Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 147 of 147
Found at i:27737888 original size:117 final size:116
Alignment explanation
Indices: 27737682--27738117 Score: 613
Period size: 117 Copynumber: 3.8 Consensus size: 116
27737672 TTGTGCAGGA
27737682 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAACTTTGATTTTCAAGGAAAATT
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTGGAAACTTTGATTTTCAAGGAAAATT
27737747 GATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAATTTTATTTTAAAGG
65 GATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAATTTTATTTTAAAGG
* * *
27737799 AAAATTGATACTTTTAACTTTTCTCCAAAAATGTTTTTTGGAACCTTTGATTTTCAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTC-CCAAAAATATTTTTTGGAAACTTTGATTTTCAAGGAAAATT
* * * *
27737864 GATACTTTCAACTTTTCCTTAAAAACCCTTTTTTTTAAATTTTATTTTTAAGA
65 GATACTTTCAACTTTTCCTCAAAAA-CCTTTTTTTGAAATTTTATTTTAAAGG
*
27737917 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTTGGAAACTTTGATTTTAAAGGAAAA
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATA--TTTTTTGGAAACTTTGATTTTCAAGGAAAA
* *
27737982 TTGATACTTTCAACTTTTCC-CAAAAA--TATTTTTTGAAACTTTGATTTTCAAGG
63 TTGATACTTTCAACTTTTCCTCAAAAACCT-TTTTTTGAAA-TTTTATTTTAAAGG
*
27738035 AAAATTGATACTTTCAACTTTTCCTCAAAAA-ATTTTTT-GAAA-TTT-ATTTTTAAGG-AAATT
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTGGAAACTTTGATTTTCAAGGAAAATT
*
27738095 GATAC-TTCAACTTGTCC-CAAAAA
65 GATACTTTCAACTTTTCCTCAAAAA
27738118 ATATATATTT
Statistics
Matches: 293, Mismatches: 18, Indels: 23
0.88 0.05 0.07
Matches are distributed among these distances:
110 17 0.06
111 10 0.03
112 9 0.03
113 3 0.01
114 4 0.01
115 6 0.02
116 6 0.02
117 92 0.31
118 92 0.31
119 6 0.02
120 48 0.16
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (116 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGGAAACTTTGATTTTCAAGGAAAATTG
ATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAATTTTATTTTAAAGG
Found at i:27738174 original size:17 final size:16
Alignment explanation
Indices: 27738142--27738207 Score: 62
Period size: 17 Copynumber: 3.8 Consensus size: 16
27738132 ATTTTTATTT
27738142 TAAAGAAAATAGAAAATAA
1 TAAA-AAAATA-AAAA-AA
27738161 TAAAAAAATAAAAAAA
1 TAAAAAAATAAAAAAA
*
27738177 CAAAAGAAATAAAACAAA
1 TAAAA-AAATAAAA-AAA
27738195 -AATAAAAATAAAA
1 TAA-AAAAATAAAA
27738208 TAAAGATAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
16 6 0.14
17 22 0.51
18 11 0.26
19 4 0.09
ACGTcount: A:0.80, C:0.03, G:0.05, T:0.12
Consensus pattern (16 bp):
TAAAAAAATAAAAAAA
Found at i:27738216 original size:11 final size:11
Alignment explanation
Indices: 27738147--27738218 Score: 60
Period size: 11 Copynumber: 6.4 Consensus size: 11
27738137 TATTTTAAAG
27738147 AAAATAGAAAAT
1 AAAATA-AAAAT
27738159 AATAA-AAAAAT
1 AA-AATAAAAAT
*
27738170 AAAA-AAACAAA
1 AAAATAAA-AAT
27738181 AGAAATAAAACA-
1 A-AAATAAAA-AT
27738193 AAAATAAAAAT
1 AAAATAAAAAT
*
27738204 AAAATAAAGAT
1 AAAATAAAAAT
