Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 132 of 147
Found at i:23867733 original size:22 final size:20
Alignment explanation
Indices: 23867702--23867750 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 20
23867692 AATTTTATGA
23867702 AATTTGTTTATGTAT-TTTTACT
1 AATTT-TTTAT-TATATTTTA-T
23867724 ATATTTTTTATTATATTTTAT
1 A-ATTTTTTATTATATTTTAT
23867745 AATTTT
1 AATTTT
23867751 CTTCTTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 5 0.20
21 5 0.20
22 11 0.44
23 4 0.16
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (20 bp):
AATTTTTTATTATATTTTAT
Found at i:23869049 original size:67 final size:67
Alignment explanation
Indices: 23868899--23869049 Score: 194
Period size: 67 Copynumber: 2.3 Consensus size: 67
23868889 CAAAATTTCG
* * * * **
23868899 AAGATTCATAATTTGAAATATTCAATAACTTAACAATCCAACAATCAATAATGTAAATTGCAACT
1 AAGATTCACAATTTGAGATATTCAAGAACTTAACAATCCAACAATCAATAATGCAAATTAAAACT
23868964 CA
66 CA
* * * * * *
23868966 AAGATTCACAATTTGAGATATTTAAGAACTTCATAATCCGACAATCATTAATGCAAGTTAAAACT
1 AAGATTCACAATTTGAGATATTCAAGAACTTAACAATCCAACAATCAATAATGCAAATTAAAACT
23869031 CA
66 CA
23869033 AAGATTCACAATTTGAG
1 AAGATTCACAATTTGAG
23869050 TTCAAATAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
67 72 1.00
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (67 bp):
AAGATTCACAATTTGAGATATTCAAGAACTTAACAATCCAACAATCAATAATGCAAATTAAAACT
CA
Found at i:23869204 original size:16 final size:17
Alignment explanation
Indices: 23869172--23869228 Score: 82
Period size: 16 Copynumber: 3.5 Consensus size: 17
23869162 AAAGATTTGC
*
23869172 AAGAATTTCATATTCGT
1 AAGAATTTCAAATTCGT
23869189 AAGAATTT-AAATTCGT
1 AAGAATTTCAAATTCGT
*
23869205 AAG-ATTTCAATTTCGT
1 AAGAATTTCAAATTCGT
23869221 AAGAATTT
1 AAGAATTT
23869229 GATTCTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
15 4 0.11
16 20 0.56
17 12 0.33
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.40
Consensus pattern (17 bp):
AAGAATTTCAAATTCGT
Found at i:23869597 original size:20 final size:20
Alignment explanation
Indices: 23869572--23869609 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23869562 TATATAAAAT
* *
23869572 TTCAAAGTTTCTCATTTGAG
1 TTCAAAGATTCACATTTGAG
23869592 TTCAAAGATTCACATTTG
1 TTCAAAGATTCACATTTG
23869610 TTAAATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (20 bp):
TTCAAAGATTCACATTTGAG
Found at i:23869663 original size:21 final size:21
Alignment explanation
Indices: 23869651--23869698 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
23869641 AGGTTCTTAT
23869651 TTAAAACTCAAAGATTCTCAC
1 TTAAAACTCAAAGATTCTCAC
* * * *
23869672 TTAAAACTTAACGAATCTCAT
1 TTAAAACTCAAAGATTCTCAC
23869693 TTAAAA
1 TTAAAA
23869699 AAAATTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.31
Consensus pattern (21 bp):
TTAAAACTCAAAGATTCTCAC
Found at i:23869721 original size:14 final size:14
Alignment explanation
Indices: 23869702--23869746 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
23869692 TTTAAAAAAA
*
23869702 ATTTAAAGATTTTT
1 ATTTAAAGATTCTT
23869716 ATTTAAA-A--CTT
1 ATTTAAAGATTCTT
23869727 -TTTAAAGATTCTT
1 ATTTAAAGATTCTT
23869740 ATTTAAA
1 ATTTAAA
23869747 ACTTCTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
10 6 0.23
11 3 0.12
13 4 0.15
14 13 0.50
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (14 bp):
ATTTAAAGATTCTT
Found at i:23869723 original size:24 final size:24
Alignment explanation
Indices: 23869691--23869747 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
23869681 AACGAATCTC
*
23869691 ATTTAAAAAAAATTTAAAGATTTTT
1 ATTT-AAAAAAATTTAAAGATTCTT
***
23869716 ATTTAAAACTTTTTAAAGATTCTT
1 ATTTAAAAAAATTTAAAGATTCTT
23869740 ATTTAAAA
1 ATTTAAAA
23869748 CTTCTTAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (24 bp):
ATTTAAAAAAATTTAAAGATTCTT
Found at i:23869748 original size:24 final size:24
Alignment explanation
Indices: 23869703--23869757 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
23869693 TTAAAAAAAA
*
23869703 TTTAAAGATTTTTATTTAAAACTT
1 TTTAAAGATTCTTATTTAAAACTT
23869727 TTTAAAGATTCTTATTTAAAACTT
1 TTTAAAGATTCTTATTTAAAACTT
*
23869751 CTTAAAG
1 TTTAAAG
23869758 GTTCCCATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.49
Consensus pattern (24 bp):
TTTAAAGATTCTTATTTAAAACTT
Found at i:23871053 original size:19 final size:18
Alignment explanation
Indices: 23871013--23871062 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
23871003 ATTTTTCAAA
23871013 ATTTTCA-TTTTTTTCAC
1 ATTTTCATTTTTTTTCAC
*
23871030 ATTTTCATTTTTTTGTCAT
1 ATTTTCATTTTTTT-TCAC
*
23871049 TTTTTCACTTTTTT
1 ATTTTCA-TTTTTT
23871063 CATTTTCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 7 0.25
18 6 0.21
19 9 0.32
20 6 0.21
ACGTcount: A:0.14, C:0.14, G:0.02, T:0.70
Consensus pattern (18 bp):
ATTTTCATTTTTTTTCAC
Found at i:23871073 original size:19 final size:18
Alignment explanation
Indices: 23871039--23871113 Score: 59
Period size: 18 Copynumber: 4.2 Consensus size: 18
23871029 CATTTTCATT
23871039 TTTTTGTCATTTTTTCAC
1 TTTTTGTCATTTTTTCAC
23871057 TTTTT-TCATTTTCTTTCAC
1 TTTTTGTCA-TTT-TTTCAC
*
23871076 TTCATTT-T--TTTTTTCAT
1 TT--TTTGTCATTTTTTCAC
* *
23871093 TTTTTTTCACTTTTTCAC
1 TTTTTGTCATTTTTTCAC
23871111 TTT
1 TTT
23871114 ACTTTTTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
15 3 0.06
16 1 0.02
17 10 0.21
18 21 0.45
19 8 0.17
21 4 0.09
ACGTcount: A:0.11, C:0.17, G:0.01, T:0.71
Consensus pattern (18 bp):
TTTTTGTCATTTTTTCAC
Found at i:23871087 original size:35 final size:35
Alignment explanation
Indices: 23871048--23871124 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
23871038 TTTTTTGTCA
* *
23871048 TTTTTTCA-CTTTTTTCATTTTCTTTCACTTCATTTT
1 TTTTTTCATCTTTTTTCA-CTT-TTTCACTTCACTTT
* *
23871084 TTTTTTCATTTTTTTTCACTTTTTCACTTTACTTT
1 TTTTTTCATCTTTTTTCACTTTTTCACTTCACTTT
23871119 TTTTTT
1 TTTTTT
23871125 TTTACTTCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 18 0.50
36 10 0.28
37 8 0.22
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.73
Consensus pattern (35 bp):
TTTTTTCATCTTTTTTCACTTTTTCACTTCACTTT
Found at i:23871088 original size:36 final size:36
Alignment explanation
Indices: 23871048--23871125 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
23871038 TTTTTTGTCA
*
23871048 TTTTTTCA-CTTTTTTCATTTTCTTTCACTTCA-TTTT
1 TTTTTTCATCTTTTTTCA-CTT-TTTCACTTCACTTTT
* *
23871084 TTTTTTCATTTTTTTTCACTTTTTCACTTTACTTTT
1 TTTTTTCATCTTTTTTCACTTTTTCACTTCACTTTT
23871120 TTTTTT
1 TTTTTT
23871126 TTACTTCATC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 9 0.24
36 20 0.54
37 8 0.22
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.73
Consensus pattern (36 bp):
TTTTTTCATCTTTTTTCACTTTTTCACTTCACTTTT
Found at i:23883862 original size:14 final size:15
Alignment explanation
Indices: 23883836--23883865 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23883826 AAATTTTTAA
23883836 AAATTATAAAAAAAT
1 AAATTATAAAAAAAT
*
23883851 AAATTAAAAAAAAAT
1 AAATTATAAAAAAAT
23883866 GTTAACTCTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAATTATAAAAAAAT
Found at i:23884222 original size:16 final size:16
Alignment explanation
Indices: 23884193--23884234 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
23884183 TTATTAAACT
23884193 AAAA-AATT-AAATAA
1 AAAATAATTAAAATAA
23884207 AAAATAATTAAAATAA
1 AAAATAATTAAAATAA
*
23884223 AAAATAAATAAA
1 AAAATAATTAAA
23884235 CTATAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 4 0.16
15 4 0.16
16 17 0.68
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAATAATTAAAATAA
Found at i:23884224 original size:27 final size:27
Alignment explanation
Indices: 23884185--23884250 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
23884175 AATATTTTTT
*
23884185 ATTAAACTAAAAAATTAAATAAAAAATA
1 ATTAAAATAAAAAA-TAAATAAAAAATA
**
23884213 ATTAAAATAAAAAATAAATAAACTATA
1 ATTAAAATAAAAAATAAATAAAAAATA
*
23884240 AATAAAATAAA
1 ATTAAAATAAA
23884251 TTTTAAACTT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.62
28 13 0.38
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (27 bp):
ATTAAAATAAAAAATAAATAAAAAATA
Found at i:23886584 original size:9 final size:9
Alignment explanation
Indices: 23886570--23886616 Score: 58
Period size: 9 Copynumber: 5.2 Consensus size: 9
23886560 GAGCCAATGA
23886570 AGGCGGGGG
1 AGGCGGGGG
23886579 AGGCGGGGG
1 AGGCGGGGG
*
23886588 AGGCGGCGG
1 AGGCGGGGG
* *
23886597 CGGCGGCGG
1 AGGCGGGGG
*
23886606 ATGCGGGGG
1 AGGCGGGGG
23886615 AG
1 AG
23886617 AAGATGGGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.11, C:0.17, G:0.70, T:0.02
Consensus pattern (9 bp):
AGGCGGGGG
Found at i:23893394 original size:34 final size:33
Alignment explanation
Indices: 23893338--23893419 Score: 101
Period size: 34 Copynumber: 2.5 Consensus size: 33
23893328 TTTAACGACT
* * **
23893338 TTTTTGGATAAAATGTCATTAAATTTAGCGATA
1 TTTTTGGGTAAAACGTTGTTAAATTTAGCGATA
* *
23893371 TTTTTGGGTATAAACGTTGTTAAATTTAGTGATG
1 TTTTTGGGTA-AAACGTTGTTAAATTTAGCGATA
23893405 TTTTTGGGTAAAACG
1 TTTTTGGGTAAAACG
23893420 CTTAGCAACA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
33 14 0.33
34 28 0.67
ACGTcount: A:0.30, C:0.05, G:0.21, T:0.44
Consensus pattern (33 bp):
TTTTTGGGTAAAACGTTGTTAAATTTAGCGATA
Found at i:23894309 original size:21 final size:21
