTATT
Found at i:23311068 original size:19 final size:19
Alignment explanation
Indices: 23311031--23311066 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
23311021 CTAGAGTCGT
23311031 TTTTATTTCTATTTTTTTA
1 TTTTATTTCTATTTTTTTA
23311050 TTTTATTT-TATTTTTTT
1 TTTTATTTCTATTTTTTT
23311067 TACACACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTTATTTCTATTTTTTTA
Found at i:23317357 original size:26 final size:25
Alignment explanation
Indices: 23317312--23317361 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
23317302 ATATTTTGAA
*
23317312 AAATTAAAATAAAGAGAATTAAATT
1 AAATTAAAATAAAGACAATTAAATT
23317337 AAATATAAAATAAA-ACCAATTAAAT
1 AAAT-TAAAATAAAGA-CAATTAAAT
23317362 CCAATAGCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (25 bp):
AAATTAAAATAAAGACAATTAAATT
Found at i:23318901 original size:3 final size:3
Alignment explanation
Indices: 23318886--23318979 Score: 59
Period size: 3 Copynumber: 30.3 Consensus size: 3
23318876 AATGATAAAA
* ** * *
23318886 ATT ATT TTT ATT ATT ATT ATT ATT ATT -TT GAGC ATT TTT AAT ATAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT AT-T
*
23318932 ATTT ATTT ATAT CTT ATT -TT -TT CATT ATT ATT ATT ATT ATT ATT ATT
1 A-TT A-TT AT-T ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT
23318979 A
1 A
23318980 AACAATTTTA
Statistics
Matches: 72, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
2 6 0.08
3 53 0.74
4 12 0.17
5 1 0.01
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:23320039 original size:13 final size:13
Alignment explanation
Indices: 23320017--23320056 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
23320007 AGTTCTCTTT
*
23320017 TTTTTGTTTTTTA
1 TTTTTATTTTTTA
23320030 TTTTTATTTTTTA
1 TTTTTATTTTTTA
23320043 TTTTATATTATTTT
1 TTTT-TATT-TTTT
23320057 TTAATAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 16 0.67
14 4 0.17
15 4 0.17
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:23320586 original size:21 final size:21
Alignment explanation
Indices: 23320557--23320621 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
23320547 TTATATATAA
*
23320557 AAATATATATTTTGTTTTATT
1 AAATTTATATTTTGTTTTATT
*
23320578 AAATTTATATATTAT-TTTTGTT
1 AAATTTATAT-TT-TGTTTTATT
* *
23320600 AAA-TTATAATTTG-TATATT
1 AAATTTATATTTTGTTTTATT
23320619 AAA
1 AAA
23320622 ATTTTAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
19 8 0.22
20 2 0.06
21 14 0.39
22 11 0.31
23 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
AAATTTATATTTTGTTTTATT
Found at i:23320586 original size:23 final size:21
Alignment explanation
Indices: 23320560--23320611 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
23320550 TATATAAAAA
23320560 TATATATTTTGTTTTATTAAATT
1 TATATATTTT-TTTTATTAAA-T
* *
23320583 TATATATTATTTTTGTTAAAT
1 TATATATTTTTTTTATTAAAT
23320604 TATA-ATTT
1 TATATATTT
23320612 GTATATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 3 0.12
21 5 0.19
22 9 0.35
23 9 0.35
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (21 bp):
TATATATTTTTTTTATTAAAT
Found at i:23320601 original size:22 final size:23
Alignment explanation
Indices: 23320540--23320604 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
23320530 TTATAAAAAT
* **
23320540 TATTATGTTATATATAAAAATATA
1 TATTATGTTTTAT-TAAATTTATA
*
23320564 TATTTTGTTTTATTAAATTTATA
1 TATTATGTTTTATTAAATTTATA
*
23320587 TATTAT-TTTTGTTAAATT
1 TATTATGTTTTATTAAATT
23320605 ATAATTTGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 11 0.31
23 13 0.37
24 11 0.31
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TATTATGTTTTATTAAATTTATA
Found at i:23320618 original size:28 final size:27
Alignment explanation
Indices: 23320559--23320619 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
23320549 ATATATAAAA
**
23320559 ATATA-TA-TTTTGTTTTATTAAATTT
1 ATATATTATTTTTGTTAAATTAAATTT
23320584 ATATATTATTTTTGTTAAATTATAATTT
1 ATATATTATTTTTGTTAAATTA-AATTT
*
23320612 GTATATTA
1 ATATATTA
23320620 AAATTTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 5 0.17
26 2 0.07
27 11 0.37
28 12 0.40
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (27 bp):
ATATATTATTTTTGTTAAATTAAATTT
Found at i:23332193 original size:2 final size:2
Alignment explanation
Indices: 23332186--23332224 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
23332176 CCAATACTAC
23332186 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
23332225 TGGCTCAGGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:23332694 original size:22 final size:22
Alignment explanation
Indices: 23332669--23332727 Score: 100
Period size: 22 Copynumber: 2.7 Consensus size: 22
23332659 TCAATAATAA
23332669 TCGAATCGAATTCGAATTTTTT
1 TCGAATCGAATTCGAATTTTTT
23332691 TCGAATCGAATTCGAATTTTTT
1 TCGAATCGAATTCGAATTTTTT
**
23332713 TTTAATCGAATTCGA
1 TCGAATCGAATTCGA
23332728 GTAATTTGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.44
Consensus pattern (22 bp):
TCGAATCGAATTCGAATTTTTT
Found at i:23333103 original size:32 final size:31
Alignment explanation
Indices: 23333046--23333120 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 31
23333036 ATAGGGAGAT
*
23333046 TAAAATTATTAATAAAAAATATATTTAAATA-
1 TAAAA-TAATAATAAAAAATATATTTAAATAC
* **
23333077 TAAATATAATAATAAAAAATTTTATTTTTATAC
1 TAAA-ATAATAATAAAAAA-TATATTTAAATAC
23333110 TAAAATAATAA
1 TAAAATAATAA
23333121 ATTGTTCTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
31 16 0.43
32 17 0.46
33 4 0.11
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (31 bp):
TAAAATAATAATAAAAAATATATTTAAATAC
Found at i:23334010 original size:4 final size:4
Alignment explanation
Indices: 23333974--23334178 Score: 125
Period size: 4 Copynumber: 52.8 Consensus size: 4
23333964 AAATGAGTAG
*
23333974 ATTT ATTT -TAT ATTT -TTAT ATTTT ATTT A--T ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATT-T A-TTT ATTT ATTT ATTT ATTT ATTT ATTT
* *
23334020 ATATT -TTT -TTT -TTT TTTGT ATCTT ATGT ATTT ATTT ATTT A-TT A-TT
1 AT-TT ATTT ATTT ATTT ATT-T AT-TT ATTT ATTT ATTT ATTT ATTT ATTT
* * *
