Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 142 of 147
Found at i:26298211 original size:14 final size:14
Alignment explanation
Indices: 26298179--26298209 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26298169 TATAATATGA
26298179 TTTTATTTATTTAT
1 TTTTATTTATTTAT
26298193 TTTTATTTA-TTAT
1 TTTTATTTATTTAT
26298206 TTTT
1 TTTT
26298210 TAATCTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTATTTATTTAT
Found at i:26304507 original size:31 final size:32
Alignment explanation
Indices: 26304472--26304534 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
26304462 ATTTTTGATG
* *
26304472 TTTTTGTAT-CAATATATATTAT-GATATATAA
1 TTTTTGTATAAAATATA-ATTATAAATATATAA
26304503 TTTTTGTATAAAATATAATTATAAATATATAA
1 TTTTTGTATAAAATATAATTATAAATATATAA
26304535 ATTTATTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 14 0.50
32 14 0.50
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (32 bp):
TTTTTGTATAAAATATAATTATAAATATATAA
Found at i:26308409 original size:22 final size:21
Alignment explanation
Indices: 26308384--26308487 Score: 86
Period size: 22 Copynumber: 4.8 Consensus size: 21
26308374 AATTTAGACA
*
26308384 AAATCAATAATAACTTTATACT
1 AAAT-AATAATAACTTTATAGT
* * *
26308406 AAATTAATGATAAATGTATAGT
1 AAA-TAATAATAACTTTATAGT
* *
26308428 AAATTATAGATAACTTAATAGT
1 AAATAATA-ATAACTTTATAGT
*
26308450 AAA-ATATAATAACTTAATAGT
1 AAATA-ATAATAACTTTATAGT
26308471 AAATAAATAATAA-TTTA
1 AAAT-AATAATAACTTTA
26308488 AGAACAAATA
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
21 22 0.33
22 42 0.64
23 2 0.03
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.36
Consensus pattern (21 bp):
AAATAATAATAACTTTATAGT
Found at i:26308463 original size:21 final size:21
Alignment explanation
Indices: 26308423--26308488 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 21
26308413 TGATAAATGT
*
26308423 ATAGTAAATTATAGATAACTTA
1 ATAGTAAAATATA-ATAACTTA
26308445 ATAGTAAAATATAATAACTTA
1 ATAGTAAAATATAATAACTTA
* *
26308466 ATAGTAAATAAATAATAATTTA
1 ATAGTAAA-ATATAATAACTTA
26308488 A
1 A
26308489 GAACAAATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
21 16 0.40
22 24 0.60
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (21 bp):
ATAGTAAAATATAATAACTTA
Found at i:26308476 original size:18 final size:20
Alignment explanation
Indices: 26308423--26308480 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 20
26308413 TGATAAATGT
26308423 ATAGTAAATTATAGATAACTTA
1 ATAGTAAA-TATA-ATAACTTA
26308445 ATAGTAAAATATAATAACTTA
1 ATAGT-AAATATAATAACTTA
26308466 ATAGTAAATA-AATAA
1 ATAGTAAATATAATAA
26308481 TAATTTAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.14
20 5 0.14
21 13 0.37
22 9 0.26
23 3 0.09
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (20 bp):
ATAGTAAATATAATAACTTA
Found at i:26308555 original size:22 final size:22
Alignment explanation
Indices: 26308517--26308565 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
26308507 ATAGTGTATG
*
26308517 ATAACATAATAATAAAT-ACATA
1 ATAACATAATAAGAAATAACA-A
*
26308539 ATAACATAATAGGAAATAACAA
1 ATAACATAATAAGAAATAACAA
26308561 ATAAC
1 ATAAC
26308566 TTAACAGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.63, C:0.10, G:0.04, T:0.22
Consensus pattern (22 bp):
ATAACATAATAAGAAATAACAA
Found at i:26308577 original size:22 final size:22
Alignment explanation
Indices: 26308517--26308598 Score: 62
Period size: 22 Copynumber: 3.8 Consensus size: 22
26308507 ATAGTGTATG
* *
26308517 ATAACATAATAATAAATACATA
1 ATAACATAACAGTAAATACATA
* *
26308539 ATAACATAATAGGAAATAACA-A
1 ATAACATAACAGTAAAT-ACATA
*
26308561 ATAACTTAACAGTAAAT-CAT-
1 ATAACATAACAGTAAATACATA
* *
26308581 TTATACATAATAGTAAAT
1 ATA-ACATAACAGTAAAT
26308599 GTATAACACA
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
20 4 0.08
21 12 0.24
22 30 0.61
23 3 0.06
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.28
Consensus pattern (22 bp):
ATAACATAACAGTAAATACATA
Found at i:26308720 original size:22 final size:22
Alignment explanation
Indices: 26308612--26308728 Score: 112
Period size: 22 Copynumber: 5.4 Consensus size: 22
26308602 TAACACATAT
*
26308612 TAGTAAATTAAGGATAACTTAA
1 TAGTAAATTAATGATAACTTAA
* *
26308634 TA--AAAATAAGTGATAACTTAG
1 TAGTAAATTAA-TGATAACTTAA
* * * **
26308655 CAGTTAATTATTGATAACTTGC
1 TAGTAAATTAATGATAACTTAA
* *
26308677 TAATAAATAAATGATAACTTAA
1 TAGTAAATTAATGATAACTTAA
26308699 TAGTAAATTAATGATAACTTAA
1 TAGTAAATTAATGATAACTTAA
*
26308721 TAATAAAT
1 TAGTAAAT
26308729 AAGATTTAGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
20 6 0.08
21 10 0.14
22 53 0.73
23 4 0.05
ACGTcount: A:0.50, C:0.06, G:0.10, T:0.34
Consensus pattern (22 bp):
TAGTAAATTAATGATAACTTAA
Found at i:26308744 original size:44 final size:45
Alignment explanation
Indices: 26308612--26308733 Score: 160
Period size: 44 Copynumber: 2.8 Consensus size: 45
26308602 TAACACATAT
* *
26308612 TAGTAAATTAAGGATAACTTAATAA-AAATAAG-TGATAACTTAG
1 TAGTAAATTAATGATAACTTAATAATAAATAAGATGATAACTTAA
* * * **
26308655 CAGTTAATTATTGATAACTTGCTAATAAATAA-ATGATAACTTAA
1 TAGTAAATTAATGATAACTTAATAATAAATAAGATGATAACTTAA
26308699 TAGTAAATTAATGATAACTTAATAATAAATAAGAT
1 TAGTAAATTAATGATAACTTAATAATAAATAAGAT
26308734 TTAGTTTAAT
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 19 0.30
44 43 0.67
45 2 0.03
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.34
Consensus pattern (45 bp):
TAGTAAATTAATGATAACTTAATAATAAATAAGATGATAACTTAA
Found at i:26309087 original size:22 final size:21
Alignment explanation
Indices: 26309045--26309302 Score: 98
Period size: 22 Copynumber: 11.6 Consensus size: 21
26309035 CATAAATAGC
* *
26309045 TTAATAATAAATCAATGATAA
1 TTAATAGTAAATCAATTATAA
26309066 TTTAATAGTAAAT-AATTTATAA
1 -TTAATAGTAAATCAA-TTATAA
* *
26309088 CTAAGTAGTAATTAAT-AATTAAAAA
1 TTAA-TAGT-A--AATCAATT-ATAA
*
26309113 TTAAAAGTAAATCAA-TATAA
1 TTAATAGTAAATCAATTATAA
*
26309133 CTTAATAGT-AATC-ATCAGTAAA
1 -TTAATAGTAAATCAATTA-T-AA
*
26309155 TTAATAGCT-AATCAATAATAA
1 TTAATAG-TAAATCAATTATAA
* * *
26309176 TTTAGTATAGTGAATTAGAGATATAA
1 -TTA--ATAGTAAATCA-A-TTATAA
*
26309202 CTTAATAGTATATCAATTATAA
1 -TTAATAGTAAATCAATTATAA
* * * *
26309224 TTTAGTAGTAAATTAGTAATAA
1 -TTAATAGTAAATCAATTATAA
* *
26309246 TATAATAGTCAAAGC-ATAATAA
1 T-TAATAGT-AAATCAATTATAA
*
26309268 CTTAATAATAAATCAATTATAA
1 -TTAATAGTAAATCAATTATAA
*
26309290 TATAATTGTAAAT
1 T-TAATAGTAAAT
26309303 GCATAATAAC
Statistics
Matches: 179, Mismatches: 33, Indels: 48
0.69 0.13 0.18
Matches are distributed among these distances:
19 1 0.01
20 8 0.04
21 32 0.18
22 87 0.49
23 11 0.06
24 21 0.12
25 12 0.07
26 7 0.04
ACGTcount: A:0.51, C:0.05, G:0.08, T:0.36
Consensus pattern (21 bp):
TTAATAGTAAATCAATTATAA
Found at i:26309311 original size:22 final size:22
Alignment explanation
Indices: 26309240--26309311 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
26309230 AGTAAATTAG
26309240 TAATAATATAATAGTCAAA-GCA
1 TAATAATATAATAGT-AAATGCA
*
26309262 TAATAACT-TAATAATAAAT-CAA
1 TAATAA-TATAATAGTAAATGC-A
* *
26309284 TTATAATATAATTGTAAATGCA
1 TAATAATATAATAGTAAATGCA
26309306 TAATAA
1 TAATAA
26309312 CATAGTTGTA
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
21 5 0.12
22 33 0.82
23 2 0.05
ACGTcount: A:0.54, C:0.07, G:0.06, T:0.33
Consensus pattern (22 bp):
TAATAATATAATAGTAAATGCA
Found at i:26309507 original size:22 final size:22
Alignment explanation
Indices: 26309446--26309500 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
26309436 TTTAGTTTAA
26309446 TAGTAATTAAATCATAAAT---T
1 TAGTAA-TAAATCATAAATAACT
*
26309466 TAGTAGTAAATCATAAATAACT
1 TAGTAATAAATCATAAATAACT
26309488 TAGTAATAAATCA
1 TAGTAATAAATCA
26309501 ATGATAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 12 0.40
20 5 0.17
22 13 0.43
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35
Consensus pattern (22 bp):
TAGTAATAAATCATAAATAACT
Found at i:26309605 original size:22 final size:22
Alignment explanation
Indices: 26309580--26309717 Score: 132
Period size: 22 Copynumber: 6.3 Consensus size: 22
26309570 CAATAGAGCA
*
26309580 GTAAATCATTAATAATTTAGTT
1 GTAAATCATTGATAATTTAGTT
* *
26309602 GTAAATTATTGATAATTTAGTA
1 GTAAATCATTGATAATTTAGTT
* * ** * *
26309624 GTAAATCACTAATAACGTAATA
1 GTAAATCATTGATAATTTAGTT
*
26309646 GTAAAACATTGATAATTTAGTT
1 GTAAATCATTGATAATTTAGTT
* *
26309668 GTAAAACATTGATAATTTATTT
1 GTAAATCATTGATAATTTAGTT
* * *
26309690 ATAAATTAATGATAATTTAGTT
1 GTAAATCATTGATAATTTAGTT
*
26309712 ATAAAT
1 GTAAAT
26309718 TAGTTAATTA
Statistics
Matches: 94, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 94 1.00
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.41
Consensus pattern (22 bp):
GTAAATCATTGATAATTTAGTT
Found at i:26309627 original size:44 final size:44
Alignment explanation
Indices: 26309579--26309710 Score: 147
Period size: 44 Copynumber: 3.0 Consensus size: 44
26309569 ACAATAGAGC
*
26309579 AGTAAATCATTAATAATTTAGTTGTAAATTATTGATAATTTAGT
1 AGTAAATCATTAATAATTTAATTGTAAATTATTGATAATTTAGT
* ** * **
26309623 AGTAAATCACTAATAACGTAATAGTAAAACATTGATAATTTAGT
1 AGTAAATCATTAATAATTTAATTGTAAATTATTGATAATTTAGT
* * * * * *
26309667 TGTAAAACATTGATAATTTATTTATAAATTAATGATAATTTAGT
1 AGTAAATCATTAATAATTTAATTGTAAATTATTGATAATTTAGT
26309711 TATAAATTAG
Statistics
Matches: 69, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
44 69 1.00
ACGTcount: A:0.44, C:0.05, G:0.11, T:0.41
Consensus pattern (44 bp):
AGTAAATCATTAATAATTTAATTGTAAATTATTGATAATTTAGT
