Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 131 of 147
Found at i:23632030 original size:27 final size:28
Alignment explanation
Indices: 23632000--23632089 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 28
23631990 TTCAGGCCTG
* * *
23632000 GTTGAATC-GAATTGGGCTTGAAACCCA
1 GTTGAATCAAAATTGAGCCTGAAACCCA
*
23632027 GTTGAATCAAAATTGAGCCTGGAACCCA
1 GTTGAATCAAAATTGAGCCTGAAACCCA
* * *
23632055 GTTGAGTCAAAA-TCAGGCCTGAAGCCCA
1 GTTGAATCAAAATTGA-GCCTGAAACCCA
*
23632083 ATTGAAT
1 GTTGAAT
23632090 TAGAATCAGG
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
27 10 0.20
28 41 0.80
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (28 bp):
GTTGAATCAAAATTGAGCCTGAAACCCA
Found at i:23632074 original size:28 final size:28
Alignment explanation
Indices: 23632021--23632104 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 28
23632011 TTGGGCTTGA
*
23632021 AACCCAGTTGAATCAAAAT-TGAGCCTGG
1 AACCCAGTTGAATCAAAATCAG-GCCTGG
*
23632049 AACCCAGTTGAGTCAAAATCAGGCCT-G
1 AACCCAGTTGAATCAAAATCAGGCCTGG
* * *
23632076 AAGCCCAATTGAATTAGAATCAGGCCTGG
1 AA-CCCAGTTGAATCAAAATCAGGCCTGG
23632105 GTCTGAAAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
27 3 0.06
28 42 0.89
29 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (28 bp):
AACCCAGTTGAATCAAAATCAGGCCTGG
Found at i:23632525 original size:15 final size:15
Alignment explanation
Indices: 23632505--23632533 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23632495 ACAGAATAGC
23632505 GAGACTAGGATTAAT
1 GAGACTAGGATTAAT
23632520 GAGACTAGGATTAA
1 GAGACTAGGATTAA
23632534 ACCATAAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.28, T:0.24
Consensus pattern (15 bp):
GAGACTAGGATTAAT
Found at i:23632582 original size:38 final size:36
Alignment explanation
Indices: 23632521--23632626 Score: 108
Period size: 38 Copynumber: 2.9 Consensus size: 36
23632511 AGGATTAATG
**
23632521 AGACTAGGATTAAACCATAAGTCATAAAATAAAAGCA
1 AGACTAGGATTAAACCGCAAGTCATAAAATAAAAG-A
* * * *
23632558 ACGACTAGGATTAAACCGCGAGTCAGAGAAT-AATGA
1 A-GACTAGGATTAAACCGCAAGTCATAAAATAAAAGA
* *
23632594 A-ACTAGGATTGAATCGCAAGTCATAAAATAAAA
1 AGACTAGGATTAAACCGCAAGTCATAAAATAAAA
23632627 ATGACTATGA
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
34 23 0.42
35 2 0.04
36 2 0.04
37 4 0.07
38 24 0.44
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (36 bp):
AGACTAGGATTAAACCGCAAGTCATAAAATAAAAGA
Found at i:23632624 original size:34 final size:34
Alignment explanation
Indices: 23632516--23632624 Score: 101
Period size: 34 Copynumber: 3.1 Consensus size: 34
23632506 AGACTAGGAT
* **
23632516 TAATGAGACTAGGATTAAACCATAAGTCATAAAA
1 TAATGAAACTAGGATTAAACCGCAAGTCATAAAA
* * * *
23632550 TAAAAGCAACGACTAGGATTAAACCGCGAGTCAGAGAA
1 T-AATG-AA--ACTAGGATTAAACCGCAAGTCATAAAA
* *
23632588 TAATGAAACTAGGATTGAATCGCAAGTCATAAAA
1 TAATGAAACTAGGATTAAACCGCAAGTCATAAAA
23632622 TAA
1 TAA
23632625 AAATGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 8
0.73 0.16 0.10
Matches are distributed among these distances:
34 26 0.45
35 3 0.05
36 3 0.05
37 3 0.05
38 23 0.40
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (34 bp):
TAATGAAACTAGGATTAAACCGCAAGTCATAAAA
Found at i:23632772 original size:35 final size:35
Alignment explanation
Indices: 23632726--23632838 Score: 131
Period size: 34 Copynumber: 3.3 Consensus size: 35
23632716 AAAAAATGTC
*
23632726 GACTGGGATTAAACCACAAGTTAAAAAATAAAGAT
1 GACTAGGATTAAACCACAAGTTAAAAAATAAAGAT
* * *
23632761 GACTAGGATTAAATCGCAAG-TAAAAAATAAAGAC
1 GACTAGGATTAAACCACAAGTTAAAAAATAAAGAT
* * ** *
23632795 GATTGGGATCGAACCACAAGTT-AAAAATCAAGAT
1 GACTAGGATTAAACCACAAGTTAAAAAATAAAGAT
23632829 GACTAGGATT
1 GACTAGGATT
23632839 GAACTGCGAA
Statistics
Matches: 62, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
34 44 0.71
35 18 0.29
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.20
Consensus pattern (35 bp):
GACTAGGATTAAACCACAAGTTAAAAAATAAAGAT
Found at i:23632855 original size:69 final size:68
Alignment explanation
Indices: 23632737--23632870 Score: 184
Period size: 68 Copynumber: 2.0 Consensus size: 68
23632727 ACTGGGATTA
*
23632737 AACCACAAGTTAAAAAATAAAGATGACTAGGATTAAATCGCAAGTAAAAAATAAAGACGATTGGG
1 AACCACAAGTTAAAAAATAAAGATGACTAGGATTAAATCGCAAGTAAAAAATAAAGA-GATCGGG
23632802 ATCG
65 ATCG
* *
23632806 AACCACAAGTT-AAAAATCAAGATGACTAGGATTGAA-CTGCGAA-TCAAAAAATAAAGAGATCG
1 AACCACAAGTTAAAAAATAAAGATGACTAGGATTAAATC-GC-AAGT-AAAAAATAAAGAGATCG
23632868 GGA
63 GGA
23632871 CTAAATTGGG
Statistics
Matches: 59, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
67 1 0.02
68 33 0.56
69 25 0.42
ACGTcount: A:0.50, C:0.13, G:0.19, T:0.18
Consensus pattern (68 bp):
AACCACAAGTTAAAAAATAAAGATGACTAGGATTAAATCGCAAGTAAAAAATAAAGAGATCGGGA
TCG
Found at i:23632912 original size:169 final size:168
Alignment explanation
Indices: 23632651--23633044 Score: 479
Period size: 169 Copynumber: 2.3 Consensus size: 168
23632641 ATCACAAGTC
* * * *
23632651 AAATAAAGA-GATCGGGATTAAACTGTGAGTCAAAAAATAAAGAGATCGAGATTAAATTAGGGTC
1 AAATAAAGACGA-CTGGATTGAACTGCGAGTCAAAAAATAAAGAGATCGAGACTAAATTAGGGTC
* * * * *
23632715 GAAAAAATGTCGACTGGGATTAAACCACAAGTTAAAAAATAAAGATGACTAGGATTAAATCGCAA
65 GAAAAAATGACGACTGGGATTAAACCACAAGTCAAAAAATAAAAACGACTAAGATTAAATCGCAA
23632780 GTAAAAAATAAAGACGATTGGGATCGAACCA-CAAGTTAA
130 GTAAAAAATAAAGACGATTGGGATCGAA-CAGCAAGTTAA
* * * * *
23632819 AAATCAAGATGACTAGGATTGAACTGCGAATCAAAAAATAAAGAGATCGGGACTAAATTGGGGTC
1 AAATAAAGACGACT-GGATTGAACTGCGAGTCAAAAAATAAAGAGATCGAGACTAAATTAGGGTC
* *
23632884 -AAAACAATGACGACTGGGATTCAACCACAAGTCAAAAAATAAAAACGACTAAGATTAAATCGGA
65 GAAAA-AATGACGACTGGGATTAAACCACAAGTCAAAAAATAAAAACGACTAAGATTAAATCGCA
* * * * * *
23632948 AGTCAAAAATAAATATGATTGGGATTGAATAGCGAGTTAA
129 AGTAAAAAATAAAGACGATTGGGATCGAACAGCAAGTTAA
* * * * *
23632988 AAATAAAGACGACTGAGATTGAACCGCGAGTTAGAAAATAAAGAGATAGAGATTAAA
1 AAATAAAGACGACTG-GATTGAACTGCGAGTCAAAAAATAAAGAGATCGAGACTAAA
23633045 CAGCGAGTCA
Statistics
Matches: 191, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
168 15 0.08
169 176 0.92
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.20
Consensus pattern (168 bp):
AAATAAAGACGACTGGATTGAACTGCGAGTCAAAAAATAAAGAGATCGAGACTAAATTAGGGTCG
AAAAAATGACGACTGGGATTAAACCACAAGTCAAAAAATAAAAACGACTAAGATTAAATCGCAAG
TAAAAAATAAAGACGATTGGGATCGAACAGCAAGTTAA
Found at i:23632990 original size:34 final size:34
Alignment explanation
Indices: 23632918--23633057 Score: 108
Period size: 34 Copynumber: 4.1 Consensus size: 34
23632908 CCACAAGTCA
* * * *
23632918 AAAAATAAAAACGACTAAGATT-AA-ATCGGAAGTC
1 AAAAATAAAGACGACTGAGATTGAACAGC-G-AGTT
* * * * *
23632952 AAAAATAAATATGATTGGGATTGAATAGCGAGTT
1 AAAAATAAAGACGACTGAGATTGAACAGCGAGTT
*
23632986 AAAAATAAAGACGACTGAGATTGAACCGCGAGTT
1 AAAAATAAAGACGACTGAGATTGAACAGCGAGTT
* *
23633020 AGAAAATAAAGA-GA-TAGAGATTAAACAGCGAGTC
1 A-AAAATAAAGACGACT-GAGATTGAACAGCGAGTT
23633054 AAAA
1 AAAA
23633058 GAACAATGAC
Statistics
Matches: 86, Mismatches: 16, Indels: 9
0.77 0.14 0.08
Matches are distributed among these distances:
33 4 0.05
34 67 0.78
35 13 0.15
36 2 0.02
ACGTcount: A:0.51, C:0.09, G:0.21, T:0.19
Consensus pattern (34 bp):
AAAAATAAAGACGACTGAGATTGAACAGCGAGTT
Found at i:23633119 original size:67 final size:67
Alignment explanation
Indices: 23632998--23633123 Score: 159
Period size: 67 Copynumber: 1.9 Consensus size: 67
23632988 AAATAAAGAC
* *
23632998 GACTGAGATTGAACCGCGAGTTAGAAAATAAAGAGATAGAGATTAAACAGCGAGTCAAAAGAACA
1 GACTGAGATTGAACCACGAGTTAGAAAATAAAGAGATAGAAATTAAACAGCGAGTCAAAAGAACA
23633063 AT
66 AT
* * *
23633065 GACTGGGATTGAACCACGA-TTCAGAAAATAAGGAGACT-GAAATTGAACTA-CGAGTCAAA
1 GACTGAGATTGAACCACGAGTT-AGAAAATAAAGAGA-TAGAAATTAAAC-AGCGAGTCAAA
23633124 GAATAACAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
66 2 0.04
67 47 0.92
68 2 0.04
ACGTcount: A:0.45, C:0.13, G:0.24, T:0.17
Consensus pattern (67 bp):
GACTGAGATTGAACCACGAGTTAGAAAATAAAGAGATAGAAATTAAACAGCGAGTCAAAAGAACA
AT
Found at i:23633148 original size:34 final size:34
Alignment explanation
Indices: 23633110--23633386 Score: 174
Period size: 34 Copynumber: 8.1 Consensus size: 34
23633100 ACTGAAATTG
* *
23633110 AACTACGAGTCAAAGAATAACAAGATCGGGATTA
1 AACTACGAGTCAAAAAATAACAAGATCGAGATTA
* * *
23633144 AACTACGAGTCAAAAAATAATGC-A-ATCAAAATTG
1 AACTACGAGTCAAAAAATAA--CAAGATCGAGATTA
* * * *
23633178 AA-TCGCGAGTCAAAGAAGAATAAGATC-AGGATTA
1 AACT-ACGAGTCAAAAAATAACAAGATCGA-GATTA
* * * *
23633212 AACTACGAGTCAGAAAATAATAAGACCAAGATTA
1 AACTACGAGTCAAAAAATAACAAGATCGAGATTA
* *
23633246 AACCACGAGTCAAAGAATAACAACGATCGAGATTA
1 AACTACGAGTCAAAAAATAACAA-GATCGAGATTA
* * * * * * *
23633281 AACCACGA-TCTAAAATTAA-AGAGATTGGGACTG
1 AACTACGAGTCAAAAAATAACA-AGATCGAGATTA
* *
23633314 AACCACGAGTCAAAAAATAA-AGATGATCGAGATTG
1 AACTACGAGTCAAAAAATAACA-A-GATCGAGATTA
* *
23633349 AA-TCACAAGTCAAAAAATAACAGAGATCGGGATTA
1 AACT-ACGAGTCAAAAAATAACA-AGATCGAGATTA
23633384 AAC
1 AAC
23633387 CATAAATCAA
Statistics
Matches: 190, Mismatches: 38, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