Alignment explanation
Indices: 23894284--23894325 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23894274 TCACTTTAAA
23894284 TATCAATATCACCAACTTGAG
1 TATCAATATCACCAACTTGAG
* **
23894305 TATCAGTATCATTAACTTGAG
1 TATCAATATCACCAACTTGAG
23894326 AAATAGAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (21 bp):
TATCAATATCACCAACTTGAG
Found at i:23895096 original size:27 final size:28
Alignment explanation
Indices: 23895064--23895119 Score: 105
Period size: 27 Copynumber: 2.0 Consensus size: 28
23895054 TGAAGTATTA
23895064 TTATTAATGAAAAATATCGT-AAACCTT
1 TTATTAATGAAAAATATCGTAAAACCTT
23895091 TTATTAATGAAAAATATCGTAAAACCTT
1 TTATTAATGAAAAATATCGTAAAACCTT
23895119 T
1 T
23895120 ACAAGCTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 20 0.71
28 8 0.29
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.38
Consensus pattern (28 bp):
TTATTAATGAAAAATATCGTAAAACCTT
Found at i:23896122 original size:20 final size:20
Alignment explanation
Indices: 23896085--23896125 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
23896075 TTACTATAAT
**
23896085 TAAATAAAAAAGTTTTAAAA
1 TAAATAAAAAAGAATTAAAA
*
23896105 TAAATAAAAATGAATTAAAA
1 TAAATAAAAAAGAATTAAAA
23896125 T
1 T
23896126 TCATAAATTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
TAAATAAAAAAGAATTAAAA
Found at i:23898831 original size:15 final size:15
Alignment explanation
Indices: 23898813--23898846 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
23898803 TCCCACCTGT
23898813 TTTCATCCATTTAAC
1 TTTCATCCATTTAAC
* *
23898828 TTTCATCTATTTAGC
1 TTTCATCCATTTAAC
23898843 TTTC
1 TTTC
23898847 TTCCTTCGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.24, G:0.03, T:0.53
Consensus pattern (15 bp):
TTTCATCCATTTAAC
Found at i:23899157 original size:17 final size:17
Alignment explanation
Indices: 23899135--23899234 Score: 112
Period size: 17 Copynumber: 5.8 Consensus size: 17
23899125 CTGTTGCAAC
*
23899135 TTACAAACCATGTTTTG
1 TTACAAACCATGTTCTG
*
23899152 TTACAAACCATGTGCTG
1 TTACAAACCATGTTCTG
*
23899169 TTTTCGAAACCATGTTCTG
1 -TTAC-AAACCATGTTCTG
* *
23899188 TTGCAAACCATGTGCTG
1 TTACAAACCATGTTCTG
23899205 TT-CGAAACCATGTTCTG
1 TTAC-AAACCATGTTCTG
*
23899222 TTGCAAACCATGT
1 TTACAAACCATGT
23899235 GCTTGCAAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
16 1 0.01
17 52 0.72
18 7 0.10
19 12 0.17
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (17 bp):
TTACAAACCATGTTCTG
Found at i:23899214 original size:34 final size:35
Alignment explanation
Indices: 23899139--23899237 Score: 164
Period size: 34 Copynumber: 2.8 Consensus size: 35
23899129 TGCAACTTAC
* *
23899139 AAACCATGTTTTGTTACAAACCATGTGCTGTTTTCG
1 AAACCATGTTCTGTTGCAAACCATGTGCTG-TTTCG
23899175 AAACCATGTTCTGTTGCAAACCATGTGCTG-TTCG
1 AAACCATGTTCTGTTGCAAACCATGTGCTGTTTCG
23899209 AAACCATGTTCTGTTGCAAACCATGTGCT
1 AAACCATGTTCTGTTGCAAACCATGTGCT
23899238 TGCAAACCAT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
34 33 0.54
36 28 0.46
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (35 bp):
AAACCATGTTCTGTTGCAAACCATGTGCTGTTTCG
Found at i:23899832 original size:65 final size:66
Alignment explanation
Indices: 23899730--23899860 Score: 153
Period size: 65 Copynumber: 2.0 Consensus size: 66
23899720 TCTCCAAAAA
* *
23899730 AATTGAAGGAGATTATTGAAGGCATTTTTAGTAAAAAATG-CATTGAATAATCCCC-TTC-ATTT
1 AATTGAAGGAGATTATTGAAGGCATTTTTAGCAAAAAACGTC-TTGAATAA-CCCCATTCAATTT
23899792 TTT
64 TTT
* * * *
23899795 AATTGAAAGG-GATTATTTAAGGCGTTTTTGGCCAAAAACGTCTTGAATAACCCCATTCAATTTT
1 AATTG-AAGGAGATTATTGAAGGCATTTTTAGCAAAAAACGTCTTGAATAACCCCATTCAATTTT
23899859 TT
65 TT
23899861 GTAAAGGATT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
64 4 0.07
65 40 0.71
66 12 0.21
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (66 bp):
AATTGAAGGAGATTATTGAAGGCATTTTTAGCAAAAAACGTCTTGAATAACCCCATTCAATTTTT
T
Found at i:23900014 original size:190 final size:188
Alignment explanation
Indices: 23899647--23900074 Score: 545
Period size: 190 Copynumber: 2.3 Consensus size: 188
23899637 ACTAGAAATA
* * * * * *
23899647 CCTTAAATAACCTGATTCAATTTTTTATAAAAGATTATTCAAGGTATTTTCTAGCTAAAAATACC
1 CCTTGAATAACCTCATTCAATTTTTTGTAAAAGATTATTCAAGATATTTTCTAACAAAAAATACC
* * **
23899712 TTGAATAATCTCCAAAAAAATTGAAGGAGATTATTGAAGGCATTTTTAGTAAAAAATGCATTGAA
66 TTGAATAATCTCCAAAAAAATTAAAGGAGATTATTGAAGGCATTTTTAGCAAAAAACACATTGAA
* *
23899777 TAATCCCCTTCATTTTTTAATTGAAAGGGATTATTTAAGGCGTTTTTGGCCAAAAACG
131 TAATCACCTTCATTTTTTAATTGAAAGGGATTATTCAAGGCGTTTTTGGCCAAAAACG
* * * *
23899835 TCTTGAATAACCCCATTCAATTTTTTGTAAAGGATTATTCAAGATATTTTCTAACAAAAAATCCC
1 CCTTGAATAACCTCATTCAATTTTTTGTAAAAGATTATTCAAGATATTTTCTAACAAAAAATACC
* * * * *
23899900 TTGAATATTTTCATAAAAAAATTAAAAGG-GATTATTGAAGGCATTTTTTAGCCAAAAACACCTT
66 TTGAATAATCTC-CAAAAAAATT-AAAGGAGATTATTGAAGGCA-TTTTTAGCAAAAAACACATT
** * * * *
23899964 GAATAAAT-ATTTTCATTTTTTAATTGAAAGGGATTATTCAAGGTGTTTTTGGCTAGAAATG
128 GAAT-AATCACCTTCATTTTTTAATTGAAAGGGATTATTCAAGGCGTTTTTGGCCAAAAACG
* *
23900025 CCTTGAATAACCTTATTCAATTTTTTGTAAAAGATTATTCAAGATGTTTT
1 CCTTGAATAACCTCATTCAATTTTTTGTAAAAGATTATTCAAGATATTTT
23900075 TTGGCCAAAA
Statistics
Matches: 204, Mismatches: 32, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
188 65 0.32
189 23 0.11
190 113 0.55
191 3 0.01
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (188 bp):
CCTTGAATAACCTCATTCAATTTTTTGTAAAAGATTATTCAAGATATTTTCTAACAAAAAATACC
TTGAATAATCTCCAAAAAAATTAAAGGAGATTATTGAAGGCATTTTTAGCAAAAAACACATTGAA
TAATCACCTTCATTTTTTAATTGAAAGGGATTATTCAAGGCGTTTTTGGCCAAAAACG
Found at i:23900131 original size:127 final size:129
Alignment explanation
Indices: 23899960--23900228 Score: 352
Period size: 127 Copynumber: 2.1 Consensus size: 129
23899950 GCCAAAAACA
*
23899960 CCTTGAATAAAT--ATTTTCATTTTTTAATTGAAAGGGATTATTCAAGGTGTTTTTGG-CTAGAA
1 CCTTGAAT-AATCCATTTTCATTTTTTAATTGAAAGAGATTATTCAAGGTGTTTTTGGTC-AGAA
** * * *
23900022 ATGCCTTGAATAACCTTATTCAATTTTTTGTAAAAGATTATTCAAGATGTTTTTTGGC-CAAAAT
64 ATGCCTTGAATAACCCCATTCAATTTTTTGTAAAAGATTATTCAAGATATTTTTTGACAAAAAAT
23900086 G
129 G
*
23900087 CCTTGAATAATCCATTTT-ATTTTTTAGTT-AATAGAGATTATTCAAGGTGTTTTTGGTCAGAAA
1 CCTTGAATAATCCATTTTCATTTTTTAATTGAA-AGAGATTATTCAAGGTGTTTTTGGTCAGAAA
* * ** *
23900150 TGGCTTGAATAACCCCATTTAATTTTTTGTAAGGGATTATTCAAGGTATTTTTTGACAAAAAATG
65 TGCCTTGAATAACCCCATTCAATTTTTTGTAAAAGATTATTCAAGATATTTTTTGACAAAAAATG
*
23900215 CATTGAATAATCCA
1 CCTTGAATAATCCA
23900229 AAAAAAAAAG
Statistics
Matches: 124, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
126 5 0.04
127 94 0.76
128 25 0.20
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (129 bp):
CCTTGAATAATCCATTTTCATTTTTTAATTGAAAGAGATTATTCAAGGTGTTTTTGGTCAGAAAT
GCCTTGAATAACCCCATTCAATTTTTTGTAAAAGATTATTCAAGATATTTTTTGACAAAAAATG
Found at i:23900151 original size:65 final size:63
Alignment explanation
Indices: 23899960--23900228 Score: 234
Period size: 62 Copynumber: 4.2 Consensus size: 63
23899950 GCCAAAAACA
* * *
23899960 CCTTGAATAAAT--ATTTTCATTTTTTAATTGAAAGGGATTATTCAAGGTGTTTTTGGCTAGAAA
1 CCTTGAAT-AATCCATTTTCATTTTTT--GT-AAAGAGATTATTCAAGGTGTTTTTGGCAAGAAA
23900023 TG
62 TG
* *
23900025 CCTTGAATAA-CC-TTATTCAATTTTTTGTAAA-AGATTATTCAAGATGTTTTTTGGCCA-AAAT
1 CCTTGAATAATCCATT-TTC-ATTTTTTGTAAAGAGATTATTCAAGGTG-TTTTTGGCAAGAAAT
23900086 G
63 G
23900087 CCTTGAATAATCCATTTT-ATTTTTTAGTTAATAGAGATTATTCAAGGTGTTTTTGGTC-AGAAA
1 CCTTGAATAATCCATTTTCATTTTTT-G-TAA-AGAGATTATTCAAGGTGTTTTTGG-CAAGAAA
23900150 TG
62 TG
* * * * * * *
23900152 GCTTGAATAACCCCA-TTTAATTTTTTGT-AAGGGATTATTCAAGGTATTTTTTGACAAAAAATG
1 CCTTGAATAA-TCCATTTTCATTTTTTGTAAAGAGATTATTCAAGGT-GTTTTTGGCAAGAAATG
*
23900215 CATTGAATAATCCA
1 CCTTGAATAATCCA
23900229 AAAAAAAAAG
Statistics
Matches: 173, Mismatches: 14, Indels: 37
0.77 0.06 0.17
Matches are distributed among these distances:
61 7 0.04
62 48 0.28
63 40 0.23
64 17 0.10
65 44 0.25
66 17 0.10
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (63 bp):
CCTTGAATAATCCATTTTCATTTTTTGTAAAGAGATTATTCAAGGTGTTTTTGGCAAGAAATG
Found at i:23903791 original size:37 final size:37
Alignment explanation
Indices: 23903720--23903792 Score: 92
Period size: 37 Copynumber: 2.0 Consensus size: 37
23903710 TAATCCATAC
* **
23903720 AAAAAATTTTGGAAGGGATTATTAAAGGTGTTTTTGG
1 AAAAAATTTTGGAAAGGATTATTAAAGGCATTTTTGG
* * *
23903757 AAAAATTTTTGGAAAGGATTATTGAATGCATTTTTG
1 AAAAAATTTTGGAAAGGATTATTAAAGGCATTTTTG
23903793 TCCAAAAACG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.36, C:0.01, G:0.23, T:0.40
Consensus pattern (37 bp):
AAAAAATTTTGGAAAGGATTATTAAAGGCATTTTTGG
Found at i:23907184 original size:27 final size:28
Alignment explanation
Indices: 23907130--23907184 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
23907120 CCTAAATGAC
* *
23907130 AAATATAAATATATCATTCAATTAATTT
1 AAATATAAATATATCATTAAAATAATTT
23907158 AAATATTAAATA-AT-ATTAAAATAATTT
1 AAATA-TAAATATATCATTAAAATAATTT
23907185 TTAACTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 11 0.46
28 7 0.29
29 6 0.25
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (28 bp):
AAATATAAATATATCATTAAAATAATTT
Found at i:23907981 original size:28 final size:26
Alignment explanation
Indices: 23907934--23907987 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 26
23907924 TTTAATTTAA
* *