Found at i:26309758 original size:22 final size:22
Alignment explanation
Indices: 26309730--26309882 Score: 73
Period size: 22 Copynumber: 7.0 Consensus size: 22
26309720 GTTAATTATT
26309730 AATAACTTTATAATAAATCATC
1 AATAACTTTATAATAAATCATC
* *
26309752 AATAACTTTATAGTAAATTAAT-
1 AATAACTTTATAATAAA-TCATC
** * * *
26309774 AATAACAGTAAAATAAATTATT
1 AATAACTTTATAATAAATCATC
* **
26309796 AATAA-TTTAATAGTAAATTTTC
1 AATAACTTT-ATAATAAATCATC
* * *
26309818 AATAA-TTTAGTAATATATCGTT
1 AATAACTTTA-TAATAAATCATC
* * *
26309840 TATAAC-TTAGTAGTAAATTATC
1 AATAACTTTA-TAATAAATCATC
*
26309862 TATAAC-TTAGTAATAAATCAT
1 AATAACTTTA-TAATAAATCAT
26309883 GATAATTTAG
Statistics
Matches: 100, Mismatches: 26, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
21 5 0.05
22 92 0.92
23 3 0.03
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (22 bp):
AATAACTTTATAATAAATCATC
Found at i:26309854 original size:44 final size:43
Alignment explanation
Indices: 26309718--26309900 Score: 142
Period size: 44 Copynumber: 4.2 Consensus size: 43
26309708 AGTTATAAAT
* * *
26309718 TAGTTAATTATTAATAACTTTA-TAATAAATCATCAATAACTTTA-
1 TAGTAAATTATCAATAAC-TTAGTAATAAATCAT-GATAA-TTTAG
* * *
26309762 TAGTAAATTAAT-AATAAC--AGTAAAATAAATTATTAATAATTTAA
1 TAGTAAATT-ATCAATAACTTAGT--AATAAATCA-TGATAATTTAG
* * * * * *
26309806 TAGTAAATTTTCAATAATTTAGTAATATATCGTTTATAACTTAG
1 TAGTAAATTATCAATAACTTAGTAATAAATC-ATGATAATTTAG
*
26309850 TAGTAAATTATCTATAACTTAGTAATAAATCATGATAATTTAG
1 TAGTAAATTATCAATAACTTAGTAATAAATCATGATAATTTAG
26309893 TAGTAAAT
1 TAGTAAAT
26309901 CAATGATAAG
Statistics
Matches: 112, Mismatches: 17, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 22 0.20
44 82 0.73
45 3 0.03
46 3 0.03
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (43 bp):
TAGTAAATTATCAATAACTTAGTAATAAATCATGATAATTTAG
Found at i:26309909 original size:22 final size:21
Alignment explanation
Indices: 26309841--26309909 Score: 84
Period size: 22 Copynumber: 3.2 Consensus size: 21
26309831 TATATCGTTT
* *
26309841 ATAACTTAGTAGTAAATTATCT
1 ATAACTTAGTAGTAAATCAT-G
*
26309863 ATAACTTAGTAATAAATCATG
1 ATAACTTAGTAGTAAATCATG
*
26309884 ATAATTTAGTAGTAAATCAATG
1 ATAACTTAGTAGTAAATC-ATG
26309906 ATAA
1 ATAA
26309910 GATAGTAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
21 16 0.39
22 25 0.61
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.36
Consensus pattern (21 bp):
ATAACTTAGTAGTAAATCATG
Found at i:26309915 original size:22 final size:21
Alignment explanation
Indices: 26309869--26309920 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
26309859 ATCTATAACT
**
26309869 TAGTAATAAATCATGATAATT
1 TAGTAATAAATCATGATAAGA
*
26309890 TAGTAGTAAATCAATGATAAGA
1 TAGTAATAAATC-ATGATAAGA
26309912 TAGTAATAA
1 TAGTAATAA
26309921 TTGAGTAGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.50, C:0.04, G:0.13, T:0.33
Consensus pattern (21 bp):
TAGTAATAAATCATGATAAGA
Found at i:26310373 original size:22 final size:22
Alignment explanation
Indices: 26310354--26310462 Score: 62
Period size: 22 Copynumber: 5.0 Consensus size: 22
26310344 GTATATCAAT
* *
26310354 GATAATTTTATAGTAAATCATC
1 GATAACTTCATAGTAAATCATC
*
26310376 GATAACTTCATAGTAAATTA-C
1 GATAACTTCATAGTAAATCATC
* * * * * *
26310397 TTATAAATTTATAATAAATTATT
1 -GATAACTTCATAGTAAATCATC
* *
26310420 AATAACTT-AGTACTAAATCATC
1 GATAACTTCA-TAGTAAATCATC
*
26310442 AATAACTT-AGTAGTAAATCAT
1 GATAACTTCA-TAGTAAATCAT
26310463 TCATCATTTA
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
21 2 0.03
22 68 0.97
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.39
Consensus pattern (22 bp):
GATAACTTCATAGTAAATCATC
Found at i:26310422 original size:11 final size:11
Alignment explanation
Indices: 26310389--26310503 Score: 72
Period size: 11 Copynumber: 10.5 Consensus size: 11
26310379 AACTTCATAG
26310389 TAAATTACTT-A
1 TAAATTA-TTAA
26310400 TAAATT-TATAA
1 TAAATTAT-TAA
26310411 TAAATTATTAA
1 TAAATTATTAA
* * *
26310422 TAACTTAGTAC
1 TAAATTATTAA
* *
26310433 TAAATCATCAA
1 TAAATTATTAA
* * *
26310444 TAACTTAGTAG
1 TAAATTATTAA
* *
26310455 TAAATCATTCA
1 TAAATTATTAA
* * *
26310466 TCATTTAGTAA
1 TAAATTATTAA
26310477 TAAATTATTAA
1 TAAATTATTAA
*
26310488 TAAATTAATAA
1 TAAATTATTAA
26310499 TAAAT
1 TAAAT
26310504 CACTGATAAT
Statistics
Matches: 74, Mismatches: 27, Indels: 6
0.69 0.25 0.06
Matches are distributed among these distances:
9 1 0.01
10 1 0.01
11 71 0.96
12 1 0.01
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.40
Consensus pattern (11 bp):
TAAATTATTAA
Found at i:26310437 original size:66 final size:66
Alignment explanation
Indices: 26310367--26310505 Score: 176
Period size: 66 Copynumber: 2.1 Consensus size: 66
26310357 AATTTTATAG
* * *
26310367 TAAATCATCGATAACTTCA-TAGTAAATTACTT-ATAAATTTA-TAATAAATTATTAATAACTTA
1 TAAATCATCAATAACTT-AGTAGTAAATCA-TTCAT-AATTTAGTAATAAATTATTAATAAATTA
* *
26310429 GTAC
63 ATAA
*
26310433 TAAATCATCAATAACTTAGTAGTAAATCATTCATCATTTAGTAATAAATTATTAATAAATTAATA
1 TAAATCATCAATAACTTAGTAGTAAATCATTCATAATTTAGTAATAAATTATTAATAAATTAATA
26310498 A
66 A
26310499 TAAATCA
1 TAAATCA
26310506 CTGATAATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
65 8 0.12
66 56 0.88
ACGTcount: A:0.47, C:0.10, G:0.04, T:0.38
Consensus pattern (66 bp):
TAAATCATCAATAACTTAGTAGTAAATCATTCATAATTTAGTAATAAATTATTAATAAATTAATA
A
Found at i:26310459 original size:44 final size:42
Alignment explanation
Indices: 26310407--26310540 Score: 124
Period size: 44 Copynumber: 3.0 Consensus size: 42
26310397 TTATAAATTT
* *
26310407 ATAATAAATTATTAATAACTTAGTACTAAATCATCAATAACTTA
1 ATAATAAATCATTAATAA-TTAGTAATAAATCAT-AATAACTTA
* * * * * *
26310451 GTAGTAAATCATTCATCATTTAGTAATAAATTATTAATAAATTA
1 ATAATAAATCATTAAT-AATTAGTAATAAATCA-TAATAACTTA
* *
26310495 ATAATAAATCACTGATAATATAGTAATAAATCAATAATAACTTA
1 ATAATAAATCATTAATAAT-TAGTAATAAATC-ATAATAACTTA
26310539 AT
1 AT
26310541 TGTCAATTGA
Statistics
Matches: 71, Mismatches: 15, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
43 2 0.03
44 66 0.93
45 3 0.04
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (42 bp):
ATAATAAATCATTAATAATTAGTAATAAATCATAATAACTTA
Found at i:26310473 original size:22 final size:22
Alignment explanation
Indices: 26310408--26310538 Score: 99
Period size: 22 Copynumber: 6.0 Consensus size: 22
26310398 TATAAATTTA
* *
26310408 TAATAAATTATTAATAACTTAG
1 TAATAAATCATCAATAACTTAG
*
26310430 TACTAAATCATCAATAACTTAG
1 TAATAAATCATCAATAACTTAG
* * *
26310452 TAGTAAATCATTC-ATCATTTAG
1 TAATAAATCA-TCAATAACTTAG
* * * *
26310474 TAATAAATTATTAATAAATTAA
1 TAATAAATCATCAATAACTTAG
*
26310496 TAATAAATCA-CTGATAA-TATAG
1 TAATAAATCATC-AATAACT-TAG
26310518 TAATAAATCAAT-AATAACTTA
1 TAATAAATC-ATCAATAACTTA
26310539 ATTGTCAATT
Statistics
Matches: 85, Mismatches: 17, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
21 2 0.02
22 79 0.93
23 4 0.05
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.37
Consensus pattern (22 bp):
TAATAAATCATCAATAACTTAG
Found at i:26310519 original size:66 final size:65
Alignment explanation
Indices: 26310403--26310527 Score: 164
Period size: 66 Copynumber: 1.9 Consensus size: 65
26310393 TTACTTATAA
* * * *
26310403 ATTTATAATAAATTATTAATAACTTAGTACTAAATCATCAATAACTTAGTAGTAAATCATTCATC
1 ATTTATAATAAATTATTAATAAATTAATAATAAATCATCAATAACTTAGTAATAAATCATTCATC
*
26310468 ATTTAGTAATAAATTATTAATAAATTAATAATAAATCA-CTGATAA-TATAGTAATAAATCA
1 ATTTA-TAATAAATTATTAATAAATTAATAATAAATCATC-AATAACT-TAGTAATAAATCA
26310528 ATAATAACTT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
65 7 0.13
66 45 0.87
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.38
Consensus pattern (65 bp):
ATTTATAATAAATTATTAATAAATTAATAATAAATCATCAATAACTTAGTAATAAATCATTCATC
Found at i:26310532 original size:11 final size:11
Alignment explanation
Indices: 26310474--26310534 Score: 52
Period size: 11 Copynumber: 5.5 Consensus size: 11
26310464 CATCATTTAG
* *
26310474 TAATAAATTAT
1 TAATAAATCAA
*
26310485 TAATAAATTAA
1 TAATAAATCAA
*
26310496 TAATAAATCAC
1 TAATAAATCAA
* *
26310507 TGATAATAT-AG
1 TAATAA-ATCAA
26310518 TAATAAATCAA
1 TAATAAATCAA
26310529 TAATAA
1 TAATAA
26310535 CTTAATTGTC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
10 2 0.05
11 37 0.90
12 2 0.05
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.34
Consensus pattern (11 bp):
TAATAAATCAA
Found at i:26311129 original size:23 final size:21
Alignment explanation
Indices: 26311080--26311141 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 21
26311070 GATTGTAAGG
*
26311080 ATTTTTATTCATTTTTATTTTAG
1 ATTTTTATT--TTTTTATTTTAC
26311103 ATTTTTTTATTTTTTTA-TTTATC
1 A--TTTTTATTTTTTTATTTTA-C
26311126 ATTTTTATTTTTTTAT
1 ATTTTTATTTTTTTAT
26311142 GATCTATTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
21 14 0.41
22 4 0.12
23 8 0.24
25 8 0.24
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.76
Consensus pattern (21 bp):
ATTTTTATTTTTTTATTTTAC
Found at i:26311150 original size:21 final size:21
Alignment explanation
Indices: 26311106--26311150 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
26311096 ATTTTAGATT
*
26311106 TTTTTATTTTTTTATTTATCA
1 TTTTTATTTTTTTATTGATCA
26311127 TTTTTATTTTTTTA-TGATCTA
1 TTTTTATTTTTTTATTGATC-A
26311148 TTT
1 TTT
26311151 ATTGTTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTTTATTTTTTTATTGATCA
Found at i:26312999 original size:57 final size:59
Alignment explanation
Indices: 26312894--26313155 Score: 265
Period size: 58 Copynumber: 4.5 Consensus size: 59