27738215 AAAA
1 AAAA
27738219 AGAATATTTA
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
10 6 0.12
11 32 0.62
12 8 0.15
13 6 0.12
ACGTcount: A:0.81, C:0.03, G:0.04, T:0.12
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:27738216 original size:17 final size:16
Alignment explanation
Indices: 27738164--27738219 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 16
27738154 AAAATAATAA
27738164 AAAAATAAAAAAACAA-
1 AAAAATAAAAAAA-AAT
27738180 AAGAAATAAAACAAAAAT
1 AA-AAATAAAA-AAAAAT
*
27738198 AAAAATAAAATAAAGAT
1 AAAAATAAAA-AAAAAT
27738215 AAAAA
1 AAAAA
27738220 GAATATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 2 0.06
17 28 0.80
18 5 0.14
ACGTcount: A:0.82, C:0.04, G:0.04, T:0.11
Consensus pattern (16 bp):
AAAAATAAAAAAAAAT
Found at i:27738252 original size:4 final size:4
Alignment explanation
Indices: 27738243--27738286 Score: 70
Period size: 4 Copynumber: 10.8 Consensus size: 4
27738233 AACCTAATCT
*
27738243 AATA AATA AATAA AATA AATA AACA AATA AATA AATA AATA AAT
1 AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA AAT
27738287 TCAAAAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 33 0.89
5 4 0.11
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:27738272 original size:12 final size:12
Alignment explanation
Indices: 27738243--27738299 Score: 62
Period size: 12 Copynumber: 4.6 Consensus size: 12
27738233 AACCTAATCT
27738243 AATAAATAAATAA
1 AATAAATAAA-AA
*
27738256 AATAAATAAACA
1 AATAAATAAAAA
*
27738268 AATAAATAAATA
1 AATAAATAAAAA
27738280 AATAAATTCAAAAA
1 AATAAA-T-AAAAA
27738294 AA-AAAT
1 AATAAAT
27738300 CTGGAGCGGC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
12 19 0.49
13 14 0.36
14 6 0.15
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (12 bp):
AATAAATAAAAA
Found at i:27738299 original size:29 final size:29
Alignment explanation
Indices: 27738243--27738299 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
27738233 AACCTAATCT
*
27738243 AATAAATAAATAAAATAAATAAACAAATA
1 AATAAATAAATAAAATAAATAAAAAAATA
*
27738272 AATAAATAAATAAATTCAAA-AAAAAAAT
1 AATAAATAAATAAAAT-AAATAAAAAAAT
27738300 CTGGAGCGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 22 0.88
30 3 0.12
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (29 bp):
AATAAATAAATAAAATAAATAAAAAAATA
Found at i:27739291 original size:24 final size:24
Alignment explanation
Indices: 27739264--27739330 Score: 73
Period size: 24 Copynumber: 2.7 Consensus size: 24
27739254 ATAAATACCC
27739264 AAGATAAAAAAATAATAATAA-AAA
1 AAGATAAAAAAATAA-AATAATAAA
*
27739288 AAGAGAAAAAATATAAAATAATAAA
1 AAGATAAAAAA-ATAAAATAATAAA
*
27739313 AATATAAATATAAATAAA
1 AAGATAAA-A-AAATAAA
27739331 TGAAAAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
24 15 0.42
25 13 0.36
26 6 0.17
27 2 0.06
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.19
Consensus pattern (24 bp):
AAGATAAAAAAATAAAATAATAAA
Found at i:27739331 original size:16 final size:16