23334066 A-TT ATTT ATTAAT ATTT ATTT ATTTT ATTT ATTT ATTT ATTT ATCT GTTA
1 ATTT ATTT ATT--T ATTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT
* * * * *
23334116 ATAT ATAT ATTT A-TT ATTT ATCT ATTT ATAT A-TT ATTTT ATCT A-TT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT
23334162 A-TT A-TT ATTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATT
23334179 AATATTTTTA
Statistics
Matches: 164, Mismatches: 19, Indels: 36
0.75 0.09 0.16
Matches are distributed among these distances:
2 2 0.01
3 34 0.21
4 105 0.64
5 16 0.10
6 7 0.04
ACGTcount: A:0.27, C:0.02, G:0.01, T:0.70
Consensus pattern (4 bp):
ATTT
Found at i:23334051 original size:44 final size:44
Alignment explanation
Indices: 23333974--23334178 Score: 100
Period size: 43 Copynumber: 4.9 Consensus size: 44
23333964 AAATGAGTAG
*
23333974 ATTTATTT-TA-TATTT-TT-ATATTTTATTTATATTTATTTATTT
1 ATTTATTTATATTATTTATTAATA-TTTATTTAT-TGTATTTATTT
* * * ** *
23334016 ATTTATATT-TTTTTTTTTTTTGTATCTTATGTATT-TATTTATTT
1 ATTTAT-TTATATTATTTATTAATAT-TTATTTATTGTATTTATTT
*
23334060 A-TTA--T-TATTATTTATTAATATTTATTTATTTTATTTATTT
1 ATTTATTTATATTATTTATTAATATTTATTTATTGTATTTATTT
* * * *
23334100 ATTTATTTAT-CTGTTAATATATATATTTA-TTATT-TATCTATTT
1 ATTTATTTATATTATTTAT-TA-ATATTTATTTATTGTATTTATTT
* * * *
23334143 ATATA-TTATTTTATCTATTATTA-TTATTTATT-TATT
1 ATTTATTTATATTATTTATTAATATTTATTTATTGTATT
23334179 AATATTTTTA
Statistics
Matches: 128, Mismatches: 21, Indels: 29
0.72 0.12 0.16
Matches are distributed among these distances:
39 8 0.06
40 25 0.20
41 13 0.10
42 12 0.09
43 28 0.22
44 22 0.17
45 11 0.09
46 9 0.07
ACGTcount: A:0.27, C:0.02, G:0.01, T:0.70
Consensus pattern (44 bp):
ATTTATTTATATTATTTATTAATATTTATTTATTGTATTTATTT
Found at i:23334193 original size:20 final size:20
Alignment explanation
Indices: 23334050--23334227 Score: 61
Period size: 20 Copynumber: 8.9 Consensus size: 20
23334040 TCTTATGTAT
*
23334050 TTATTTATT--TATTATT-A
1 TTATTTATTAATATTTTTAA
*
23334067 TTATTTATTAATA--TTTAT
1 TTATTTATTAATATTTTTAA
* *
23334085 TTATTTTATTTAT-TTATTTAT
1 TTA-TTTATTAATATT-TTTAA
* * *
23334106 TTATCTGTTAATATATATATTTA
1 TTATTTATTAATAT-T-T-TTAA
* *
23334129 TTATTTA-T-CTATTTATATA
1 TTATTTATTAATATTTTTA-A
* * *
23334148 TTATTTTATCTATTATTATTAT
1 TTA-TTTAT-TAATATTTTTAA
23334170 TTATTTATTAATATTTTTAA
1 TTATTTATTAATATTTTTAA
* *
23334190 TTATCTAATT-ATTTTTTTAA
1 TTAT-TTATTAATATTTTTAA
* *
23334210 TTATCT-TTAACATTTTTA
1 TTATTTATTAATATTTTTA
23334228 TTTCTTTTTA
Statistics
Matches: 118, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
17 11 0.09
18 6 0.05
19 22 0.19
20 37 0.31
21 21 0.18
22 8 0.07
23 13 0.11
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (20 bp):
TTATTTATTAATATTTTTAA
Found at i:23334201 original size:35 final size:35
Alignment explanation
Indices: 23334060--23334202 Score: 99
Period size: 35 Copynumber: 4.2 Consensus size: 35
23334050 TTATTTATTT
*
23334060 ATTATTA-TTATTTATTAATA--TTTATTTAT-T-
1 ATTATTATTTATTTATTAATATTTTTAATTATCTA
* *
23334090 -TTATTTATTTATTTATT--TATCTGTTAATATATATA
1 ATTA-TTATTTATTTATTAATAT-TTTTAAT-TATCTA
* * *
23334125 TTTATTATTTATCTATTTATATATTATT--TTATCTA
1 ATTATTATTTATTTA-TTA-ATATTTTTAATTATCTA
23334160 TTATTATTATTTATTTATTAATATTTTTAATTATCTA
1 --ATTATTATTTATTTATTAATATTTTTAATTATCTA
23334197 ATTATT
1 ATTATT
23334203 TTTTTAATTA
Statistics
Matches: 88, Mismatches: 8, Indels: 29
0.70 0.06 0.23
Matches are distributed among these distances:
29 5 0.06
30 3 0.03
31 9 0.10
32 4 0.05
33 3 0.03
34 1 0.01
35 28 0.32
36 9 0.10
37 20 0.23
38 3 0.03
39 3 0.03
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (35 bp):
ATTATTATTTATTTATTAATATTTTTAATTATCTA
Found at i:23335103 original size:9 final size:8
Alignment explanation
Indices: 23335083--23335133 Score: 50
Period size: 9 Copynumber: 6.0 Consensus size: 8
23335073 AATTGTTTAG
23335083 TATTTTTT
1 TATTTTTT
23335091 TATTTTCTT
1 TATTTT-TT
23335100 TATTTTTAT
1 TATTTTT-T
*
23335109 T-TTATTT
1 TATTTTTT
23335116 TATTTTTGT
1 TATTTTT-T
23335125 TATTATTTT
1 TATT-TTTT
23335134 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
7 2 0.06
8 15 0.42
9 16 0.44
10 3 0.08
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (8 bp):
TATTTTTT
Found at i:23335107 original size:15 final size:16
Alignment explanation
Indices: 23335087--23335122 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
23335077 GTTTAGTATT
23335087 TTTTTATTTT-CTTTA
1 TTTTTATTTTACTTTA
*
23335102 TTTTTATTTTATTTTA
1 TTTTTATTTTACTTTA
23335118 TTTTT
1 TTTTT
23335123 GTTATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTATTTTACTTTA
Found at i:23335297 original size:59 final size:60
Alignment explanation
Indices: 23335149--23335422 Score: 341
Period size: 59 Copynumber: 4.7 Consensus size: 60
23335139 AATAAATTCA
* *
23335149 AAAAATAATATTTTTAAGG-AAAAGTTAAAAGTATCAATTTT-TCTTGAAAATAAGTCTTT-
1 AAAAA-AATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCT-TTGAAAATAAGTCTTTC
* * *
23335208 AAAAAAATATTTTTGA-GAAAAAGTTGAAAGTATTAGTTTTCTTTGAAAATAAGTTTTTC
1 AAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAGTCTTTC
* *
23335267 AAAAAAATATTTTTGAGGAAAAA-TTGAAAGTATCAATTTTCCTTGAAAATAAGCCTTTC
1 AAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAGTCTTTC
* * * **
23335326 TAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCTTCGAAATTAA-AATTTC
1 AAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAGTCTTTC
* *
23335384 TAAAAAATA-TTTTG-GGAAAAAGTTGAAAGCATCAATTTT
1 AAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTT
23335423 TCTTGTACAA
Statistics
Matches: 193, Mismatches: 17, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
57 30 0.16
58 64 0.33
59 93 0.48
60 6 0.03
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.37
Consensus pattern (60 bp):
AAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAGTCTTTC
Found at i:23335304 original size:117 final size:117
Alignment explanation
Indices: 23335149--23335427 Score: 375
Period size: 117 Copynumber: 2.4 Consensus size: 117
23335139 AATAAATTCA
* * * *
23335149 AAAAATAATATTTTTAAGGAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAGTCTTT-AAAAA
1 AAAAA-AATATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTGAAAATAAGCCTTTCAAAAA
* * * **
23335213 AATATTTTTGAGAAAAAGTTGAAAGTATTAGTTTTCTTTGAAAATAAGTTTTTC
65 AATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTCGAAAATAA-AATTTC
* *
23335267 AAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTGAAAATAAGCCTTTCTAAAAA
1 AAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTGAAAATAAGCCTTTCAAAAAA
* *
23335332 ATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCTTCGAAATTAAAATTTC
66 ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTCGAAAATAAAATTTC
* *
23335384 TAAAAAATA-TTTTG-GGAAAAAGTTGAAAGCATCAATTTTTCTTG
1 AAAAAAATATTTTTGAGGAAAAA-TTGAAAGTATCAATTTTTCTTG
23335428 TACAAAAGCA
Statistics
Matches: 143, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
115 7 0.05
116 25 0.17
117 60 0.42
118 51 0.36
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (117 bp):
AAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTGAAAATAAGCCTTTCAAAAAA
ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTCGAAAATAAAATTTC
Found at i:23338132 original size:21 final size:22
Alignment explanation
Indices: 23338095--23338144 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
23338085 GAGCTGACTG
* *
23338095 AAAAGAATGTAAGATT-GAAGC
1 AAAAGTATGTAAGATTGGAAGA
23338116 AAAAGTATGCTAA-ATTGGAAGA
1 AAAAGTATG-TAAGATTGGAAGA
23338138 AAAAGTA
1 AAAAGTA
23338145 CCTAAGTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.54, C:0.04, G:0.22, T:0.20
Consensus pattern (22 bp):
AAAAGTATGTAAGATTGGAAGA
Found at i:23338605 original size:15 final size:15
Alignment explanation
Indices: 23338585--23338615 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23338575 TTTACATACA
*
23338585 TGCATTCTCATTCAT
1 TGCATTCTCACTCAT
23338600 TGCATTCTCACTCAT
1 TGCATTCTCACTCAT
23338615 T
1 T
23338616 ACACTTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.29, G:0.06, T:0.45
Consensus pattern (15 bp):
TGCATTCTCACTCAT
Found at i:23345727 original size:24 final size:24
Alignment explanation
Indices: 23345695--23345752 Score: 84
Period size: 23 Copynumber: 2.5 Consensus size: 24
23345685 CTATGTTTGA
*
23345695 AAAAAAAGAAGAGAAAAAT-GAAAT
1 AAAAAAAGAA-AGAAAAATAGAAAG
23345719 AAAAAAAGAAAGAAAAATAGAAAG
1 AAAAAAAGAAAGAAAAATAGAAAG
23345743 -AAAAAAGAAA
1 AAAAAAAGAAA
23345753 CAAGAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
23 18 0.56
24 14 0.44
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (24 bp):
AAAAAAAGAAAGAAAAATAGAAAG
Found at i:23345760 original size:12 final size:11
Alignment explanation
Indices: 23345696--23345752 Score: 69
Period size: 12 Copynumber: 4.9 Consensus size: 11
23345686 TATGTTTGAA
23345696 AAAAAAGAAGAG
1 AAAAAAGAA-AG
* *
23345708 AAAAATGAAATA
1 AAAAAAGAAA-G
23345720 AAAAAAGAAAG
1 AAAAAAGAAAG
23345731 AAAAATAGAAAG
1 AAAAA-AGAAAG
23345743 AAAAAAGAAA
1 AAAAAAGAAA
23345753 CAAGAAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
11 11 0.28
12 28 0.72
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:23345765 original size:30 final size:30
Alignment explanation
Indices: 23345724--23345782 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
23345714 GAAATAAAAA
*
23345724 AAGAAAGAAAAA-TAGAAAGAAAAAAGAAAC
1 AAGAAAAAAAAAGT-GAAAGAAAAAAGAAAC
* *
23345754 AAGAAAAAAAAAGTGAATGAAAAAGGAAA
1 AAGAAAAAAAAAGTGAAAGAAAAAAGAAA
23345783 ACTCAAGGCG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.75, C:0.02, G:0.19, T:0.05
Consensus pattern (30 bp):
AAGAAAAAAAAAGTGAAAGAAAAAAGAAAC
Found at i:23346866 original size:42 final size:42
Alignment explanation
Indices: 23346788--23346931 Score: 150
Period size: 42 Copynumber: 3.5 Consensus size: 42
23346778 AAGTTGTAAT
* *
23346788 GCCTCTGTTTAGAGGAGC--CATTTATTTTCAATGTCGTTAA
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTCGTTAA
* *
23346828 GCCTCTGTTTAGAGGAGCTTTATTTATTTTTAAAGTCGTTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTCGTTAA
* * * * * *
23346870 GCCTCTGATTAGATGAGGTTTATGT-TTTTCAAAGTCATTGA
1 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTCGTTAA
** *
23346911 GCCTCTACTTAAAGGAGCTTT
1 GCCTCTGTTTAGAGGAGCTTT
23346932 GATCAGAATT
Statistics
Matches: 87, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
40 18 0.21
41 30 0.34
42 39 0.45
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (42 bp):
GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTCGTTAA
Found at i:23347142 original size:4 final size:4
Alignment explanation
Indices: 23347111--23347397 Score: 131
Period size: 4 Copynumber: 72.5 Consensus size: 4
23347101 GTAGGCCCAT
23347111 TTTA TTT- TTTA -TT- TTTA TTT- TATTA TTTA TTTA TTTA TTT- TTT-
1 TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA
* ** * * *
23347154 TGTA TCTTA CGTA TTTA TTTA TTTA TTTA TATTT TTTC TTTT TTGTA TCTTA
1 TTTA T-TTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TT-TA T-TTA
** *
23347206 CGTA TTTA TTTA TTTA -TTA -TTA -TTA TTTA TTAATA TATA TTTA TTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TTTA -TTTA
* * * *
23347254 TTTA TTTA TTTA TTTA TCTG TTAATA TATA TTTA -TTA TTTA TCTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA
* *
23347303 TATTA TATATA TGTA TTTA -TTA -TTA TTTA TCTA -TTA -TTA -TTA -TTA
1 T-TTA T-T-TA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * * * *
23347348 TTTA TCTA TTAA TATT- TTTA TTTA TCTA ATTA TTTT TTTA ATTA TCTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
23347396 TT
1 TT
23347398 AACATTTTTA
Statistics
Matches: 218, Mismatches: 42, Indels: 46
0.71 0.14 0.15
Matches are distributed among these distances:
3 44 0.20
4 144 0.66
5 21 0.10
6 9 0.04
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:23347196 original size:43 final size:43
Alignment explanation
Indices: 23347124--23347270 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 43
23347114 ATTTTTTATT
23347124 TTTATTT-TATTATTTATTTATTTATTTTTTTGTATCTTACGTA