33 19 0.10
34 111 0.58
35 56 0.29
36 4 0.02
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (34 bp):
AACTACGAGTCAAAAAATAACAAGATCGAGATTA
Found at i:23633162 original size:68 final size:69
Alignment explanation
Indices: 23633069--23633368 Score: 220
Period size: 68 Copynumber: 4.4 Consensus size: 69
23633059 AACAATGACT
* * * * *
23633069 GGGATTGAACCACGATTCAGAAAATAAGGAGACTGAAATTGAACTACGAGTCAAAGAATAACAA-
1 GGGATTAAACTACGAGTCAAAAAATAAGGAGACTGAAATTGAACCACGAGTCAAAGAATAACAAC
23633133 GATC
66 GATC
* * * * * *
23633137 GGGATTAAACTACGAGTCAAAAAATAATGCA-A-TCAAAATTGAATCGCGAGTCAAAGAAGAATA
1 GGGATTAAACTACGAGTCAAAAAATAA-GGAGACT-GAAATTGAACCACGAGTCAAAGAATAACA
23633200 A-GATC
64 ACGATC
* * ** * *
23633205 AGGATTAAACTACGAGTCAGAAAATAATAAGAC-CAAGATTAAACCACGAGTCAAAGAATAACAA
1 GGGATTAAACTACGAGTCAAAAAATAAGGAGACTGAA-ATTGAACCACGAGTCAAAGAATAACAA
23633269 CGATC
65 CGATC
* * * * * * ** * *
23633274 GAGATTAAACCACGA-TCTAAAATTAAAGAGATTGGGACTGAACCACGAGTCAAAAAATAA-AGA
1 GGGATTAAACTACGAGTCAAAAAATAAGGAGACTGAAATTGAACCACGAGTCAAAGAATAACA-A
*
23633337 TGATC
65 CGATC
* * *
23633342 GAGATTGAA-TCACAAGTCAAAAAATAA
1 GGGATTAAACT-ACGAGTCAAAAAATAA
23633369 CAGAGATCGG
Statistics
Matches: 180, Mismatches: 42, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
67 5 0.03
68 148 0.82
69 27 0.15
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.18
Consensus pattern (69 bp):
GGGATTAAACTACGAGTCAAAAAATAAGGAGACTGAAATTGAACCACGAGTCAAAGAATAACAAC
GATC
Found at i:23633290 original size:17 final size:18
Alignment explanation
Indices: 23633239--23633300 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 18
23633229 TAATAAGACC
23633239 AAGATTAAACCACGAGTCA
1 AAGATTAAACCACGA-TCA
* *
23633258 AAGAAT-AACAACGATC-
1 AAGATTAAACCACGATCA
*
23633274 GAGATTAAACCACGATCTA
1 AAGATTAAACCACGATC-A
23633293 AA-ATTAAA
1 AAGATTAAA
23633301 GAGATTGGGA
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
16 4 0.12
17 11 0.32
18 13 0.38
19 6 0.18
ACGTcount: A:0.52, C:0.18, G:0.13, T:0.18
Consensus pattern (18 bp):
AAGATTAAACCACGATCA
Found at i:23645809 original size:22 final size:22
Alignment explanation
Indices: 23645782--23645837 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
23645772 GGTTTTCAGA
23645782 ATTTTAGATTTTAAGG-TTTTGG
1 ATTTTAGATTTT-AGGATTTTGG
**
23645804 ATTTTAGGGTTTAGGATTTTGG
1 ATTTTAGATTTTAGGATTTTGG
23645826 ATTTTAGGATTT
1 ATTTTA-GATTT
23645838 CAATTTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 3 0.11
22 22 0.79
23 3 0.11
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (22 bp):
ATTTTAGATTTTAGGATTTTGG
Found at i:23645820 original size:15 final size:15
Alignment explanation
Indices: 23645784--23645837 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
23645774 TTTTCAGAAT
*
23645784 TTTA-GATTTTAAGG
1 TTTAGGATTTTAGGG
*
23645798 TTTTGGATTTTAGGG
1 TTTAGGATTTTAGGG
*
23645813 TTTAGGATTTT-GGAT
1 TTTAGGATTTTAGG-G
23645828 TTTAGGATTT
1 TTTAGGATTT
23645838 CAATTTTGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 5 0.15
15 29 0.85
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (15 bp):
TTTAGGATTTTAGGG
Found at i:23645853 original size:58 final size:59
Alignment explanation
Indices: 23645791--23645918 Score: 145
Period size: 58 Copynumber: 2.2 Consensus size: 59
23645781 AATTTTAGAT
* * *
23645791 TTTAAGGTTTTGGA-TTTTAGGGTTTAGGATTTTGGA-TTTTAGGATTTCAATTTTGGGG
1 TTTAAGGTTTTGAAGTTTTA-GGTTTAGGATTTTGAAGGTTTAGGATTTCAATTTTGGGG
* * * * *
23645849 TTTAAGG-TTCGAAGTTTTAGTTTTAGGGTTTTGAAGGTTTAGGGTTTCAATTTTTGGG
1 TTTAAGGTTTTGAAGTTTTAGGTTTAGGATTTTGAAGGTTTAGGATTTCAATTTTGGGG
23645907 TTTAGAGGTTTT
1 TTTA-AGGTTTT
23645919 AGGGTTTAGT
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
57 17 0.30
58 35 0.61
59 3 0.05
60 2 0.04
ACGTcount: A:0.19, C:0.02, G:0.29, T:0.50
Consensus pattern (59 bp):
TTTAAGGTTTTGAAGTTTTAGGTTTAGGATTTTGAAGGTTTAGGATTTCAATTTTGGGG
Found at i:23645917 original size:29 final size:29
Alignment explanation
Indices: 23645828--23646134 Score: 191
Period size: 29 Copynumber: 10.6 Consensus size: 29
23645818 GATTTTGGAT
* *
23645828 TTTAGGATTTCAATTTTGGGGTTTA-AGG
1 TTTAGGGTTTCAATTTTAGGGTTTAGAGG
* * * * *
23645856 -TTCGAAGTTTTAGTTTTAGGGTTTTGAAGG
1 TTTAG-GGTTTCAATTTTAGGGTTTAG-AGG
*
23645886 TTTAGGGTTTCAATTTTTGGGTTTAGAGG
1 TTTAGGGTTTCAATTTTAGGGTTTAGAGG
* * *
23645915 TTTTAGGGTTT-AGTTTCA-AGTTTAGAGG
1 -TTTAGGGTTTCAATTTTAGGGTTTAGAGG
*
23645943 ATTTAGGGTTTCAATTTTAGGGTTT-GAGA
1 -TTTAGGGTTTCAATTTTAGGGTTTAGAGG
* * *
23645972 TTTCAGGATTTCAATTTTAGAGTTT-GATGT
1 TTT-AGGGTTTCAATTTTAGGGTTTAGA-GG
* * *
23646002 TTTAGGGTTTCGATTTTAAGATTT-GAGG
1 TTTAGGGTTTCAATTTTAGGGTTTAGAGG
* ** *
23646030 TTTGGGGTTTTGATTTTATGGTTTA-AGG
1 TTTAGGGTTTCAATTTTAGGGTTTAGAGG
* * * * *
23646058 TTTTAGGATTTCGATTTCAAGGTTTAAAGG
1 -TTTAGGGTTTCAATTTTAGGGTTTAGAGG
* *
23646088 TTTTAGGGTTT-AGTTTTAGGGTTTTGAGTG
1 -TTTAGGGTTTCAATTTTAGGGTTTAGAG-G
* *
23646118 TTTAGAGTTTTAATTTT
1 TTTAGGGTTTCAATTTT
23646135 GAGGTTTTGA
Statistics
Matches: 216, Mismatches: 49, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
27 3 0.01
28 60 0.28
29 94 0.44
30 56 0.26
31 3 0.01
ACGTcount: A:0.21, C:0.03, G:0.27, T:0.49
Consensus pattern (29 bp):
TTTAGGGTTTCAATTTTAGGGTTTAGAGG
Found at i:23645948 original size:58 final size:59
Alignment explanation
Indices: 23645827--23646134 Score: 231
Period size: 58 Copynumber: 5.3 Consensus size: 59
23645817 GGATTTTGGA
* * ** * * * *
23645827 TTTTAGGATTTCAATTTTGGGGTTTA-AGGTTCGAAGTTTTAGTTTTAGGGTTTTGAAGG
1 TTTTAGGGTTTCAATTTTAGGGTTTAGAGGTTTTAGGGTTTAGTTTTAGAGTTTAG-AGG
* *
23645886 -TTTAGGGTTTCAATTTTTGGGTTTAGAGGTTTTAGGGTTTAGTTTCA-AGTTTAGAGG
1 TTTTAGGGTTTCAATTTTAGGGTTTAGAGGTTTTAGGGTTTAGTTTTAGAGTTTAGAGG
* * * * * *
23645943 ATTTAGGGTTTCAATTTTAGGGTTT-GAGATTTCAGGATTTCAATTTTAGAGTTT-GATG
1 TTTTAGGGTTTCAATTTTAGGGTTTAGAGGTTTTAGGGTTT-AGTTTTAGAGTTTAGAGG
* * * * *
23646001 TTTTAGGGTTTCGATTTTAAGATTT-GAGG-TTTGGGGTTTTGATTTTATG-GTTTA-AGG
1 TTTTAGGGTTTCAATTTTAGGGTTTAGAGGTTTTAGGGTTTAG-TTTTA-GAGTTTAGAGG
* * * * * * *
23646058 TTTTAGGATTTCGATTTCAAGGTTTAAAGGTTTTAGGGTTTAGTTTTAGGGTTTTGA-G
1 TTTTAGGGTTTCAATTTTAGGGTTTAGAGGTTTTAGGGTTTAGTTTTAGAGTTTAGAGG
* *
23646116 TGTTTAGAGTTTTAATTTT
1 T-TTTAGGGTTTCAATTTT
23646135 GAGGTTTTGA
Statistics
Matches: 198, Mismatches: 39, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
57 56 0.28
58 98 0.49
59 44 0.22
ACGTcount: A:0.20, C:0.03, G:0.27, T:0.49
Consensus pattern (59 bp):
TTTTAGGGTTTCAATTTTAGGGTTTAGAGGTTTTAGGGTTTAGTTTTAGAGTTTAGAGG
Found at i:23646105 original size:86 final size:86
Alignment explanation
Indices: 23645869--23646105 Score: 230
Period size: 86 Copynumber: 2.7 Consensus size: 86
23645859 GAAGTTTTAG
* * ** *
23645869 TTTTAGGGTTTTGAAGGTTT-AGGGTTTCAATTTTTGGGTTTAGAGGTTTTAGGGTTTAGTTTCA
1 TTTTAGGG-TTT-AAGATTTCAGGATTTCAA-TTTAAGGTTTAGAGGTTTTAGGGTTTAGTTTTA
23645933 AGTTTAGAGGATTTAGGGTTTCAA
63 AGTTTAGAGGATTTAGGGTTTCAA
* * * *
23645957 TTTTAGGGTTTGAGATTTCAGGATTTCAATTTTAGAGTTT-GATGTTTTAGGGTTTCGATTTTAA
1 TTTTAGGGTTTAAGATTTCAGGATTTCAATTTAAG-GTTTAGAGGTTTTAGGGTTTAG-TTTTAA
* **
23646021 GATTT-GAGG-TTTGGGGTTTTGA
64 G-TTTAGAGGATTTAGGGTTTCAA
* * * * *
23646043 TTTTATGGTTTAAGGTTTTAGGATTTCGATTTCAAGGTTTAAAGGTTTTAGGGTTTAGTTTTA
1 TTTTAGGGTTTAAGATTTCAGGATTTCAATTT-AAGGTTTAGAGGTTTTAGGGTTTAGTTTTA
23646106 GGGTTTTGAG
Statistics
Matches: 124, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
86 71 0.57
87 42 0.34
88 11 0.09
ACGTcount: A:0.21, C:0.03, G:0.27, T:0.49
Consensus pattern (86 bp):
TTTTAGGGTTTAAGATTTCAGGATTTCAATTTAAGGTTTAGAGGTTTTAGGGTTTAGTTTTAAGT
TTAGAGGATTTAGGGTTTCAA
Found at i:23646134 original size:22 final size:22
Alignment explanation
Indices: 23646109--23646156 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
23646099 AGTTTTAGGG
23646109 TTTTGAGTGTTTAGAGTTTT-AA
1 TTTTGAG-GTTTAGAGTTTTGAA
* *
23646131 TTTTGAGGTTTTGATTTTTGAA
1 TTTTGAGGTTTAGAGTTTTGAA
23646153 TTTT
1 TTTT
23646157 AAAAAAATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.19, C:0.00, G:0.21, T:0.60
Consensus pattern (22 bp):
TTTTGAGGTTTAGAGTTTTGAA
Found at i:23646434 original size:13 final size:12
Alignment explanation
Indices: 23646411--23646461 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
23646401 CTAGTTCATC
23646411 TTATA-ATTATT
1 TTATATATTATT
23646422 TTATATATATATT
1 TTATATAT-TATT
*
23646435 TTAT-TATCATT
1 TTATATATTATT
* *
23646446 TTATATTTTTTT
1 TTATATATTATT
23646458 TTAT
1 TTAT
23646462 TTTTATTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
11 12 0.36
12 13 0.39
13 8 0.24
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (12 bp):
TTATATATTATT
Found at i:23646547 original size:3 final size:3
Alignment explanation
Indices: 23646532--23646564 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
23646522 ACTAAAGTTG
*
23646532 TTA TTA TCA -TA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
23646565 GATAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 1 0.04