Alignment explanation
Indices: 27739294--27739330 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
27739284 AAAAAAGAGA
27739294 AAAAATATAAAATAAT
1 AAAAATATAAAATAAT
27739310 AAAAATATAAATATAAAT
1 AAAAATATAAA-AT-AAT
27739328 AAA
1 AAA
27739331 TGAAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.58
17 2 0.11
18 6 0.32
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAAATATAAAATAAT
Found at i:27741587 original size:30 final size:29
Alignment explanation
Indices: 27741553--27741650 Score: 106
Period size: 30 Copynumber: 3.3 Consensus size: 29
27741543 CTACATCATC
*
27741553 ATTCAAAAAAATTCTAAATTTTTTTTAAAA
1 ATTCAAAAAAATTCTAAA-ATTTTTTAAAA
* *
27741583 ATTCAAAAAATTTCTAAAAATATTTTAAAA
1 ATTCAAAAAAATTCT-AAAATTTTTTAAAA
* * * *
27741613 ATTCTAAAATATTTTAAAATTTTTCAAAA
1 ATTCAAAAAAATTCTAAAATTTTTTAAAA
*
27741642 ATTCTAAAA
1 ATTCAAAAA
27741651 CTTCTTAAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
29 21 0.36
30 34 0.59
31 3 0.05
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (29 bp):
ATTCAAAAAAATTCTAAAATTTTTTAAAA
Found at i:27741601 original size:10 final size:10
Alignment explanation
Indices: 27741578--27741684 Score: 59
Period size: 10 Copynumber: 10.8 Consensus size: 10
27741568 AAATTTTTTT
27741578 TAAAAA-TTC
1 TAAAAATTTC
*
27741587 AAAAAATTTC
1 TAAAAATTTC
*
27741597 TAAAAATATTT
1 TAAAAAT-TTC
27741608 TAAAAA-TTC
1 TAAAAATTTC
27741617 TAAAATATTT-
1 TAAAA-ATTTC
*
27741627 T-AAAATTTT
1 TAAAAATTTC
27741636 TCAAAAA-TTC
1 T-AAAAATTTC
*
27741646 T-AAAACTTC
1 TAAAAATTTC
27741655 TTAAATAATTT-
1 -TAAA-AATTTC
27741666 TAAAAAATTT-
1 T-AAAAATTTC
27741676 TAGAAAATT
1 TA-AAAATT
27741685 CAAGAGAAAA
Statistics
Matches: 79, Mismatches: 6, Indels: 25
0.72 0.05 0.23
Matches are distributed among these distances:
8 8 0.10
9 20 0.25
10 28 0.35
11 19 0.24
12 4 0.05
ACGTcount: A:0.52, C:0.07, G:0.01, T:0.40
Consensus pattern (10 bp):
TAAAAATTTC
Found at i:27741602 original size:20 final size:20
Alignment explanation
Indices: 27741579--27741687 Score: 55
Period size: 19 Copynumber: 5.5 Consensus size: 20
27741569 AATTTTTTTT
27741579 AAAAATTCAAAAAATTTCTA
1 AAAAATTCAAAAAATTTCTA
**
27741599 AAAATATTTTAAAAA-TTCTA
1 AAAA-ATTCAAAAAATTTCTA
* ** * *
27741619 AAATATT-TTAAAATTTTTC
1 AAAAATTCAAAAAATTTCTA
* *
27741638 AAAAATTC-TAAAACTTCTTA
1 AAAAATTCAAAAAATTTC-TA
* *
27741658 AATAATTTTAAAAAATTT-TA
1 AA-AAATTCAAAAAATTTCTA
*
27741678 GAAAATTCAA
1 AAAAATTCAA
27741688 GAGAAAATTT
Statistics
Matches: 66, Mismatches: 17, Indels: 13
0.69 0.18 0.14
Matches are distributed among these distances:
18 5 0.08
19 25 0.38
20 18 0.27
21 12 0.18
22 6 0.09
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.39
Consensus pattern (20 bp):
AAAAATTCAAAAAATTTCTA
Found at i:27741632 original size:29 final size:29
Alignment explanation
Indices: 27741575--27741671 Score: 103
Period size: 29 Copynumber: 3.3 Consensus size: 29