23907934 AATAATAAAATAAAATAATTATATTT
1 AATAATAAAATAAAAAAATTAAATTT
*
23907960 AATAATAGCAATAAAACAAATTAAATTT
1 AATAATA-AAATAAAA-AAATTAAATTT
23907988 TAATTAAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.30
27 7 0.30
28 9 0.39
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (26 bp):
AATAATAAAATAAAAAAATTAAATTT
Found at i:23908081 original size:30 final size:32
Alignment explanation
Indices: 23908047--23908124 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 32
23908037 TACAAATGAA
* *
23908047 ATCAAATCAAATCCAAC-TACATTAA-ATTTT
1 ATCAAATGAAATCAAACATACATTAATATTTT
*
23908077 ATCAAATGAAATCAAACATGCATTAATATTTT
1 ATCAAATGAAATCAAACATACATTAATATTTT
*
23908109 ACCAAATGAAATCAAA
1 ATCAAATGAAATCAAA
23908125 TGAAATCATA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
30 15 0.36
31 7 0.17
32 20 0.48
ACGTcount: A:0.50, C:0.17, G:0.04, T:0.29
Consensus pattern (32 bp):
ATCAAATGAAATCAAACATACATTAATATTTT
Found at i:23908788 original size:24 final size:25
Alignment explanation
Indices: 23908756--23908803 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
23908746 TTTTTTTTTG
* * *
23908756 AATTATATTTTTAGTTATTAATATT
1 AATTATATTTATAATCATTAATATT
23908781 AATT-TATTTATAATCATTAATAT
1 AATTATATTTATAATCATTAATAT
23908804 GATATGGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (25 bp):
AATTATATTTATAATCATTAATATT
Found at i:23910012 original size:127 final size:124
Alignment explanation
Indices: 23909859--23910297 Score: 402
Period size: 127 Copynumber: 3.5 Consensus size: 124
23909849 CCTCATCCCA
* * *
23909859 AAATTTTT-TGTAT-GATTTATTAAAGGCATTTTTAGCTAAAAATGCTTTCAATAATCCTCTCAT
1 AAATTTTTATG-ATGGA-TTATTGAAGGCATTTTTAGCTAAAAATACCTTCAATAATCCTCTCAT
* * * *
23909922 AACTTTTTATGGATGATTATTTAAGGCATTTTAGGCTAAAAATACCTTCAATAATCCCCTAAAT
64 AAATTTTTATGGA-GATTATTAAAGGCATTTT-GACCAAAAATACCTTCAATAATCCCCT-AAT
* ** *
23909986 AAATTTTTATGATGGATTATTGAAGGCATTTTTTGCTAAAAATATTTTCAATAATCTCTTTCA-A
1 AAATTTTTATGATGGATTATTGAAGGCATTTTTAGCTAAAAATACCTTCAATAATC-CTCTCATA
* * * * *
23910050 AATTTTTATGAAGGATTATTGAAGGCATTTTTGACCAAAAATGCCTTCAATAATCCTCTCAT
65 AATTTTTATGGA-GATTATTAAAGGCA-TTTTGACCAAAAATACCTTCAATAATCCCCTAAT
* * * * * *
23910112 AAATTTTTATAAAGGGATTATTGAAGGTA-TTTTAGGTCAAAAATACCTTCAATGATCCCCTCAA
1 AAATTTTTAT-GATGGATTATTGAAGGCATTTTTAGCT-AAAAATACCTTCAATAATCCTCTC-A
* * * **
23910176 TAAATTTTTTATGAGAGATTATTAAAGGCATTTTGACCAAAAATACTTTTAATAATCACCTTCT
63 TAAA-TTTTTATG-GAGATTATTAAAGGCATTTTGACCAAAAATACCTTCAATAATCCCCTAAT
* * * * * * *
23910240 AACTTTTTATGAGAGGAATATTGAAAGC-GTTTTAGGCAAAAAATGCCTTCAATAATCC
1 AAATTTTTATGA-TGGATTATTGAAGGCATTTTTA-GCTAAAAATACCTTCAATAATCC
23910298 ATATAAAAAA
Statistics
Matches: 256, Mismatches: 43, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
126 21 0.08
127 126 0.49
128 86 0.34
129 22 0.09
130 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (124 bp):
AAATTTTTATGATGGATTATTGAAGGCATTTTTAGCTAAAAATACCTTCAATAATCCTCTCATAA
ATTTTTATGGAGATTATTAAAGGCATTTTGACCAAAAATACCTTCAATAATCCCCTAAT
Found at i:23910016 original size:64 final size:63
Alignment explanation
Indices: 23909859--23910363 Score: 364
Period size: 64 Copynumber: 7.9 Consensus size: 63
23909849 CCTCATCCCA
* * * * *
23909859 AAATTTTT-TGTAT-GATTTATTAAAGGCATTTTTA-GCTAAAAATGCTTTCAATAATCCTCTCA
1 AAATTTTTATG-ATGGA-TTATTGAAGGCA-TTTTAGGCTAAAAATACCTTCAATAATCCCCTAA
23909921 T
63 T
* *
23909922 AACTTTTTATGGAT-GATTATTTAAGGCATTTTAGGCTAAAAATACCTTCAATAATCCCCTAAAT
1 AAATTTTTAT-GATGGATTATTGAAGGCATTTTAGGCTAAAAATACCTTCAATAATCCCCT-AAT
** ** ** *
23909986 AAATTTTTATGATGGATTATTGAAGGCATTTTTTGCTAAAAATATTTTCAATAATCTCTTTCA-
1 AAATTTTTATGATGGATTATTGAAGGCATTTTAGGCTAAAAATACCTTCAATAATC-CCCTAAT
* * * * * * *
23910049 AAATTTTTATGAAGGATTATTGAAGGCATTTTTGACCAAAAATGCCTTCAATAATCCTCTCAT
1 AAATTTTTATGATGGATTATTGAAGGCATTTTAGGCTAAAAATACCTTCAATAATCCCCTAAT
* * * *
23910112 AAATTTTTATAAAGGGATTATTGAAGGTATTTTAGG-TCAAAAATACCTTCAATGATCCCCTCAA
1 AAATTTTTAT-GATGGATTATTGAAGGCATTTTAGGCT-AAAAATACCTTCAATAATCCCCT-AA
23910176 T
63 T
* * * * * * **
23910177 AAATTTTTTATGA-GAGATTATTAAAGGCATTTT-GACCAAAAATACTTTTAATAATCACCTTCT
1 AAA-TTTTTATGATG-GATTATTGAAGGCATTTTAGGCTAAAAATACCTTCAATAATCCCCTAAT
* * * * * * * ** *
23910240 AACTTTTTATGAGAGGAATATTGAAAGCGTTTTAGGCAAAAAATGCCTTCAATAATCCATATAAA
1 AAATTTTTATGA-TGGATTATTGAAGGCATTTTAGGCTAAAAATACCTTCAATAATCC-CCTAAT
* * * * *
23910305 AAATTTTGT-TGAAGGGATTATTGAATGTATTTTTA-ACAAAAAATACCTTCAATAATCCC
1 AAATTTT-TATG-ATGGATTATTGAAGGCA-TTTTAGGCTAAAAATACCTTCAATAATCCC
23910364 ATTCAATTTT
Statistics
Matches: 353, Mismatches: 69, Indels: 39
0.77 0.15 0.08
Matches are distributed among these distances:
62 19 0.05
63 120 0.34
64 134 0.38
65 66 0.19
66 14 0.04
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (63 bp):
AAATTTTTATGATGGATTATTGAAGGCATTTTAGGCTAAAAATACCTTCAATAATCCCCTAAT
Found at i:23910247 original size:128 final size:129
Alignment explanation
Indices: 23909888--23910362 Score: 361
Period size: 127 Copynumber: 3.7 Consensus size: 129
23909878 TTAAAGGCAT
* * * * * * * *
23909888 TTTTA-GCTAAAAATGCTTTCAATAATCCTCTC-AT-AACTTTTTATGGATGATTATTTAAGGCA
1 TTTTAGGCAAAAAATACCTTCAATAATCCCCTCAATAAATTTTTTATGAAGGATTATTAAAGGCA
* * * * * * *
23909950 TTTTAGGCTAAAAATACCTTCAATAATCCCCTAAATAAATTTTTAT--GATGGATTATTGAAGGC
66 TTTTTGACCAAAAATACCTTCAATAATCCTCT-CATAAATTTTTATAAGA-GGAATATTGAAAGC
23910013 A
129 A
** * ** ** *
23910014 TTTTTTGCTAAAAATATTTTCAATAATCTCTTTC-A-AAA-TTTTTATGAAGGATTATTGAAGGC
1 TTTTAGGCAAAAAATACCTTCAATAATC-CCCTCAATAAATTTTTTATGAAGGATTATTAAAGGC
* * * *
23910076 ATTTTTGACCAAAAATGCCTTCAATAATCCTCTCATAAATTTTTATAA-AGGGATTATTGAAGGT
65 ATTTTTGACCAAAAATACCTTCAATAATCCTCTCATAAATTTTTATAAGA-GGAATATTGAAAGC
23910140 A
129 A
*
23910141 TTTTAGGTC-AAAAATACCTTCAATGATCCCCTCAATAAATTTTTTATG-AGAGATTATTAAAGG
1 TTTTAGG-CAAAAAATACCTTCAATAATCCCCTCAATAAATTTTTTATGAAG-GATTATTAAAGG
* * * *
23910204 CA-TTTTGACCAAAAATACTTTTAATAATCAC-CTTC-TAACTTTTTATGAGAGGAATATTGAAA
64 CATTTTTGACCAAAAATACCTTCAATAATC-CTC-TCATAAATTTTTATAAGAGGAATATTGAAA
*
23910266 GCG
127 GCA
* * * * * * *
23910269 TTTTAGGCAAAAAATGCCTTCAATAAT-CCATATAAAAAATTTTGT-TGAAGGGATTATTGAATG
1 TTTTAGGCAAAAAATACCTTCAATAATCCCCT-CAATAAATTTTTTATGAA-GGATTATTAAAGG
* * *
23910332 TATTTTTAACAAAAAATACCTTCAATAATCC
64 CATTTTTGACCAAAAATACCTTCAATAATCC
23910363 CATTCAATTT
Statistics
Matches: 286, Mismatches: 45, Indels: 34
0.78 0.12 0.09
Matches are distributed among these distances:
126 19 0.07
127 112 0.39
128 106 0.37
129 49 0.17
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (129 bp):
TTTTAGGCAAAAAATACCTTCAATAATCCCCTCAATAAATTTTTTATGAAGGATTATTAAAGGCA
TTTTTGACCAAAAATACCTTCAATAATCCTCTCATAAATTTTTATAAGAGGAATATTGAAAGCA
Found at i:23910932 original size:49 final size:51
Alignment explanation
Indices: 23910879--23910999 Score: 165
Period size: 57 Copynumber: 2.3 Consensus size: 51
23910869 GAAAGTTAAT
*
23910879 ATTAATAATAAAA-A-TTACGAGTAAATAATGATCTAACAATGATAAGTTG
1 ATTAATATTAAAATACTTACGAGTAAATAATGATCTAACAATGATAAGTTG
23910928 ATTAATATTAAAATATTTTATCTTACGAGTAAATAATGATCTAACAATGATAAGTTG
1 ATTAATATT-AAA-A---TA-CTTACGAGTAAATAATGATCTAACAATGATAAGTTG
23910985 ATTAATATTAAAATA
1 ATTAATATTAAAATA
23911000 TTTTATCTTG
Statistics
Matches: 63, Mismatches: 1, Indels: 13
0.82 0.01 0.17
Matches are distributed among these distances:
49 8 0.13
50 3 0.05
51 1 0.02
52 2 0.03
55 2 0.03
56 3 0.05
57 44 0.70
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.36
Consensus pattern (51 bp):
ATTAATATTAAAATACTTACGAGTAAATAATGATCTAACAATGATAAGTTG
Found at i:23910959 original size:57 final size:57
Alignment explanation
Indices: 23910893--23911008 Score: 232
Period size: 57 Copynumber: 2.0 Consensus size: 57
23910883 ATAATAAAAA
23910893 TTACGAGTAAATAATGATCTAACAATGATAAGTTGATTAATATTAAAATATTTTATC
1 TTACGAGTAAATAATGATCTAACAATGATAAGTTGATTAATATTAAAATATTTTATC
23910950 TTACGAGTAAATAATGATCTAACAATGATAAGTTGATTAATATTAAAATATTTTATC
1 TTACGAGTAAATAATGATCTAACAATGATAAGTTGATTAATATTAAAATATTTTATC
23911007 TT
1 TT
23911009 GCCATTAACA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (57 bp):
TTACGAGTAAATAATGATCTAACAATGATAAGTTGATTAATATTAAAATATTTTATC
Found at i:23911778 original size:14 final size:13
Alignment explanation
Indices: 23911756--23911797 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
23911746 ATCTTTAATG
23911756 AAATATAAATTAT
1 AAATATAAATTAT
23911769 AAATTATAAA-T-T
1 AAA-TATAAATTAT
23911781 AAATATAAATTAAT
1 AAATATAAATT-AT
23911795 AAA
1 AAA
23911798 ATATTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
11 6 0.24
12 5 0.20
13 4 0.16
14 10 0.40
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAATATAAATTAT
Found at i:23913810 original size:22 final size:22
Alignment explanation
Indices: 23913758--23913815 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
23913748 GAACTTTGCA
*
23913758 GAAACAGA-AGAAAAATGAGAG
1 GAAACAGATCGAAAAATGAGAG
** *
23913779 GAAATTGATCGAAAAATGAGGG
1 GAAACAGATCGAAAAATGAGAG
*
23913801 GAACCAGATCGAAAA
1 GAAACAGATCGAAAA
23913816 GGAAACGAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 6 0.21
22 23 0.79
ACGTcount: A:0.53, C:0.09, G:0.28, T:0.10
Consensus pattern (22 bp):
GAAACAGATCGAAAAATGAGAG
Found at i:23914125 original size:658 final size:658
Alignment explanation
Indices: 23912867--23914127 Score: 1888