26312884 TTTTTTTTTT
* * * *
26312894 GAAAAAATTAAAAGTATTAATTTTT-TTTAGAATAAAGTTTTCTAAAAAATATTTTTAA
1 GAAAAAATTGAAAGTATCAATTTTTCTTAAAAATAAAGTTTTCTAAAAAATATTTTTAA
*
26312952 GAAAAAATTGAAAGTATCAATTTTTCTTAAAAAT-AAGTTTTCTAAAAAATATTTTCAA
1 GAAAAAATTGAAAGTATCAATTTTTCTTAAAAATAAAGTTTTCTAAAAAATATTTTTAA
* * *
26313010 GAAAAAGTTGAAAGTAT-AAATTTTCTTTAAAAAT-AA-TTTTCTAAAAAAAGGTTTTTTTGAA
1 GAAAAAATTGAAAGTATCAATTTTTC-TTAAAAATAAAGTTTTCT-AAAAAA--TATTTTT-AA
* * * *
26313071 G-AAAATTTGAAAGTATCAA-TTTTCTTCGAAATTAAAG-TTTC-AGAAAAATATTTTGAA
1 GAAAAAATTGAAAGTATCAATTTTTCTT-AAAAATAAAGTTTTCTA-AAAAATATTTTTAA
* *
26313128 G-AAAAGTTGAAAGTATCAATATTTCTTA
1 GAAAAAATTGAAAGTATCAATTTTTCTTA
26313156 TACAAAAGCA
Statistics
Matches: 175, Mismatches: 17, Indels: 25
0.81 0.08 0.12
Matches are distributed among these distances:
57 33 0.19
58 89 0.51
59 9 0.05
60 33 0.19
61 11 0.06
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.39
Consensus pattern (59 bp):
GAAAAAATTGAAAGTATCAATTTTTCTTAAAAATAAAGTTTTCTAAAAAATATTTTTAA
Found at i:26313121 original size:118 final size:116
Alignment explanation
Indices: 26312894--26313154 Score: 293
Period size: 118 Copynumber: 2.2 Consensus size: 116
26312884 TTTTTTTTTT
* * * * *
26312894 GAAAAAATTAAAAGTATTAATTTTTTTTAGAATAAAGTTTTCTAAAAAATATTTTTAAGAAAAAA
1 GAAAAAGTTGAAAGTATAAATTTTCTTTAGAATAAAATTTTCTAAAAAATATTTTTAAGAAAAAA
26312959 TTGAAAGTATCAATTTTTCTTAAAAATAAGTTTTCTAAAAAATATTTTCAA
66 TTGAAAGTATCAATTTTTCTTAAAAATAAGTTTTCTAAAAAATATTTTCAA
*
26313010 GAAAAAGTTGAAAGTATAAATTTTCTTTA-AA-AATAATTTTCTAAAAAAAGGTTTTTTTGAAG-
1 GAAAAAGTTGAAAGTATAAATTTTCTTTAGAATAA-AATTTTCT-AAAAAA--TATTTTT-AAGA
* * * *
26313072 AAAATTTGAAAGTATCAA-TTTTCTTCGAAATTAAAG-TTTC-AGAAAAATATTTTGAA
61 AAAAATTGAAAGTATCAATTTTTCTT-AAAAAT-AAGTTTTCTA-AAAAATATTTTCAA
*
26313128 G-AAAAGTTGAAAGTATCAATATTTCTT
1 GAAAAAGTTGAAAGTATAAAT-TTTCTT
26313155 ATACAAAAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
114 2 0.02
115 9 0.07
116 31 0.25
117 26 0.21
118 51 0.41
119 6 0.05
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.39
Consensus pattern (116 bp):
GAAAAAGTTGAAAGTATAAATTTTCTTTAGAATAAAATTTTCTAAAAAATATTTTTAAGAAAAAA
TTGAAAGTATCAATTTTTCTTAAAAATAAGTTTTCTAAAAAATATTTTCAA
Found at i:26315050 original size:18 final size:18
Alignment explanation
Indices: 26315027--26315064 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
26315017 TTATAGTCAA
26315027 AAAAAT-TAAAAAAAGAAG
1 AAAAATATAAAAAAA-AAG
26315045 AAAAATATAAAAAAAAAG
1 AAAAATATAAAAAAAAAG
26315063 AA
1 AA
26315065 TGAAGATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.11
Consensus pattern (18 bp):
AAAAATATAAAAAAAAAG
Found at i:26315129 original size:16 final size:16
Alignment explanation
Indices: 26315108--26315140 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26315098 GAAAACTTCT
26315108 AAAAAGAATCAAAATA
1 AAAAAGAATCAAAATA
26315124 AAAAAGAATCAAAATA
1 AAAAAGAATCAAAATA
26315140 A
1 A
26315141 GGAAACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAAAGAATCAAAATA
Found at i:26320870 original size:154 final size:154
Alignment explanation
Indices: 26320688--26320976 Score: 440
Period size: 154 Copynumber: 1.9 Consensus size: 154
26320678 ACCAAAACAG
* *
26320688 AGATTGAATTCTAAGTAATAAAATCAAGCTTTAAAAT-TTAATCCTAAATTTATATATTATT-TT
1 AGATTGAATTCTAAGTAATAAAATCAAGCCTTAAAATCCTAATCCTAAATTTATATATTATTATT
* * * * * *
26320751 TCCTTTTCCACTAAATATTTTTTGTCGTGGTATAGCTTAGAAAATATTTCTGCTAAA-ACACCCT
66 TCATTTT-CACTAAATA-TTTTTGTCATAGTACAACATAGAAAATATTTCTGCTAAACA-ACCCT
26320815 TTTTGAAAAAATGTCAAAATGAACCAA
128 TTTTGAAAAAATGTCAAAATGAACCAA
*
26320842 AGATTGAATTCTAAGTAATAAAATCAAGCCTTAAAATCCTAATCCTAAATTTATGTATTATTATT
1 AGATTGAATTCTAAGTAATAAAATCAAGCCTTAAAATCCTAATCCTAAATTTATATATTATTATT
*
26320907 TCATTTTCATTAAATATTTTTGTCATAGTACAACATAGAAAATATTTCTGCTAAACAACCCTTTT
66 TCATTTTCACTAAATATTTTTGTCATAGTACAACATAGAAAATATTTCTGCTAAACAACCCTTTT
26320972 TGAAA
131 TGAAA
26320977 TTTCCCCAAT
Statistics
Matches: 122, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
154 83 0.68
155 31 0.25
156 8 0.07
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (154 bp):
AGATTGAATTCTAAGTAATAAAATCAAGCCTTAAAATCCTAATCCTAAATTTATATATTATTATT
TCATTTTCACTAAATATTTTTGTCATAGTACAACATAGAAAATATTTCTGCTAAACAACCCTTTT
TGAAAAAATGTCAAAATGAACCAA
Found at i:26328733 original size:24 final size:25
Alignment explanation
Indices: 26328677--26328747 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 25
26328667 CAGATATCTC
* *
26328677 ATTTTTTTAATT-AATTAAATAATA
1 ATTTTTTAAATTAAATTAAATTATA
*
26328701 ATATATTTAAATTAAATTAAATTA-A
1 AT-TTTTTAAATTAAATTAAATTATA
*
26328726 ATTTTTTATATTTAAA-TAAATT
1 ATTTTTTA-AATTAAATTAAATT
26328748 TTTTAAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
24 13 0.33
25 17 0.44
26 9 0.23
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTTTTTAAATTAAATTAAATTATA
Found at i:26328760 original size:20 final size:21
Alignment explanation
Indices: 26328716--26328761 Score: 69
Period size: 19 Copynumber: 2.3 Consensus size: 21
26328706 TTTAAATTAA
*
26328716 ATTAAATTAAATTTTTTATAT
1 ATTAAATTAAATTTTTTAAAT
26328737 -TTAAA-TAAATTTTTTAAAT
1 ATTAAATTAAATTTTTTAAAT
26328756 ATTAAA
1 ATTAAA
26328762 ATATTATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTAAATTAAATTTTTTAAAT
Found at i:26329443 original size:26 final size:25
Alignment explanation
Indices: 26329413--26329463 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
26329403 AAACTTTCTC
26329413 AATTTAGGAATAATGGAAAAATATTT
1 AATTTAGGAATAATGGAAAAA-ATTT
26329439 AATTTAGGAATAATGGAAAAAATTT
1 AATTTAGGAATAATGGAAAAAATTT
26329464 TGGCGGTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.51, C:0.00, G:0.16, T:0.33
Consensus pattern (25 bp):
AATTTAGGAATAATGGAAAAAATTT
Found at i:26330169 original size:3 final size:3
Alignment explanation
Indices: 26330163--26330197 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
26330153 TGATGATGCG
26330163 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
26330198 AGTTTTGCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:26346873 original size:12 final size:12
Alignment explanation
Indices: 26346840--26346887 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
26346830 CAGTGATGGG
26346840 TAATTATTT-TT
1 TAATTATTTATT
*
26346851 TAATTAATTATT
1 TAATTATTTATT
*
26346863 TAATTTTTTATT
1 TAATTATTTATT
26346875 TATATATATTTAT
1 TA-AT-TATTTAT
26346888 ACAATGATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 8 0.27
12 14 0.47
13 2 0.07
14 6 0.20
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TAATTATTTATT
Found at i:26346902 original size:30 final size:30
Alignment explanation
Indices: 26346863--26346936 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 30
26346853 ATTAATTATT
* *
26346863 TAAT-TTTTTATTTATATATATTTATACAA
1 TAATATTTTTATTTATATATATTTAAAAAA
* ** *
26346892 TGATATTTTTAAATATTTATATTTAAAAAA
1 TAATATTTTTATTTATATATATTTAAAAAA
26346922 TAATATTTTATATTT
1 TAATATTTT-TATTT
26346937 TTAAAAAAAT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
29 3 0.09
30 28 0.82
31 3 0.09
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (30 bp):
TAATATTTTTATTTATATATATTTAAAAAA
Found at i:26346933 original size:21 final size:22
Alignment explanation
Indices: 26346903--26346976 Score: 109
Period size: 21 Copynumber: 3.5 Consensus size: 22
26346893 GATATTTTTA
26346903 AATA-TTTATA-TTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
*
26346923 AATATTTTATATTTTTAAAAA-
1 AATATTTTATATTTTAAAAAAT
26346944 AATATTTTATATTTTTAAAAAAT
1 AATATTTTATA-TTTTAAAAAAT
26346967 AATATTTTAT
1 AATATTTTAT
26346977 TAATTTCGAG
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
20 4 0.08
21 17 0.35
22 17 0.35
23 10 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:26346943 original size:23 final size:23
Alignment explanation
Indices: 26346913--26346976 Score: 114
Period size: 21 Copynumber: 2.9 Consensus size: 23
26346903 AATATTTATA
26346913 TTTAAAAAATAATATTTTATATT
1 TTTAAAAAATAATATTTTATATT
26346936 TTT-AAAAA-AATATTTTATATT
1 TTTAAAAAATAATATTTTATATT
26346957 TTTAAAAAATAATATTTTAT
1 TTTAAAAAATAATATTTTAT
26346977 TAATTTCGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
21 16 0.41
22 10 0.26
23 13 0.33
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTAAAAAATAATATTTTATATT
Found at i:26346977 original size:21 final size:21
Alignment explanation
Indices: 26346903--26346977 Score: 91
Period size: 22 Copynumber: 3.5 Consensus size: 21
26346893 GATATTTTTA
*
26346903 AATA-TTTATATTTAAAAAAT
1 AATATTTTATTTTTAAAAAAT
*
26346923 AATATTTTATATTTTTAAAAA-
1 AATATTTTAT-TTTTAAAAAAT
26346944 AATATTTTATATTTTTAAAAAAT
1 AATA-TTT-TATTTTTAAAAAAT
26346967 AATATTTTATT
1 AATATTTTATT
26346978 AATTTCGAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
20 4 0.09
21 13 0.28
22 23 0.49
23 7 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
AATATTTTATTTTTAAAAAAT
Found at i:26350938 original size:125 final size:126
Alignment explanation
Indices: 26350691--26350941 Score: 495
Period size: 126 Copynumber: 2.0 Consensus size: 126
26350681 TTGCATAGAA
26350691 CCAACAACAATTCTATTATTTGTTTTTTTATGGTAAAAAGAGGCCATAGCTTGGGGATAGGGAGA
1 CCAACAACAATTCTATTATTTGTTTTTTTATGGTAAAAAGAGGCCATAGCTTGGGGATAGGGAGA
26350756 AGGTAGCTACATAAACCAAGTTAAATTCCAGATTTTATTATTTGGTTTTATACATACATAT
66 AGGTAGCTACATAAACCAAGTTAAATTCCAGATTTTATTATTTGGTTTTATACATACATAT
26350817 CCAACAACAATTCTATTATTTGTTTTTTTATGGTAAAAAGAGGCCATAGCTTGGGGATAGGGAGA