27741565 TCTAAATTTT
*
27741575 TTTTAAAAATTC-AAAAAATTTCTAAAAATA
1 TTTTAAAAATTCTAAAATATTT-T-AAAATA
27741605 TTTTAAAAATTCTAAAATATTTTAAAAT-
1 TTTTAAAAATTCTAAAATATTTTAAAATA
*
27741633 TTTTCAAAAATTCTAAAACT-TCTT-AAATAA
1 TTTT-AAAAATTCTAAAA-TATTTTAAAAT-A
27741663 TTTTAAAAA
1 TTTTAAAAA
27741672 ATTTTAGAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
28 8 0.13
29 26 0.43
30 18 0.30
31 8 0.13
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (29 bp):
TTTTAAAAATTCTAAAATATTTTAAAATA
Found at i:27742736 original size:19 final size:20
Alignment explanation
Indices: 27742712--27742751 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
27742702 CAGTATAAAA
27742712 TTTAAA-ATTTTTTAAAACT
1 TTTAAATATTTTTTAAAACT
*
27742731 TTTAAATTTTTTTTAAAACT
1 TTTAAATATTTTTTAAAACT
27742751 T
1 T
27742752 GGAATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTAAATATTTTTTAAAACT
Found at i:27742739 original size:18 final size:17
Alignment explanation
Indices: 27742707--27742742 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
27742697 AGTATCAGTA
27742707 TAAAATTTAAAATTTTT
1 TAAAATTTAAAATTTTT
*
27742724 TAAAACTTTTAAATTTTT
1 TAAAA-TTTAAAATTTTT
27742742 T
1 T
27742743 TTAAAACTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
TAAAATTTAAAATTTTT
Found at i:27755681 original size:13 final size:13
Alignment explanation
Indices: 27755663--27755687 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27755653 ACATTTTGGT
27755663 TGTATCATGGTTC
1 TGTATCATGGTTC
27755676 TGTATCATGGTT
1 TGTATCATGGTT
27755688 TATACCATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.12, G:0.24, T:0.48
Consensus pattern (13 bp):
TGTATCATGGTTC
Found at i:27756952 original size:23 final size:23
Alignment explanation
Indices: 27756896--27756953 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
27756886 AAATTTATAC
*
27756896 AAAA-ATAAAATAAAAAAACAGA
1 AAAATATAAAATTAAAAAACAGA
* * *
27756918 AAAATATTAAATTAAATAATAGA
1 AAAATATAAAATTAAAAAACAGA
*
27756941 AATATATAAAATT
1 AAAATATAAAATT
27756954 GAGCAACAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
22 4 0.14
23 25 0.86
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.24
Consensus pattern (23 bp):
AAAATATAAAATTAAAAAACAGA
Found at i:27757800 original size:6 final size:6
Alignment explanation
Indices: 27757785--27757817 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
27757775 AAGTTGCTAG
*
27757785 AAAAGA AAAAGC AAAAGA AAAAGA AAAA-A AAAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAA
27757818 AAATAAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.85, C:0.03, G:0.12, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:27757800 original size:12 final size:11
Alignment explanation
Indices: 27757783--27757825 Score: 54
Period size: 12 Copynumber: 4.0 Consensus size: 11
27757773 AAAAGTTGCT
27757783 AGAAAAGAAAA
1 AGAAAAGAAAA
27757794 AGCAAAAGAAAA
1 AG-AAAAGAAAA
27757806 AGAAAA-AAAA
1 AGAAAAGAAAA