Period size: 656 Copynumber: 1.9 Consensus size: 658
23912857 CATAAAAAAT
* * *
23912867 AAATCTCGTGACTGCTAATATACAGTTTCCATCTTACGTAATAAAACATGAATTTTTAAACTAAT
1 AAATCTCGTGACAGCAAATATACAGTTTCCATCTTACCTAATAAAACATGAATTTTTAAACTAAT
23912932 ATTGTCATAGCAATTAATAGAAAGTAGCAACACCATAATTCATCAGAATAAGCAAGAAAACTCTA
66 ATTGTCATAGCAATTAATAGAAAGTAGCAACACCATAATTCATCAGAATAAGCAAGAAAACTCTA
* * *
23912997 ACCATTTTTTACCACCTGGGAGCCACATGGAATTGGCAGCACTGTACTTGTAGGGATTTTAGGGA
131 ACCATTTTTTACCACCTGGGAGCCACAAGGAATTGGCAGCACTATACTTGTAAGGATTTTAGGGA
* * *
23913062 TTCGACCCCAAATGAAAGAAATCAGATTGGGACTTTGCAGAAACAGAACAAAAGGAGAAGAAATT
196 TTCGACCCAAAATGAAAGAAATCAGATTGGAACTTTGCAGAAACAGAAAAAAAGGAGAAGAAATT
* *
23913127 GATCGAAAAATGAGAGGAACCAGATGAGAAAAAAAAAAGGAATCGACAGAAAATGTGAGGAATTT
261 GATCGAAAAATGAGAGGAACCAGATGAGAAAAAAAAAACGAATCGACAGAAAATGTGAGGAATTC
* * ** *
23913192 GACCCAAAATAAGAGGATTCTGGGAAGGTGCAGGAGGAGGAAAGAAAAACGAAAATGGCAGAAAG
326 GACCCAAAATAAGAGGATTCTAGAAAGACGCAGGACGAGGAAAGAAAAACGAAAATGGCAGAAAG
*
23913257 GGGTTGGTGTTTGAAATTTAGGAGAAATATAGCGATATTTTTTTTTATAAAAAGGCCACTAAATT
391 GGGTTGGTGTTTGAAATTTAGGAGAAATATAGCGATATTTTATTTTATAAAAAGGCCACTAAATT
* * * * * * *
23913322 CTTGAATTTAGAGGCGTTTTTATTTAAAAACGTCCCTATACAAAAATAAAATAGTGCGTTTCTAA
456 CTTAAACTTAGAGGCATTTTCATTTAAAAACGTCCCTATACAAAAACAAAACAATGCGTTTCTAA
* * *
23913387 TTAGGGGAAACTATTTAGCATCATTTACACTATAAATGCTATTAAGTTTCTAAAAATCAAGGCAT
521 TTAGGAGAAACTATTTAGCATCAGTTACACTATAAATGCTACTAAGTTTCTAAAAATCAAGGCAT
*
23913452 ATAGTGGCCTTTTTTTTTTTTTTTTTTAATAAAACTGCTACTAAAACAAATATGTTGCATTTCTT
586 ATAGCGGCCTTTTTTTTTTTTTTTTTTAATAAAACTGCTACTAAAACAAATATGTTGCATTTCTT
23913517 TGTTCAAA
651 TGTTCAAA
23913525 AAATCTCGTGACAGCAAATATACAGTTTCCATCTTACCTAATAAAACATGAATTTTTAAACTAAT
1 AAATCTCGTGACAGCAAATATACAGTTTCCATCTTACCTAATAAAACATGAATTTTTAAACTAAT
* *
23913590 ATTGTCATAGCAATTAATAGAAAGTAGCAACACCATAATTTATCAGAATAAGCAAGAGAACTCTA
66 ATTGTCATAGCAATTAATAGAAAGTAGCAACACCATAATTCATCAGAATAAGCAAGAAAACTCTA
* * * * * *
23913655 ACC-TTTTTTCCCACCTGGGAGCCATAAGGAATTGGCGGTAGTATACTTGTAAGGATTTTCGGGA
131 ACCATTTTTTACCACCTGGGAGCCACAAGGAATTGGCAGCACTATACTTGTAAGGATTTTAGGGA
* * * *
23913719 TTCGACCCAAAATGGAAGAAATCATATTGGAACTTTGCAGAAACAGAAGAAAAATGAGAGGAAAT
196 TTCGACCCAAAATGAAAGAAATCAGATTGGAACTTTGCAGAAACAGAA-AAAAAGGAGAAGAAAT
* * ** *
23913784 TGATCGAAAAATGAGGGGAACCAGAT-CG-AAAAGGAAACGAATCGGCAGAAAATGTGAGGAATT
260 TGATCGAAAAATGAGAGGAACCAGATGAGAAAAAAAAAACGAATCGACAGAAAATGTGAGGAATT
* * *
23913847 CGACCTAAAATAAGAGGATTCTAGAAAGACGCATGACGAGGAAGGAAAAACGAAAATGGCAGAAA
325 CGACCCAAAATAAGAGGATTCTAGAAAGACGCAGGACGAGGAAAGAAAAACGAAAATGGCAGAAA
* * * * * *
23913912 GGTGTCTGGTGTTTGAAATTTAGTAGAAATTTAGCGGTA-TTTATTTTA-AAGAAATGCTACTAA
390 GGGGT-TGGTGTTTGAAATTTAGGAGAAATATAGCGATATTTTATTTTATAA-AAAGGCCACTAA
*
23913975 ATTCTTAAACTTAGAGGCATTTTCATTTAAAAATG-CCTGCTATACAAAAACAAAACAATGCGTT
453 ATTCTTAAACTTAGAGGCATTTTCATTTAAAAACGTCC--CTATACAAAAACAAAACAATGCGTT
* * * *
23914039 TCTAATTAGGAGAAACTATTTAGCGTCGGTTA-GCTATAAATGCTACTAAGTTTCTAACAATCAA
516 TCTAATTAGGAGAAACTATTTAGCATCAGTTACACTATAAATGCTACTAAGTTTCTAAAAATCAA
*
23914103 GGCATATAGCGGCATTTTTTTTTTT
581 GGCATATAGCGGCCTTTTTTTTTTT
23914128 AATAAAAATG
Statistics
Matches: 538, Mismatches: 60, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
655 4 0.01
656 191 0.36
657 177 0.33
658 166 0.31
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (658 bp):
AAATCTCGTGACAGCAAATATACAGTTTCCATCTTACCTAATAAAACATGAATTTTTAAACTAAT
ATTGTCATAGCAATTAATAGAAAGTAGCAACACCATAATTCATCAGAATAAGCAAGAAAACTCTA
ACCATTTTTTACCACCTGGGAGCCACAAGGAATTGGCAGCACTATACTTGTAAGGATTTTAGGGA
TTCGACCCAAAATGAAAGAAATCAGATTGGAACTTTGCAGAAACAGAAAAAAAGGAGAAGAAATT
GATCGAAAAATGAGAGGAACCAGATGAGAAAAAAAAAACGAATCGACAGAAAATGTGAGGAATTC
GACCCAAAATAAGAGGATTCTAGAAAGACGCAGGACGAGGAAAGAAAAACGAAAATGGCAGAAAG
GGGTTGGTGTTTGAAATTTAGGAGAAATATAGCGATATTTTATTTTATAAAAAGGCCACTAAATT
CTTAAACTTAGAGGCATTTTCATTTAAAAACGTCCCTATACAAAAACAAAACAATGCGTTTCTAA
TTAGGAGAAACTATTTAGCATCAGTTACACTATAAATGCTACTAAGTTTCTAAAAATCAAGGCAT
ATAGCGGCCTTTTTTTTTTTTTTTTTTAATAAAACTGCTACTAAAACAAATATGTTGCATTTCTT
TGTTCAAA
Found at i:23914303 original size:20 final size:20
Alignment explanation
Indices: 23914248--23914303 Score: 51
Period size: 20 Copynumber: 2.9 Consensus size: 20
23914238 AAAATATATT
*
23914248 TTTAGTGACATTTT-TAAAA
1 TTTAATGACATTTTATAAAA
* * * * *
23914267 ATAAATGCCGTTATATAAAA
1 TTTAATGACATTTTATAAAA
23914287 TTTAATGACATTTTATA
1 TTTAATGACATTTTATA
23914304 TATAAATCTT
Statistics
Matches: 25, Mismatches: 11, Indels: 1
0.68 0.30 0.03
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (20 bp):
TTTAATGACATTTTATAAAA
Found at i:23916186 original size:41 final size:41
Alignment explanation
Indices: 23916129--23916212 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
23916119 TTATGGCTAG
23916129 TAGTAACATGAAATTAATATGGTGAATATATTGGTATGATT
1 TAGTAACATGAAATTAATATGGTGAATATATTGGTATGATT
*
23916170 TAGTAGCATGAAATTAATATGGTGAATATATTGGTATGATT
1 TAGTAACATGAAATTAATATGGTGAATATATTGGTATGATT
23916211 TA
1 TA
23916213 TTTGTGAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.38, C:0.02, G:0.20, T:0.39
Consensus pattern (41 bp):
TAGTAACATGAAATTAATATGGTGAATATATTGGTATGATT
Found at i:23925267 original size:16 final size:16
Alignment explanation
Indices: 23925246--23925277 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23925236 TTTTGATTTA
23925246 ATTTTTAATTTTTATT
1 ATTTTTAATTTTTATT
*
23925262 ATTTTTAGTTTTTATT
1 ATTTTTAATTTTTATT
23925278 GTTATTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (16 bp):
ATTTTTAATTTTTATT
Found at i:23925282 original size:22 final size:23
Alignment explanation
Indices: 23925242--23925287 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
23925232 AATTTTTTGA
*
23925242 TTTAATTTTTAATTTTTATTATT
1 TTTAATTTTTAATTGTTATTATT
*
23925265 TTTAGTTTTT-ATTGTTATTATT
1 TTTAATTTTTAATTGTTATTATT
23925287 T
1 T
23925288 ATGCATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (23 bp):
TTTAATTTTTAATTGTTATTATT
Found at i:23925798 original size:29 final size:30
Alignment explanation
Indices: 23925728--23925799 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
23925718 CTTTTTTTCA
* * * *
23925728 TAAAGTAAGATAAAATTTAACTAAAAAGTGT
1 TAAA-TAAAATAAAACTTAACTAAAAACTAT
23925759 TAAATAAAATAAAACTTAACT-AAAACTAT
1 TAAATAAAATAAAACTTAACTAAAAACTAT
23925788 T-AATAATAATAA
1 TAAATAA-AATAA
23925800 TAAAAATATG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 5 0.14
29 12 0.33
30 15 0.42
31 4 0.11
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (30 bp):
TAAATAAAATAAAACTTAACTAAAAACTAT
Found at i:23929647 original size:4 final size:4
Alignment explanation
Indices: 23929638--23929663 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
23929628 AATGTTAGTA
23929638 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
23929664 TCAAGCGTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:23931440 original size:8 final size:8
Alignment explanation
Indices: 23931429--23931568 Score: 51
Period size: 8 Copynumber: 17.5 Consensus size: 8
23931419 GGATTTTTGA
23931429 GTTTTAAG
1 GTTTTAAG
*
23931437 G-TTTCAG
1 GTTTTAAG
23931444 GATTTTAA-
1 G-TTTTAAG
*
23931452 GATTT-AG
1 GTTTTAAG
*
23931459 TGTTTTAAT
1 -GTTTTAAG
23931468 GTTTT-AG
1 GTTTTAAG
* *
23931475 CATTTTAGG
1 -GTTTTAAG
23931484 GTTTT-AG
1 GTTTTAAG
*
23931491 GGTTTAACG
1 GTTTTAA-G
* *
23931500 ATTTTAAA
1 GTTTTAAG
*
23931508 GTTTTGAGG
1 GTTTT-AAG
23931517 GTTTTAAG
1 GTTTTAAG
*
23931525 GTTTTAGG
1 GTTTTAAG
23931533 GTTTTGAAG
1 GTTTT-AAG
* *
23931542 ATTTTAGG
1 GTTTTAAG
*
23931550 GCTTTGAA-
1 G-TTTTAAG
23931558 -TTTTAAG
1 GTTTTAAG
23931565 GTTT
1 GTTT
23931569 CGAAGTTTTA
Statistics
Matches: 92, Mismatches: 26, Indels: 28
0.63 0.18 0.19
Matches are distributed among these distances:
6 6 0.07
7 15 0.16
8 43 0.47
9 28 0.30
ACGTcount: A:0.23, C:0.03, G:0.25, T:0.49
Consensus pattern (8 bp):
GTTTTAAG
Found at i:23931495 original size:24 final size:24
Alignment explanation
Indices: 23931454--23931537 Score: 64
Period size: 24 Copynumber: 3.5 Consensus size: 24
23931444 GATTTTAAGA
* **
23931454 TTTAGTGTTTTAATGTTTTAGCAT
1 TTTAGGGTTTTAGGGTTTTAGCAT
*
23931478 TTTAGGGTTTTAGGG-TTTAACGAT
1 TTTAGGGTTTTAGGGTTTTAGC-AT
** *
23931502 TTTAAAGTTTTGAGGGTTTTAAG-GT
1 TTTAGGGTTTT-AGGGTTTT-AGCAT
23931527 TTTAGGGTTTT
1 TTTAGGGTTTT
23931538 GAAGATTTTA
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
23 5 0.11
24 23 0.50
25 14 0.30
26 3 0.07
27 1 0.02
ACGTcount: A:0.20, C:0.02, G:0.25, T:0.52
Consensus pattern (24 bp):
TTTAGGGTTTTAGGGTTTTAGCAT
Found at i:23931523 original size:17 final size:16
Alignment explanation
Indices: 23931477--23931588 Score: 82
Period size: 16 Copynumber: 6.9 Consensus size: 16
23931467 TGTTTTAGCA
**
23931477 TTTTAGGGTTTTAGGG
1 TTTTAGGGTTTTAAAG
* * *
23931493 TTTAACGATTTTAAAG
1 TTTTAGGGTTTTAAAG
*
23931509 TTTTGAGGGTTTTAAGG
1 TTTT-AGGGTTTTAAAG
*
23931526 TTTTAGGGTTTTGAAG
1 TTTTAGGGTTTTAAAG
* *
23931542 ATTTTAGGGCTTTGAA-
1 -TTTTAGGGTTTTAAAG
* **
23931558 TTTTAAGGTTTCGAAG
1 TTTTAGGGTTTTAAAG
*
23931574 TTTTAGGGATTTAAA
1 TTTTAGGGTTTTAAA
23931589 TTCTTGCGAT
Statistics
Matches: 74, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
15 12 0.16
16 35 0.47
17 27 0.36
ACGTcount: A:0.24, C:0.03, G:0.27, T:0.46