3 26 0.96
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:23647880 original size:27 final size:28
Alignment explanation
Indices: 23647850--23647912 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
23647840 TTTTGGGCCT
* * *
23647850 AGTTGAATC-AAATTGGGCTTGGAGTCC
1 AGTTGAATCAAAATTGAGCTTGAAGCCC
23647877 AGTT-AAGTCAAAATTGAGCTTGAAGCCC
1 AGTTGAA-TCAAAATTGAGCTTGAAGCCC
*
23647905 AATTGAAT
1 AGTTGAAT
23647913 TGAAATTAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 6 0.21
28 19 0.66
29 2 0.07
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (28 bp):
AGTTGAATCAAAATTGAGCTTGAAGCCC
Found at i:23650376 original size:37 final size:37
Alignment explanation
Indices: 23650335--23650407 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
23650325 AAATAATTTT
* *
23650335 TTTATATATTATT-AATTTTTATATTAAA-TTTTATTAA
1 TTTATAGATT-TTAAATTTTTAT-TAAAATTTTTATTAA
*
23650372 TTTATCGATTTTAAATTTTTATTAAAATTTTTATTA
1 TTTATAGATTTTAAATTTTTATTAAAATTTTTATTA
23650408 TATTATCTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 6 0.19
37 25 0.81
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (37 bp):
TTTATAGATTTTAAATTTTTATTAAAATTTTTATTAA
Found at i:23650414 original size:37 final size:36
Alignment explanation
Indices: 23650348--23650422 Score: 91
Period size: 37 Copynumber: 2.1 Consensus size: 36
23650338 ATATATTATT
*
23650348 AATTTTTATATTAAATTTTATTAATTTATCGATTTTA
1 AATTTTTATATAAAATTTTATTAATTTATC-ATTTTA
*
23650385 AATTTTTAT-TAAAATTTTTATT-ATATTATCTTTTTA
1 AATTTTTATATAAAA-TTTTATTAAT-TTATCATTTTA
23650421 AA
1 AA
23650423 AAAATTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.38
37 21 0.62
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (36 bp):
AATTTTTATATAAAATTTTATTAATTTATCATTTTA
Found at i:23650535 original size:3 final size:3
Alignment explanation
Indices: 23650527--23650571 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
23650517 CCAGTTTCTT
23650527 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23650572 CAAATCAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23654166 original size:2 final size:2
Alignment explanation
Indices: 23654161--23654220 Score: 75
Period size: 2 Copynumber: 30.0 Consensus size: 2
23654151 CATTTGTGTG
* * * *
23654161 TA TA TA TA AA TA TA TA TA TC TA TA TA TA GA TA GA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
23654203 TA TA TA TT TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
23654221 GAAAGAGAGA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:23658239 original size:25 final size:29
Alignment explanation
Indices: 23658184--23658246 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
23658174 TATAATATAT
23658184 ATAATATAAATGTAAAATATTTTTATGTA
1 ATAATATAAATGTAAAATATTTTTATGTA
*
23658213 ATAATATAAAT-T-ATATA-TTTTAT-TA
1 ATAATATAAATGTAAAATATTTTTATGTA
23658238 ATAAT-TAAA
1 ATAATATAAA
23658247 ACTGATCAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
24 4 0.12
25 7 0.21
26 6 0.18
27 4 0.12
28 1 0.03
29 11 0.33
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (29 bp):
ATAATATAAATGTAAAATATTTTTATGTA
Found at i:23661135 original size:20 final size:20
Alignment explanation
Indices: 23661082--23661133 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
23661072 AAAATAAATT
* *
23661082 AATT-TATAATTTTAATAAA
1 AATTATATATTTTTAACAAA
*
23661101 AATTATATATATTTAACAAA
1 AATTATATATTTTTAACAAA
23661121 AA-TATATATTTTT
1 AATTATATATTTTT
23661134 TATATTTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
AATTATATATTTTTAACAAA
Found at i:23665906 original size:75 final size:75
Alignment explanation
Indices: 23665783--23665937 Score: 301
Period size: 75 Copynumber: 2.1 Consensus size: 75
23665773 TACATTTGAT
23665783 AAATTACAAGATGCTTATTATGAGTTGTATGATGAATGTAAATCAATGATGAGAAATTACAAGAA
1 AAATTACAAGATGCTTATTATGAGTTGTATGATGAATGTAAATCAATGATGAGAAATTACAAGAA
23665848 AGTAATTTCA
66 AGTAATTTCA
23665858 AAATTACAAGATGCTTATTATGAGTTGTATGATGAATGTAAATCAATGATGAGAAATTACAAGAA
1 AAATTACAAGATGCTTATTATGAGTTGTATGATGAATGTAAATCAATGATGAGAAATTACAAGAA
*
23665923 AGTGATTTCA
66 AGTAATTTCA
23665933 AAATT
1 AAATT
23665938 GAATATTGAA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 79 1.00
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.32
Consensus pattern (75 bp):
AAATTACAAGATGCTTATTATGAGTTGTATGATGAATGTAAATCAATGATGAGAAATTACAAGAA
AGTAATTTCA
Found at i:23667846 original size:23 final size:24
Alignment explanation
Indices: 23667800--23667846 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
23667790 GCATGATGGA
*
23667800 AATGATTTTGTGATTTTTATACAT
1 AATGATTTTGTGATTTTGATACAT
23667824 AATGA-TTTGTGATTGTTGA-ACAT
1 AATGATTTTGTGATT-TTGATACAT
23667847 GCCTATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.30, C:0.04, G:0.17, T:0.49
Consensus pattern (24 bp):
AATGATTTTGTGATTTTGATACAT
Found at i:23667931 original size:349 final size:348
Alignment explanation
Indices: 23667293--23667991 Score: 1290
Period size: 349 Copynumber: 2.0 Consensus size: 348
23667283 GATGGTTAAA
23667293 AATGAGCTTGATTAGTTATGAGATTTATTAAGGTATTTTTCAAGAAAAAAGAGCTTTAAAATATC
1 AATGAGCTTGATTAGTTATGAGATTTATTAAGGTATTTTTCAAGAAAAAAGAGCTTTAAAATATC
* * *
23667358 AAAAAAAAAATATTGAAAATATTAAGCTTTGAATGATTTATCCTATGGTATTTTGCATAAATATA
66 AAAAAAAAAATATTGAAAATATTAAGCTATGAATGATTTATCATATAGTATTTTGCATAAATATA
23667423 TTTGTTTGAATGATTTTGGCATGATGGAAATGATTTTGTGATTTTTATACATAATGATTTATGAT
131 TTTGTTTGAATGATTTTGGCATGATGGAAATGATTTTGTGATTTTTATACATAATGATTTATGAT
23667488 TGTTGAACATGCCTATATAACCATGATATTTAAAATTGCTCAATTTGTTTATAATGATTGGATCT
196 TGTTGAACATGCCTATATAACCATGATATTTAAAATTGCTCAATTTGTTTATAATGATTGGATCT
*
23667553 TGTGAATTCTTTAAACTTGATTGTGTTATACATAATTATTTTGATTCTTAATTTGTGATATTGGT
261 TATGAATTCTTTAAACTTGATTGTGTTATACATAATTATTTTGATTCTTAATTTGTGATATTGGT
*
23667618 GAATTGATGAACATCTTGTGTTT
326 GAATTGATGAACATCTTATGTTT
*
23667641 AATGAGCTTGATTAGTTATGAGATTTATTAAGGTATTTTTCAAGAAAAATGAGCTTTAAAATATC
1 AATGAGCTTGATTAGTTATGAGATTTATTAAGGTATTTTTCAAGAAAAAAGAGCTTTAAAATATC
* *
23667706 AAAAATAAAAATCTTGAAAATATTAAGCTATGAATGATTTATTATATAGTATTTTGCATAAATAT
66 AAAAA-AAAAATATTGAAAATATTAAGCTATGAATGATTTATCATATAGTATTTTGCATAAATAT
*
23667771 ATTTGTTTGAATGATTTTGGCATGATGGAAATGATTTTGTGATTTTTATACATAATGATTTGTGA
130 ATTTGTTTGAATGATTTTGGCATGATGGAAATGATTTTGTGATTTTTATACATAATGATTTATGA
*
23667836 TTGTTGAACATGCCTATATAACCATGATATTTAAAATTGCTCAATTTGTTTATAATGCTTGGATC
195 TTGTTGAACATGCCTATATAACCATGATATTTAAAATTGCTCAATTTGTTTATAATGATTGGATC
*
23667901 TTATGAATTCTTTAAATTTGATTGTGTTATACATAATTATTTTGATTCTTAATTTGTGATATTGG
260 TTATGAATTCTTTAAACTTGATTGTGTTATACATAATTATTTTGATTCTTAATTTGTGATATTGG
23667966 TGAATTGATGAACATCTTATGTTT
325 TGAATTGATGAACATCTTATGTTT
23667990 AA
1 AA
23667992 AAGATATACA
Statistics
Matches: 339, Mismatches: 11, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
348 69 0.20
349 270 0.80
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (348 bp):
AATGAGCTTGATTAGTTATGAGATTTATTAAGGTATTTTTCAAGAAAAAAGAGCTTTAAAATATC
AAAAAAAAAATATTGAAAATATTAAGCTATGAATGATTTATCATATAGTATTTTGCATAAATATA
TTTGTTTGAATGATTTTGGCATGATGGAAATGATTTTGTGATTTTTATACATAATGATTTATGAT
TGTTGAACATGCCTATATAACCATGATATTTAAAATTGCTCAATTTGTTTATAATGATTGGATCT
TATGAATTCTTTAAACTTGATTGTGTTATACATAATTATTTTGATTCTTAATTTGTGATATTGGT
GAATTGATGAACATCTTATGTTT
Found at i:23676111 original size:39 final size:39
Alignment explanation
Indices: 23676058--23676140 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
23676048 GCTTAATCAC
* * *
23676058 ATAATCATAGAAATGTGCTTTATAAATTTATGCATCATA
1 ATAATCATAAAAATGAGCTTTATAAATTAATGCATCATA
* *
23676097 ATAATCATAAAAATGAGCTTTATAAATTAATGTATCATG
1 ATAATCATAAAAATGAGCTTTATAAATTAATGCATCATA
23676136 ATAAT
1 ATAAT
23676141 AATGCTAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (39 bp):
ATAATCATAAAAATGAGCTTTATAAATTAATGCATCATA
Found at i:23676238 original size:17 final size:18
Alignment explanation
Indices: 23676213--23676247 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
23676203 CAGTATTTTC
23676213 CAAAGTATATTC-CATTT
1 CAAAGTATATTCACATTT
*
23676230 CAAATTATATTCACATTT
1 CAAAGTATATTCACATTT
23676248 AAACAAAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.37, C:0.17, G:0.03, T:0.43
Consensus pattern (18 bp):
CAAAGTATATTCACATTT
Found at i:23680309 original size:17 final size:17
Alignment explanation
Indices: 23680287--23680321 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
23680277 TAAAGATGAA
23680287 TAATTATTTTTAATTTT
1 TAATTATTTTTAATTTT
23680304 TAATTATTTTTAATTTT
1 TAATTATTTTTAATTTT
23680321 T
1 T
23680322 GTTTCATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TAATTATTTTTAATTTT
Found at i:23682595 original size:81 final size:81
Alignment explanation
Indices: 23682460--23682610 Score: 248
Period size: 81 Copynumber: 1.9 Consensus size: 81
23682450 TCAAGATTGG
* * *
23682460 AACATGCGAGGCACTTGTCTTGGCATGTAACTCGTGTATTATGAACATTTCAGACAGGGAATCCA
1 AACATGCAAGGCACATGTCTTGGCATGTAACTCGTGTAGTATGAACATTTCAGACAGGGAATCCA