*
27757816 A-AAAATAAAA
1 AGAAAAGAAAA
27757826 TGGGTGTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 4 0.13
10 9 0.30
11 6 0.20
12 11 0.37
ACGTcount: A:0.84, C:0.02, G:0.12, T:0.02
Consensus pattern (11 bp):
AGAAAAGAAAA
Found at i:27758132 original size:44 final size:41
Alignment explanation
Indices: 27758078--27758238 Score: 133
Period size: 44 Copynumber: 3.7 Consensus size: 41
27758068 AAGTTCAACA
*
27758078 ACTTTAAAAAATTTAAAGAGGCTCCTCTAAGCTTAGGCTCAATG
1 ACTTTAAAAAATATAAA-AGGCTCCTCTAAG--TAGGCTCAATG
* * * * * **
27758122 GCTTTTAAAAATATAAATGGTTCCTCTAAAGAGAGGCTCAACA
1 ACTTTAAAAAATATAAAAGGCTCCTCT-AAG-TAGGCTCAATG
* *
27758165 ACTTTAAAAAATTTAAAGAGGCTTCTCTAAGTAGATGCTCAATG
1 ACTTTAAAAAATATAAA-AGGCTCCTCTAAGTAG--GCTCAATG
* * *
27758209 ACTTTTAAAAATATAAATGGCTCGTCTAAG
1 ACTTTAAAAAATATAAAAGGCTCCTCTAAG
27758239 CAGGGCTTGA
Statistics
Matches: 90, Mismatches: 23, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
42 2 0.02
43 43 0.48
44 45 0.50
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (41 bp):
ACTTTAAAAAATATAAAAGGCTCCTCTAAGTAGGCTCAATG
Found at i:27758171 original size:87 final size:86
Alignment explanation
Indices: 27758031--27758237 Score: 265
Period size: 87 Copynumber: 2.4 Consensus size: 86
27758021 CAAAGGTTTG
* * * * * *
27758031 ATGACTTTTGAAAATTTAAGAGGGCTTCTCT-AAGCAGAAGTTCAACAACTTTAAAAAATTTAAA
1 ATGACTTTTAAAAATATAA-ATGGCTCCTCTAAAG-AGAGGCTCAACAACTTTAAAAAATTTAAA
27758095 GAGGCTCCTCTAAGCTTAG-GCTCA
64 GAGGCTCCTCTAAG--TAGAGCTCA
* *
27758119 ATGGCTTTTAAAAATATAAATGGTTCCTCTAAAGAGAGGCTCAACAACTTTAAAAAATTTAAAGA
1 ATGACTTTTAAAAATATAAATGGCTCCTCTAAAGAGAGGCTCAACAACTTTAAAAAATTTAAAGA
*
27758184 GGCTTCTCTAAGTAGATGCTCA
66 GGCTCCTCTAAGTAGA-GCTCA
*
27758206 ATGACTTTTAAAAATATAAATGGCTCGTCTAA
1 ATGACTTTTAAAAATATAAATGGCTCCTCTAA
27758238 GCAGGGCTTG
Statistics
Matches: 104, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
85 3 0.03
87 82 0.79
88 19 0.18
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (86 bp):
ATGACTTTTAAAAATATAAATGGCTCCTCTAAAGAGAGGCTCAACAACTTTAAAAAATTTAAAGA
GGCTCCTCTAAGTAGAGCTCA
Found at i:27758317 original size:49 final size:47
Alignment explanation
Indices: 27758248--27758650 Score: 380
Period size: 49 Copynumber: 8.3 Consensus size: 47
27758238 GCAGGGCTTG
*
27758248 ACAAC-TTAAAATTTCATCTTGAAAAAAGCTCCTTTAAGCAAAAGCTCA
1 ACAACTTTAAAATTT-ATCTTG-AAAAAGCTCCTTTAAGCAAAGGCTCA
* * *
27758296 ACAACTTTAAAAATTTTTCTTGAAAAAGCTCCTTTAAGTAGAGGCTCA
1 ACAACTTT-AAAATTTATCTTGAAAAAGCTCCTTTAAGCAAAGGCTCA
* * * *
27758344 ACAACTTTAAAATTCTCATCTTGAAAAAGCTCATCTAAGCAGAGACTCA
1 ACAACTTTAAAATT-T-ATCTTGAAAAAGCTCCTTTAAGCAAAGGCTCA
* *
27758393 ACAACTTTAAAATTCTTATCTTGAAAAAGCTCCTCTAAACAAAGGCTCA
1 ACAACTTTAAAA-T-TTATCTTGAAAAAGCTCCTTTAAGCAAAGGCTCA
* * * *
27758442 ACAACTTTAAAATTTCATCTTGAAAAAGCTCCTATAAGTAGATGCTCA
1 ACAACTTTAAAATTT-ATCTTGAAAAAGCTCCTTTAAGCAAAGGCTCA
* * * * *
27758490 ATAACATTAAAATTTTCATCTTGGAAAAGCT-CTTCTAAGCAAATGCTTA