Consensus pattern (16 bp):
TTTTAGGGTTTTAAAG
Found at i:23931536 original size:25 final size:25
Alignment explanation
Indices: 23931476--23931539 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
23931466 ATGTTTTAGC
23931476 ATTTTAGGGTTTT-AGGGTTTAACG
1 ATTTTAGGGTTTTGAGGGTTTAACG
**
23931500 ATTTTAAAGTTTTGAGGGTTTTAA-G
1 ATTTTAGGGTTTTGAGGG-TTTAACG
*
23931525 GTTTTAGGGTTTTGA
1 ATTTTAGGGTTTTGA
23931540 AGATTTTAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
24 11 0.33
25 17 0.52
26 5 0.15
ACGTcount: A:0.22, C:0.02, G:0.28, T:0.48
Consensus pattern (25 bp):
ATTTTAGGGTTTTGAGGGTTTAACG
Found at i:23931568 original size:32 final size:31
Alignment explanation
Indices: 23931506--23931590 Score: 89
Period size: 31 Copynumber: 2.6 Consensus size: 31
23931496 AACGATTTTA
* * * *
23931506 AAGTTTTGAGGGTTTTAAGGTTTTAGGGTTTTG
1 AAGTTTT-AGGGATTTAA-ATTTTAAGGTTTCG
* *
23931539 AAGATTTTAGGGCTTTGAATTTTAAGGTTTCG
1 AAG-TTTTAGGGATTTAAATTTTAAGGTTTCG
23931571 AAGTTTTAGGGATTTAAATT
1 AAGTTTTAGGGATTTAAATT
23931591 CTTGCGATGT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
31 15 0.34
32 14 0.32
33 11 0.25
34 4 0.09
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.46
Consensus pattern (31 bp):
AAGTTTTAGGGATTTAAATTTTAAGGTTTCG
Found at i:23932022 original size:7 final size:6
Alignment explanation
Indices: 23931995--23932073 Score: 54
Period size: 6 Copynumber: 12.5 Consensus size: 6
23931985 AATTTTACTA
* * *
23931995 TTATTT TTACTT TT-TTT TTATTT ATTATCTA TTATATT TTAGCTTT TCATTT
1 TTATTT TTATTT TTATTT TTATTT -TTAT-TT TTAT-TT TTA--TTT TTATTT
*
23932047 CTTATTT TT-TTA TTATTT TTATTT TTA
1 -TTATTT TTATTT TTATTT TTATTT TTA
23932074 GGAATATTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
5 8 0.14
6 26 0.46
7 17 0.30
8 5 0.09
9 1 0.02
ACGTcount: A:0.19, C:0.06, G:0.01, T:0.73
Consensus pattern (6 bp):
TTATTT
Found at i:23932152 original size:3 final size:3
Alignment explanation
Indices: 23932138--23932167 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
23932128 TTATTTAAAA
*
23932138 AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
23932168 TAGCCTAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:23945852 original size:15 final size:17
Alignment explanation
Indices: 23945820--23945853 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
23945810 AACTCGTCAA
23945820 TTTTTTATTTTTATAAG
1 TTTTTTATTTTTATAAG
23945837 TTTTTT-TTTTTA-AAG
1 TTTTTTATTTTTATAAG
23945852 TT
1 TT
23945854 AGATTAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 6 0.35
17 6 0.35
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (17 bp):
TTTTTTATTTTTATAAG
Found at i:23948332 original size:28 final size:28
Alignment explanation
Indices: 23948300--23948354 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
23948290 TTAAAGAACT
*
23948300 GGTCTATCTTGTATATAGCTTTATACCC
1 GGTCTATCTTGTATATAGATTTATACCC
*
23948328 GGTCTATCTTGTATTTAGATTTATACC
1 GGTCTATCTTGTATATAGATTTATACC
23948355 ATGCATTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.45
Consensus pattern (28 bp):
GGTCTATCTTGTATATAGATTTATACCC
Found at i:23963572 original size:121 final size:121
Alignment explanation
Indices: 23963358--23963597 Score: 453
Period size: 121 Copynumber: 2.0 Consensus size: 121
23963348 GTTAAACAGC
*
23963358 TGGCAGGTGGTAGTAACATTGTGTTTGGTAAGAACGCTGCATCTAAGAGTCTATTTGGAGAGCAG
1 TGGCAGGTGGTAGTAACATTGTGTTTGGTAAGAACGCTGCATCTAAGAGTCCATTTGGAGAGCAG
23963423 TGAGATTGAAAATAGCGGTGGAGGTGAAATTAGTTACTATAGCGGTAAGATAAATA
66 TGAGATTGAAAATAGCGGTGGAGGTGAAATTAGTTACTATAGCGGTAAGATAAATA
*
23963479 TGGCAGGTGGTAGTAACATTGTGTTTGGTAAGAACGCTGCATTTAAGAGTCCATTTGGAGAGCAG
1 TGGCAGGTGGTAGTAACATTGTGTTTGGTAAGAACGCTGCATCTAAGAGTCCATTTGGAGAGCAG
*
23963544 TGAGATTGAAAATAGCGGTGGAGGTGAAATTAGTTACTATAGCGGTAGGATAAA
66 TGAGATTGAAAATAGCGGTGGAGGTGAAATTAGTTACTATAGCGGTAAGATAAA
23963598 AATTAGTGGT
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
121 116 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (121 bp):
TGGCAGGTGGTAGTAACATTGTGTTTGGTAAGAACGCTGCATCTAAGAGTCCATTTGGAGAGCAG
TGAGATTGAAAATAGCGGTGGAGGTGAAATTAGTTACTATAGCGGTAAGATAAATA
Found at i:23964295 original size:26 final size:25
Alignment explanation
Indices: 23964265--23964325 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
23964255 TAATATAATA
*
23964265 TAAAATTATAAAAATATATTTAGTAT
1 TAAAATTATAAAAAT-CATTTAGTAT
** *
23964291 TAAAATATATTTAAATCATTTATTAT
1 TAAAAT-TATAAAAATCATTTAGTAT
23964317 TAAAATTAT
1 TAAAATTAT
23964326 TAATATTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 20 0.67
27 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (25 bp):
TAAAATTATAAAAATCATTTAGTAT
Found at i:23964345 original size:20 final size:19
Alignment explanation
Indices: 23964323--23964395 Score: 55
Period size: 17 Copynumber: 3.9 Consensus size: 19
23964313 TTATTAAAAT
23964323 TATTAATATTAAAAAAT-A
1 TATTAATATTAAAAAATAA
* *
23964341 -ATT-ATATTTTAATAATAA
1 TATTAATA-TTAAAAAATAA
* *
23964359 TATTTAATATTAAAATATTA
1 TA-TTAATATTAAAAAATAA
*
23964379 TGTTAATA-TAAAAAATA
1 TATTAATATTAAAAAATA
23964396 CTTAAAGTAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
16 3 0.07
17 10 0.24
18 8 0.20
19 7 0.17
20 10 0.24
21 3 0.07
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (19 bp):
TATTAATATTAAAAAATAA
Found at i:23964384 original size:19 final size:18
Alignment explanation
Indices: 23964308--23964400 Score: 72
Period size: 18 Copynumber: 5.3 Consensus size: 18
23964298 TATTTAAATC
*
23964308 ATTTATTATTAAAAT--T
1 ATTTAATATTAAAATAAT
23964324 A-TTAATATTAAAA-AAT
1 ATTTAATATTAAAATAAT
* *
23964340 AATTATATTTTAATAATAAT
1 ATTTA-ATATTAA-AATAAT
*
23964360 ATTTAATATTAAAATATT
1 ATTTAATATTAAAATAAT
23964378 ATGTTAATA-TAAAA-AAT
1 AT-TTAATATTAAAATAAT
*
23964395 ACTTAA
1 ATTTAA
23964401 AGTAAAACTA
Statistics
Matches: 63, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
15 11 0.17
16 7 0.11
17 6 0.10
18 18 0.29
19 14 0.22
20 7 0.11
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (18 bp):
ATTTAATATTAAAATAAT
Found at i:23977432 original size:16 final size:16
Alignment explanation
Indices: 23977411--23977452 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
23977401 AATTCATAAA
*
23977411 TTTATTTTATAAGGAT
1 TTTATTTTATAAAGAT
*
23977427 TTTATTTTGAAAAAGAT
1 TTTATTTT-ATAAAGAT
23977444 TTT-TTTTAT
1 TTTATTTTAT
23977453 TATTGAAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 1 0.05
16 12 0.55
17 9 0.41
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (16 bp):
TTTATTTTATAAAGAT
Found at i:23977468 original size:22 final size:21
Alignment explanation
Indices: 23977426--23977470 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
23977416 TTTATAAGGA
23977426 TTTTATTTTGAAAAAGATTTT
1 TTTTATTTTGAAAAAGATTTT
*
23977447 TTTTATTATTG-AAATGATTTT
1 TTTTATT-TTGAAAAAGATTTT
23977468 TTT
1 TTT
23977471 GTTTTCTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTTATTTTGAAAAAGATTTT
Found at i:23977545 original size:15 final size:15
Alignment explanation
Indices: 23977521--23977559 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
23977511 AGATTTTTTG
*
23977521 TTTTTGTTTTTAT-T
1 TTTTTATTTTTATAT
23977535 ATTTTTATTTTTATAT
1 -TTTTTATTTTTATAT
23977551 TTTTTATTT
1 TTTTTATTT
23977560 GTTTTCCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 21 0.95
16 1 0.05
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (15 bp):
TTTTTATTTTTATAT
Found at i:23977545 original size:21 final size:21
Alignment explanation
Indices: 23977515--23977559 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
23977505 TGAAAAAGAT
* *
23977515 TTTTTGTTTTTGT-TTTTATTA
1 TTTTTATTTTTATATTTT-TTA
23977536 TTTTTATTTTTATATTTTTTA
1 TTTTTATTTTTATATTTTTTA
23977557 TTT
1 TTT
23977560 GTTTTCCAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.04, T:0.82
Consensus pattern (21 bp):
TTTTTATTTTTATATTTTTTA
Found at i:23977718 original size:25 final size:25
Alignment explanation
Indices: 23977629--23977723 Score: 74
Period size: 25 Copynumber: 3.8 Consensus size: 25
23977619 AAAAACCAGT
* * *
23977629 AAAATAGAATAATAATG-AAATAGA
1 AAAATAAAATAAAAATGAAAATTGA
*
23977653 AAAA-AATAACTAAAAAT-AAAATCTCA
1 AAAATAA-AA-TAAAAATGAAAAT-TGA
*
23977679 TAATATAAAAT--AAATGAAAATTGA
1 -AAAATAAAATAAAAATGAAAATTGA
23977703 AAAATAAAATAAAAATGAAAA
1 AAAATAAAATAAAAATGAAAA
23977724 AAGAAACTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 17
0.70 0.09 0.22
Matches are distributed among these distances:
23 10 0.18
24 12 0.22
25 24 0.44
26 2 0.04
27 5 0.09
28 2 0.04
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.21
Consensus pattern (25 bp):
AAAATAAAATAAAAATGAAAATTGA
Found at i:23977725 original size:19 final size:18
Alignment explanation
Indices: 23977685--23977724 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
23977675 CTCATAATAT
*
23977685 AAAATAAATGAAAATTGA
1 AAAATAAATGAAAAATGA
23977703 AAAATAAAAT-AAAAATGA
1 AAAAT-AAATGAAAAATGA
23977721 AAAA
1 AAAA
23977725 AGAAACTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.17
Consensus pattern (18 bp):
AAAATAAATGAAAAATGA
Found at i:23978567 original size:3 final size:3
Alignment explanation
Indices: 23978559--23978679 Score: 66
Period size: 3 Copynumber: 42.3 Consensus size: 3