1 TTTATTTAT-TTATTTATTTATTTATTTTTTTGTATCTTACGTA
23347167 TTTATTTATTTATTTATATT-TTT-TCTTTTTTGTATCTTACGTA
1 TTTATTTATTTATTTAT-TTATTTAT-TTTTTTGTATCTTACGTA
** * *
23347210 TTTATTTATTTA-TTATTATTATTTATTAATATATAT-TTA--T-
1 TTTATTTATTTATTTA-T-TTATTTATTTTTTTGTATCTTACGTA
23347250 TTTATTTATTTATTTATTTAT
1 TTTATTTATTTATTTATTTAT
23347271 CTGTTAATAT
Statistics
Matches: 93, Mismatches: 4, Indels: 18
0.81 0.03 0.16
Matches are distributed among these distances:
39 4 0.04
40 13 0.14
41 4 0.04
42 4 0.04
43 55 0.59
44 12 0.13
45 1 0.01
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (43 bp):
TTTATTTATTTATTTATTTATTTATTTTTTTGTATCTTACGTA
Found at i:23347233 original size:17 final size:17
Alignment explanation
Indices: 23347208--23347398 Score: 123
Period size: 17 Copynumber: 11.1 Consensus size: 17
23347198 GTATCTTACG
23347208 TATTTATTTATTTATTAT
1 TATTTATTTA-TTATTAT
*
23347226 TA-TTATTTATTAATAT
1 TATTTATTTATTATTAT
23347242 ATATTTA-TT-TTATTTATT
1 -TATTTATTTATTA-TTA-T
* *
23347260 TATTTATTTATCTGTTAA
1 TATTTATTTAT-TATTAT
*
23347278 TATATATTTATTATTTAT
1 TATTTATTTATTA-TTAT
23347296 CTATTTA--TATTA-TAT
1 -TATTTATTTATTATTAT
*
23347311 ATATGTATTTATTATTATT
1 -TATTTATTTATTATTA-T
*
23347330 TATCTA-TTATTATTAT
1 TATTTATTTATTATTAT
* *
23347346 TATTTATCTATTAATAT
1 TATTTATTTATTATTAT
23347363 T-TTTATTTATCTAATTAT
1 TATTTATTTAT-T-ATTAT
*
23347381 T-TTT-TTAATTATCTAT
1 TATTTATTTATTAT-TAT
23347397 TA
1 TA
23347399 ACATTTTTAT
Statistics
Matches: 138, Mismatches: 17, Indels: 37
0.72 0.09 0.19
Matches are distributed among these distances:
15 10 0.07
16 28 0.20
17 53 0.38
18 36 0.26
19 10 0.07
20 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (17 bp):
TATTTATTTATTATTAT
Found at i:23347288 original size:34 final size:34
Alignment explanation
Indices: 23347212--23347357 Score: 123
Period size: 30 Copynumber: 4.5 Consensus size: 34
23347202 CTTACGTATT
* *
23347212 TATTTATTTA-TTATTATTATTTAT-TAATATATATT
1 TATTTATTTATTTA-T-TTATTTATCTATTA-ATATA
*
23347247 TATTTTATTTATTTATTTATTTATCTGTTAATATA
1 TA-TTTATTTATTTATTTATTTATCTATTAATATA
*
23347282 TATTTA-TTATTTATCTATTTA--TATT-ATATA
1 TATTTATTTATTTATTTATTTATCTATTAATATA
* *
23347312 TATGTATTTA-TTA-TTATTTATCTATTATTAT-
1 TATTTATTTATTTATTTATTTATCTATTAATATA
*
23347343 TA-TTATTTATCTATT
1 TATTTATTTATTTATT
23347358 AATATTTTTA
Statistics
Matches: 92, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
29 6 0.07
30 19 0.21
31 14 0.15
32 4 0.04
33 14 0.15
34 4 0.04
35 16 0.17
36 12 0.13
37 3 0.03
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (34 bp):
TATTTATTTATTTATTTATTTATCTATTAATATA
Found at i:23347347 original size:40 final size:38
Alignment explanation
Indices: 23347215--23347398 Score: 127
Period size: 37 Copynumber: 4.9 Consensus size: 38
23347205 ACGTATTTAT
*
23347215 TTATTTAT-TATTATTAT-TTATTAATATATATT-TATT-
1 TTATTTATCTATTATTATATTATT--TATCTATTATATTA
* * * *
23347251 TTATTTATTTATTTATT-TATCTGTTAATATA-TAT-TTA
1 TTATTTATCTA-TTATTATAT-TATTTATCTATTATATTA
*
23347288 TTATTTATCTA-T-TTATATTATATATATGTATT-TATTA
1 TTATTTATCTATTATTATATTAT-T-TATCTATTATATTA
*
23347325 TTATTTATCTATTATTATTATTATTTATCTATTAATATTT
1 TTATTTATCTATTATTA-TATTATTTATCTATT-ATATTA
* * *
23347365 TTATTTATCTAATTATTTTTTTAATTATCTATTA
1 TTATTTATCT-ATTATTATATTATTTATCTATTA
23347399 ACATTTTTAT
Statistics
Matches: 120, Mismatches: 11, Indels: 31
0.74 0.07 0.19
Matches are distributed among these distances:
34 4 0.03
35 5 0.04
36 16 0.13
37 34 0.28
38 14 0.12
39 8 0.07
40 33 0.28
41 6 0.05
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (38 bp):
TTATTTATCTATTATTATATTATTTATCTATTATATTA
Found at i:23347425 original size:40 final size:40
Alignment explanation
Indices: 23347325--23347410 Score: 129
Period size: 40 Copynumber: 2.1 Consensus size: 40
23347315 GTATTTATTA
* * *
23347325 TTATTTATCT-ATTATTATTATTATTTATCTATTAATATTT
1 TTATTTATCTAATTATT-TTTTTAATTATCTATTAACATTT
23347365 TTATTTATCTAATTATTTTTTTAATTATCTATTAACATTT
1 TTATTTATCTAATTATTTTTTTAATTATCTATTAACATTT
23347405 TTATTT
1 TTATTT
23347411 GATTTGATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
40 36 0.86
41 6 0.14
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (40 bp):
TTATTTATCTAATTATTTTTTTAATTATCTATTAACATTT
Found at i:23347694 original size:19 final size:20
Alignment explanation
Indices: 23347670--23347707 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23347660 GGTCAGAAGC
23347670 AATTTT-AAGATTTTTTTTA
1 AATTTTGAAGATTTTTTTTA
*
23347689 AATTTTGACGATTTTTTTT
1 AATTTTGAAGATTTTTTTT
23347708 TTTGGAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.26, C:0.03, G:0.08, T:0.63
Consensus pattern (20 bp):
AATTTTGAAGATTTTTTTTA
Found at i:23347954 original size:10 final size:10
Alignment explanation
Indices: 23347934--23347974 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
23347924 TCATCTACTT
23347934 AGAGA-GAAA
1 AGAGAGGAAA
23347943 AGAGAGGAAA
1 AGAGAGGAAA
23347953 AGA-AGGGAAA
1 AGAGA-GGAAA
23347963 AGAGAGAGAAA
1 AGAGAG-GAAA
23347974 A
1 A
23347975 AGATCGGTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 6 0.21
10 16 0.57
11 6 0.21
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (10 bp):
AGAGAGGAAA
Found at i:23348397 original size:58 final size:57
Alignment explanation
Indices: 23348326--23348666 Score: 393
Period size: 58 Copynumber: 5.8 Consensus size: 57
23348316 ATAAATTCAA
* *
23348326 AAAAAAATATTTTTAAGAAAAAATTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTC
1 AAAAAAATATTTTTGAG-AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTC
*
23348384 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTTTGGAAATAAGTTTTTC
1 AAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAAG-TTTTC
*
23348443 AAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTT-TTCAAAATTAAAG-TTTC
1 AAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTTCTTGAAAA-T-AAGTTTTC
* * *
23348500 TAAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCCTTTC
1 AAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAG-TTTTC
* * *