1 ACAACTTTAAAA-TTT-ATCTTGAAAAAGCTCCTT-TAAGCAAAGGCTCA
* * * * * *
27758539 ACAATTTTAAAAATTCATCTTGAAAAATCTTCTCTAAGCAGAGGCTCA
1 ACAACTTT-AAAATTTATCTTGAAAAAGCTCCTTTAAGCAAAGGCTCA
* * * * * *
27758587 AAAATTTTAAAATTTTCATCTTGGAAAAGCTCATTTAAGCAGAGGTTCA
1 ACAACTTTAAAA-TTT-ATCTTGAAAAAGCTCCTTTAAGCAAAGGCTCA
27758636 ACAACTTT-AAATTTA
1 ACAACTTTAAAATTTA
27758651 AACTATTGAA
Statistics
Matches: 297, Mismatches: 45, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
46 1 0.00
47 15 0.05
48 112 0.38
49 155 0.52
50 13 0.04
51 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.31
Consensus pattern (47 bp):
ACAACTTTAAAATTTATCTTGAAAAAGCTCCTTTAAGCAAAGGCTCA
Found at i:27758371 original size:97 final size:96
Alignment explanation
Indices: 27758248--27758646 Score: 446
Period size: 97 Copynumber: 4.1 Consensus size: 96
27758238 GCAGGGCTTG
*
27758248 ACAAC-TTAAAATTTCATCTTGAAAAAAGCTCCTTTAAGCAAAAGCTCAACAACTTTAAAAATTT
1 ACAACTTTAAAATTTCATCTTG-AAAAAGCTCCTCTAAGCAAAAGCTCAACAACTTT-AAAATTT
* *
27758312 T-TCTTGAAAAAGCTCCTTTAAGTAGAGGCTCA
64 TATCTTGAAAAAGCTCCTTTAAGCAAAGGCTCA
* *
27758344 ACAACTTTAAAATTCTCATCTTGAAAAAGCTCATCTAAGC-AGAGACTCAACAACTTTAAAATTC
1 ACAACTTTAAAATT-TCATCTTGAAAAAGCTCCTCTAAGCAAAAG-CTCAACAACTTTAAAATT-
* *
27758408 TTATCTTGAAAAAGCTCCTCTAAACAAAGGCTCA
63 TTATCTTGAAAAAGCTCCTTTAAGCAAAGGCTCA
* * * * * *
27758442 ACAACTTTAAAATTTCATCTTGAAAAAGCTCCTATAAGTAGATGCTCAATAACATTAAAATTTTC
1 ACAACTTTAAAATTTCATCTTGAAAAAGCTCCTCTAAGCAAAAGCTCAACAACTTTAAAATTTT-
* * *
27758507 ATCTTGGAAAAGCT-CTTCTAAGCAAATGCTTA
65 ATCTTGAAAAAGCTCCTT-TAAGCAAAGGCTCA
* * * * * * * *
27758539 ACAATTTTAAAAATTCATCTTGAAAAATCTTCTCTAAGCAGAGGCTCAAAAATTTTAAAATTTTC
1 ACAACTTTAAAATTTCATCTTGAAAAAGCTCCTCTAAGCAAAAGCTCAACAACTTTAAAATTTT-
* * * *
27758604 ATCTTGGAAAAGCTCATTTAAGCAGAGGTTCA
65 ATCTTGAAAAAGCTCCTTTAAGCAAAGGCTCA
27758636 ACAACTTTAAA
1 ACAACTTTAAA
27758647 TTTAAACTAT
Statistics
Matches: 258, Mismatches: 36, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
96 18 0.07
97 188 0.73
98 52 0.20
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (96 bp):
ACAACTTTAAAATTTCATCTTGAAAAAGCTCCTCTAAGCAAAAGCTCAACAACTTTAAAATTTTA
TCTTGAAAAAGCTCCTTTAAGCAAAGGCTCA
Found at i:27758441 original size:146 final size:144
Alignment explanation
Indices: 27758248--27758646 Score: 482
Period size: 146 Copynumber: 2.7 Consensus size: 144
27758238 GCAGGGCTTG
* *
27758248 ACAAC-TTAAAATT-TCATCTTGAAAAAAGCTCCTTTAAGCAAAAGCTCAACAACTTTAAAAATT
1 ACAACTTTAAAATTCT-ATCTTG-AAAAAGCTCCTCTAAGCAAAGGCTCAACAACTTT-AAAATT
27758311 TTTCTTGAAAAAGCTCCTTTAAGTAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAAGCTC
63 TTTCTTGAAAAAGCTCCTTTAAGTAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAAGCTC
*
27758376 ATCTAAGCAGA-GACTCA
128 ATCTAAGCAAATG-CTCA
*
27758393 ACAACTTTAAAATTCTTATCTTGAAAAAGCTCCTCTAAACAAAGGCTCAACAACTTTAAAATTTC
1 ACAACTTTAAAATTC-TATCTTGAAAAAGCTCCTCTAAGCAAAGGCTCAACAACTTTAAAATTT-