23978549 GAAAATAAAA
* *
23978559 AAT AAT AAT AAT AACT -AT AAT AACT -AT AAT -AT AAT AAT TAT TAT
1 AAT AAT AAT AAT AA-T AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT
* * *
23978603 TAT AAT TAT AAT AAC AACT -AT AAT -AT AAT -AT AAT -AT AAT -AT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
23978644 AAT -AT AAT -AT AGT ACCAT AAT AAT AAT -AT AAT AAT A
1 AAT AAT AAT AAT AAT A--AT AAT AAT AAT AAT AAT AAT A
23978680 GTGATATACT
Statistics
Matches: 94, Mismatches: 8, Indels: 32
0.70 0.06 0.24
Matches are distributed among these distances:
2 19 0.20
3 71 0.76
4 2 0.02
5 2 0.02
ACGTcount: A:0.57, C:0.05, G:0.01, T:0.37
Consensus pattern (3 bp):
AAT
Found at i:23978645 original size:38 final size:38
Alignment explanation
Indices: 23978575--23978676 Score: 109
Period size: 38 Copynumber: 2.7 Consensus size: 38
23978565 AATAATAACT
* * *
23978575 ATAATAACTATAATATAATA-ATTATTATTATAATTATA
1 ATAACAACTATAATATAATATAATATTAATATAA-TATA
23978613 ATAACAACTATAATATAATATAATA-TAATATAATATA
1 ATAACAACTATAATATAATATAATATTAATATAATATA
** *
23978650 ATATAGTACCATAATAATAATATAATA
1 ATA-ACAACTATAAT-ATAATATAATA
23978677 ATAGTGATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
37 7 0.13
38 34 0.62
39 14 0.25
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (38 bp):
ATAACAACTATAATATAATATAATATTAATATAATATA
Found at i:23978676 original size:5 final size:5
Alignment explanation
Indices: 23978563--23978654 Score: 80
Period size: 5 Copynumber: 17.6 Consensus size: 5
23978553 ATAAAAAATA
* * *
23978563 ATAAT AATAACT ATAAT A-ACT ATAAT ATAAT A-ATT ATTATT ATAATT
1 ATAAT -ATAA-T ATAAT ATAAT ATAAT ATAAT ATAAT A-TAAT ATAA-T
*
23978610 ATAAT AACAACT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT -ATAA-T ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
23978655 GTACCATAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 15
0.78 0.06 0.16
Matches are distributed among these distances:
4 6 0.08
5 42 0.58
6 23 0.32
7 2 0.03
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:23981440 original size:24 final size:23
Alignment explanation
Indices: 23981397--23981462 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 23
23981387 AAGTATTTTT
*
23981397 AAAATTTTATAAAAGTAAAAAAATA
1 AAAATTTTA-AAAA-AAAAAAAATA
**
23981422 CAAAATTTTAAAAAAAAAAATCTA
1 -AAAATTTTAAAAAAAAAAAAATA
*
23981446 AAAATTTTAATAAAAAA
1 AAAATTTTAAAAAAAAA
23981463 TTCTAAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
23 16 0.44
24 7 0.19
25 4 0.11
26 9 0.25
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATTTTAAAAAAAAAAAAATA
Found at i:23981441 original size:22 final size:22
Alignment explanation
Indices: 23981413--23981480 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 22
23981403 TTATAAAAGT
23981413 AAAAAAAT-ACAAAATTTTAAAA
1 AAAAAAATCA-AAAATTTTAAAA
*
23981435 AAAAAAATCTAAAAATTTT-AAT
1 AAAAAAATC-AAAAATTTTAAAA
* *
23981457 AAAAAATTCTAAAAATTCTAAAA
1 AAAAAAATC-AAAAATTTTAAAA
23981480 A
1 A
23981481 TTAAAAAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
22 27 0.69
23 11 0.28
24 1 0.03
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (22 bp):
AAAAAAATCAAAAATTTTAAAA
Found at i:23981479 original size:8 final size:9
Alignment explanation
Indices: 23981458--23981482 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
23981448 AATTTTAATA
23981458 AAAAATTCT
1 AAAAATTCT
23981467 AAAAATTCT
1 AAAAATTCT
23981476 AAAAATT
1 AAAAATT
23981483 AAAAAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAAATTCT
Found at i:23981644 original size:10 final size:11
Alignment explanation
Indices: 23981622--23981650 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
23981612 TAATTATATG
23981622 TATTTTTTATA
1 TATTTTTTATA
23981633 TATTTTTT-TA
1 TATTTTTTATA
23981643 TATTTTTT
1 TATTTTTT
23981651 GAAAATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (11 bp):
TATTTTTTATA
Found at i:23981672 original size:26 final size:24
Alignment explanation
Indices: 23981643--23981721 Score: 79
Period size: 26 Copynumber: 3.1 Consensus size: 24
23981633 TATTTTTTTA
23981643 TATTTTTTGAAAATTTTGAAAATTCT
1 TATTTTTTGAAAATTTT-AAAATT-T
* *
23981669 TATTTTTAT-TAAATATTAAATATTT
1 TATTTTT-TGAAAATTTTAAA-ATTT
23981694 TATTTTTTCGAAAATTTTTAAAATTT
1 TATTTTTT-GAAAA-TTTTAAAATTT
23981720 TA
1 TA
23981722 GAATATTTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
24 1 0.02
25 11 0.25
26 25 0.57
27 7 0.16
ACGTcount: A:0.37, C:0.03, G:0.04, T:0.57
Consensus pattern (24 bp):
TATTTTTTGAAAATTTTAAAATTT
Found at i:23981738 original size:27 final size:27
Alignment explanation
Indices: 23981708--23981764 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
23981698 TTTTCGAAAA
*
23981708 TTTTTAAAATTTT-AGAATATTTCAGAT
1 TTTTTAAAATTTTAAAAAT-TTTCAGAT
**
23981735 TTTTTTTAATTTTAAAAATTTTCAGAT
1 TTTTTAAAATTTTAAAAATTTTCAGAT
23981762 TTT
1 TTT
23981765 CATATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (27 bp):
TTTTTAAAATTTTAAAAATTTTCAGAT
Found at i:23981859 original size:8 final size:8
Alignment explanation
Indices: 23981848--23981891 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
23981838 TTTAAGAAAA
23981848 TTTTATTT
1 TTTTATTT
23981856 TTTTATTT
1 TTTTATTT
23981864 TTTTATTT
1 TTTTATTT
* *
23981872 TCCTAATTT
1 T-TTTATTT
*
23981881 TTTCATTT
1 TTTTATTT
23981889 TTT
1 TTT
23981892 AGATTTTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
8 25 0.81
9 6 0.19
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTATTT
Found at i:23981867 original size:16 final size:16
Alignment explanation
Indices: 23981848--23981899 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
23981838 TTTAAGAAAA
*
23981848 TTTTATTTTTTTATTT
1 TTTTATTTTTTAATTT
*
23981864 TTTTATTTTCCTAATTT
1 TTTTATTTT-TTAATTT
*
23981881 TTTCATTTTTTAGATTT
1 TTTTATTTTTTA-ATTT
23981898 TT
1 TT
23981900 ATTAAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 11 0.37
17 19 0.63
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (16 bp):
TTTTATTTTTTAATTT
Found at i:23981924 original size:18 final size:20
Alignment explanation
Indices: 23981887--23981928 Score: 70
Period size: 18 Copynumber: 2.2 Consensus size: 20
23981877 ATTTTTTCAT
23981887 TTTTTAGATTTTTATTAAAA
1 TTTTTAGATTTTTATTAAAA
23981907 TTTTTAGA-TTTT-TTAAAA
1 TTTTTAGATTTTTATTAAAA
23981925 TTTT
1 TTTT
23981929 GAGAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.45
19 4 0.18
20 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTTTAGATTTTTATTAAAA
Found at i:23982065 original size:38 final size:38
Alignment explanation
Indices: 23982023--23982099 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
23982013 TTATTGGATA
* * *
23982023 TTCATATCACATTAATAAGTTAACTTCTTATATTAAAC
1 TTCATATCACATCAATAAGTTAACTACTGATATTAAAC
*
23982061 TTCATATCACATCAATAAGTTTACTACTGATATTAAAC
1 TTCATATCACATCAATAAGTTAACTACTGATATTAAAC
23982099 T
1 T
23982100 AAGATATCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.39, C:0.17, G:0.04, T:0.40
Consensus pattern (38 bp):
TTCATATCACATCAATAAGTTAACTACTGATATTAAAC
Found at i:23983734 original size:22 final size:21
Alignment explanation
Indices: 23983695--23983735 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
23983685 GATGAGGACG
23983695 AATTTAAAAATTAATTTAATT
1 AATTTAAAAATTAATTTAATT
* *
23983716 AATTTATATAATTATTTTAA
1 AATTTA-AAAATTAATTTAA
23983736 AAAATAGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTTAAAAATTAATTTAATT
Found at i:23984200 original size:24 final size:26
Alignment explanation
Indices: 23984163--23984210 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
23984153 TTAACATGTA
*
23984163 AAAATAAATTCGATT-TTTATATTTG
1 AAAATAAACTCGATTATTTATATTTG
23984188 AAAA-AAACTCGATTATTTATATT
1 AAAATAAACTCGATTATTTATATT
23984211 CAAGTTCGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (26 bp):
AAAATAAACTCGATTATTTATATTTG
Found at i:23984835 original size:13 final size:13
Alignment explanation
Indices: 23984817--23984860 Score: 70
Period size: 13 Copynumber: 3.2 Consensus size: 13
23984807 AATAATATTT
23984817 TATTAAATTAAAA
1 TATTAAATTAAAA
23984830 TATTAAATTAAAA
1 TATTAAATTAAAA
23984843 TATTAAATATATAAA
1 TATTAAAT-TA-AAA
23984858 TAT
1 TAT
23984861 AATATTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
13 21 0.72
14 2 0.07
15 6 0.21
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TATTAAATTAAAA
Found at i:23984899 original size:51 final size:51
Alignment explanation
Indices: 23984808--23984907 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 51
23984798 TTTAATATAA
*
23984808 ATAATATTTTATTAAATTAAAATATTAAATTAAAATATTAAATATATAAAT
1 ATAATATTTTATTAAATTAAAATATTAAATTAAAATATTAAATAAATAAAT
23984859 ATAATATTTTATT-AATATAATATATATT-AA-TATAAA-ATTAAATAAATAA
1 ATAATATTTTATTAAAT-TAA-A-ATATTAAATTA-AAATATTAAATAAATAA
23984908 TAAAAAGAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
50 3 0.07
51 30 0.68
52 6 0.14
53 5 0.11
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (51 bp):
ATAATATTTTATTAAATTAAAATATTAAATTAAAATATTAAATAAATAAAT
Found at i:23999853 original size:22 final size:22
Alignment explanation
Indices: 23999828--23999870 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
23999818 TTTTCTGTCT
23999828 TTAATTCTAGAGATACAAATAC
1 TTAATTCTAGAGATACAAATAC