1 CCAACAACAATTCTATTATTTGTTTTTTTATGGTAAAAAGAGGCCATAGCTTGGGGATAGGGAGA
26350882 AGGTAGCTACAT-AACCAAGTTAAATTCCAGATTTTATTATTTGGTTTTATACATACATAT
66 AGGTAGCTACATAAACCAAGTTAAATTCCAGATTTTATTATTTGGTTTTATACATACATAT
26350942 TATAGAGTTT
Statistics
Matches: 125, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
125 48 0.38
126 77 0.62
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.36
Consensus pattern (126 bp):
CCAACAACAATTCTATTATTTGTTTTTTTATGGTAAAAAGAGGCCATAGCTTGGGGATAGGGAGA
AGGTAGCTACATAAACCAAGTTAAATTCCAGATTTTATTATTTGGTTTTATACATACATAT
Found at i:26357933 original size:52 final size:52
Alignment explanation
Indices: 26357843--26357980 Score: 170
Period size: 52 Copynumber: 2.7 Consensus size: 52
26357833 AAAAAAAAAA
* * *
26357843 TTTAAGAGAAAAAA-ATTCTTAATAAGTAAGTTTGACTTACAAGAAAAGAAT
1 TTTAAAAGAAAAAAGATTCTTAATAGGTAAGTTTAACTTACAAGAAAAGAAT
* * *
26357894 TTTAAAAGAAAAAAGATTTTTAATAGGTAAATTTAACTTACAAGAGAAGAAT
1 TTTAAAAGAAAAAAGATTCTTAATAGGTAAGTTTAACTTACAAGAAAAGAAT
* * * * *
26357946 TCTAAAAGGAGAAGGATTCTTAATGGGTAAGTTTA
1 TTTAAAAGAAAAAAGATTCTTAATAGGTAAGTTTA
26357981 TATGGTTATA
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
51 13 0.18
52 60 0.82
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.30
Consensus pattern (52 bp):
TTTAAAAGAAAAAAGATTCTTAATAGGTAAGTTTAACTTACAAGAAAAGAAT
Found at i:26359734 original size:6 final size:6
Alignment explanation
Indices: 26359723--26359769 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
26359713 TGTGACATAC
* *
26359723 ATGTAT ATGTAT ATGTAT ATGTAT ATGCAT ATGTAT ATGCAT ATGTA
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTA
26359770 CTAATGAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (6 bp):
ATGTAT
Found at i:26377499 original size:32 final size:32
Alignment explanation
Indices: 26377463--26377529 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
26377453 AAGTAACAGG
26377463 AATGCCTGCATTATACTTGCATATCGGCAAAC
1 AATGCCTGCATTATACTTGCATATCGGCAAAC
*
26377495 AATGCCTGCATTATACTTGCATGTCGGCAAAC
1 AATGCCTGCATTATACTTGCATATCGGCAAAC
26377527 AAT
1 AAT
26377530 CATCCATCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (32 bp):
AATGCCTGCATTATACTTGCATATCGGCAAAC
Found at i:26381469 original size:34 final size:33
Alignment explanation
Indices: 26381414--26381478 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
26381404 TAGACATGAT
* * *
26381414 CATACGGCCTTGCTAATGGGTTATAGTAGTTAG
1 CATAAGGCCTTGCTAACGGGTTATAATAGTTAG
26381447 CATAAGGCCTTGGCTAACGGGTTATAATAGTT
1 CATAAGGCCTT-GCTAACGGGTTATAATAGTT
26381479 GCAATGATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 10 0.36
34 18 0.64
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (33 bp):
CATAAGGCCTTGCTAACGGGTTATAATAGTTAG
Found at i:26381621 original size:47 final size:48
Alignment explanation
Indices: 26381560--26381651 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
26381550 TAAATTAATG
* * *
26381560 ATAATGATGATTTATGATGA-TTTTAAAGATTGATCTATGATTTGTAT
1 ATAAAGATGATTTATAAAGATTTTTAAAGATTGATCTATGATTTGTAT
*
26381607 ATAAAGATGATTTATAAAGATTTTTAATGATTGATCTATGATTTG
1 ATAAAGATGATTTATAAAGATTTTTAAAGATTGATCTATGATTTG
26381652 GTTTGATTAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 17 0.43
48 23 0.57
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.46
Consensus pattern (48 bp):
ATAAAGATGATTTATAAAGATTTTTAAAGATTGATCTATGATTTGTAT
Found at i:26386799 original size:48 final size:47
Alignment explanation
Indices: 26386708--26386799 Score: 121
Period size: 48 Copynumber: 1.9 Consensus size: 47
26386698 AAAACTAACG
* * *
26386708 ATAATGATGATTTATGATGATTTTAAAGATGGATCCATAATTTGTAT
1 ATAAAGATGATTTATAAAGATTTTAAAGATGGATCCATAATTTGTAT
* * *
26386755 ATAAAGATGATTTATAAAGATTTTTAATGATTGATCCATGATTTG
1 ATAAAGATGATTTATAAAGA-TTTTAAAGATGGATCCATAATTTG
26386800 GTTTGATTAC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
47 17 0.45
48 21 0.55
ACGTcount: A:0.37, C:0.04, G:0.16, T:0.42
Consensus pattern (47 bp):
ATAAAGATGATTTATAAAGATTTTAAAGATGGATCCATAATTTGTAT
Found at i:26388897 original size:23 final size:24
Alignment explanation
Indices: 26388839--26388897 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
26388829 AAATTTACAC
26388839 TTAATTTATAAAATATTATATATT
1 TTAATTTATAAAATATTATATATT
** *
26388863 TTAATCCA-AAAATTTTATA-ATT
1 TTAATTTATAAAATATTATATATT
*
26388885 TTATTTTATAAAA
1 TTAATTTATAAAA
26388898 ATATCTCATA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
22 8 0.29
23 14 0.50
24 6 0.21
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAATTTATAAAATATTATATATT
Found at i:26391320 original size:21 final size:22
Alignment explanation
Indices: 26391290--26391346 Score: 82
Period size: 21 Copynumber: 2.7 Consensus size: 22
26391280 ACAATATAAG
26391290 TAAAA-TTTAATAACTTTTCG-
1 TAAAATTTTAATAACTTTTCGA
* *
26391310 TATAATTTTAATAACTTTTTGA
1 TAAAATTTTAATAACTTTTCGA
26391332 TAAAATTTTAATAAC
1 TAAAATTTTAATAAC
26391347 ATTGATTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
20 4 0.12
21 14 0.44
22 14 0.44
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (22 bp):
TAAAATTTTAATAACTTTTCGA
Found at i:26391358 original size:20 final size:21
Alignment explanation
Indices: 26391295--26391360 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
26391285 ATAAGTAAAA
*
26391295 TTTAATAACTTTTCG-TATAAT
1 TTTAATAACTATT-GATATAAT
* *
26391316 TTTAATAACTTTTTGATAAAAT
1 TTTAATAAC-TATTGATATAAT
*
26391338 TTTAATAAC-ATTGATTTAAT
1 TTTAATAACTATTGATATAAT
26391358 TTT
1 TTT
26391361 GGTAATTTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
20 11 0.28
21 10 0.26
22 18 0.46
ACGTcount: A:0.36, C:0.06, G:0.05, T:0.53
Consensus pattern (21 bp):
TTTAATAACTATTGATATAAT
Found at i:26392040 original size:22 final size:22
Alignment explanation
Indices: 26392015--26392099 Score: 68
Period size: 22 Copynumber: 3.9 Consensus size: 22
26392005 TTACATGTGA
26392015 ATTATCAATGATTTACTATTAT
1 ATTATCAATGATTTACTATTAT
* * *
26392037 ATTAT-TATGCACTTATTATTAT
1 ATTATCAATG-ATTTACTATTAT
* *
26392059 ATTATCATTGAATTACTACTTAGT
1 ATTATCAATGATTTACTA-TTA-T
*
26392083 -TT-TCAATTATTTACTAT
1 ATTATCAATGATTTACTAT
26392100 AAAATCATCA
Statistics
Matches: 49, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
21 4 0.08
22 37 0.76
23 7 0.14
24 1 0.02
ACGTcount: A:0.33, C:0.11, G:0.05, T:0.52
Consensus pattern (22 bp):
ATTATCAATGATTTACTATTAT
Found at i:26392137 original size:22 final size:22
Alignment explanation
Indices: 26392112--26392189 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 22
26392102 AATCATCACA
*
26392112 AATTTATTAATAAATTAACCAT
1 AATTTATTATTAAATTAACCAT
* * *
26392134 AATTCATTATTAAGTT-ATCACT
1 AATTTATTATTAAATTAACCA-T
* *
26392156 AATTTA-TATTAAACTATCCAT
1 AATTTATTATTAAATTAACCAT
*
26392177 AATTTACTATTAA
1 AATTTATTATTAA
26392190 GTCATTTAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
21 17 0.39
22 27 0.61
ACGTcount: A:0.44, C:0.12, G:0.01, T:0.44
Consensus pattern (22 bp):
AATTTATTATTAAATTAACCAT
Found at i:26392188 original size:43 final size:44
Alignment explanation
Indices: 26392091--26392194 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 44
26392081 GTTTTCAATT
* * *
26392091 ATTTACTATAAAATCATCACAAATTTATTAATAAATTAACCATA
1 ATTTACTATTAAGTCATCACAAATTTATTAATAAACTAACCATA
* * * * * *
26392135 ATTCATTATTAAGTTATCACTAATTTA-TATTAAACTATCCATA
1 ATTTACTATTAAGTCATCACAAATTTATTAATAAACTAACCATA
26392178 ATTTACTATTAAGTCAT
1 ATTTACTATTAAGTCAT
26392195 TTAATTATTA
Statistics
Matches: 48, Mismatches: 12, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
43 27 0.56
44 21 0.44
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.41
Consensus pattern (44 bp):
ATTTACTATTAAGTCATCACAAATTTATTAATAAACTAACCATA
Found at i:26392296 original size:22 final size:22
Alignment explanation
Indices: 26392222--26392468 Score: 169
Period size: 22 Copynumber: 11.2 Consensus size: 22
26392212 TATGATTAAC
26392222 TACTACTAAATTAT-ATTGATT
1 TACTACTAAATTATCATTGATT
** * *
26392243 TACTTTTAAATTTTCAATGATT
1 TACTACTAAATTATCATTGATT
* * *
26392265 AAGTATTAAATTATCATTGATT
1 TACTACTAAATTATCATTGATT
* *
26392287 TGCTACTAAATTAT-TTATGATT
1 TACTACTAAATTATCAT-TGATT
* *
26392309 TACTACTAAATTTGTCAATT-AAT
1 TACTACTAAA-TTATC-ATTGATT
** *
26392332 TACTACTAAATTAAAATTAATT
1 TACTACTAAATTATCATTGATT
*
26392354 TACTACTAAATTATCATTAATT
1 TACTACTAAATTATCATTGATT
* *
26392376 TACTATTAAGTTATCATTGATT
1 TACTACTAAATTATCATTGATT
* * * * *
26392398 TATTATTAAGTTATTAATGATT
1 TACTACTAAATTATCATTGATT
* * * *
26392420 AACTACTAATTTATTAATTGTTT
1 TACTACTAAATTA-TCATTGATT
* * *
26392443 TTC-ATTAACTTATCATTGATT
1 TACTACTAAATTATCATTGATT
26392464 TACTA
1 TACTA
26392469 ATACACTGTT
Statistics
Matches: 174, Mismatches: 44, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
21 24 0.14
22 126 0.72
23 22 0.13
24 1 0.01
25 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.49
Consensus pattern (22 bp):
TACTACTAAATTATCATTGATT
Found at i:26392307 original size:44 final size:45
Alignment explanation
Indices: 26392207--26392316 Score: 118
Period size: 44 Copynumber: 2.4 Consensus size: 45
26392197 AATTATTAAG
**
26392207 TTATTTATGATTAACTACTACTAAATTATATTGATTTACTTTTAAA
1 TTATTTATGATTAACTACTA-TAAATTATATTGATTTACTACTAAA
* * *
26392253 TT-TTCAATGATTAAGTA-T-TAAATTATCATTGATTTGCTACTAAA
1 TTATT-TATGATTAACTACTATAAATTAT-ATTGATTTACTACTAAA
*
26392297 TTATTTATGATTTACTACTA
1 TTATTTATGATTAACTACTA
26392317 AATTTGTCAA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