* * * * * * * *
27758458 ATCTTGAAAAAGCTCCTATAAGTAGATGCTCAATAACATTAAAATTTTCATCTTGGAAAAGCTCT
64 TTCTTGAAAAAGCTCCTTTAAGTAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAAGCTCA
*
27758523 TCTAAGCAAATGCTTA
129 TCTAAGCAAATGCTCA
* * * * * *
27758539 ACAATTTTAAAAATTC-ATCTTGAAAAATCTTCTCTAAGCAGAGGCTCAAAAATTTTAAAATTTT
1 ACAACTTT-AAAATTCTATCTTGAAAAAGCTCCTCTAAGCAAAGGCTCAACAACTTTAAAATTTT
* * * *
27758603 CATCTTGGAAAAGCTCATTTAAGCAGAGGTTCAACAACTTTAAA
65 --TCTTGAAAAAGCTCCTTTAAGTAGAGGCTCAACAACTTTAAA
27758647 TTTAAACTAT
Statistics
Matches: 217, Mismatches: 29, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
145 53 0.24
146 149 0.69
147 14 0.06
148 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (144 bp):
ACAACTTTAAAATTCTATCTTGAAAAAGCTCCTCTAAGCAAAGGCTCAACAACTTTAAAATTTTT
CTTGAAAAAGCTCCTTTAAGTAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAAGCTCATC
TAAGCAAATGCTCA
Found at i:27759054 original size:48 final size:45
Alignment explanation
Indices: 27758956--27759195 Score: 214
Period size: 42 Copynumber: 5.4 Consensus size: 45
27758946 ACTGAAGGAA
* * *
27758956 ACTCGAATATCACCAAC-GAG-A-AAATGCAATTCAAGCTTTAAT
1 ACTCGGATATCACCACCAGAGAAGAAATGCAATTCAAACTTTAAT
**
27758998 ACTTAGATATCACCACCGAGAGAATGCAAATGCAAATTCAAACTTTAA-
1 ACTCGGATATCACCACC-AGAGAA-G-AAATGC-AATTCAAACTTTAAT
* *
27759046 ACTCAGATATCATCACCA-AGAAG--ATGCAATTCAAACTTTAAT
1 ACTCGGATATCACCACCAGAGAAGAAATGCAATTCAAACTTTAAT
* * *
27759088 ACTTGGATATCACCACCGAGATAATGCAAATGCAAATTTAAACTTTAA-
1 ACTCGGATATCACCACC-AGAGAA-G-AAATGC-AATTCAAACTTTAAT
* * *
27759136 ACTCGGATATCACCATC-GAGAAG--ATGCAATTCAAACCTTAAC
1 ACTCGGATATCACCACCAGAGAAGAAATGCAATTCAAACTTTAAT
27759178 ACTCGGATATCACCACCA
1 ACTCGGATATCACCACCA
27759196 AAAAGATAAA
Statistics
Matches: 163, Mismatches: 18, Indels: 33
0.76 0.08 0.15
Matches are distributed among these distances:
41 26 0.16
42 51 0.31
43 1 0.01
44 6 0.04
45 4 0.02
46 8 0.05
47 1 0.01
48 40 0.25
49 26 0.16
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (45 bp):
ACTCGGATATCACCACCAGAGAAGAAATGCAATTCAAACTTTAAT
Found at i:27759107 original size:90 final size:90
Alignment explanation
Indices: 27758954--27759194 Score: 340
Period size: 90 Copynumber: 2.7 Consensus size: 90
27758944 CCACTGAAGG
* * * * *
27758954 AAACTC-GAATATCACCAACGAGAAAATGCAATTCAAGCTTTAATACTTAGATATCACCACCGAG
1 AAACTCAG-ATATCACCACCAAGAAGATGCAATTCAAACTTTAATACTTGGATATCACCACCGAG
27759018 AGAATGCAAATGCAAATTCAAACTTT
65 AGAATGCAAATGCAAATTCAAACTTT
*
27759044 AAACTCAGATATCATCACCAAGAAGATGCAATTCAAACTTTAATACTTGGATATCACCACCGAGA
1 AAACTCAGATATCACCACCAAGAAGATGCAATTCAAACTTTAATACTTGGATATCACCACCGAGA
* *
27759109 TAATGCAAATGCAAATTTAAACTTT
66 GAATGCAAATGCAAATTCAAACTTT
* * * * * *
27759134 AAACTCGGATATCACCATCGAGAAGATGCAATTCAAACCTTAACACTCGGATATCACCACC
1 AAACTCAGATATCACCACCAAGAAGATGCAATTCAAACTTTAATACTTGGATATCACCACC
27759195 AAAAAGATAA
Statistics
Matches: 135, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