23348559 TAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAG-TTTC
1 AAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTC
** *
23348615 ATAAAAGTTTTTTTTTCTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTG
1 A-AAAA-----AATAT-TTTTGAG-AAAAGTTGAAAGTATCAATTTTTCTTG
23348667 TACAAAAGCA
Statistics
Matches: 248, Mismatches: 17, Indels: 30
0.84 0.06 0.10
Matches are distributed among these distances:
56 4 0.02
57 35 0.14
58 121 0.49
59 54 0.22
62 2 0.01
63 7 0.03
64 25 0.10
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (57 bp):
AAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTC
Found at i:23348483 original size:28 final size:28
Alignment explanation
Indices: 23348393--23348484 Score: 66
Period size: 30 Copynumber: 3.2 Consensus size: 28
23348383 CAAAAAAATA
23348393 TTTTTGAGGAAAAGTTGAAAGTATCAATT
1 TTTTTGA-GAAAAGTTGAAAGTATCAATT
* * *
23348422 TTCTTTG-GAAATAAGTTTTTCAAA--A-AAATA
1 TT-TTTGAG-AA-AAG---TTGAAAGTATCAATT
23348452 TTTTTGAGAAAAGTTGAAAGTATCAATT
1 TTTTTGAGAAAAGTTGAAAGTATCAATT
23348480 TTTTT
1 TTTTT
23348485 CAAAATTAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 21
0.64 0.08 0.28
Matches are distributed among these distances:
25 5 0.11
27 1 0.02
28 12 0.26
29 10 0.21
30 13 0.28
31 1 0.02
33 5 0.11
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.42
Consensus pattern (28 bp):
TTTTTGAGAAAAGTTGAAAGTATCAATT
Found at i:23358084 original size:2 final size:2
Alignment explanation
Indices: 23358077--23358105 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
23358067 ATCAATAATC
23358077 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23358106 TACAACATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:23358893 original size:233 final size:230
Alignment explanation
Indices: 23358321--23359002 Score: 917
Period size: 231 Copynumber: 2.9 Consensus size: 230
23358311 TTTTTTGTCA
* * * *
23358321 TGTACATCACCTCATCTCAATTTAAAATCAATTTTAAAGTAATTTATCTTTTTCAATTTATCTAA
1 TGTACATCACCTTATCTCAATTTAAAATTAATTTTAAAATAATTTATCTTTTTCAATTTATCTAC
* *
23358386 AATTAATATGAGAATTTAAATTTATCACAACTTTTAAAAATATTATTTAATATCTTTAATATTTT
66 AATTAACATGAGTATTTAAATTTATCACAACTTTTAAAAATATTATTTAATATCTTTAATA-TTT
* * * *
23358451 TTTATAAATAATTATTGCATTATTTTAGTTGTTAAATATATTTCGCAAAGAAAATATGAAAAAAT
130 TTTATAAATAATTATTGCATTATTTCAGTTTTTAAATATATTTCACAAAGAAAATGTGAAAAAAT
* * *
23358516 ATATA-AACAT-CAGAACAAC-TTTAAGAAAGTTTCT
195 ATATATAA-ATACAAAACAACTTTTAAAAAAATTTCT
* * * * *
23358550 TCTATATCTCACTTTATCTCAATTTAAAACTAATTTTAAAATAATTTATCTTTTTCAATTTATCA
1 TGTACA--TCACCTTATCTCAATTTAAAATTAATTTTAAAATAATTTATCTTTTTCAATTTATCT
* * *
23358615 ACAGTTAACATGAGTATTTACATTTATCACAATTTTTAAAAATATTATTTAATATCTTTAATATT
64 ACAATTAACATGAGTATTTAAATTTATCACAACTTTTAAAAATATTATTTAATATCTTTAATATT
*
23358680 TTTTATAAATAATCT-TTACATTATCTTCAGTTTTTAAATATATTTCACAAAGAAAATGTGAAAA
129 TTTTATAAATAAT-TATTGCATTAT-TTCAGTTTTTAAATATATTTCACAAAGAAAATGTGAAAA
*
23358744 AATATATATAAATACCAAAATAACTTTTAAAAAAAATTTCT
192 AATATATATAAATA-CAAAACAACTTTT-AAAAAAATTTCT
* * * *
23358785 TGTACATCACCTTATCTTAATTTAAAATTAATTTTAAAATAATTTATTTTTTTCAATTTATTTGC
1 TGTACATCACCTTATCTCAATTTAAAATTAATTTTAAAATAATTTATCTTTTTCAATTTATCTAC
* * *
23358850 AATTAACATGAGTATTTAAATTTATCATAACTTTTAGAAATATTTTTTAATATCTTTAAT-TTTT
66 AATTAACATGAGTATTTAAATTTATCACAACTTTTAAAAATATTATTTAATATCTTTAATATTTT
* * *
23358914 TTATAAATAATTATTGTATTATTTTCAGCTTTTAAATATATTTCACAAA-AGAAATGTAAAAAAT
131 TTATAAATAATTATTGCATTA-TTTCAGTTTTTAAATATATTTCACAAAGA-AAATGTGAAAAA-
23358978 ATATATATAAATATCAAAACAACTT
193 ATATATATAAATA-CAAAACAACTT
23359003 AGAAAAGCCT
Statistics
Matches: 396, Mismatches: 44, Indels: 22
0.86 0.10 0.05
Matches are distributed among these distances:
229 4 0.01
230 23 0.06
231 156 0.39
232 59 0.15
233 137 0.35
234 3 0.01
235 14 0.04
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (230 bp):
TGTACATCACCTTATCTCAATTTAAAATTAATTTTAAAATAATTTATCTTTTTCAATTTATCTAC
AATTAACATGAGTATTTAAATTTATCACAACTTTTAAAAATATTATTTAATATCTTTAATATTTT
TTATAAATAATTATTGCATTATTTCAGTTTTTAAATATATTTCACAAAGAAAATGTGAAAAAATA
TATATAAATACAAAACAACTTTTAAAAAAATTTCT
Found at i:23369433 original size:37 final size:38
Alignment explanation
Indices: 23369388--23369470 Score: 91
Period size: 41 Copynumber: 2.1 Consensus size: 38
23369378 AGGTATTTGG
23369388 ATTTAGTTCA-TGTTT-AATAAAAAAAT-TATTTTATTT
1 ATTTAGTTCATTGTTTCAATAAAAAAATAT-TTTTATTT
*
23369424 ATTTGAGTTCAGTTTGTTTCAATAATAAAATATTTTTATTT
1 ATTT-AGTTCA--TTGTTTCAATAAAAAAATATTTTTATTT
23369465 AATTTA
1 -ATTTA
23369471 TATTCGATTA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
36 4 0.10
37 6 0.15
40 5 0.13
41 19 0.49
42 5 0.13
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.53
Consensus pattern (38 bp):
ATTTAGTTCATTGTTTCAATAAAAAAATATTTTTATTT
Found at i:23369553 original size:12 final size:12
Alignment explanation
Indices: 23369516--23369554 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
23369506 AATATTAAAT
23369516 AATATATTCATG
1 AATATATTCATG
* *
23369528 AACATA-TAATG
1 AATATATTCATG
23369539 AATATATTCATG
1 AATATATTCATG
23369551 AATA
1 AATA
23369555 ATAAATAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.36
Consensus pattern (12 bp):
AATATATTCATG
Found at i:23369597 original size:15 final size:15
Alignment explanation
Indices: 23369554--23369603 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
23369544 ATTCATGAAT
*
23369554 AATAAATAAATTAT-
1 AATAAATAAATTTTA
23369568 AATCAAATAAA-TTTA
1 AAT-AAATAAATTTTA
23369583 AATAAATAAATTTTA
1 AATAAATAAATTTTA
23369598 AATAAA
1 AATAAA
23369604 CATAAATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
14 12 0.38
15 20 0.62
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (15 bp):
AATAAATAAATTTTA
Found at i:23369609 original size:25 final size:28
Alignment explanation
Indices: 23369554--23369610 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 28
23369544 ATTCATGAAT
**
23369554 AATAAATAAATTATAATCAAATAAATTTA
1 AATAAATAAATTAT-ATCAAATAAACATA
23369583 AATAAATAAATT-T-T-AAATAAACATA