23682525 GAAGCCAATGTATGGA
66 GAAGCCAATGTATGGA
* * *
23682541 AACATGCAAGGCACATGTCTTGGCATGTAACTTGTGTGGTATGAACATTTCAGACGGGGAATCCA
1 AACATGCAAGGCACATGTCTTGGCATGTAACTCGTGTAGTATGAACATTTCAGACAGGGAATCCA
23682606 GAAGC
66 GAAGC
23682611 TAGATATATG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (81 bp):
AACATGCAAGGCACATGTCTTGGCATGTAACTCGTGTAGTATGAACATTTCAGACAGGGAATCCA
GAAGCCAATGTATGGA
Found at i:23687799 original size:20 final size:20
Alignment explanation
Indices: 23687761--23687800 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
23687751 GTTCTTGATA
*
23687761 CATCATCATTAATATATCAT
1 CATCATCATTAATACATCAT
* *
23687781 CATCATCATTCATGCATCAT
1 CATCATCATTAATACATCAT
23687801 TCCCTGTGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.38
Consensus pattern (20 bp):
CATCATCATTAATACATCAT
Found at i:23696582 original size:1 final size:1
Alignment explanation
Indices: 23696572--23696602 Score: 53
Period size: 1 Copynumber: 31.0 Consensus size: 1
23696562 TCAAAGGAGG
*
23696572 TTTTTCTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
23696603 CAAGTGAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:23702185 original size:2 final size:2
Alignment explanation
Indices: 23702130--23702170 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
23702120 AATGGGGGGG
23702130 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
23702171 CACCTGCAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:23705021 original size:18 final size:18
Alignment explanation
Indices: 23704998--23705043 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
23704988 TTGGCATACA
23704998 AAGTTGAAAAAATTATGG
1 AAGTTGAAAAAATTATGG
*
23705016 AAGTTGAAAGAATTATGG
1 AAGTTGAAAAAATTATGG
*
23705034 AAGTGGAAAA
1 AAGTTGAAAA
23705044 GTGATGTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (18 bp):
AAGTTGAAAAAATTATGG
Found at i:23706951 original size:3 final size:3
Alignment explanation
Indices: 23706943--23706972 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
23706933 CCTAACCTTT
23706943 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23706973 ATTAAAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23708796 original size:19 final size:19
Alignment explanation
Indices: 23708774--23708813 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
23708764 TTATTTATTC
23708774 ATATGGTCATT-ATATATAT
1 ATAT-GTCATTCATATATAT
*
23708793 ATATGTCATTCATTTATAT
1 ATATGTCATTCATATATAT
23708812 AT
1 AT
23708814 GCATAACATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.50
Consensus pattern (19 bp):
ATATGTCATTCATATATAT
Found at i:23719874 original size:3 final size:3
Alignment explanation
Indices: 23719866--23719900 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
23719856 AGGCCCAACC
23719866 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
23719901 TATTTTGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:23720752 original size:16 final size:16
Alignment explanation
Indices: 23720701--23720752 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
23720691 TCAATAAGGG
23720701 TTTTTTTGGGTTTGAT
1 TTTTTTTGGGTTTGAT
* *
23720717 TCTTTTTGGG---AAT
1 TTTTTTTGGGTTTGAT
*
23720730 TTCTTTTGGGTTTGAT
1 TTTTTTTGGGTTTGAT
23720746 TTTTTTT
1 TTTTTTT
23720753 TTAAAATTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
13 10 0.37
16 17 0.63
ACGTcount: A:0.08, C:0.04, G:0.21, T:0.67
Consensus pattern (16 bp):
TTTTTTTGGGTTTGAT
Found at i:23720761 original size:30 final size:29
Alignment explanation
Indices: 23720704--23720761 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
23720694 ATAAGGGTTT
**
23720704 TTTTGGGTTTGATTCTTTTTGGGAATTTC
1 TTTTGGGTTTGATTCTTTTTGAAAATTTC
* *
23720733 TTTTGGGTTTGATTTTTTTTTTAAAATTT
1 TTTTGGGTTTGA-TTCTTTTTGAAAATTT
23720762 TTAGGTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.14, C:0.03, G:0.19, T:0.64
Consensus pattern (29 bp):
TTTTGGGTTTGATTCTTTTTGAAAATTTC
Found at i:23723640 original size:21 final size:21
Alignment explanation
Indices: 23723614--23723670 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
23723604 ATTTTAGTAT
**
23723614 TTGTTTAATGCTAAACATTAA
1 TTGTTTAACCCTAAACATTAA
*
23723635 TTGTTTAACCCTAAACATTAG
1 TTGTTTAACCCTAAACATTAA
23723656 TTGTTTAACCCTAAA
1 TTGTTTAACCCTAAA
23723671 TACTATTTGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (21 bp):
TTGTTTAACCCTAAACATTAA
Found at i:23724259 original size:9 final size:9
Alignment explanation
Indices: 23724217--23724272 Score: 51
Period size: 10 Copynumber: 5.9 Consensus size: 9
23724207 CAAACACATG
23724217 ATAAACAACA
1 ATAAACAA-A
*
23724227 TATAAAAAAA
1 -ATAAACAAA
*
23724237 ATACACATAA
1 ATAAACA-AA
23724247 ATAAACAAA
1 ATAAACAAA
23724256 AT-AACAAA
1 ATAAACAAA
23724264 ATGAAACAA
1 AT-AAACAA
23724273 CATATAGCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
8 8 0.21
9 9 0.24
10 14 0.37
11 7 0.18
ACGTcount: A:0.71, C:0.12, G:0.02, T:0.14
Consensus pattern (9 bp):
ATAAACAAA
Found at i:23724272 original size:18 final size:19
Alignment explanation
Indices: 23724228--23724272 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
23724218 TAAACAACAT
*
23724228 ATAAAAAAAATACACATAA
1 ATAAACAAAATACACATAA
23724247 ATAAACAAAATA-ACA-AA
1 ATAAACAAAATACACATAA
23724264 ATGAAACAA
1 AT-AAACAA
23724273 CATATAGCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 9 0.38
19 11 0.46
ACGTcount: A:0.73, C:0.11, G:0.02, T:0.13
Consensus pattern (19 bp):
ATAAACAAAATACACATAA
Found at i:23726082 original size:12 final size:13
Alignment explanation
Indices: 23726065--23726097 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
23726055 CTATCTTTTT
23726065 CTGCTACAG-TGA
1 CTGCTACAGTTGA
*
23726077 CTGCTATAGTTGA
1 CTGCTACAGTTGA
23726090 CTGCTACA
1 CTGCTACA
23726098 AATTTTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.30
Consensus pattern (13 bp):
CTGCTACAGTTGA
Found at i:23752087 original size:18 final size:18
Alignment explanation
Indices: 23752064--23752099 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
23752054 TATCATTTAG
23752064 ATCATATATCTATCACAT
1 ATCATATATCTATCACAT
23752082 ATCATATATCTATCACAT
1 ATCATATATCTATCACAT
23752100 TCTTCACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (18 bp):
ATCATATATCTATCACAT
Found at i:23754602 original size:22 final size:22
Alignment explanation
Indices: 23754572--23754617 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
23754562 AAAATAACTC
* * *
23754572 AAGATGAAATAAACAAAGATAA
1 AAGAAGAAAAAAACAAAAATAA
*
23754594 AAGAAGAAAAAAATAAAAATAA
1 AAGAAGAAAAAAACAAAAATAA
23754616 AA
1 AA
23754618 TAAAATGATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.76, C:0.02, G:0.11, T:0.11
Consensus pattern (22 bp):
AAGAAGAAAAAAACAAAAATAA
Found at i:23756545 original size:54 final size:54
Alignment explanation
Indices: 23756486--23756620 Score: 139
Period size: 54 Copynumber: 2.5 Consensus size: 54
23756476 TTGGCAAAGT
* *
23756486 AGCCTTAATACAATAAACATGGTGCAT-A-GGAGCATTTTGGGCATATTGGTGTAA
1 AGCCTTAATACAATAAATATGGTGCATAATGGAGCA--TTGAGCATATTGGTGTAA
* * * * * * * *
23756540 AGCCTTAACATAATAAATATGGTACGTAATGGTGCATTGAGCTTGTTGGTGTAG
1 AGCCTTAATACAATAAATATGGTGCATAATGGAGCATTGAGCATATTGGTGTAA
*
23756594 AGCCTTAATACAATAAATATGATGCAT
1 AGCCTTAATACAATAAATATGGTGCAT
23756621 TGGGTGTTCT
Statistics
Matches: 64, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
54 58 0.91
55 1 0.02
56 5 0.08
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (54 bp):
AGCCTTAATACAATAAATATGGTGCATAATGGAGCATTGAGCATATTGGTGTAA
Found at i:23764788 original size:18 final size:19
Alignment explanation
Indices: 23764744--23764790 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
23764734 TTTTTATATT
23764744 TTTTTATTATATTTAAATAA
1 TTTTTATT-TATTTAAATAA
* *
23764764 ATTTTATTTATTT-ATTAA
1 TTTTTATTTATTTAAATAA
23764782 TTTTTATTT
1 TTTTTATTT
23764791 GATAAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 12 0.50
19 5 0.21
20 7 0.29
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTATTTATTTAAATAA
Found at i:23764789 original size:14 final size:15
Alignment explanation
Indices: 23764770--23764804 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
23764760 ATAAATTTTA
*
23764770 TTTATTT-ATTAATT
1 TTTATTTGATAAATT
23764784 TTTATTTGATAAATT
1 TTTATTTGATAAATT
23764799 TTTATT
1 TTTATT
23764805 CAAAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTATTTGATAAATT
Found at i:23764853 original size:23 final size:22
Alignment explanation
Indices: 23764827--23764879 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 22
23764817 TTAATTTATC
23764827 TTAAAAATTTATTTAAATATAAA
1 TTAAAAATTTATTTAAATAT-AA
*
23764850 TTAAAAATTTTATTTTAATATAA
1 TTAAAAA-TTTATTTAAATATAA
23764873 -TAAAAAT
1 TTAAAAAT
23764880 ATAAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 1 0.04
22 6 0.21
23 9 0.32
24 12 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TTAAAAATTTATTTAAATATAA