43 8 0.16
44 25 0.49
45 6 0.12
46 12 0.24
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.49
Consensus pattern (45 bp):
TTATTTATGATTAACTACTATAAATTATATTGATTTACTACTAAA
Found at i:26392360 original size:67 final size:65
Alignment explanation
Indices: 26392222--26392380 Score: 176
Period size: 67 Copynumber: 2.4 Consensus size: 65
26392212 TATGATTAAC
** * * * ** *
26392222 TACTACTAAATTATATTGATTTACTTTTAAATTTTCAATGATTAAGTATTAAATTATCATTGATT
1 TACTACTAAATTATATTGATTTACTACTAAATTTTCAATAATTAACTACTAAATTAAAATTAATT
* *
26392287 TGCTACTAAATTATTTATGATTTACTACTAAATTTGTCAATTAATT-ACTACTAAATTAAAATTA
1 TACTACTAAATTATAT-TGATTTACTACTAAATTT-TCAA-TAATTAACTACTAAATTAAAATTA
26392351 ATT
63 ATT
*
26392354 TACTACTAAATTATCATTAATTTACTA
1 TACTACTAAATTAT-ATTGATTTACTA
26392381 TTAAGTTATC
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
65 14 0.18
66 16 0.21
67 42 0.55
68 5 0.06
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (65 bp):
TACTACTAAATTATATTGATTTACTACTAAATTTTCAATAATTAACTACTAAATTAAAATTAATT
Found at i:26392390 original size:111 final size:110
Alignment explanation
Indices: 26392216--26392428 Score: 264
Period size: 111 Copynumber: 1.9 Consensus size: 110
26392206 GTTATTTATG
* * ** * * *
26392216 ATTAACTACTACTAAATTATATTGATTTACTTTTAAATTTTCAATGATTAAGTATTAAATTATCA
1 ATTAACTACTACTAAATTAAATTAATTTACTACTAAATTATCAATAATTAACTATTAAATTATCA
* * *
26392281 TTGATTTGCTACTAAATTATTTATGATTTACTACTAAATTTGTCA
66 TTGATTTACTACTAAATTATTAATGATTAACTACTAAATTTGTCA
* * * *
26392326 ATTAATTACTACTAAATTAAAATTAATTTACTACTAAATTATCATTAATTTACTATTAAGTTATC
1 ATTAACTACTACTAAATT-AAATTAATTTACTACTAAATTATCAATAATTAACTATTAAATTATC
* * *
26392391 ATTGATTTATTATTAAGTTATTAATGATTAACTACTAA
65 ATTGATTTACTACTAAATTATTAATGATTAACTACTAA
26392429 TTTATTAATT
Statistics
Matches: 85, Mismatches: 17, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
110 17 0.20
111 68 0.80
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.46
Consensus pattern (110 bp):
ATTAACTACTACTAAATTAAATTAATTTACTACTAAATTATCAATAATTAACTATTAAATTATCA
TTGATTTACTACTAAATTATTAATGATTAACTACTAAATTTGTCA
Found at i:26392695 original size:22 final size:22
Alignment explanation
Indices: 26392670--26392793 Score: 106
Period size: 22 Copynumber: 5.6 Consensus size: 22
26392660 ATATAAAAAG
* *
26392670 TTATCAATGATTAACAATTAAG
1 TTATCAATGATTTACAATTAAA
* * * *
26392692 TTATTAGTTATTTACTATTAAA
1 TTATCAATGATTTACAATTAAA
**
26392714 TTATCAATGATTTATTATTAAA
1 TTATCAATGATTTACAATTAAA
* * *
26392736 TTATCAATTATTTAC-TTCTAAT
1 TTATCAATGATTTACAAT-TAAA
*
26392758 TTATGAATGATTTACTAATTAAA
1 TTATCAATGATTTAC-AATTAAA
*
26392781 TTATGAATGATTT
1 TTATCAATGATTT
26392794 TTATTAAATT
Statistics
Matches: 81, Mismatches: 18, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
21 1 0.01
22 63 0.78
23 16 0.20
24 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (22 bp):
TTATCAATGATTTACAATTAAA
Found at i:26392734 original size:44 final size:44
Alignment explanation
Indices: 26392670--26392805 Score: 141
Period size: 44 Copynumber: 3.1 Consensus size: 44
26392660 ATATAAAAAG
* * * *
26392670 TTATCAATGATTAACAATTAAGTTATTAGTTATTTACTATTAAA
1 TTATCAATGATTTATAATTAAATTATTAATTATTTACTATTAAA
* * *
26392714 TTATCAATGATTTATTATTAAATTATCAATTATTTACT-TCTAAT
1 TTATCAATGATTTATAATTAAATTATTAATTATTTACTAT-TAAA
* * * *
26392758 TTATGAATGATTTACTAATTAAATTATGAATGATTT-TTATTAAA
1 TTATCAATGATTTA-TAATTAAATTATTAATTATTTACTATTAAA
26392802 TTAT
1 TTAT
26392806 TGGTGATTTA
Statistics
Matches: 76, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
43 1 0.01
44 56 0.74
45 19 0.25
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.49
Consensus pattern (44 bp):
TTATCAATGATTTATAATTAAATTATTAATTATTTACTATTAAA
Found at i:26392814 original size:21 final size:21
Alignment explanation
Indices: 26392707--26392805 Score: 92
Period size: 22 Copynumber: 4.5 Consensus size: 21
26392697 AGTTATTTAC
*
26392707 TATTAAATTATCAATGATTTAT
1 TATTAAATTATGAATGATTT-T
* *
26392729 TATTAAATTATCAATTATTTACT
1 TATTAAATTATGAATGATTT--T
* *
26392752 T-CTAATTTATGAATGATTTACT
1 TATTAAATTATGAATGATTT--T
*
26392774 AATTAAATTATGAATGATTTT
1 TATTAAATTATGAATGATTTT
26392795 TATTAAATTAT
1 TATTAAATTAT
26392806 TGGTGATTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
21 11 0.17
22 36 0.55
23 18 0.28
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (21 bp):
TATTAAATTATGAATGATTTT
Found at i:26393016 original size:22 final size:22
Alignment explanation
Indices: 26392991--26393440 Score: 126
Period size: 22 Copynumber: 20.5 Consensus size: 22
26392981 TTAGTTATTA
*
26392991 ATTTACTATTAAGTTATCAATG
1 ATTTACTATTAAATTATCAATG
* * *
26393013 ATTTACTATTATATTTTTTTATAT-
1 ATTTACTATTA-A-ATTATCA-ATG
* *** *
26393037 ATTTACTGTTATGCTATCATTG
1 ATTTACTATTAAATTATCAATG
* ** *
26393059 ATTTACTACTT-AATTTTTGATT
1 ATTTACTA-TTAAATTATCAATG
** * *
26393081 ATTTACTACAAAATTATAAACG
1 ATTTACTATTAAATTATCAATG
* * *
26393103 ATTTA-TCACTAAATTGTCTATG
1 ATTTACT-ATTAAATTATCAATG
* * * *
26393125 ATTCACTACTAAATTATTAAAG
1 ATTTACTATTAAATTATCAATG
26393147 ATTTA-TATTAAATTATGC-ATG
1 ATTTACTATTAAATTAT-CAATG
* * * *
26393168 ATTTATTATTAAGTTATCACTA
1 ATTTACTATTAAATTATCAATG
* * *
26393190 ATTAACTATTATATTATCGATG
1 ATTTACTATTAAATTATCAATG
* ** *
26393212 ATTTACTACTT-AATTTTTGATT
1 ATTTACTA-TTAAATTATCAATG
** * *
26393234 ATTTACTACAAAATTATAAACG
1 ATTTACTATTAAATTATCAATG
* * *
26393256 ATTTA-TCACTAAATTGTCTATG
1 ATTTACT-ATTAAATTATCAATG
* *
26393278 ATTCACTACTAAATTATGC-ATG
1 ATTTACTATTAAATTAT-CAATG
* * * *
26393300 ATTTATTATTAAGTTATCACTA
1 ATTTACTATTAAATTATCAATG
* * **
26393322 ATTAACTATTATATTATTGATG
1 ATTTACTATTAAATTATCAATG
* * * * *
26393344 ATTTATTACTAAGTTAT-ACTA
1 ATTTACTATTAAATTATCAATG
* * * *
26393365 ATTTACTTTTAATTTTTCAATA
1 ATTTACTATTAAATTATCAATG
* * * *
26393387 ATTAACTACTAAACTATCAATT
1 ATTTACTATTAAATTATCAATG
* * * *
26393409 ATTTACTACTAATTTGTCATTG
1 ATTTACTATTAAATTATCAATG
*
26393431 ATTTATTATT
1 ATTTACTATT
26393441 GTCAATAAAT
Statistics
Matches: 298, Mismatches: 112, Indels: 36
0.67 0.25 0.08
Matches are distributed among these distances:
21 35 0.12
22 239 0.80
23 8 0.03
24 14 0.05
25 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.48
Consensus pattern (22 bp):
ATTTACTATTAAATTATCAATG
Found at i:26393206 original size:44 final size:44
Alignment explanation
Indices: 26393152--26393376 Score: 172
Period size: 44 Copynumber: 5.1 Consensus size: 44
26393142 TAAAGATTTA
26393152 TATTAAATTATGCATGATTTATTATTAAGTTATCACTAATTAAC
1 TATTAAATTATGCATGATTTATTATTAAGTTATCACTAATTAAC
* * * * * * *
26393196 TATTATATTAT-CGATGATTTACTACTTAATTTTTGA-TTATTTAC
1 TATTAAATTATGC-ATGATTTATTA-TTAAGTTATCACTAATTAAC
** ** * * * * * * *
26393240 TACAAAATTATAAACGATTTATCACTAAATTGTCTA-TGATTCAC
1 TATTAAATTATGCATGATTTATTATTAAGTTATC-ACTAATTAAC
*
26393284 TACTAAATTATGCATGATTTATTATTAAGTTATCACTAATTAAC
1 TATTAAATTATGCATGATTTATTATTAAGTTATCACTAATTAAC
* * *
26393328 TATTATATTATTG-ATGATTTATTACTAAGTTAT-ACTAATTTAC
1 TATTAAATTA-TGCATGATTTATTATTAAGTTATCACTAATTAAC
*
26393371 TTTTAA
1 TATTAA
26393377 TTTTTCAATA
Statistics
Matches: 139, Mismatches: 36, Indels: 13
0.74 0.19 0.07
Matches are distributed among these distances:
43 21 0.15
44 108 0.78
45 10 0.07
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (44 bp):
TATTAAATTATGCATGATTTATTATTAAGTTATCACTAATTAAC
Found at i:26393508 original size:11 final size:11
Alignment explanation
Indices: 26393470--26393528 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
26393460 AGTAAAAGTG
*
26393470 AGTTACTATTA
1 AGTTATTATTA
*
26393481 A-TT-TTACTA
1 AGTTATTATTA
*
26393490 ATTTATTATTA
1 AGTTATTATTA
26393501 AGTTATTATTA
1 AGTTATTATTA
*
26393512 ATTTATTATTA
1 AGTTATTATTA
*
26393523 AATTAT
1 AGTTAT
26393529 CAATAATTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
9 5 0.12
10 4 0.10
11 31 0.77
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.56
Consensus pattern (11 bp):
AGTTATTATTA
Found at i:26393515 original size:22 final size:22
Alignment explanation
Indices: 26393488--26393582 Score: 100
Period size: 22 Copynumber: 4.3 Consensus size: 22
26393478 TTAATTTTAC
*
26393488 TAATTTATTATTAAGTTATTAT
1 TAATTTATTATTAAGTTATCAT
* *
26393510 TAATTTATTATTAAATTATCAA
1 TAATTTATTATTAAGTTATCAT
* * *
26393532 TAATTAACTACTAAGTTATCAT
1 TAATTTATTATTAAGTTATCAT
* * *
26393554 TTATTTTTTATTAAGTTATCTT
1 TAATTTATTATTAAGTTATCAT
*
26393576 TGATTTA
1 TAATTTA
26393583 GTACTATGTT
Statistics
Matches: 57, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 57 1.00
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (22 bp):
TAATTTATTATTAAGTTATCAT
Found at i:26397411 original size:12 final size:13
Alignment explanation
Indices: 26397396--26397424 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26397386 TTAAATTAAA
26397396 ATTTA-TAAAAAT
1 ATTTACTAAAAAT
26397408 ATTTACTAAAAAT
1 ATTTACTAAAAAT
26397421 ATTT
1 ATTT
26397425 TAGCCAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (13 bp):
ATTTACTAAAAAT
Found at i:26397951 original size:2 final size:2
Alignment explanation
Indices: 26397939--26397988 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
26397929 ATGAATTCGT
*
26397939 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26397981 TA TA TA TA
1 TA TA TA TA
26397989 CACACTAAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:26400554 original size:23 final size:23
Alignment explanation