*
23999850 TTAATTCTAGATATACAAATA
1 TTAATTCTAGAGATACAAATA
23999871 TAAATATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.35
Consensus pattern (22 bp):
TTAATTCTAGAGATACAAATAC
Found at i:24007624 original size:15 final size:15
Alignment explanation
Indices: 24007604--24007634 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24007594 CATCTTCATC
24007604 ATCAGAACTATCCTT
1 ATCAGAACTATCCTT
*
24007619 ATCAGAACTATGCTT
1 ATCAGAACTATCCTT
24007634 A
1 A
24007635 AATATTGTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.32
Consensus pattern (15 bp):
ATCAGAACTATCCTT
Found at i:24011110 original size:71 final size:71
Alignment explanation
Indices: 24010994--24011132 Score: 242
Period size: 71 Copynumber: 2.0 Consensus size: 71
24010984 ACAATTACAA
* *
24010994 CCAGTAACTATTTTTCACCATGATAAAGCATAAAGAGAAATAATCCATGACTTCCATTACATAAC
1 CCAGTAACTATTTTTCACCATGATAAAGCATAAAGAGAAATAATCCATCACTTCCACTACATAAC
24011059 TAACAG
66 TAACAG
* *
24011065 CCAGTAACTATTTTTCAGCATGATAAAGCGTAAAGAGAAATAATCCATCACTTCCACTACATAAC
1 CCAGTAACTATTTTTCACCATGATAAAGCATAAAGAGAAATAATCCATCACTTCCACTACATAAC
24011130 TAA
66 TAA
24011133 ACCTTCTTAT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 64 1.00
ACGTcount: A:0.42, C:0.22, G:0.10, T:0.27
Consensus pattern (71 bp):
CCAGTAACTATTTTTCACCATGATAAAGCATAAAGAGAAATAATCCATCACTTCCACTACATAAC
TAACAG
Found at i:24016668 original size:17 final size:18
Alignment explanation
Indices: 24016643--24016680 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
24016633 AGTAATCGAT
* *
24016643 TTTTTTTATT-ATTATTA
1 TTTTATTATTAATAATTA
24016660 TTTTATTATTAATAATTA
1 TTTTATTATTAATAATTA
24016678 TTT
1 TTT
24016681 AACCACAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTATTATTAATAATTA
Found at i:24018240 original size:9 final size:9
Alignment explanation
Indices: 24018228--24018257 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
24018218 AAAATCTAAA
24018228 AAATATTAT
1 AAATATTAT
24018237 AAATATTAT
1 AAATATTAT
24018246 AAATATTA-
1 AAATATTAT
24018254 AAAT
1 AAAT
24018258 TCGAATCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.19
9 17 0.81
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AAATATTAT
Found at i:24024023 original size:21 final size:22
Alignment explanation
Indices: 24023999--24024042 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
24023989 AAATTAAAGC
24023999 TTTTTCATTGGATCTTTATGCTTT
1 TTTTTCATTGGATCTTTATGC--T
24024023 TTTTTCATTGGATCTTTATG
1 TTTTTCATTGGATCTTTATG
24024043 AGAGGGTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.14, C:0.11, G:0.14, T:0.61
Consensus pattern (22 bp):
TTTTTCATTGGATCTTTATGCT
Found at i:24025062 original size:21 final size:21
Alignment explanation
Indices: 24025033--24025072 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
24025023 CCCTGAAGCA
24025033 ATTAAAAAC-AGATAAAATATC
1 ATTAAAAACGA-ATAAAATATC
*
24025054 ATTACAAACGAATAAAATA
1 ATTAAAAACGAATAAAATA
24025073 CATAGAAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.23
Consensus pattern (21 bp):
ATTAAAAACGAATAAAATATC
Found at i:24026023 original size:2 final size:2
Alignment explanation
Indices: 24026011--24026056 Score: 62
Period size: 2 Copynumber: 24.5 Consensus size: 2
24026001 TTCATCACTA
*
24026011 AT AT AT CT AT AT A- AT AT AT AT AT AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24026051 AT -T AT A
1 AT AT AT A
24026057 GCCTTTAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
1 3 0.08
2 36 0.92
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24026027 original size:13 final size:11
Alignment explanation
Indices: 24026011--24026056 Score: 65
Period size: 11 Copynumber: 3.9 Consensus size: 11
24026001 TTCATCACTA
24026011 ATATATCTATAT
1 ATATAT-TATAT
24026023 AATATATATATAT
1 -ATATAT-TATAT
24026036 ATATATTATAT
1 ATATATTATAT
24026047 ATATATTATA
1 ATATATTATA
24026057 GCCTTTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 15 0.47
12 6 0.19
13 11 0.34
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (11 bp):
ATATATTATAT
Found at i:24026033 original size:17 final size:17
Alignment explanation
Indices: 24026011--24026056 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
24026001 TTCATCACTA
*
24026011 ATATATCTATATAATAT
1 ATATATATATATAATAT
*
24026028 ATATATATATATATTAT
1 ATATATATATATAATAT
24026045 ATATATAT-TATA
1 ATATATATATATA
24026057 GCCTTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
16 4 0.15
17 23 0.85
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATATATATATAATAT
Found at i:24032064 original size:12 final size:13
Alignment explanation
Indices: 24032042--24032070 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
24032032 CGTAGTACTA
24032042 TTTCTTTTTTTTT
1 TTTCTTTTTTTTT
24032055 TTTCTTTTTTTTT
1 TTTCTTTTTTTTT
24032068 TTT
1 TTT
24032071 ATTTAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (13 bp):
TTTCTTTTTTTTT
Found at i:24034843 original size:2 final size:2
Alignment explanation
Indices: 24034836--24034876 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
24034826 GTTGTTTTGG
24034836 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24034877 TTTTTTTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24034934 original size:27 final size:26
Alignment explanation
Indices: 24034895--24034945 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
24034885 TTTTTTCACA
*
24034895 TTTTTTAAAAAATATTAATATTAAAAG
1 TTTTATAAAAAATATTAAT-TTAAAAG
* *
24034922 TTTTATAACAAATATTGATTTAAA
1 TTTTATAAAAAATATTAATTTAAA
24034946 TTTAAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.24
27 16 0.76
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (26 bp):
TTTTATAAAAAATATTAATTTAAAAG
Found at i:24035512 original size:19 final size:19
Alignment explanation
Indices: 24035485--24035522 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24035475 TAAATGATTT
*
24035485 ATTTGAATTTAATTTAATA
1 ATTTGAATTTAATATAATA
*
24035504 ATTTTAATTTAATATAATA
1 ATTTGAATTTAATATAATA
24035523 TTAATAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTTGAATTTAATATAATA
Found at i:24035669 original size:2 final size:2
Alignment explanation
Indices: 24035662--24035694 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
24035652 AAAATAAATA
24035662 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24035695 CACACACCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24036853 original size:2 final size:2
Alignment explanation
Indices: 24036846--24036870 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24036836 ACATGGACAA
24036846 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
24036871 AATACCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24036939 original size:10 final size:10
Alignment explanation
Indices: 24036910--24036948 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
24036900 CTTGCATCTC
*
24036910 AATTTAAAACT
1 AATTT-AAAGT
24036921 AATTTTAAAGT
1 AA-TTTAAAGT
24036932 AATTTAAAGT
1 AATTTAAAGT
24036942 AATTTAA
1 AATTTAA
24036949 CATTTTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 15 0.58
11 8 0.31
12 3 0.12
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (10 bp):
AATTTAAAGT
Found at i:24037012 original size:39 final size:38
Alignment explanation
Indices: 24036928--24037013 Score: 120
Period size: 39 Copynumber: 2.2 Consensus size: 38
24036918 ACTAATTTTA
*
24036928 AAGTAA-TTTAAAGTAATTTAACATTTTCAATTTATCT
1 AAGTAATTTTAAAGTAAATTAACATTTTCAATTTATCT
* *
24036965 ACACTAATTTTAAAGTAAATTATCATTTTCAATTTATCT
1 A-AGTAATTTTAAAGTAAATTAACATTTTCAATTTATCT
24037004 GAAGTAATTT
1 -AAGTAATTT
24037014 ATTTTTTTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
37 1 0.02
38 4 0.10
39 36 0.86
40 1 0.02
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (38 bp):
AAGTAATTTTAAAGTAAATTAACATTTTCAATTTATCT
Found at i:24042879 original size:16 final size:16
Alignment explanation
Indices: 24042850--24042883 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
24042840 TATTTAAAAT
24042850 ATTTGAAATTATTTAA
1 ATTTGAAATTATTTAA
24042866 ATTT-AAATTCATTTAA
1 ATTTGAAATT-ATTTAA
24042882 AT
1 AT
24042884 GAGTATTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (16 bp):
ATTTGAAATTATTTAA
Found at i:24043221 original size:10 final size:10
Alignment explanation
Indices: 24043208--24043283 Score: 59
Period size: 10 Copynumber: 7.9 Consensus size: 10
24043198 AATATATTAA
24043208 TTTAAAAATT
1 TTTAAAAATT
*
24043218 TTTAGAAA--
1 TTTAAAAATT
*
24043226 TTTAAAATTT
1 TTTAAAAATT
24043236 TTTAAAAATT
1 TTTAAAAATT
* *
24043246 CTTAAAAAAT
1 TTTAAAAATT
* *
24043256 TTAAAAAAAT
1 TTTAAAAATT
* *
24043266 TCTAAAAA-C
1 TTTAAAAATT
24043275 TTTAAAAAT
1 TTTAAAAAT
24043284 ATATAAAATA
Statistics
Matches: 51, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
8 6 0.12
9 7 0.14
10 38 0.75
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (10 bp):
TTTAAAAATT
Found at i:24043229 original size:18 final size:18
Alignment explanation
Indices: 24043206--24043283 Score: 68
Period size: 18 Copynumber: 4.2 Consensus size: 18
24043196 CAAATATATT
*
24043206 AATTTAAAAATTTTTAGA
1 AATTTAAAAATTTTTAAA
*
24043224 AATTTAAAATTTTTTAAA
1 AATTTAAAAATTTTTAAA
**
24043242 AATTCTTAAAAAATTTAAAAA
1 AA-T-TT-AAAAATTTTTAAA