Found at i:23764866 original size:29 final size:29
Alignment explanation
Indices: 23764828--23764893 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
23764818 TAATTTATCT
23764828 TAAAAATTTA-TTTAA-AT-AT--AAAT-
1 TAAAAATTTATTTTAATATAATAAAAATA
23764851 TAAAAATTTTATTTTAATATAATAAAAATA
1 TAAAAA-TTTATTTTAATATAATAAAAATA
23764881 TAAAAATTTATTT
1 TAAAAATTTATTT
23764894 AATTCAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
23 6 0.17
24 4 0.11
25 5 0.14
26 2 0.06
27 2 0.06
29 11 0.31
30 6 0.17
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (29 bp):
TAAAAATTTATTTTAATATAATAAAAATA
Found at i:23764911 original size:15 final size:16
Alignment explanation
Indices: 23764883--23764912 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
23764873 TAAAAATATA
23764883 AAAATTTATTTAATTC
1 AAAATTTATTTAATTC
23764899 AAAATTT-TTTAATT
1 AAAATTTATTTAATT
23764913 ATTTTAACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
AAAATTTATTTAATTC
Found at i:23765283 original size:33 final size:31
Alignment explanation
Indices: 23765229--23765303 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 31
23765219 TATAAAATTA
*
23765229 TAAA-TTTTTAAAATTTGATTTGAATCTTTAT
1 TAAATTTTTTAAAATTTAATTTG-ATCTTTAT
23765260 TAAATTTTTATAAAATTTAATTTGATCTTTAT
1 TAAATTTTT-TAAAATTTAATTTGATCTTTAT
* *
23765292 AAAATTTATTAA
1 TAAATTTTTTAA
23765304 TTCGGATCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
31 7 0.18
32 19 0.49
33 13 0.33
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.53
Consensus pattern (31 bp):
TAAATTTTTTAAAATTTAATTTGATCTTTAT
Found at i:23765355 original size:20 final size:21
Alignment explanation
Indices: 23765314--23765360 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
23765304 TTCGGATCAA
*
23765314 TATTTTGATTTTTTAATTTAT
1 TATTTTGATTTTTTAATATAT
23765335 T-TTTTGATTTTTT-ATAATAT
1 TATTTTGATTTTTTAAT-ATAT
23765355 TATTTT
1 TATTTT
23765361 AATATATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 2 0.09
20 16 0.70
21 5 0.22
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.72
Consensus pattern (21 bp):
TATTTTGATTTTTTAATATAT
Found at i:23765429 original size:18 final size:19
Alignment explanation
Indices: 23765406--23765445 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
23765396 TTTTATTTTG
23765406 TAAAAATT-TAAAAATATA
1 TAAAAATTATAAAAATATA
23765424 TAAAAATTAATAAAAATATA
1 TAAAAATT-ATAAAAATATA
23765444 TA
1 TA
23765446 TAATTCAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.40
20 12 0.60
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAAATTATAAAAATATA
Found at i:23765592 original size:19 final size:18
Alignment explanation
Indices: 23765557--23765592 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
23765547 AATAAAATAA
23765557 AAATAAAAATAAAAATTC
1 AAATAAAAATAAAAATTC
*
23765575 AAATAAAATATAATAATT
1 AAATAAAA-ATAAAAATT
23765593 TTAAATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATAAAAATAAAAATTC
Found at i:23765691 original size:114 final size:117
Alignment explanation
Indices: 23765558--23765788 Score: 432
Period size: 117 Copynumber: 2.0 Consensus size: 117
23765548 ATAAAATAAA
*
23765558 AATAAAAATAAAAATTCAAATAAAATATAATAATTTTAAATAATTATTTA-TTA-TTATTT-TTT
1 AATAAAAATAAAAATTCAAACAAAATATAATAATTTTAAATAATTATTTATTTATTTATTTATTT
23765620 TTTCACACCTAACTGCAACAGAGTCAATAGGACAAGACAATGGCTATTGGTT
66 TTTCACACCTAACTGCAACAGAGTCAATAGGACAAGACAATGGCTATTGGTT
23765672 AATAAAAATAAAAATTCAAACAAAATATAATAATTTTAAATAATTATTTATTTATTTATTTATTT
1 AATAAAAATAAAAATTCAAACAAAATATAATAATTTTAAATAATTATTTATTTATTTATTTATTT
23765737 TTTCACACCTAACTGCAACAGAGTCAATAGGACAAGACAATGGCTATTGGTT
66 TTTCACACCTAACTGCAACAGAGTCAATAGGACAAGACAATGGCTATTGGTT
23765789 TGAAACTTGC
Statistics
Matches: 113, Mismatches: 1, Indels: 3
0.97 0.01 0.03
Matches are distributed among these distances:
114 49 0.43
115 3 0.03
116 6 0.05
117 55 0.49
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.36
Consensus pattern (117 bp):
AATAAAAATAAAAATTCAAACAAAATATAATAATTTTAAATAATTATTTATTTATTTATTTATTT
TTTCACACCTAACTGCAACAGAGTCAATAGGACAAGACAATGGCTATTGGTT
Found at i:23769529 original size:2 final size:2
Alignment explanation
Indices: 23769524--23769573 Score: 66
Period size: 2 Copynumber: 25.5 Consensus size: 2
23769514 ATACATAACT
* * *
23769524 TA TA TA TA CA TA CA T- TA TA TA TA GA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23769565 TA TA TA TA T
1 TA TA TA TA T
23769574 CTCTCTGTGT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (2 bp):
TA
Found at i:23769534 original size:15 final size:15
Alignment explanation
Indices: 23769514--23769562 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
23769504 ACACCCACAC
23769514 ATACATA-ACTTATAT
1 ATACATACA-TTATAT
23769529 ATACATACATTATAT
1 ATACATACATTATAT
* *
23769544 ATAGATATATATATAT
1 ATACATACAT-TATAT
23769560 ATA
1 ATA
23769563 TATATATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
15 21 0.70
16 9 0.30
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (15 bp):
ATACATACATTATAT
Found at i:23775057 original size:16 final size:16
Alignment explanation
Indices: 23775038--23775072 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
23775028 TTCTGTTTTA
23775038 TTTTTC-TTTTTCATTT
1 TTTTTCATTTTT-ATTT
23775054 TTTTTCATTTTTATTT
1 TTTTTCATTTTTATTT
23775070 TTT
1 TTT
23775073 ATTTTTACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTCATTTTTATTT
Found at i:23775063 original size:23 final size:22
Alignment explanation
Indices: 23775033--23775078 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
23775023 GTCTCTTCTG
*
23775033 TTTTATTTTTCTTTTTCATTTT
1 TTTTATTTTTATTTTTCATTTT
*
23775055 TTTTCATTTTTATTTTTTATTTT
1 TTTT-ATTTTTATTTTTCATTTT
23775078 T
1 T
23775079 ACCTTCGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.11, C:0.07, G:0.00, T:0.83
Consensus pattern (22 bp):
TTTTATTTTTATTTTTCATTTT
Found at i:23778987 original size:10 final size:11
Alignment explanation
Indices: 23778972--23779047 Score: 61
Period size: 12 Copynumber: 6.7 Consensus size: 11
23778962 CAATTGTTTG
23778972 TTATTTTA-TT
1 TTATTTTATTT
23778982 TTATTTTCATTT
1 TTATTTT-ATTT
23778994 TTATTTTGACTTT
1 TTATTTT-A-TTT
*
23779007 TTATTAT-TTT
1 TTATTTTATTT
23779017 TTA-TTTACTTT
1 TTATTTTA-TTT
23779028 TTATTAATTA-TT
1 TTATT--TTATTT
23779040 TTATTTTA
1 TTATTTTA
23779048 AGATAATAGG
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
9 2 0.04
10 16 0.29
11 7 0.13
12 18 0.33
13 9 0.16
14 3 0.05
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.74
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:23779009 original size:13 final size:12
Alignment explanation
Indices: 23778972--23779032 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 12
23778962 CAATTGTTTG
23778972 TTATTTT-A-TT
1 TTATTTTCATTT
23778982 TTATTTTCATTT
1 TTATTTTCATTT
*
23778994 TTATTTTGACTTT
1 TTATTTTCA-TTT
*
23779007 TTATTAT--TTT
1 TTATTTTCATTT
*
23779017 TTATTTAC-TTT
1 TTATTTTCATTT
23779028 TTATT
1 TTATT
23779033 AATTATTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
10 15 0.35
11 9 0.21
12 10 0.23
13 9 0.21
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (12 bp):
TTATTTTCATTT
Found at i:23779021 original size:23 final size:23
Alignment explanation
Indices: 23778991--23779047 Score: 82
Period size: 23 Copynumber: 2.5 Consensus size: 23
23778981 TTTATTTTCA
23778991 TTTTTATTTTGACTTTTTATT-AT
1 TTTTTATTTT-ACTTTTTATTAAT
23779014 TTTTTA-TTTACTTTTTATTAAT
1 TTTTTATTTTACTTTTTATTAAT
23779036 TATTTTATTTTA
1 T-TTTTATTTTA
23779048 AGATAATAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
21 10 0.32
22 6 0.19
23 11 0.35
24 4 0.13
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.74
Consensus pattern (23 bp):
TTTTTATTTTACTTTTTATTAAT
Found at i:23779028 original size:11 final size:11
Alignment explanation
Indices: 23778980--23779032 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
23778970 TGTTATTTTA
*
23778980 TTTTATTTTCAT
1 TTTTATTTAC-T
23778992 TTTTATTTTGACT
1 TTTTA-TTT-ACT
*
23779005 TTTTA-TTATT
1 TTTTATTTACT
23779015 TTTTATTTACT
1 TTTTATTTACT
23779026 TTTTATT
1 TTTTATT
23779033 AATTATTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
10 7 0.20
11 13 0.37
12 5 0.14
13 9 0.26
14 1 0.03
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (11 bp):
TTTTATTTACT
Found at i:23780113 original size:24 final size:25
Alignment explanation
Indices: 23780086--23780132 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
23780076 GATAATTATC
23780086 CAAA-GATAAGATTCTTAA-AAATTT
1 CAAATGATAA-ATTCTTAATAAATTT
*
23780110 CAAATGATAAATTTTTAATAAAT
1 CAAATGATAAATTCTTAATAAAT
23780133 CTCTATGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.36
Consensus pattern (25 bp):
CAAATGATAAATTCTTAATAAATTT
Found at i:23780343 original size:53 final size:54
Alignment explanation
Indices: 23780236--23780336 Score: 134
Period size: 52 Copynumber: 1.9 Consensus size: 54
23780226 AAAAAAAGAG