1 AATAAATAAATTATATCAAATAAACATA
23369608 AAT
1 AAT
23369611 TAACCCGAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 12 0.46
26 1 0.04
28 1 0.04
29 12 0.46
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (28 bp):
AATAAATAAATTATATCAAATAAACATA
Found at i:23369896 original size:7 final size:7
Alignment explanation
Indices: 23369884--23369924 Score: 59
Period size: 7 Copynumber: 6.1 Consensus size: 7
23369874 ATTTTACTTT
*
23369884 TATTTTG
1 TATTTTA
23369891 TATTTTA
1 TATTTTA
23369898 TA-TTTA
1 TATTTTA
23369904 TA-TTTA
1 TATTTTA
23369910 TATTTTA
1 TATTTTA
23369917 TATTTTA
1 TATTTTA
23369924 T
1 T
23369925 GTATATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 12 0.38
7 20 0.62
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (7 bp):
TATTTTA
Found at i:23369898 original size:12 final size:12
Alignment explanation
Indices: 23369881--23369935 Score: 65
Period size: 13 Copynumber: 4.3 Consensus size: 12
23369871 TCAATTTTAC
*
23369881 TTTTATTTTGTA
1 TTTTATTTTATA
23369893 TTTTATATTTATA
1 TTTTAT-TTTATA
23369906 TTTATATTTTATA
1 TTT-TATTTTATA
*
23369919 TTTTATGTATATA
1 TTTTAT-TTTATA
23369932 TTTT
1 TTTT
23369936 TCTTTTGTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
12 9 0.24
13 26 0.68
14 3 0.08
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (12 bp):
TTTTATTTTATA
Found at i:23369920 original size:26 final size:26
Alignment explanation
Indices: 23369884--23369986 Score: 84
Period size: 26 Copynumber: 3.8 Consensus size: 26
23369874 ATTTTACTTT
23369884 TATTTTGTATTTTATATTTATATTTA
1 TATTTTGTATTTTATATTTATATTTA
* * * *
23369910 TATTTTATATTTTATGTATATATTTT
1 TATTTTGTATTTTATATTTATATTTA
* *
23369936 TCTTTTGTATCTTATGTATTTATTATTTA
1 TATTTTGTAT-TT-TATATTTA-TATTTA
23369965 T-TTATT-TATTATTACTATTTAT
1 TATT-TTGTATT-TTA-TATTTAT
23369987 TAATATATAT
Statistics
Matches: 60, Mismatches: 11, Indels: 11
0.73 0.13 0.13
Matches are distributed among these distances:
26 30 0.50
27 5 0.08
28 17 0.28
29 8 0.13
ACGTcount: A:0.25, C:0.03, G:0.04, T:0.68
Consensus pattern (26 bp):
TATTTTGTATTTTATATTTATATTTA
Found at i:23369964 original size:7 final size:7
Alignment explanation
Indices: 23369947--23369988 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
23369937 CTTTTGTATC
23369947 TTATGTAT
1 TTAT-TAT
23369955 TTATTAT
1 TTATTAT
23369962 TTATTTAT
1 TTA-TTAT
23369970 TTATTA-
1 TTATTAT
*
23369976 TTACTAT
1 TTATTAT
23369983 TTATTA
1 TTATTA
23369989 ATATATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
6 5 0.17
7 14 0.47
8 11 0.37
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (7 bp):
TTATTAT
Found at i:23370092 original size:26 final size:25
Alignment explanation
Indices: 23370035--23370201 Score: 91
Period size: 21 Copynumber: 7.2 Consensus size: 25
23370025 TTTCTGTTAA
*
23370035 TATTTATATATGTATTTTATTTATC
1 TATTTATATATTTATTTTATTTATC
*
23370060 TAGTTATATATTTATTATTATTTAT-
1 TATTTATATATTTATT-TTATTTATC
*
23370085 TCATTTATATA-TTA--TAATTTATC
1 T-ATTTATATATTTATTTTATTTATC
* *
23370108 T-GTTAT-TATTATTTTTTATTTATC
1 TATTTATATATT-TATTTTATTTATC
*
23370132 T-TGTA-ATA-TT-TTTTATTTATC
1 TATTTATATATTTATTTTATTTATC
* *
23370153 T-TATTAT-TA-TT-TTCTAATTATC
1 TAT-TTATATATTTATTTTATTTATC
23370175 TA-TTA-ATA-TT-TTTTATTTATC
1 TATTTATATATTTATTTTATTTATC
23370196 TGATTT
1 T-ATTT
23370202 TTTTTTTTGG
Statistics
Matches: 114, Mismatches: 14, Indels: 30
0.72 0.09 0.19
Matches are distributed among these distances:
20 2 0.02
21 35 0.31
22 26 0.23
23 4 0.04
24 13 0.11
25 18 0.16
26 16 0.14
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.65
Consensus pattern (25 bp):
TATTTATATATTTATTTTATTTATC
Found at i:23370174 original size:43 final size:43
Alignment explanation
Indices: 23370101--23370196 Score: 140
Period size: 43 Copynumber: 2.2 Consensus size: 43
23370091 ATATATTATA
* *
23370101 ATTTATCTGTTATTATTATTTTTTATTTATCT-TGTAATATTTTTT
1 ATTTATC--TTATTATTATTTTCTAATTATCTAT-TAATATTTTTT
23370146 ATTTATCTTATTATTATTTTCTAATTATCTATTAATATTTTTT
1 ATTTATCTTATTATTATTTTCTAATTATCTATTAATATTTTTT
23370189 ATTTATCT
1 ATTTATCT
23370197 GATTTTTTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
43 40 0.83
44 1 0.02
45 7 0.15
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (43 bp):
ATTTATCTTATTATTATTTTCTAATTATCTATTAATATTTTTT
Found at i:23370208 original size:22 final size:21
Alignment explanation
Indices: 23370071--23370209 Score: 113
Period size: 21 Copynumber: 6.6 Consensus size: 21
23370061 AGTTATATAT
* * *
23370071 TTATTATTATTTATTCATTTA
1 TTATTATTTTTTATTTATCTA
** * *
23370092 TATATTATAATTTATCTGT-TA
1 T-TATTATTTTTTATTTATCTA
23370113 TTATTATTTTTTATTTATCT-
1 TTATTATTTTTTATTTATCTA
*
23370133 TGTAATATTTTTTATTTATCTTA
1 T-TATTATTTTTTATTTATC-TA
* *
23370156 TTATTATTTTCTAATTATCTA
1 TTATTATTTTTTATTTATCTA
*
23370177 TTAATATTTTTTATTTATCTGA
1 TTATTATTTTTTATTTATCT-A
*
23370199 TT-TTTTTTTTT
1 TTATTATTTTTT
23370210 GGGCTGAGAT
Statistics
Matches: 95, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
20 14 0.15
21 48 0.51
22 32 0.34
23 1 0.01
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (21 bp):
TTATTATTTTTTATTTATCTA
Found at i:23370747 original size:9 final size:9
Alignment explanation
Indices: 23370733--23370777 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
23370723 TTCGAATTTT
23370733 AGAGAGAAG
1 AGAGAGAAG
23370742 AGAGAGAAG
1 AGAGAGAAG
* *
23370751 AAAAAGAAAG
1 AGAGAG-AAG
23370761 AGAGAGAAG
1 AGAGAGAAG
23370770 AGA-AGAAG
1 AGAGAGAAG
23370778 GGTTCTGCTG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
8 5 0.16
9 19 0.61
10 7 0.23
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (9 bp):
AGAGAGAAG
Found at i:23371167 original size:58 final size:58
Alignment explanation
Indices: 23371105--23371306 Score: 244
Period size: 58 Copynumber: 3.4 Consensus size: 58
23371095 ATATTTTTAG
*
23371105 GGAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTTCAAAAAGTTTTTTTTGA
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAGTTTTTTTTGA
* * * * ** *
23371163 GGAAAAGTCGAAAGTATCAATGTTCCTTTAAATTAAAGTTTTCAAAAAAATATTTTTG-