*
24043263 AATTCTAAAAA-CTTTAAA
1 AATT-TAAAAATTTTTAAA
24043281 AAT
1 AAT
24043284 ATATAAAATA
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
18 25 0.52
19 7 0.15
20 4 0.08
21 12 0.25
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (18 bp):
AATTTAAAAATTTTTAAA
Found at i:24043262 original size:20 final size:20
Alignment explanation
Indices: 24043239--24043282 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 20
24043229 AAAATTTTTT
24043239 AAAAATTCTTAAAAAATTTAA
1 AAAAATTC-TAAAAAATTTAA
*
24043260 AAAAATTCTAAAAACTTTAA
1 AAAAATTCTAAAAAATTTAA
24043280 AAA
1 AAA
24043283 TATATAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAAATTCTAAAAAATTTAA
Found at i:24043271 original size:11 final size:11
Alignment explanation
Indices: 24043239--24043273 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
24043229 AAAATTTTTT
*
24043239 AAAAATTCTTA
1 AAAAATTCTAA
24043250 AAAAATT-TAA
1 AAAAATTCTAA
24043260 AAAAATTCTAA
1 AAAAATTCTAA
24043271 AAA
1 AAA
24043274 CTTTAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAAATTCTAA
Found at i:24044769 original size:21 final size:21
Alignment explanation
Indices: 24044740--24044779 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
24044730 CCCTGAAGCA
24044740 ATTAAAAAC-AGATAAAATATC
1 ATTAAAAACGA-ATAAAATATC
*
24044761 ATTACAAACGAATAAAATA
1 ATTAAAAACGAATAAAATA
24044780 CATAGAAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.23
Consensus pattern (21 bp):
ATTAAAAACGAATAAAATATC
Found at i:24045718 original size:2 final size:2
Alignment explanation
Indices: 24045705--24045744 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
24045695 GATTCATCAC
*
24045705 TA TA TA TC TA TA TA -A TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24045745 GCCTTAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24045731 original size:21 final size:21
Alignment explanation
Indices: 24045705--24045744 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
24045695 GATTCATCAC
*
24045705 TATATATCTATATAATATATA
1 TATATATATATATAATATATA
*
24045726 TATATATATATATATTATA
1 TATATATATATATAATATA
24045745 GCCTTAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (21 bp):
TATATATATATATAATATATA
Found at i:24054889 original size:13 final size:13
Alignment explanation
Indices: 24054867--24054900 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
24054857 TAGATAATTT
24054867 AATAATTTTTA-A
1 AATAATTTTTATA
24054879 AATATATTTTTATA
1 AATA-ATTTTTATA
24054893 AATAATTT
1 AATAATTT
24054901 AAAATTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 11 0.55
14 5 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
AATAATTTTTATA
Found at i:24055040 original size:2 final size:2
Alignment explanation
Indices: 24055029--24055061 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
24055019 ATGTATGTTG
*
24055029 TA TA -A TA TA TA TA TA TA TA TA TA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24055062 CGATTCGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:24055130 original size:25 final size:26
Alignment explanation
Indices: 24055097--24055149 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
24055087 TATAATTATA
*
24055097 AATTATTTATTTGAATTTAAT-TTAAT
1 AATTATTTATTT-AATATAATATTAAT
24055123 AATT-TTTATTTAATATAATATTAAT
1 AATTATTTATTTAATATAATATTAAT
24055148 AA
1 AA
24055150 CAAATTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 7 0.28
25 14 0.56
26 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (26 bp):
AATTATTTATTTAATATAATATTAAT
Found at i:24056585 original size:39 final size:39
Alignment explanation
Indices: 24056510--24056623 Score: 176
Period size: 39 Copynumber: 2.9 Consensus size: 39
24056500 ATTTAAAACT
* *
24056510 AATTTTAAAGTAATTTAACA-TTTCAATTTATCTGCACC
1 AATTTTAAAGTAATTTATCATTTTCAATTTATTTGCACC
*
24056548 AATTTTAAAGTAATTTATCATTTTCAATTTATTTGCACT
1 AATTTTAAAGTAATTTATCATTTTCAATTTATTTGCACC
**
24056587 AATTTTAAAGTAATTTATTTTTTTCAATTTATTTGCA
1 AATTTTAAAGTAATTTATCATTTTCAATTTATTTGCA
24056624 GTTAACATGA
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 19 0.27
39 51 0.73
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (39 bp):
AATTTTAAAGTAATTTATCATTTTCAATTTATTTGCACC
Found at i:24062837 original size:20 final size:21
Alignment explanation
Indices: 24062790--24062837 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
24062780 AATATATTAA
24062790 TTTAAAATTTTTTTATAAAA-
1 TTTAAAATTTTTTTATAAAAT
*
24062810 TTTAAAAATTTTTTA-AAAAT
1 TTTAAAATTTTTTTATAAAAT
24062830 TCTTAAAA
1 T-TTAAAA
24062838 AATTTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 4 0.16
20 15 0.60
21 6 0.24
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTAAAATTTTTTTATAAAAT
Found at i:24062838 original size:21 final size:20
Alignment explanation
Indices: 24062788--24062830 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
24062778 CAAATATATT
*
24062788 AATTTAAAATTTTTTTATAA
1 AATTTAAAAATTTTTTATAA
24062808 AATTTAAAAATTTTTTA-AA
1 AATTTAAAAATTTTTTATAA
24062827 AATT
1 AATT
24062831 CTTAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AATTTAAAAATTTTTTATAA
Found at i:24062865 original size:11 final size:9
Alignment explanation
Indices: 24062801--24062945 Score: 57
Period size: 10 Copynumber: 15.1 Consensus size: 9
24062791 TTAAAATTTT
*
24062801 TTTATAAAA
1 TTTAAAAAA
*
24062810 TTTAAAAATTT
1 TTTAAAAA--A
*
24062821 TTTAAAAAT
1 TTTAAAAAA
24062830 TCTTAAAAAA
1 T-TTAAAAAA
24062840 TTTAAAAAA
1 TTTAAAAAA
24062849 --TAAAAAA
1 TTTAAAAAA
*
24062856 TCTTATAAAA
1 T-TTAAAAAA
24062866 TTTGCAAAAAAAAA
1 TTT-----AAAAAA
*
24062880 TTT--TAAA
1 TTTAAAAAA
*
24062887 TATAAAAAA
1 TTTAAAAAA
*
24062896 TTT-TAAAA
1 TTTAAAAAA
24062904 TTCTAAAAAAA
1 TT-T-AAAAAA
24062915 TTTCAAAAAA
1 TTT-AAAAAA
*
24062925 TTCTAAAAACT
1 TT-TAAAAA-A
24062936 TTTAAAAAA
1 TTTAAAAAA
24062945 T
1 T
24062946 AAAAAATATA
Statistics
Matches: 104, Mismatches: 14, Indels: 36
0.68 0.09 0.23
Matches are distributed among these distances:
7 12 0.12
8 6 0.06
9 26 0.25
10 35 0.34
11 17 0.16
14 8 0.08
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.36
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:24062865 original size:17 final size:16
Alignment explanation
Indices: 24062833--24062866 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24062823 TAAAAATTCT
24062833 TAAAAAATTTAAAAAA
1 TAAAAAATTTAAAAAA
*
24062849 TAAAAAATCTTATAAAA
1 TAAAAAAT-TTAAAAAA
24062866 T
1 T
24062867 TTGCAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (16 bp):
TAAAAAATTTAAAAAA
Found at i:24062865 original size:38 final size:36
Alignment explanation
Indices: 24062820--24062943 Score: 115
Period size: 40 Copynumber: 3.2 Consensus size: 36
24062810 TTTAAAAATT
*
24062820 TTTTAAAAATTCTTAAAAAATTTAAAAAATAAAAAA
1 TTTTAAAAATTCTAAAAAAATTTAAAAAATAAAAAA
* * * *
24062856 TCTTATAAAATTTGCAAAAAAAAATTTTAAATATAAAAAA
1 T-TT-TAAAAATT-C-TAAAAAAATTTAAAAAATAAAAAA
*
24062896 TTTT-AAAATTCTAAAAAAATTTCAAAAAATTCTAAAAAC
1 TTTTAAAAATTCTAAAAAAATTT-AAAAAA---TAAAAAA
24062935 TTTTAAAAA
1 TTTTAAAAA
24062944 ATAAAAAATA
Statistics
Matches: 69, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
35 10 0.14
36 6 0.09
37 7 0.10
38 8 0.12
39 13 0.19
40 25 0.36
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.34
Consensus pattern (36 bp):
TTTTAAAAATTCTAAAAAAATTTAAAAAATAAAAAA
Found at i:24062910 original size:18 final size:18
Alignment explanation
Indices: 24062874--24062969 Score: 72
Period size: 19 Copynumber: 5.3 Consensus size: 18
24062864 AATTTGCAAA
*
24062874 AAAAAATTTT-AAA-TAT
1 AAAAAATTTTAAAATTCT
24062890 AAAAAATTTTAAAATTCT
1 AAAAAATTTTAAAATTCT
*
24062908 AAAAAAATTTCAAAAAATTCT
1 -AAAAAATTT--TAAAATTCT
* **
24062929 AAAAACTTTTAAAA-AAT
1 AAAAAATTTTAAAATTCT
* *
24062946 AAAAAATATATAAAATACT
1 AAAAAAT-TTTAAAATTCT
24062965 AAAAA
1 AAAAA
24062970 TTATAGAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
16 10 0.16
17 10 0.16
18 12 0.19
19 16 0.25
20 8 0.12
21 8 0.12
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (18 bp):
AAAAAATTTTAAAATTCT
Found at i:24062943 original size:21 final size:21
Alignment explanation
Indices: 24062900--24062944 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
24062890 AAAAAATTTT
*
24062900 AAAATTCTAAAAAAATTTCAA
1 AAAATTCTAAAAAAATTTAAA
**
24062921 AAAATTCTAAAAACTTTTAAA
1 AAAATTCTAAAAAAATTTAAA
24062942 AAA
1 AAA
24062945 TAAAAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (21 bp):
AAAATTCTAAAAAAATTTAAA
Found at i:24062967 original size:19 final size:18
Alignment explanation
Indices: 24062874--24062974 Score: 66
Period size: 18 Copynumber: 5.6 Consensus size: 18
24062864 AATTTGCAAA
*
24062874 AAAAAATT-TTAAATA-T
1 AAAAAATTATAAAATACT
* *
24062890 AAAAAATTTTAAAATTCT
1 AAAAAATTATAAAATACT
* *
24062908 AAAAAAATTTCAAAAAATTCT
1 -AAAAAA-TT-ATAAAATACT
* * *
24062929 AAAAACTTTTAAAA-AAT
1 AAAAAATTATAAAATACT
24062946 AAAAAATATATAAAATACT
1 AAAAAAT-TATAAAATACT
24062965 -AAAAATTATA
1 AAAAAATTATA
24062975 GAAAATTTTT
Statistics
Matches: 66, Mismatches: 12, Indels: 13
0.73 0.13 0.14
Matches are distributed among these distances:
16 8 0.12
17 16 0.24
18 17 0.26
19 10 0.15
20 7 0.11
21 8 0.12
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAAATTATAAAATACT
Done.