Indices: 26400519--26400562 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
26400509 TTGTAATTGA
*
26400519 TTTAAAATTAATA-AAATATTATT
1 TTTAAAATAAATATAAA-ATTATT
*
26400542 TTTAATATAAATATAAAATTA
1 TTTAAAATAAATATAAAATTA
26400563 AATAAATACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.83
24 3 0.17
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TTTAAAATAAATATAAAATTATT
Found at i:26400569 original size:16 final size:16
Alignment explanation
Indices: 26400543--26400601 Score: 84
Period size: 16 Copynumber: 3.7 Consensus size: 16
26400533 AATATTATTT
26400543 TTAATATAAATATAAAA
1 TTAA-ATAAATATAAAA
*
26400560 TTAAATAAATACAAAA
1 TTAAATAAATATAAAA
*
26400576 -TATATAAATATAAAA
1 TTAAATAAATATAAAA
26400591 TTAAATAAATA
1 TTAAATAAATA
26400602 ATAAGAATCT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
15 13 0.35
16 20 0.54
17 4 0.11
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (16 bp):
TTAAATAAATATAAAA
Found at i:26404403 original size:2 final size:2
Alignment explanation
Indices: 26404398--26404428 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26404388 TAGAAAAAAA
26404398 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
26404429 AAATAACAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:26412197 original size:21 final size:22
Alignment explanation
Indices: 26412167--26412218 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
26412157 GATATTTTAA
26412167 AATA-TTTATA-TTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
26412187 AATATTTTATATTTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
26412209 AATATTTTAT
1 AATATTTTAT
26412219 TAATTTCGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 20 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:26412731 original size:65 final size:65
Alignment explanation
Indices: 26412647--26412778 Score: 183
Period size: 65 Copynumber: 2.0 Consensus size: 65
26412637 TTGAACTTTT
* * * * * *
26412647 TCACTATTTTTTCAAGTCTTTTTTCTCTTTTTTCTCATCTTCAAGCTCGGACCTCAACTTAGCTA
1 TCACCATTTTTTCAAGTCTTCTTTCTCTTTTTCCTCATCCTCAAGCTCAGACCTCAACTTAACTA
* * *
26412712 TCACCATTTTTTTAGGTCTTCTTTCTCTTTTTCCTCATCCTCAAGCTCAGACTTCAACTTAACTA
1 TCACCATTTTTTCAAGTCTTCTTTCTCTTTTTCCTCATCCTCAAGCTCAGACCTCAACTTAACTA
26412777 TC
1 TC
26412779 TCAGCCTGAG
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.19, C:0.28, G:0.07, T:0.46
Consensus pattern (65 bp):
TCACCATTTTTTCAAGTCTTCTTTCTCTTTTTCCTCATCCTCAAGCTCAGACCTCAACTTAACTA
Found at i:26414457 original size:15 final size:15
Alignment explanation
Indices: 26414425--26414467 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
26414415 TTTTCTCTTA
* *
26414425 TTTCTCTTCAAAACC
1 TTTCTCATCAGAACC
*
26414440 TTTCTCATCAGAATC
1 TTTCTCATCAGAACC
*
26414455 TTTATCATCAGAA
1 TTTCTCATCAGAA
26414468 GACTCTAACT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.05, T:0.40
Consensus pattern (15 bp):
TTTCTCATCAGAACC
Found at i:26416979 original size:12 final size:12
Alignment explanation
Indices: 26416962--26416987 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26416952 ATTTATCAAT
26416962 TTAAATTTTTTA
1 TTAAATTTTTTA
26416974 TTAAATTTTTTA
1 TTAAATTTTTTA
26416986 TT
1 TT
26416988 TACTTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTAAATTTTTTA
Found at i:26417343 original size:23 final size:23
Alignment explanation
Indices: 26417292--26417344 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
26417282 TTTTTGAACA
26417292 ATATTTTTTTATCATTTTGTTTT
1 ATATTTTTTTATCATTTTGTTTT
*
26417315 AAATTTTATTT-TCATTTT-TTTT
1 ATATTTT-TTTATCATTTTGTTTT
26417337 ACTATTTT
1 A-TATTTT
26417345 CGAAGTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 5 0.19
23 18 0.69
24 3 0.12
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.72
Consensus pattern (23 bp):
ATATTTTTTTATCATTTTGTTTT
Found at i:26431049 original size:51 final size:53
Alignment explanation
Indices: 26430959--26431184 Score: 141
Period size: 51 Copynumber: 4.3 Consensus size: 53
26430949 TTGAGATCTC
* * * * *
26430959 ACATTCTTCCAATGTGGGATTGGGGTCTCAACTTATATAT-TTC-TTATCCAT
1 ACATTTTTCTAATGTGGAATTAGGATCTCAACTTATATATATTCATTATCCAT
* * *
26431010 ATATTTTTCTAATGTGGAATTAGGATCTCAACTTCTATATCATTCATTATTCAT
1 ACATTTTTCTAATGTGGAATTAGGATCTCAACTTATATAT-ATTCATTATCCAT
* * * * * * * *
26431064 ACATTTTTCTAATATATGATTTGTGGGAT-TGAAGGCGT-TACA-A-TC-TTAGTCCAC
1 ACATTTTTCTAATGT-GGA-AT-TAGGATCTCAA--CTTATATATATTCATTA-TCCAT
*
26431118 ACATTCTTTC-AATGTGGAATTAGGATCTCAACTTATATAT-TT-TTTATCCAT
1 ACATT-TTTCTAATGTGGAATTAGGATCTCAACTTATATATATTCATTATCCAT
26431169 ACATTCTTTC-AATGTG
1 ACATT-TTTCTAATGTG
26431185 AGATTGGGAT
Statistics
Matches: 134, Mismatches: 26, Indels: 30
0.71 0.14 0.16
Matches are distributed among these distances:
50 2 0.01
51 61 0.46
52 8 0.06
53 8 0.06
54 34 0.25
55 7 0.05
56 4 0.03
57 8 0.06
58 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.43
Consensus pattern (53 bp):
ACATTTTTCTAATGTGGAATTAGGATCTCAACTTATATATATTCATTATCCAT
Found at i:26432488 original size:122 final size:122
Alignment explanation
Indices: 26432267--26432510 Score: 461
Period size: 122 Copynumber: 2.0 Consensus size: 122
26432257 AACACAGAAC
*
26432267 CAAGATCACATCGGACGTAGGGATTCTACAGTCCAACTATATGACCAAAAGTTTACGATTAAGTT
1 CAAGATCACATCGGACGTAGGGATTCTACAGTCCAACTATATGACCAAAAGTTTACGATTAAATT
*
26432332 TAAATTAAGTCTCAACTTATATATCATTCTTTATCTATACATTTTTCTAATATAAGA
66 TAAATTAAGTCTCAACTTATATATCATTCCTTATCTATACATTTTTCTAATATAAGA
26432389 CAAGATCACATCGGACGTAGGGATTCTACAGTCCAACTATATGACCAAAAGTTTACGATTAAATT
1 CAAGATCACATCGGACGTAGGGATTCTACAGTCCAACTATATGACCAAAAGTTTACGATTAAATT
*
26432454 TAGATTAAGTCTCAACTTATATATCATTCCTTATCTATACATTTTTCTAATATAAGA
66 TAAATTAAGTCTCAACTTATATATCATTCCTTATCTATACATTTTTCTAATATAAGA
26432511 TTGAGGACCA
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (122 bp):
CAAGATCACATCGGACGTAGGGATTCTACAGTCCAACTATATGACCAAAAGTTTACGATTAAATT
TAAATTAAGTCTCAACTTATATATCATTCCTTATCTATACATTTTTCTAATATAAGA
Found at i:26432614 original size:126 final size:125
Alignment explanation
Indices: 26432267--26432638 Score: 398
Period size: 122 Copynumber: 3.0 Consensus size: 125
26432257 AACACAGAAC
* ** * * * *
26432267 CAAGATCACATCGGACGTAGGGATTCTACAGTCCAACTATATGACCAAAAGTTTACGATTAAGTT
1 CAAGACCACATCCAACGTAGGGATTCTACAGTCCAACTACAGGACCAAAAGATGACGATTAAGTT
26432332 TA-AATTAAGTCTCAACTTATATATCATTCTTTATCTATACATTTTTCTAATATAAGA--
66 TAGAATTAAGTCTCAACTTATATATCATTCTTTATCTATACATTTTTCTAATATAAGATT
* ** * * * * *
26432389 CAAGATCACATCGGACGTAGGGATTCTACAGTCCAACTATATGACCAAAAGTTTACGATTAAATT
1 CAAGACCACATCCAACGTAGGGATTCTACAGTCCAACTACAGGACCAAAAGATGACGATTAAGTT
*
26432454 TAG-ATTAAGTCTCAACTTATATATCATTCCTTATCTATACATTTTTCTAATATAAGATT
66 TAGAATTAAGTCTCAACTTATATATCATTCTTTATCTATACATTTTTCTAATATAAGATT
* * * * * * * * *
26432513 GAGGACCAATATCACAATGTTGGGATTTTAGAGTCTAACTACAGGATCAAAAGCATGA-GATTAA
1 CAAGACC-ACATC-CAACGTAGGGATTCTACAGTCCAACTACAGGACCAAAAG-ATGACGATTAA
* * * *
26432577 GTTTAGAATTAAGTCTTAACTTATATATCATT-TTTATCCATATATTCTTTC-AATGTAAGATT
63 GTTTAGAATTAAGTCTCAACTTATATATCATTCTTTATCTATACATT-TTTCTAATATAAGATT
26432639 AAAAGTATTA
Statistics
Matches: 218, Mismatches: 24, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
122 119 0.55
124 4 0.02
125 4 0.02
126 61 0.28
127 30 0.14
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.36
Consensus pattern (125 bp):
CAAGACCACATCCAACGTAGGGATTCTACAGTCCAACTACAGGACCAAAAGATGACGATTAAGTT
TAGAATTAAGTCTCAACTTATATATCATTCTTTATCTATACATTTTTCTAATATAAGATT
Found at i:26436194 original size:3 final size:3
Alignment explanation
Indices: 26436181--26436214 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
26436171 TATTTATGCA
*
26436181 GAG GTAG GAG GAG GAG GGG GAG GAG GAG GAG GAG
1 GAG G-AG GAG GAG GAG GAG GAG GAG GAG GAG GAG
26436215 AATTGGAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.29, C:0.00, G:0.68, T:0.03
Consensus pattern (3 bp):
GAG
Found at i:26441468 original size:32 final size:32
Alignment explanation
Indices: 26441416--26441480 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
26441406 TGGCAGGAAG
26441416 ATAGACTACACATTTCACAAGGAAAGCCTCTA
1 ATAGACTACACATTTCACAAGGAAAGCCTCTA
* * *
26441448 ATAGACTGCACCTTTTACAAGGAAAGCCTCTA
1 ATAGACTACACATTTCACAAGGAAAGCCTCTA
26441480 A
1 A
26441481 AATAACCCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.38, C:0.25, G:0.14, T:0.23
Consensus pattern (32 bp):
ATAGACTACACATTTCACAAGGAAAGCCTCTA
Found at i:26447861 original size:18 final size:19
Alignment explanation
Indices: 26447835--26447880 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
26447825 TATGCATGAA
* *
26447835 TGAGTGAGAAGTGA-AAAG
1 TGAGAGAGAAGAGAGAAAG
*
26447853 TGAGAGAG-AGAGAGAGAG
1 TGAGAGAGAAGAGAGAAAG
26447871 TGAGAGAGAA
1 TGAGAGAGAA
26447881 ATTGAAGTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 4 0.17
18 18 0.78
19 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.43, T:0.11
Consensus pattern (19 bp):
TGAGAGAGAAGAGAGAAAG
Found at i:26449044 original size:2 final size:2
Alignment explanation
Indices: 26449039--26449071 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26449029 CCCCCCCCCA
26449039 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
26449072 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:26450403 original size:22 final size:20
Alignment explanation
Indices: 26450361--26450421 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 20
26450351 AAGTGAGATA
26450361 AATTTAA-ATATTTTAATATTT