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTCAAAAAGTTTTTTTTGA
*
23371221 GGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAAAGTTTTTTTTTGA
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC---AAAAAG-TTTTTTTTGA
** *
23371283 AAAAAAGTTGAAAGTATTAATTTT
1 GGAAAAGTTGAAAGTATCAATTTT
23371307 TTCTTATACA
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
57 5 0.04
58 64 0.54
59 17 0.14
60 5 0.04
61 7 0.06
62 21 0.18
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.39
Consensus pattern (58 bp):
GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAGTTTTTTTTGA
Found at i:23371227 original size:116 final size:120
Alignment explanation
Indices: 23371074--23371299 Score: 352
Period size: 116 Copynumber: 1.9 Consensus size: 120
23371064 TCTTTAAATA
23371074 AAATTAAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCTTAAAAAT
1 AAATTAAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCTTAAAAAT
**
23371139 AAATTTTC-AAAAAG-TTTTTTTTGAGGAAAAGTCGAAAGTATCAATGTTCCTTT
66 AAATTTTCAAAAAAGTTTTTTTTTGAAAAAAAGTCGAAAGTATCAATGTTCCTTT
* * *
23371192 AAATTAAAGTTTTC-AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT
1 AAATTAAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCTTAAAAAT
*
23371255 AAATTTTCAAAAAAAAGTTTTTTTTTGAAAAAAAGTTGAAAGTAT
66 AAATTTTC--AAAAAAGTTTTTTTTTGAAAAAAAGTCGAAAGTAT
23371300 TAATTTTTTC
Statistics
Matches: 98, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
116 41 0.42
117 14 0.14
118 13 0.13
119 6 0.06
120 24 0.24
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.38
Consensus pattern (120 bp):
AAATTAAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCTTAAAAAT
AAATTTTCAAAAAAGTTTTTTTTTGAAAAAAAGTCGAAAGTATCAATGTTCCTTT
Found at i:23372330 original size:7 final size:7
Alignment explanation
Indices: 23372318--23372343 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
23372308 AAAAACTGGG
23372318 GAAAGGT
1 GAAAGGT
23372325 GAAAGGT
1 GAAAGGT
23372332 GAAAGGT
1 GAAAGGT
23372339 GAAAG
1 GAAAG
23372344 CTAAAAGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.42, T:0.12
Consensus pattern (7 bp):
GAAAGGT
Found at i:23373638 original size:15 final size:16
Alignment explanation
Indices: 23373618--23373648 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23373608 AAATAAAAAT
23373618 TAAATT-ATTTATTGA
1 TAAATTAATTTATTGA
23373633 TAAATTAATTTATTGA
1 TAAATTAATTTATTGA
23373649 AATGAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
TAAATTAATTTATTGA
Found at i:23374964 original size:25 final size:25
Alignment explanation
Indices: 23374937--23375011 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
23374927 AATGATTATT
*
23374937 TTTTAAAGATTCAAAATATG-AAAA
1 TTTTAAAAATTCAAAATATGAAAAA
*
23374961 TTTTAAAAATTCTAAAATGTGAAAAA
1 TTTTAAAAATTC-AAAATATGAAAAA
* *
23374987 CTTTTAAAAATT-AAAAAAAGAAAAA
1 -TTTTAAAAATTCAAAATATGAAAAA
23375012 ATTCAAGTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
24 11 0.26
25 17 0.40
26 4 0.09
27 11 0.26
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.31
Consensus pattern (25 bp):
TTTTAAAAATTCAAAATATGAAAAA
Found at i:23375259 original size:19 final size:19
Alignment explanation
Indices: 23375207--23375266 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
23375197 TATGTATATA
*
23375207 AATATATAAATTTATATATTT
1 AATAAATAAATTT-T-TATTT
*
23375228 AATAAATATATTTTTATTT
1 AATAAATAAATTTTTATTT
*
23375247 AAT-AATAAAATTTTAGTTT
1 AATAAATAAATTTTTA-TTT
23375266 A
1 A
23375267 GATTAATTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
18 10 0.29
19 12 0.35
20 1 0.03
21 11 0.32
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
AATAAATAAATTTTTATTT
Found at i:23375306 original size:20 final size:21
Alignment explanation
Indices: 23375281--23375323 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
23375271 AATTAGATCT
* *
23375281 AATATATTTTTATTTA-AAAA
1 AATATATATATATTTATAAAA
23375301 AATATATATATATTTATAAAA
1 AATATATATATATTTATAAAA
23375322 AA
1 AA
23375324 ATAATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AATATATATATATTTATAAAA
Found at i:23376392 original size:4 final size:4
Alignment explanation
Indices: 23376372--23376443 Score: 51
Period size: 4 Copynumber: 18.0 Consensus size: 4
23376362 AGTTTATATA
* * *
23376372 TTAT TT-T TTAA TTAT TTAT TTAAT TT-T ATAT TTAT ATAT TTAAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TT-AT TTAT TTAT TTAT TTAT TT-AT TTAT
* *
23376420 ATAT TTAT TTAAT TT-T ATAT TTAT
1 TTAT TTAT TT-AT TTAT TTAT TTAT
23376444 ATTAAAAATA
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
3 7 0.13
4 33 0.63
5 12 0.23
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (4 bp):
TTAT
Found at i:23376411 original size:8 final size:8
Alignment explanation
Indices: 23376364--23376445 Score: 54
Period size: 8 Copynumber: 10.9 Consensus size: 8
23376354 CCTAACCCAG
23376364 TTTATATA
1 TTTATATA
*
23376372 -TTAT-TT
1 TTTATATA
23376378 TTTA-ATTA
1 TTTATA-TA
*
23376386 TTTATTTAA
1 TTTATAT-A
23376395 TTT-TATA
1 TTTATATA
23376402 TTTATATA
1 TTTATATA
23376410 -TT-TA-A
1 TTTATATA
23376415 TTTATATA
1 TTTATATA
*
23376423 TTTATTTAA
1 TTTATAT-A
23376432 TTT-TATA
1 TTTATATA
23376439 TTTATAT
1 TTTATAT
23376446 TAAAAATAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 22
0.67 0.07 0.26
Matches are distributed among these distances:
5 1 0.02
6 5 0.09
7 19 0.33
8 24 0.42
9 8 0.14
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTATATA
Found at i:23376478 original size:17 final size:18
Alignment explanation
Indices: 23376435--23376479 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
23376425 TATTTAATTT
23376435 TATA-TTTATATTAAAAA
1 TATATTTTATATTAAAAA
*
23376452 TAAAATTTTATATT-AAAA
1 T-ATATTTTATATTAAAAA
23376470 TATATTTTAT
1 TATATTTTAT
23376480 TAATTTTGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 9 0.38
18 7 0.29
19 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATATTTTATATTAAAAA
Found at i:23376829 original size:25 final size:26