* *
23780236 AAATAAAAAATTTTTTAAAAATGACCCAAATGGTGATAAATTTAGAAATAAAAA
1 AAATAAAAAATTTTTTAAAAATGACCCAAATGATGAAAAATTTAGAAATAAAAA
* * * *
23780290 AAATAAAAAA-TTTTTAAATA-GGCTCAAATTATGAAAAATTTAGAAAT
1 AAATAAAAAATTTTTTAAAAATGACCCAAATGATGAAAAATTTAGAAAT
23780337 TTAAAAAGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
52 22 0.54
53 9 0.22
54 10 0.24
ACGTcount: A:0.56, C:0.05, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATAAAAAATTTTTTAAAAATGACCCAAATGATGAAAAATTTAGAAATAAAAA
Found at i:23782115 original size:18 final size:15
Alignment explanation
Indices: 23782072--23782106 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
23782062 ATTTTTTAAG
23782072 TAATA-AAAT-ATAA
1 TAATATAAATAATAA
23782085 TAATATAAATAATAA
1 TAATATAAATAATAA
23782100 TAATATA
1 TAATATA
23782107 TTAATTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 5 0.25
14 4 0.20
15 11 0.55
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TAATATAAATAATAA
Found at i:23783528 original size:24 final size:25
Alignment explanation
Indices: 23783499--23783553 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
23783489 TTTTTAAATT
23783499 TAAAAAATAA-AAAAAACCCAAAAA
1 TAAAAAATAATAAAAAACCCAAAAA
***
23783523 TAAAAAATAATAAAAAATGTAAAAA
1 TAAAAAATAATAAAAAACCCAAAAA
23783548 TAAAAA
1 TAAAAA
23783554 TTTTCTCTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.78, C:0.05, G:0.02, T:0.15
Consensus pattern (25 bp):
TAAAAAATAATAAAAAACCCAAAAA
Found at i:23784073 original size:17 final size:17
Alignment explanation
Indices: 23784051--23784084 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23784041 ATTCTAAGGT
23784051 ATTCTGAAAAACGATGC
1 ATTCTGAAAAACGATGC
* *
23784068 ATTCTGAGAAGCGATGC
1 ATTCTGAAAAACGATGC
23784085 TTAAAAAATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (17 bp):
ATTCTGAAAAACGATGC
Found at i:23784455 original size:18 final size:18
Alignment explanation
Indices: 23784429--23784479 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
23784419 ATTATCTTTT
23784429 TAATAAATTTTAATAAAA
1 TAATAAATTTTAATAAAA
** *
23784447 TTTTAAATTTTATTAAAA
1 TAATAAATTTTAATAAAA
*
23784465 TAATATATTTTAATA
1 TAATAAATTTTAATA
23784480 TGTGGCCAAC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAATAAATTTTAATAAAA
Found at i:23785689 original size:37 final size:37
Alignment explanation
Indices: 23785648--23785746 Score: 126
Period size: 37 Copynumber: 2.7 Consensus size: 37
23785638 TAATCGAGGC
* * *
23785648 TTCAACTATGGAAAATAAAATATTCCTCCACCAAGGA
1 TTCAACTTTGAAAAATAAAATACTCCTCCACCAAGGA
* * * *
23785685 TTCAATTTTGAAAAATAAAGTACTCCTCCACCGAGGC
1 TTCAACTTTGAAAAATAAAATACTCCTCCACCAAGGA
*
23785722 TTTAACTTTGAAAAATAAAATACTC
1 TTCAACTTTGAAAAATAAAATACTC
23785747 TTCAACAACT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.28
Consensus pattern (37 bp):
TTCAACTTTGAAAAATAAAATACTCCTCCACCAAGGA
Found at i:23785771 original size:42 final size:40
Alignment explanation
Indices: 23785691--23785826 Score: 161
Period size: 42 Copynumber: 3.4 Consensus size: 40
23785681 AGGATTCAAT
* *
23785691 TTTGAAAAATAAAGTACTCCTC-C-ACCGAGGCTTT-AAC
1 TTTGAAAAATAAAATACTCCTCACAACTGAGGCTTTAAAC
*
23785728 TTTGAAAAATAAAATACTCTTCAACAACTGAGGCATTTAAAC
1 TTTGAAAAATAAAATACTCCTC-ACAACTGAGGC-TTTAAAC
* *
23785770 TTTTAAATATAAAATACTCCCTCACAACTGAGGCTTTGAAAC
1 TTTGAAAAATAAAATACT-CCTCACAACTGAGGCTTT-AAAC
23785812 TTTTGAAAAATAAAA
1 -TTTGAAAAATAAAA
23785827 AGATATCAGA
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
37 20 0.24
39 1 0.01
40 7 0.08
41 6 0.07
42 34 0.41
43 15 0.18
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.29
Consensus pattern (40 bp):
TTTGAAAAATAAAATACTCCTCACAACTGAGGCTTTAAAC
Found at i:23785931 original size:22 final size:22
Alignment explanation
Indices: 23785861--23785931 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
23785851 TACCTTGAGA
* *
23785861 TCTTAAAGATTATGCCCATAGT
1 TCTTAAAGATTATGACCAAAGT
* * **
23785883 TTTTATAA-ATCATGTATGAAAG-
1 TCTTA-AAGATTATG-ACCAAAGT
23785905 TCTTAAAGATTATGACCAAAGT
1 TCTTAAAGATTATGACCAAAGT
23785927 TCTTA
1 TCTTA
23785932 TAAATCATGC
Statistics
Matches: 35, Mismatches: 10, Indels: 8
0.66 0.19 0.15
Matches are distributed among these distances:
21 7 0.20
22 23 0.66
23 5 0.14
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.38
Consensus pattern (22 bp):
TCTTAAAGATTATGACCAAAGT
Found at i:23786406 original size:18 final size:19
Alignment explanation
Indices: 23786383--23786424 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
23786373 GTAAATGCAA
23786383 TGCAAAAGATTC-AAGATT
1 TGCAAAAGATTCTAAGATT
*
23786401 TGC-AAAGTTTCTAAGATT
1 TGCAAAAGATTCTAAGATT
*
23786419 CGCAAA
1 TGCAAA
23786425 GGTCCTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 7 0.35
18 11 0.55
19 2 0.10
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (19 bp):
TGCAAAAGATTCTAAGATT
Found at i:23787065 original size:70 final size:70
Alignment explanation
Indices: 23786980--23787138 Score: 178
Period size: 70 Copynumber: 2.3 Consensus size: 70
23786970 AATGTCAAAA
* * * * * *
23786980 ATTTAAATGCTCACCAAATGGTGCAAAT-ACATGGTTCTAACTATGACACAAATGCAATATTT-A
1 ATTTAAATACTCACCAAATGATGC-AATGA-ATAGTACAAACAATGACACAAATGCAATATTTAA
23787043 AACAATG
64 AACAATG
* * *
23787050 ATTTATATACTCACCAAATGATGCAATGAATAGTACAAACAATGATACAAATGCACTATTTAAAA
1 ATTTAAATACTCACCAAATGATGCAATGAATAGTACAAACAATGACACAAATGCAATATTTAAAA
*
23787115 TAATG
66 CAATG
* *
23787120 ATTTAAATATTCACTAAAT
1 ATTTAAATACTCACCAAAT
23787139 AATGTAGATG
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
69 29 0.39
70 45 0.61
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (70 bp):
ATTTAAATACTCACCAAATGATGCAATGAATAGTACAAACAATGACACAAATGCAATATTTAAAA
CAATG
Found at i:23788025 original size:16 final size:17
Alignment explanation
Indices: 23787992--23788027 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
23787982 TCATTCAATC
*
23787992 TTTCTTTCTTTTTTCTT
1 TTTCTTTCTTTTTCCTT
23788009 TTTCTTT-TTTTTCCTT
1 TTTCTTTCTTTTTCCTT
23788025 TTT
1 TTT
23788028 GACTATGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTCTTTCTTTTTCCTT
Found at i:23788258 original size:18 final size:19
Alignment explanation
Indices: 23788228--23788263 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
23788218 GTAATCAAAC
*
23788228 CAATGATCATTTCTTTTCT
1 CAATGATCATTTCCTTTCT
23788247 CAATGA-CATTTCCTTTC
1 CAATGATCATTTCCTTTC
23788264 CACATTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.22, C:0.25, G:0.06, T:0.47
Consensus pattern (19 bp):
CAATGATCATTTCCTTTCT
Found at i:23788324 original size:20 final size:18
Alignment explanation
Indices: 23788278--23788333 Score: 55
Period size: 20 Copynumber: 3.1 Consensus size: 18
23788268 TTTTTCATCT
*
23788278 TTCTTTTTTCATGTTTTC
1 TTCTTTTTTCATCTTTTC
23788296 TT-TTCTTTTCATTCTCTTTC
1 TTCTT-TTTTCA-TCT-TTTC
23788316 TTCTTTTTT--TCTTTTC
1 TTCTTTTTTCATCTTTTC
23788332 TT
1 TT
23788334 TTTGCACTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
16 6 0.18
17 5 0.15
18 8 0.24
19 2 0.06
20 10 0.30
21 2 0.06
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.75
Consensus pattern (18 bp):
TTCTTTTTTCATCTTTTC
Found at i:23792062 original size:14 final size:14
Alignment explanation
Indices: 23792040--23792084 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
23792030 ACGGGAAGGA
23792040 TTGTTTGTTTTTAT
1 TTGTTTGTTTTTAT
* *
23792054 TTTTTTGTTTTTGT
1 TTGTTTGTTTTTAT
* *
23792068 TTGTGTGTTTTTGT
1 TTGTTTGTTTTTAT
23792082 TTG
1 TTG
23792085 GGTATTTAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.02, C:0.00, G:0.20, T:0.78
Consensus pattern (14 bp):
TTGTTTGTTTTTAT
Found at i:23792068 original size:20 final size:20
Alignment explanation
Indices: 23792043--23792083 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
23792033 GGAAGGATTG
* *
23792043 TTTGTTTTTATTTTTTTGTT
1 TTTGTTTGTATGTTTTTGTT
*
23792063 TTTGTTTGTGTGTTTTTGTT
1 TTTGTTTGTATGTTTTTGTT
23792083 T
1 T
23792084 GGGTATTTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.02, C:0.00, G:0.17, T:0.80
Consensus pattern (20 bp):
TTTGTTTGTATGTTTTTGTT
Found at i:23792440 original size:19 final size:20
Alignment explanation
Indices: 23792389--23792440 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
23792379 TATCGTGCAA
23792389 GTTCTTTTTTT-TTTTTTTG
1 GTTCTTTTTTTATTTTTTTG
* *
23792408 GTTCTGTTTCTATTTTTTT-
1 GTTCTTTTTTTATTTTTTTG
*
23792427 GTTGTTTTTTTATT
1 GTTCTTTTTTTATT
23792441 AATTATTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 20 0.74
20 7 0.26
ACGTcount: A:0.04, C:0.06, G:0.12, T:0.79
Consensus pattern (20 bp):
GTTCTTTTTTTATTTTTTTG
Found at i:23792651 original size:16 final size:17
Alignment explanation
Indices: 23792627--23792660 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
23792617 AAAATCTCCA
*
23792627 TGATTATTTTTTT-TTT
1 TGATAATTTTTTTATTT
23792643 TGATAATTTTTTTATTT
1 TGATAATTTTTTTATTT
23792660 T
1 T
23792661 TTGCATGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (17 bp):