1 AATTTAATA-ATTTTAA-ATTT
26450382 AATTTGAATAATTTATAAATTT
1 AATTT-AATAATTT-TAAATTT
26450404 AA-TTAA-AATTTTAAATTT
1 AATTTAATAATTTTAAATTT
26450422 TATATATTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
18 7 0.19
19 5 0.14
20 2 0.05
21 7 0.19
22 12 0.32
23 4 0.11
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
AATTTAATAATTTTAAATTT
Found at i:26450663 original size:19 final size:20
Alignment explanation
Indices: 26450634--26450673 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
26450624 AATTATAATT
26450634 TAATCAAATTTAAATTTAAA
1 TAATCAAATTTAAATTTAAA
**
26450654 TAAT-AAATTTTGATTTAAA
1 TAATCAAATTTAAATTTAAA
26450673 T
1 T
26450674 TTAAACTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (20 bp):
TAATCAAATTTAAATTTAAA
Found at i:26451615 original size:21 final size:22
Alignment explanation
Indices: 26451591--26451635 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
26451581 AATACAAAAT
* *
26451591 ATTTATTTTTAATT-TTATTAA
1 ATTTATATATAATTATTATTAA
26451612 ATTTATATATAATTATTATTAA
1 ATTTATATATAATTATTATTAA
26451634 AT
1 AT
26451636 CTTTAAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
ATTTATATATAATTATTATTAA
Found at i:26459547 original size:11 final size:11
Alignment explanation
Indices: 26459533--26459571 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
26459523 TTTATAAATT
26459533 ATTTAAATTTA
1 ATTTAAATTTA
**
26459544 ATTTAAATAAA
1 ATTTAAATTTA
*
26459555 ATTTAAATTTG
1 ATTTAAATTTA
26459566 ATTTAA
1 ATTTAA
26459572 TTATTATCAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (11 bp):
ATTTAAATTTA
Found at i:26459548 original size:22 final size:20
Alignment explanation
Indices: 26459522--26459570 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
26459512 ATACATTAAT
26459522 ATTTATAAATTATTTAAATTTA
1 ATTTATAAA--ATTTAAATTTA
*
26459544 ATTTAAATAAAATTTAAATTTG
1 ATTT--ATAAAATTTAAATTTA
26459566 ATTTA
1 ATTTA
26459571 ATTATTATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 18 0.75
24 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
ATTTATAAAATTTAAATTTA
Found at i:26459645 original size:34 final size:35
Alignment explanation
Indices: 26459573--26459645 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 35
26459563 TTGATTTAAT
*
26459573 TATT-ATCAAATTAAATATAAATTTGAGTAGTTTA
1 TATTCATCAAATTAAATATAAATTCGAGTAGTTTA
* *
26459607 -ATTCATC-AATTAAAT-TAAGTTCGAGTATTTTTA
1 TATTCATCAAATTAAATATAAATTCGAGTA-GTTTA
26459640 TATTCA
1 TATTCA
26459646 ATTTGAGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
32 10 0.30
33 15 0.45
34 8 0.24
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.45
Consensus pattern (35 bp):
TATTCATCAAATTAAATATAAATTCGAGTAGTTTA
Found at i:26460705 original size:2 final size:2
Alignment explanation
Indices: 26460698--26460729 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
26460688 CAATATGGAA
26460698 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26460730 ATCTCCACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26468537 original size:18 final size:19
Alignment explanation
Indices: 26468514--26468549 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
26468504 CGATCTGCAA
26468514 AAACTTGTCAATA-CTCAC
1 AAACTTGTCAATATCTCAC
26468532 AAACTTGTCAATATCTCA
1 AAACTTGTCAATATCTCA
26468550 TCACAAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.31
Consensus pattern (19 bp):
AAACTTGTCAATATCTCAC
Found at i:26483969 original size:18 final size:18
Alignment explanation
Indices: 26483946--26483981 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
26483936 CTTGGGAGTG
26483946 AAAAAATTTATTTAAAAT
1 AAAAAATTTATTTAAAAT
26483964 AAAAAATTTATTTAAAAT
1 AAAAAATTTATTTAAAAT
26483982 TTTAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAAAATTTATTTAAAAT
Found at i:26484138 original size:18 final size:19
Alignment explanation
Indices: 26484102--26484144 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
26484092 TCAAAATAAA
26484102 TTATATATTTTTATTAATTT
1 TTATATATTTTTA-TAATTT
26484122 TTATATATTTTTA-AATTT
1 TTATATATTTTTATAATTT
26484140 TTATA
1 TTATA
26484145 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.43
20 13 0.57
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATATATTTTTATAATTT
Found at i:26484141 original size:8 final size:9
Alignment explanation
Indices: 26484102--26484145 Score: 54
Period size: 10 Copynumber: 4.7 Consensus size: 9
26484092 TCAAAATAAA
26484102 TTATATATTT
1 TTATA-ATTT
26484112 TTATTAATTT
1 TTA-TAATTT
26484122 TTATATATTT
1 TTATA-ATTT
26484132 TTA-AATTT
1 TTATAATTT
26484140 TTATAA
1 TTATAA
26484146 AATAAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 7 0.23
9 5 0.16
10 17 0.55
11 2 0.06
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
TTATAATTT
Found at i:26484201 original size:22 final size:24
Alignment explanation
Indices: 26484173--26484216 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
26484163 TATATATAAA
26484173 TTTATTTAAAT-ATAT-TAAAATT
1 TTTATTTAAATAATATATAAAATT
26484195 TTTATTTAAATAATATATAAAA
1 TTTATTTAAATAATATATAAAA
26484217 ATTTAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 11 0.55
23 4 0.20
24 5 0.25
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
TTTATTTAAATAATATATAAAATT
Found at i:26485020 original size:2 final size:2
Alignment explanation
Indices: 26485008--26485046 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
26484998 CTGGATTTGT
*
26485008 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26485047 TGCTGGCGGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:26490195 original size:29 final size:29
Alignment explanation
Indices: 26490158--26490216 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
26490148 AATTAACAAA
* * *
26490158 TTTATAATTTAAGTATTATATTAAATATT
1 TTTAAAATTCAAGTATTATAATAAATATT
26490187 TTTAAAATTCAAGTATTATAATAAATATT
1 TTTAAAATTCAAGTATTATAATAAATATT
26490216 T
1 T
26490217 CACTATAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (29 bp):
TTTAAAATTCAAGTATTATAATAAATATT
Found at i:26492826 original size:21 final size:21
Alignment explanation
Indices: 26492802--26492841 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26492792 TATATATTAT
*
26492802 AATAGATCTTTAAAATATCTC
1 AATAGATCATTAAAATATCTC
* *
26492823 AATATATGATTAAAATATC
1 AATAGATCATTAAAATATC
26492842 ATAAATTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (21 bp):
AATAGATCATTAAAATATCTC
Found at i:26495399 original size:2 final size:2
Alignment explanation
Indices: 26495394--26495425 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
26495384 GTTAATCTCT
*
26495394 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26495426 GACTTTGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:26495704 original size:30 final size:30
Alignment explanation
Indices: 26495668--26495732 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
26495658 ATACATTATC
*
26495668 AATTAAATAATAA-AATTTATTAATAAAATA
1 AATTAAATAATAACAATTCATTAAT-AAATA
* * *
26495698 AATTAAATTATAACACTTCATTAATGAATA
1 AATTAAATAATAACAATTCATTAATAAATA
26495728 AATTA
1 AATTA
26495733 TTTTAATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 21 0.70
31 9 0.30
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (30 bp):
AATTAAATAATAACAATTCATTAATAAATA
Found at i:26495771 original size:20 final size:22
Alignment explanation
Indices: 26495746--26495833 Score: 65
Period size: 24 Copynumber: 3.8 Consensus size: 22
26495736 TAATTTATGT
26495746 ATATTTAATT-TTAA-AAATTA
1 ATATTTAATTATTAATAAATTA
*
26495766 ATATTTACTTATTAATAAATTA
1 ATATTTAATTATTAATAAATTA
*
26495788 TTATCATATAATTTATTAATAATATATA
1 --AT-ATTTAA-TTATTAATAA-AT-TA
*
26495816 A-ATTTTATATATTAATAA
1 ATATTTAAT-TATTAATAA
26495834 TATATTAAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
20 9 0.17
21 4 0.07
22 6 0.11
23 1 0.02
24 15 0.28
25 4 0.07
26 11 0.20
27 2 0.04
28 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
ATATTTAATTATTAATAAATTA
Found at i:26495854 original size:24 final size:23
Alignment explanation
Indices: 26495793--26495855 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 23
26495783 AATTATTATC
*
26495793 ATATAATTTATTAATAATATATAA
1 ATATAAATT-TTAATAATATATAA
* * *
26495817 ATTTTATATATTAATAATATATTAA
1 A-TATAAATTTTAATAATATA-TAA
26495842 ATATAAATTTTAAT
1 ATATAAATTTTAAT
26495856 TTTAATTATA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
24 22 0.73
25 8 0.27
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
ATATAAATTTTAATAATATATAA
Found at i:26496479 original size:38 final size:38
Alignment explanation
Indices: 26496436--26496514 Score: 90
Period size: 38 Copynumber: 2.1 Consensus size: 38
26496426 GTTCGAATAA
*
26496436 AATTTGAATTTAATTTGA-TTATT-ATCAAGTCGAATTTG
1 AATTTG-A-TTAATATGACTTATTGATCAAGTCGAATTTG
* * *
26496474 AATTTGATTAATATGACTTATTGATCTAGTTGAGTTTG
1 AATTTGATTAATATGACTTATTGATCAAGTCGAATTTG
26496512 AAT
1 AAT
26496515 ATTTTTATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
36 8 0.23
37 6 0.17
38 21 0.60
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.47
Consensus pattern (38 bp):
AATTTGATTAATATGACTTATTGATCAAGTCGAATTTG
Found at i:26497835 original size:13 final size:13
Alignment explanation
Indices: 26497801--26497868 Score: 54
Period size: 13 Copynumber: 5.5 Consensus size: 13
26497791 TAAATCATAT
*
26497801 TATTAT-TTTATTT
1 TATTATATTT-TTA
*
26497814 TATTTTATTTTTA
1 TATTATATTTTTA
*
26497827 TATCATA--TTTA
1 TATTATATTTTTA