Alignment explanation
Indices: 23376781--23376830 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
23376771 ACCAAACTTC
* *
23376781 TTCTTTATTTTAGACATCCATTCATT
1 TTCTTTATTTGAGAAATCCATTCATT
*
23376807 TTCTTT-TTTGAGAAATTCATTCAT
1 TTCTTTATTTGAGAAATCCATTCAT
23376831 CATACCTTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.24, C:0.16, G:0.06, T:0.54
Consensus pattern (26 bp):
TTCTTTATTTGAGAAATCCATTCATT
Found at i:23378414 original size:44 final size:44
Alignment explanation
Indices: 23378363--23378455 Score: 170
Period size: 44 Copynumber: 2.1 Consensus size: 44
23378353 ATTTAATAAT
23378363 AATTTCCTTTTATTA-TTTAAAATAAGAAAACTAATTTTATCAAA
1 AATTTCCTTTTATTATTTTAAAA-AAGAAAACTAATTTTATCAAA
23378407 AATTTCCTTTTATTATTTTAAAAAAGAAAACTAATTTTATCAAA
1 AATTTCCTTTTATTATTTTAAAAAAGAAAACTAATTTTATCAAA
23378451 AATTT
1 AATTT
23378456 TTATTTAAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
44 41 0.85
45 7 0.15
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.44
Consensus pattern (44 bp):
AATTTCCTTTTATTATTTTAAAAAAGAAAACTAATTTTATCAAA
Found at i:23378501 original size:13 final size:13
Alignment explanation
Indices: 23378477--23378511 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
23378467 TATTAAGGAC
*
23378477 ATCTTTAAAAATT
1 ATCTTAAAAAATT
*
23378490 ATTTTAAAAAATT
1 ATCTTAAAAAATT
23378503 ATCTTAAAA
1 ATCTTAAAA
23378512 TTCTTCAACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (13 bp):
ATCTTAAAAAATT
Found at i:23379246 original size:31 final size:31
Alignment explanation
Indices: 23379211--23379271 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
23379201 TTATTTAGGG
* * *
23379211 TTTTGGCTTTAAAGGTTTTGAGATTTTTGGA
1 TTTTGGATTTAAAGGTTTCGAAATTTTTGGA
* *
23379242 TTTTGGATTTTAGGGTTTCGAAATTTTTGG
1 TTTTGGATTTAAAGGTTTCGAAATTTTTGG
23379272 TTTAGGTTGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.18, C:0.03, G:0.26, T:0.52
Consensus pattern (31 bp):
TTTTGGATTTAAAGGTTTCGAAATTTTTGGA
Found at i:23379304 original size:15 final size:15
Alignment explanation
Indices: 23379284--23379343 Score: 61
Period size: 14 Copynumber: 4.1 Consensus size: 15
23379274 TAGGTTGGGG
23379284 TTTGGATTTTAAGGT
1 TTTGGATTTTAAGGT
*
23379299 TTTGGA-TTTAAGGG
1 TTTGGATTTTAAGGT
* *
23379313 TTTGGAAGTTTAAAGT
1 TTTGG-ATTTTAAGGT
*
23379329 TTT-GATTTTAGGGT
1 TTTGGATTTTAAGGT
23379343 T
1 T
23379344 CAAAGGTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
14 20 0.54
15 8 0.22
16 9 0.24
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (15 bp):
TTTGGATTTTAAGGT
Found at i:23379315 original size:29 final size:29
Alignment explanation
Indices: 23379281--23379343 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
23379271 GTTTAGGTTG
* *
23379281 GGGTTTGG-ATTTTAAGGTTTTGGATTTAA
1 GGGTTTGGAAGTTTAAAGTTTT-GATTTAA
*
23379310 GGGTTTGGAAGTTTAAAGTTTTGATTTTA
1 GGGTTTGGAAGTTTAAAGTTTTGATTTAA
23379339 GGGTT
1 GGGTT
23379344 CAAAGGTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 19 0.63
30 11 0.37
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.48
Consensus pattern (29 bp):
GGGTTTGGAAGTTTAAAGTTTTGATTTAA
Found at i:23379369 original size:14 final size:14
Alignment explanation
Indices: 23379281--23379388 Score: 54
Period size: 15 Copynumber: 7.4 Consensus size: 14
23379271 GTTTAGGTTG
*
23379281 GGGTTTGGATTTTA
1 GGGTTTTGATTTTA
* *
23379295 AGGTTTTGGATTTAA
1 GGGTTTT-GATTTTA
* *
23379310 GGGTTTGGAAGTTTA
1 GGGTTTTG-ATTTTA
**
23379325 AAGTTTTGATTTTA
1 GGGTTTTGATTTTA
*** *
23379339 GGGTTCAAAGGTTTA
1 GGGTTTTGA-TTTTA
23379354 GGGTTTTGATTTTA
1 GGGTTTTGATTTTA
* *
23379368 GGATTTTAAGTTTTA
1 GGGTTTTGA-TTTTA
*
23379383 AGGTTT
1 GGGTTT
23379389 AAAGAAAATG
Statistics
Matches: 65, Mismatches: 25, Indels: 7
0.67 0.26 0.07
Matches are distributed among these distances:
14 26 0.40
15 39 0.60
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.48
Consensus pattern (14 bp):
GGGTTTTGATTTTA
Found at i:23379382 original size:29 final size:29
Alignment explanation
Indices: 23379320--23379388 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 29
23379310 GGGTTTGGAA
* *
23379320 GTTTAAAGTTTTGATTTTAGGGTTCAAAG
1 GTTTAAGGTTTTGATTTTAGGATTCAAAG
* **
23379349 GTTTAGGGTTTTGATTTTAGGATTTTAAG
1 GTTTAAGGTTTTGATTTTAGGATTCAAAG
*
23379378 TTTTAAGGTTT
1 GTTTAAGGTTT
23379389 AAAGAAAATG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.23, C:0.01, G:0.25, T:0.51
Consensus pattern (29 bp):
GTTTAAGGTTTTGATTTTAGGATTCAAAG
Found at i:23379549 original size:17 final size:17
Alignment explanation
Indices: 23379522--23379576 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
23379512 TTATTAATAA
*
23379522 TATCTTATTATTTTTAT
1 TATCTTTTTATTTTTAT
23379539 TAT-TATTTTATTATTTAT
1 TATCT-TTTTATT-TTTAT
23379557 TATCTTTTTATATTTT-T
1 TATCTTTTTAT-TTTTAT
23379574 TAT
1 TAT
23379577 AATTCCCTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
16 1 0.03
17 13 0.39
18 17 0.52
19 2 0.06
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.73
Consensus pattern (17 bp):
TATCTTTTTATTTTTAT
Found at i:23379706 original size:11 final size:11
Alignment explanation
Indices: 23379690--23379728 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
23379680 TTAATAATAA
*
23379690 TATTTTTTTAT
1 TATTTTATTAT
*
23379701 TATTTTAAT-T
1 TATTTTATTAT
23379711 TATTTTATTAT
1 TATTTTATTAT
23379722 TATTTTA
1 TATTTTA
23379729 AAAAAATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:23379714 original size:21 final size:21
Alignment explanation
Indices: 23379662--23379729 Score: 73
Period size: 21 Copynumber: 3.0 Consensus size: 21
23379652 ATTCTCATTT
*
23379662 ATTTATTTTTTAATTTATTTAATA
1 ATTTATTTTTTTA-TTATTT--TA
*
23379686 ATAATATTTTTTTATTATTTTA
1 AT-TTATTTTTTTATTATTTTA
*
23379708 ATTTATTTTATTATTATTTTA
1 ATTTATTTTTTTATTATTTTA
23379729 A
1 A
23379730 AAAAATTGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 18 0.46
22 4 0.10
24 8 0.21
25 9 0.23
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (21 bp):
ATTTATTTTTTTATTATTTTA
Done.