TGATAATTTTTTTATTT
Found at i:23797725 original size:28 final size:28
Alignment explanation
Indices: 23797688--23797751 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 28
23797678 TACAGTGAAA
23797688 TATTAAATATGATA-TCTGAACTT-TAAAAT
1 TATT-AATATGATACT-TGAA-TTATAAAAT
*
23797717 TATTAATATGATACTTGAATTATAAATT
1 TATTAATATGATACTTGAATTATAAAAT
23797745 TATTAAT
1 TATTAAT
23797752 TAATATGATA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
27 2 0.06
28 25 0.78
29 5 0.16
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.45
Consensus pattern (28 bp):
TATTAATATGATACTTGAATTATAAAAT
Found at i:23802852 original size:39 final size:39
Alignment explanation
Indices: 23802772--23802858 Score: 120
Period size: 39 Copynumber: 2.2 Consensus size: 39
23802762 CACCTCAAAG
* * * * *
23802772 CCTTACTCTCGCTCAAGTAGTTTTCAGCAGAATGCATCT
1 CCTTATTCTCGCTCAAGCAGTTTTCAGAACAATGCACCT
*
23802811 CCTTATTCTCGCTCAAGCAGTTTTCAGAACAATGTACCT
1 CCTTATTCTCGCTCAAGCAGTTTTCAGAACAATGCACCT
23802850 CCTTATTCT
1 CCTTATTCT
23802859 GGATACGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.36
Consensus pattern (39 bp):
CCTTATTCTCGCTCAAGCAGTTTTCAGAACAATGCACCT
Found at i:23806902 original size:20 final size:20
Alignment explanation
Indices: 23806877--23806918 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
23806867 TTTTAAAAAT
23806877 AAACTCTAGTCTCCTAAACC
1 AAACTCTAGTCTCCTAAACC
23806897 AAACTCTAGTCTCCTAAACC
1 AAACTCTAGTCTCCTAAACC
23806917 AA
1 AA
23806919 CTACCTATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.33, G:0.05, T:0.24
Consensus pattern (20 bp):
AAACTCTAGTCTCCTAAACC
Found at i:23811028 original size:27 final size:27
Alignment explanation
Indices: 23810990--23811084 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 27
23810980 TGTTGATTTG
* *
23810990 CCAATTTCCCAACCAACTCCTTCAAAA
1 CCAAATTCCCAACCAGCTCCTTCAAAA
23811017 CCAAATTCCCAACCAGCTCCTTCAAAA
1 CCAAATTCCCAACCAGCTCCTTCAAAA
** * *
23811044 CTTGAA-TACCAACCAGCCCCTTCAAAA
1 C-CAAATTCCCAACCAGCTCCTTCAAAA
* *
23811071 CCAGATTCTCAACC
1 CCAAATTCCCAACC
23811085 TACCCAACCT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
26 1 0.02
27 52 0.95
28 2 0.04
ACGTcount: A:0.36, C:0.40, G:0.04, T:0.20
Consensus pattern (27 bp):
CCAAATTCCCAACCAGCTCCTTCAAAA
Found at i:23812715 original size:25 final size:25
Alignment explanation
Indices: 23812681--23812743 Score: 92
Period size: 25 Copynumber: 2.5 Consensus size: 25
23812671 TGACTTCTGT
23812681 TTTAGGCCTTCATTG-CGAAACCCTG
1 TTTAGGCCTTCATTGTCG-AACCCTG
23812706 TTTAGGCCTTCATTGTCGAACCCTG
1 TTTAGGCCTTCATTGTCGAACCCTG
* *
23812731 TTAAGTCCTTCAT
1 TTTAGGCCTTCAT
23812744 AGCCATTCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 33 0.94
26 2 0.06
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.37
Consensus pattern (25 bp):
TTTAGGCCTTCATTGTCGAACCCTG
Found at i:23818141 original size:22 final size:22
Alignment explanation
Indices: 23818116--23818159 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
23818106 TGTATATTTA
**
23818116 TATTTGTATCTTTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
23818138 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
23818160 GATAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.45
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:23818652 original size:36 final size:36
Alignment explanation
Indices: 23818603--23818675 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
23818593 CCTTATCTTC
23818603 AGGGAAAGACTTCATTCATGAAAGATAAGGATAAAG
1 AGGGAAAGACTTCATTCATGAAAGATAAGGATAAAG
*
23818639 AGGGGAAGACTTCATTCATGAAAGATAAGGATAAAG
1 AGGGAAAGACTTCATTCATGAAAGATAAGGATAAAG
23818675 A
1 A
23818676 CTTCTTTTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.47, C:0.08, G:0.26, T:0.19
Consensus pattern (36 bp):
AGGGAAAGACTTCATTCATGAAAGATAAGGATAAAG
Found at i:23823547 original size:23 final size:22
Alignment explanation
Indices: 23823498--23823549 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
23823488 TTTGGGAAGA
* *
23823498 AAATTTTTCAGCCTTCATTGCT
1 AAATTTTTCAGCCTTCATAGCC
* *
23823520 GAATTTTTTAGGCCTTCATAGCC
1 AAATTTTTCA-GCCTTCATAGCC
23823543 AAATTTT
1 AAATTTT
23823550 GTTAAGTCTG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (22 bp):
AAATTTTTCAGCCTTCATAGCC
Found at i:23829275 original size:19 final size:20
Alignment explanation
Indices: 23829243--23829286 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
23829233 ATAAATCAAA
*
23829243 TTATATATTTTTTTTAATTT
1 TTATATATTTTTTTAAATTT
23829263 TTATATA-TTTTTTAAATTT
1 TTATATATTTTTTTAAATTT
23829282 TTATA
1 TTATA
23829287 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
TTATATATTTTTTTAAATTT
Found at i:23829931 original size:18 final size:18
Alignment explanation
Indices: 23829908--23829955 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
23829898 TAATGACATC
*
23829908 ATATAAAATATATAGAAT
1 ATATAAAATATATACAAT
* *
23829926 ATATAAATTTTATACAAT
1 ATATAAAATATATACAAT
23829944 A-ATAATAATATA
1 ATATAA-AATATA
23829956 GTTAATTCAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (18 bp):
ATATAAAATATATACAAT
Found at i:23835668 original size:24 final size:26
Alignment explanation
Indices: 23835635--23835683 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
23835625 ATGAATTACA
23835635 TTTTAATTATATATAA-ATA-TAATAC
1 TTTTAATTATAT-TAAGATATTAATAC
23835660 TTTT-ATTATATTAAGATATTAATA
1 TTTTAATTATATTAAGATATTAATA
23835684 TAATAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 3 0.14
24 10 0.45
25 9 0.41
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (26 bp):
TTTTAATTATATTAAGATATTAATAC
Found at i:23835721 original size:18 final size:20
Alignment explanation
Indices: 23835677--23835734 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 20
23835667 ATATTAAGAT
*
23835677 ATTAATATAATAATATATAA
1 ATTAAAATAATAATATATAA
*
23835697 ATATAAAATAA-AATA-ATTA
1 AT-TAAAATAATAATATATAA
23835716 ATTAAAAT-ATAATTATATA
1 ATTAAAATAATAA-TATATA
23835735 TAATGGGGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
17 1 0.03
18 8 0.26
19 7 0.23
20 8 0.26
21 7 0.23
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTAAAATAATAATATATAA
Found at i:23836791 original size:11 final size:12
Alignment explanation
Indices: 23836745--23836778 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
23836735 ATTAAATATA
23836745 AAAAAAGTAAAT
1 AAAAAAGTAAAT
*
23836757 AGAAAAG-AAAT
1 AAAAAAGTAAAT
23836768 AAAAAAGTAAA
1 AAAAAAGTAAA
23836779 AAGTAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (12 bp):
AAAAAAGTAAAT
Found at i:23837244 original size:16 final size:14
Alignment explanation
Indices: 23837225--23837273 Score: 57
Period size: 16 Copynumber: 3.5 Consensus size: 14
23837215 ATTAAATAAC
23837225 AAAAAAGAAGAAATGA
1 AAAAAAGAA-AAA-GA
*
23837241 AAAATAGAAAAAGA
1 AAAAAAGAAAAAGA
23837255 AAAAAA-AAAAA-A
1 AAAAAAGAAAAAGA
23837267 AAAAAAG
1 AAAAAAG
23837274 GAAGATGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
12 7 0.23
13 5 0.17
14 7 0.23
15 3 0.10
16 8 0.27
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (14 bp):
AAAAAAGAAAAAGA
Found at i:23839182 original size:16 final size:17
Alignment explanation
Indices: 23839157--23839198 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
23839147 ATAAAAAATT
*
23839157 TAAA-TTATTTAATATA
1 TAAATTTATTTAATAAA
*
23839173 T-AATTTATTTATTAAA
1 TAAATTTATTTAATAAA
23839189 TAAATTTATT
1 TAAATTTATT
23839199 CAAATTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 12 0.55
17 8 0.36
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TAAATTTATTTAATAAA
Found at i:23845948 original size:22 final size:24
Alignment explanation
Indices: 23845907--23845950 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
23845897 AATTTTAAAT
*
23845907 TTTTATATATTATTTTAATAAAAA
1 TTTTATATATTATTTAAATAAAAA
23845931 TTTTA-ATA-TATTTAAATAAA
1 TTTTATATATTATTTAAATAAA
23845951 TTTATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 3 0.16
24 5 0.26
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTTATATATTATTTAAATAAAAA
Found at i:23850893 original size:11 final size:11
Alignment explanation
Indices: 23850831--23850902 Score: 53
Period size: 11 Copynumber: 6.5 Consensus size: 11
23850821 TTTTAATTTT
23850831 TAATTTT-AT-
1 TAATTTTAATA
23850840 TAATTATTATATA
1 TAATT-TTA-ATA
* *
23850853 TTATTTAAATA
1 TAATTTTAATA
23850864 TAAAATTTTAATA
1 T--AATTTTAATA
*
23850877 T-A-TTTAAAA
1 TAATTTTAATA
23850886 TAATTTTAATA
1 TAATTTTAATA
23850897 TAATTT
1 TAATTT
23850903 ATTATTTTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
9 12 0.24
10 4 0.08
11 16 0.33
12 4 0.08
13 13 0.27
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TAATTTTAATA
Found at i:23851034 original size:18 final size:18
Alignment explanation
Indices: 23851009--23851059 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
23850999 ATATATATAT
23851009 TTAATATTTAAATT-AAA