**
26497838 TATTATATCATTA
1 TATTATATTTTTA
26497851 TATTATATTTTTA
1 TATTATATTTTTA
26497864 -ATTAT
1 TATTAT
26497869 TAGATCTATA
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
11 10 0.23
12 5 0.11
13 26 0.59
14 3 0.07
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (13 bp):
TATTATATTTTTA
Found at i:26497837 original size:11 final size:11
Alignment explanation
Indices: 26497803--26497860 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
26497793 AATCATATTA
*
26497803 TTATTTTAT-T
1 TTATATTATAT
* *
26497813 TTATTTTATTT
1 TTATATTATAT
*
26497824 TTATATCATAT
1 TTATATTATAT
26497835 TTATATTATAT
1 TTATATTATAT
26497846 CATTATATTATAT
1 --TTATATTATAT
26497859 TT
1 TT
26497861 TTAATTATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
10 9 0.22
11 21 0.51
13 11 0.27
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATATTATAT
Found at i:26498675 original size:16 final size:15
Alignment explanation
Indices: 26498647--26498685 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
26498637 TACCATAATT
26498647 AAAT-ATAATTATAA
1 AAATAATAATTATAA
26498661 AAATAATAATATATAA
1 AAATAATAAT-TATAA
*
26498677 AATTAATAA
1 AAATAATAA
26498686 AAAAATGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.18
15 5 0.23
16 13 0.59
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATAATAATTATAA
Found at i:26499634 original size:29 final size:29
Alignment explanation
Indices: 26499577--26499650 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
26499567 TTTAAACACA
* *
26499577 ACATGCATAAATACAAATAACATAAATAT
1 ACATGAATAGATACAAATAACATAAATAT
* * **
26499606 ATATGAATAGATACAACTAACATGGATAT
1 ACATGAATAGATACAAATAACATAAATAT
*
26499635 ACATGAATAGACACAA
1 ACATGAATAGATACAA
26499651 TTAATACGAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.54, C:0.14, G:0.09, T:0.23
Consensus pattern (29 bp):
ACATGAATAGATACAAATAACATAAATAT
Found at i:26499663 original size:29 final size:29
Alignment explanation
Indices: 26499601--26499663 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
26499591 AAATAACATA
* * *
26499601 AATATATATGAATAGATACAACTAACATG
1 AATATACATGAATAGACACAACTAACACG
* * *
26499630 GATATACATGAATAGACACAATTAATACG
1 AATATACATGAATAGACACAACTAACACG
26499659 AATAT
1 AATAT
26499664 TTACAAAAAC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.27
Consensus pattern (29 bp):
AATATACATGAATAGACACAACTAACACG
Found at i:26501989 original size:2 final size:2
Alignment explanation
Indices: 26501982--26502014 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26501972 CCATAAATTT
26501982 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26502015 TACAAGTAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26507752 original size:23 final size:21
Alignment explanation
Indices: 26507713--26507756 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
26507703 GTTCTTTTGC
*
26507713 TTTTAAAAAATAATTAATAAT
1 TTTTAAAAAAAAATTAATAAT
26507734 TTTTACAAAAAAAAGTTAATAAT
1 TTTTA-AAAAAAAA-TTAATAAT
26507757 AATATTAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 7 0.35
23 8 0.40
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
TTTTAAAAAAAAATTAATAAT
Found at i:26517548 original size:20 final size:20
Alignment explanation
Indices: 26517502--26517548 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
26517492 ATATAAAATT
26517502 AATA-AAAATTAAAAAATAA
1 AATATAAAATTAAAAAATAA
* *
26517521 TATTTAAAATTAAAAAA-AA
1 AATATAAAATTAAAAAATAA
26517540 AACTATAAA
1 AA-TATAAA
26517549 TGAATTTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (20 bp):
AATATAAAATTAAAAAATAA
Found at i:26517640 original size:18 final size:18
Alignment explanation
Indices: 26517602--26517642 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26517592 AATTACAAAT
* **
26517602 TATAAAATATAATTTTTA
1 TATAAAATATAATATAAA
26517620 TATAAAATATAATATAAA
1 TATAAAATATAATATAAA
26517638 TATAA
1 TATAA
26517643 TTTTTTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TATAAAATATAATATAAA
Found at i:26519835 original size:2 final size:2
Alignment explanation
Indices: 26519828--26519863 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
26519818 TACCTCTTTT
26519828 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26519864 TCTAAAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:26520806 original size:23 final size:24
Alignment explanation
Indices: 26520770--26520824 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
26520760 TTAGATCAAA
* *
26520770 TAAAATATGTTGTATCCGA-AAATT
1 TAAAA-ATCTTGTATCCAATAAATT
26520794 TAAAAATCTTGTATCCAATAAATT
1 TAAAAATCTTGTATCCAATAAATT
*
26520818 AAAAAAT
1 TAAAAAT
26520825 AGTATTTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 11 0.41
24 16 0.59
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (24 bp):
TAAAAATCTTGTATCCAATAAATT
Found at i:26526220 original size:10 final size:9
Alignment explanation
Indices: 26526196--26526237 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
26526186 TATTTTTATT
26526196 TTATAAAAA
1 TTATAAAAA
26526205 TT-TAAAAA
1 TTATAAAAA
26526213 TATATAAAAA
1 T-TATAAAAA
* *
26526223 CTAAAAAAA
1 TTATAAAAA
26526232 TTATAA
1 TTATAA
26526238 TTCAATTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
8 7 0.26
9 14 0.52
10 6 0.22
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (9 bp):
TTATAAAAA
Found at i:26532476 original size:17 final size:17
Alignment explanation
Indices: 26532451--26532488 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
26532441 TATGCAGAGG
*
26532451 AAAATGAAAAAAAAAAC
1 AAAAGGAAAAAAAAAAC
*
26532468 AAAAGGAAAAAAAAAAG
1 AAAAGGAAAAAAAAAAC
26532485 AAAA
1 AAAA
26532489 AAAGACAGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.84, C:0.03, G:0.11, T:0.03
Consensus pattern (17 bp):
AAAAGGAAAAAAAAAAC
Found at i:26540191 original size:50 final size:50
Alignment explanation
Indices: 26540132--26540231 Score: 123
Period size: 50 Copynumber: 2.0 Consensus size: 50
26540122 ACATCCTTGT
*
26540132 CAAGCCTAACATAAAG-CACACAAATCCACCAA-ATCACACCAAACGTTGAA
1 CAAGCCTAACACAAAGACACACAAAT-CA-CAAGATCACACCAAACGTTGAA
* * *
26540182 CAAGCCTAACACAAAGTATACACAGATCACAAGATCACACCAGACGTTGA
1 CAAGCCTAACACAAAG-ACACACAAATCACAAGATCACACCAAACGTTGA
26540232 GATTCTAAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
50 18 0.42
51 18 0.42
52 7 0.16
ACGTcount: A:0.46, C:0.30, G:0.11, T:0.13
Consensus pattern (50 bp):
CAAGCCTAACACAAAGACACACAAATCACAAGATCACACCAAACGTTGAA
Found at i:26541821 original size:44 final size:44
Alignment explanation
Indices: 26541772--26541860 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
26541762 TCTGCTAGAA
*
26541772 ACTTAGAATTGTTCTATATAATGTCTCTCTTATCCATAGAATAT
1 ACTTAGAATTGTTCTATATAATATCTCTCTTATCCATAGAATAT
* *
26541816 ACTTAGAATTGTTCTGTATAATATCTCTCTTATCTATAGAATAT
1 ACTTAGAATTGTTCTATATAATATCTCTCTTATCCATAGAATAT
26541860 A
1 A
26541861 GACATTTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.44
Consensus pattern (44 bp):
ACTTAGAATTGTTCTATATAATATCTCTCTTATCCATAGAATAT
Found at i:26545958 original size:65 final size:62
Alignment explanation
Indices: 26545781--26545961 Score: 166
Period size: 64 Copynumber: 2.8 Consensus size: 62
26545771 TTGGCTTACA
* * * **
26545781 ATTGAATGAGATTATTAAATGTGTTTTTGACAAAAAACGCATTCAATAATCCATTTAAAAAATTT
1 ATTGAA-GAGATTATTGAAGGT-TTTTTGACAAAAAACGC-TTCAATAATCTATACAAAAAATTT
* * * * *
26545846 -TGGAGAGAGAATATTGAAGGTGTTTTGATCCAAAAATGCCTTCAATAATCTATACAAAAAATTT
1 ATTGA-AGAGATTATTGAAGGTTTTTTGA-CAAAAAACG-CTTCAATAATCTATACAAAAAA-TT
26545910 T
62 T
* *
26545911 ATTGAAGGGATTATTGAAGGTATTTTTGACAAAAAACGACTTAAATAATCT
1 ATTGAAGAGATTATTGAAGGT-TTTTTGACAAAAAACG-CTTCAATAATCT
26545962 TCACAACAAC
Statistics
Matches: 92, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
63 6 0.07
64 40 0.43
65 37 0.40
66 9 0.10
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.34
Consensus pattern (62 bp):
ATTGAAGAGATTATTGAAGGTTTTTTGACAAAAAACGCTTCAATAATCTATACAAAAAATTT
Found at i:26546278 original size:62 final size:59
Alignment explanation
Indices: 26546099--26546279 Score: 191
Period size: 64 Copynumber: 2.9 Consensus size: 59
26546089 AGGCGGTTTT
*
26546099 ATAATCCCCTGAAAAAATTTTGAAAATGATTATTGAAGGCATTTTTGACAAAAAAGGCCTTCA
1 ATAAT-CCCT-AAAAAATTTTGAAAA-GATTATTGAAGGCGTTTTTGAC-AAAAAGGCCTTCA
*** * *
26546162 ATAATCCCTTATAAAAATTTATTGAGGGGATTATTGAAGGCGTTTTTAGCCAAAAATGCCTTCA
1 ATAATCCC-TA-AAAAA-TT-TTGAAAAGATTATTGAAGGCGTTTTT-GACAAAAAGGCCTTCA
*
26546226 ATAATCCTCTAAAAAATTTTGAAAAGAATTATTGAAGGTGTTTTTGATCAAAAA
1 ATAATCC-CTAAAAAATTTTGAAAAG-ATTATTGAAGGCGTTTTTGA-CAAAAA
26546280 CATTTTTAAT
Statistics
Matches: 99, Mismatches: 11, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
61 6 0.06
62 29 0.29
63 16 0.16
64 41 0.41
65 7 0.07
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (59 bp):
ATAATCCCTAAAAAATTTTGAAAAGATTATTGAAGGCGTTTTTGACAAAAAGGCCTTCA
Found at i:26546438 original size:24 final size:26
Alignment explanation
Indices: 26546385--26546439 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
26546375 TGTTTTTGGT
*
26546385 TAAAAACACCTTCAATAACCTCTTGA
1 TAAAAACACCTTCAATAACCTCTTCA
*
26546411 -AAAAA-ACTTTCAATAACC-CTTCA
1 TAAAAACACCTTCAATAACCTCTTCA
26546434 TAAAAA
1 TAAAAA
26546440 TTTATTTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 4 0.15
24 17 0.65
25 5 0.19
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.25
Consensus pattern (26 bp):
TAAAAACACCTTCAATAACCTCTTCA
Done.