1 TTAATATTTAAATTCAAA
*
23851026 TTAAATATTATAATTTCAAA
1 TT-AATATT-TAAATTCAAA
*
23851046 TTAATTTTTAAATT
1 TTAATATTTAAATT
23851060 TTTTGTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 2 0.07
18 11 0.39
19 10 0.36
20 5 0.18
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAATATTTAAATTCAAA
Found at i:23851840 original size:18 final size:19
Alignment explanation
Indices: 23851817--23851863 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
23851807 TAGTTCGTGA
23851817 ATTTAATTGA-ATTTTTA-T
1 ATTTAATT-ATATTTTTATT
*
23851835 ATTTAAATATATTTTTATT
1 ATTTAATTATATTTTTATT
23851854 ATTTTAATTA
1 A-TTTAATTA
23851864 ATAAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 1 0.04
18 14 0.58
19 2 0.08
20 7 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTAATTATATTTTTATT
Found at i:23852100 original size:6 final size:6
Alignment explanation
Indices: 23852050--23852106 Score: 53
Period size: 6 Copynumber: 9.3 Consensus size: 6
23852040 AAATTTGATC
* * * *
23852050 AAATTT AATTTT TATTTT AAATTTT AAATTTT AAA-TT AAACTT AAATTT
1 AAATTT AAATTT AAATTT AAA-TTT AAA-TTT AAATTT AAATTT AAATTT
23852099 AAATTT AA
1 AAATTT AA
23852107 TATTATATCA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
5 5 0.11
6 26 0.59
7 13 0.30
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (6 bp):
AAATTT
Found at i:23854286 original size:17 final size:17
Alignment explanation
Indices: 23854243--23854289 Score: 64
Period size: 15 Copynumber: 2.9 Consensus size: 17
23854233 AAATTTTACA
*
23854243 TTTA-ATTATATAT-AT
1 TTTATATTATATTTAAT
23854258 TTTATA-TATATTTAAT
1 TTTATATTATATTTAAT
23854274 TTTATATTATATTTAA
1 TTTATATTATATTTAA
23854290 AATAATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 10 0.36
16 9 0.32
17 9 0.32
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATATTATATTTAAT
Found at i:23855138 original size:2 final size:2
Alignment explanation
Indices: 23855131--23855195 Score: 69
Period size: 2 Copynumber: 33.0 Consensus size: 2
23855121 ATTAAAAAGC
* * * * *
23855131 AT AT AT AT AT AT TT GT AA AG AT AT AT AT AT AT AT AT AT -T TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
23855172 AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
23855196 GCGCATAGGC
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
AT
Found at i:23859399 original size:21 final size:21
Alignment explanation
Indices: 23859375--23859418 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
23859365 TTTGTCAAAG
23859375 TTTTT-AAAATTTTATAAATA
1 TTTTTAAAAATTTTATAAATA
23859395 TTTTTAAAAATTTTATAAATA
1 TTTTTAAAAATTTTATAAATA
23859416 TTT
1 TTT
23859419 AATTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTTTAAAAATTTTATAAATA
Found at i:23859402 original size:10 final size:11
Alignment explanation
Indices: 23859375--23859418 Score: 58
Period size: 10 Copynumber: 4.3 Consensus size: 11
23859365 TTTGTCAAAG
23859375 TTTT-TAAA-A
1 TTTTATAAATA
23859384 TTTTATAAATA
1 TTTTATAAATA
*
23859395 TTTT-TAAAAA
1 TTTTATAAATA
23859405 TTTTATAAATA
1 TTTTATAAATA
23859416 TTT
1 TTT
23859419 AATTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 4 0.13
10 13 0.43
11 13 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTATAAATA
Found at i:23859440 original size:17 final size:16
Alignment explanation
Indices: 23859403--23859449 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
23859393 TATTTTTAAA
*
23859403 AATTTTATAA-ATATTT
1 AATTTT-TAATATTTTT
*
23859419 AATTTTTTATATTTTT
1 AATTTTTAATATTTTT
23859435 ATATTTTTAATATTT
1 A-ATTTTTAATATTT
23859450 AATTAAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 2 0.08
16 12 0.46
17 12 0.46
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
AATTTTTAATATTTTT
Found at i:23860827 original size:17 final size:16
Alignment explanation
Indices: 23860807--23860839 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
23860797 TTTTCTCTCT
23860807 TTTTTTTTAGTTTTTTA
1 TTTTTTTTA-TTTTTTA
23860824 TTTTTTTTATTTTTTA
1 TTTTTTTTATTTTTTA
23860840 ATTAAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (16 bp):
TTTTTTTTATTTTTTA
Found at i:23861541 original size:21 final size:22
Alignment explanation
Indices: 23861515--23861557 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
23861505 AAAATTGATA
*
23861515 TTTTATGTTTAT-TATATTTAT
1 TTTTATGTTTATATAGATTTAT
*
23861536 TTTTATTTTTATATAGATTTAT
1 TTTTATGTTTATATAGATTTAT
23861558 ATTAATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.70
Consensus pattern (22 bp):
TTTTATGTTTATATAGATTTAT
Found at i:23864552 original size:23 final size:23
Alignment explanation
Indices: 23864526--23864586 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
23864516 TTTAATTTTT
*
23864526 TCTTTTAAAAGTTTTAATAAATA
1 TCTTTTAAAAGTTTTAAAAAATA
*
23864549 TCTTTGAAAA-TTTTAAAAAATA
1 TCTTTTAAAAGTTTTAAAAAATA
23864571 T-TTTTAAAAGATTTTA
1 TCTTTTAAAAG-TTTTA
23864587 TTTTTTATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 7 0.21
22 12 0.36
23 14 0.42
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (23 bp):
TCTTTTAAAAGTTTTAAAAAATA
Found at i:23864562 original size:22 final size:22
Alignment explanation
Indices: 23864529--23864586 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
23864519 AATTTTTTCT
* *
23864529 TTTAAAAGTTTTAATAAATATC
1 TTTAAAAATTTTAAAAAATATC
* *
23864551 TTTGAAAATTTTAAAAAATATT
1 TTTAAAAATTTTAAAAAATATC
23864573 TTTAAAAGATTTTA
1 TTTAAAA-ATTTTA
23864587 TTTTTTATGT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 24 0.80
23 6 0.20
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (22 bp):
TTTAAAAATTTTAAAAAATATC
Found at i:23864855 original size:134 final size:130
Alignment explanation
Indices: 23864563--23864858 Score: 320
Period size: 133 Copynumber: 2.2 Consensus size: 130
23864553 TGAAAATTTT
* *
23864563 AAAAAATATTTTTAAAAGATTTTATTTTTTATGTGTGAAACCCACTTCTATCAAATTTATTTTAT
1 AAAAAATATTTTTAAAAGATTTTA-TTTTT-TGCGTGAAACCCACTTCTACCAAATTTATTTTAT
** *
23864628 TTTTTATTTTTTACTGTTTTTACTTTTCTCTTTTTAAAAAAATTTAATAAATATTTTTAAAGTCA
64 TTTTTATTTTTTACCATTTTAACTTTTCTCTTTTTAAAAAAATTTAATAAATATTTTTAAAGTCA
23864693 TA
129 TA
* * *
23864695 AAAATATATTTTTTAAAA-ATTTTATTTTTTGCGTGAGACCTACTTGC-ACCAAACTTTATTTT-
1 AAAAAATA-TTTTTAAAAGATTTTATTTTTTGCGTGAAACCCACTT-CTACCAAA-TTTATTTTA
*
23864757 TTTATTT-TCTTTTTACCATTTATAACTTTT-TCCTTTTGTAAAAAAATATTAA-ATAATGTTTT
63 TTT-TTTAT-TTTTTACCATTT-TAACTTTTCT-CTTTT-TAAAAAAAT-TTAATA-AATATTTT
*
23864819 TTAA-T-ATTA
121 TAAAGTCA-TA
23864828 AAAAAATATATTTTAAAAGATTTTATTTTTT
1 AAAAAATAT-TTTTAAAAGATTTTATTTTTT
23864859 TTGTGTGAAC
Statistics
Matches: 140, Mismatches: 11, Indels: 24
0.80 0.06 0.14
Matches are distributed among these distances:
130 22 0.16
131 28 0.20
132 27 0.19
133 37 0.26
134 26 0.19
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.52
Consensus pattern (130 bp):
AAAAAATATTTTTAAAAGATTTTATTTTTTGCGTGAAACCCACTTCTACCAAATTTATTTTATTT
TTTATTTTTTACCATTTTAACTTTTCTCTTTTTAAAAAAATTTAATAAATATTTTTAAAGTCATA
Found at i:23864930 original size:131 final size:130
Alignment explanation
Indices: 23864563--23864943 Score: 357
Period size: 131 Copynumber: 2.9 Consensus size: 130
23864553 TGAAAATTTT
* * *
23864563 AAAAAATATTTTTAAAAGATTTTATTTTTTATGTGTGAAACCCACTTCTATCAAATTTATTTTAT
1 AAAAAATATTTTTAAAAGATTTTATTTTTTATGTGTG-AACTCACTTATATCAAA-CTATTTT-T
* *
23864628 TTTTTATTTTTTACTGTTTTT-AC-TTTT-CTCTTTTTAAAAAAAT-TTAATAAATATTTTTAAA
63 TTATT-TTTTTTACTCTTTTTAACTTTTTCCT-TTTTTAAAAAAATATTAAT-AATATTTTTAAA
23864689 GTCATA
125 GTCATA
* ** * * ** *
23864695 AAAATATATTTTTTAAAA-ATTTTATTTTTTGCGTGAGACCT-ACTTGCACCAAACTTTATTTTT
1 AAAAAATA-TTTTTAAAAGATTTTATTTTTTATGTGTGAACTCACTTATATCAAAC--TATTTTT
* * * *
23864758 TTATTTTCTTTTTAC-CATTTATAACTTTTTCCTTTTGTAAAAAAATATTAAATAATGTTTTTTA
63 TTA-TTT-TTTTTACTC-TTTTTAACTTTTTCCTTTTTTAAAAAAATATT-AATAATATTTTTAA
23864822 A-T-ATTA
124 AGTCA-TA
* * * **
23864828 AAAAAATATATTTTAAAAGATTTTATTTTTTTTGTGTGAACTCACTTATATGAAACTCTTTTTGC
1 AAAAAATAT-TTTTAAAAGATTTTATTTTTTATGTGTGAACTCACTTATATCAAACTATTTTTTT
23864893 ATTTTTTTTACTCTTTTTAACTTTTTCCTTTTTTAAAAAAATATTTAATAA
65 ATTTTTTTTACTCTTTTTAACTTTTTCCTTTTTTAAAAAAATA-TTAATAA
23864944 AGATTTTCTT
Statistics
Matches: 202, Mismatches: 30, Indels: 35
0.76 0.11 0.13
Matches are distributed among these distances:
130 13 0.06
131 61 0.30
132 33 0.16
133 50 0.25
134 33 0.16
135 12 0.06
ACGTcount: A:0.33, C:0.09, G:0.05, T:0.52
Consensus pattern (130 bp):
AAAAAATATTTTTAAAAGATTTTATTTTTTATGTGTGAACTCACTTATATCAAACTATTTTTTTA
TTTTTTTTACTCTTTTTAACTTTTTCCTTTTTTAAAAAAATATTAATAATATTTTTAAAGTCATA
Found at i:23866398 original size:20 final size:20
Alignment explanation
Indices: 23866375--23866413 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23866365 CAATGTAGCA
*
23866375 CTTTTTATCTATTTTTTTTC
1 CTTTTTAACTATTTTTTTTC
*
23866395 CTTTTTAACTCTTTTTTTT
1 CTTTTTAACTATTTTTTTT
23866414 TCATTTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (20 bp):
CTTTTTAACTATTTTTTTTC
Done.