90 134 0.99
91 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (90 bp):
AAACTCAGATATCACCACCAAGAAGATGCAATTCAAACTTTAATACTTGGATATCACCACCGAGA
GAATGCAAATGCAAATTCAAACTTT
Found at i:27759235 original size:90 final size:90
Alignment explanation
Indices: 27758954--27759245 Score: 275
Period size: 90 Copynumber: 3.2 Consensus size: 90
27758944 CCACTGAAGG
* * * * * ** *
27758954 AAACTC-GAATATCACCAACGAGAAAATGCAATTCAAGCTTTAATACTTAGATATCACCACCGAG
1 AAACTCAG-ATATCACCACCGAGAAGATGCAATTCAAACCTTAACACTCGGATATCACCACCGAA
* ** *
27759018 AGAATGCAAATGCAAATTCAAACTTT
65 AAAATAAAAATGCAAATTTAAACTTT
* * * * * *
27759044 AAACTCAGATATCATCACCAAGAAGATGCAATTCAAACTTTAATACTTGGATATCACCACCGAGA
1 AAACTCAGATATCACCACCGAGAAGATGCAATTCAAACCTTAACACTCGGATATCACCACCGAAA
* **
27759109 TAATGCAAATGCAAATTTAAACTTT
66 AAATAAAAATGCAAATTTAAACTTT
* *
27759134 AAACTCGGATATCACCATCGAGAAGATGCAATTCAAACCTTAACACTCGGATATCACCACC-AAA
1 AAACTCAGATATCACCACCGAGAAGATGCAATTCAAACCTTAACACTCGGATATCACCACCGAAA
** ****
27759198 AAGATAAAAATG-ACCTTTTTTTTTT
66 AA-ATAAAAATGCAAATTTAAACTTT
27759223 AATACTCAGATATCACCACCGAG
1 AA-ACTCAGATATCACCACCGAG
27759246 TGATTTTGAA
Statistics
Matches: 172, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
89 12 0.07
90 159 0.92
91 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.25
Consensus pattern (90 bp):
AAACTCAGATATCACCACCGAGAAGATGCAATTCAAACCTTAACACTCGGATATCACCACCGAAA
AAATAAAAATGCAAATTTAAACTTT
Found at i:27759496 original size:41 final size:41
Alignment explanation
Indices: 27759417--27759500 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 41
27759407 TGCAAATCCA
* ** *
27759417 AATTCAAACTTTAAACTTGGATATCACCATCGAGAAGATGC
1 AATTCAAACCTTAAACTCAGATATCACCACCGAGAAGATGC
27759458 AATTCAAACCTTAACACTCAGATATCACCACCGA-AAGATGC
1 AATTCAAACCTTAA-ACTCAGATATCACCACCGAGAAGATGC
27759499 AA
1 AA
27759501 ATAACCCTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
41 22 0.58
42 16 0.42
ACGTcount: A:0.42, C:0.24, G:0.12, T:0.23
Consensus pattern (41 bp):
AATTCAAACCTTAAACTCAGATATCACCACCGAGAAGATGC
Found at i:27759646 original size:293 final size:295
Alignment explanation
Indices: 27759073--27759646 Score: 918
Period size: 293 Copynumber: 2.0 Consensus size: 295
27759063 AAGAAGATGC
* * * *
27759073 AATTCAAACTTTAATACTTGGATATCACCACCGAGATAATGCAAATGCAAATTTAAACTTTAAAC
1 AATTCAAACTTTAATACTCGGATATCACCACCGAGAGAATGCAAATCCAAATTCAAACTTTAAAC
*
27759138 TCGGATATCACCATCGAGAAGATGCAATTCAAACCTTAACACTCGGATATCACCACCAAAAAGAT
66 TCGGATATCACCATCGAGAAGATGCAATTCAAACCTTAACACTCAGATATCACCACCAAAAAGAT
* * *
27759203 AAAAATGACCTTTTTTTTTTAATACTCAGATATCACCACCGAGTGATTTTGAAAATGTCTTGGAC
131 AAAAATAACCTCTTTTTTTTAATACGCAGATATCACCACCGAGTGATTTTGAAAATGTCTTGGAC
* *
27759268 TTCACCACTAAGAAAATGCAAATGAAAATTTAAACTTTAAACTTAAATATCACCACCGATAATAT
196 TTCACCACTAAGAAAATGCAAATGAAAATCTAAACTTTAAACTCAAATATCACCACCGATAATAT
27759333 ACAAATGACTTCGAATATCACTATTAAGAAAATAT
261 ACAAATGACTTCGAATATCACTATTAAGAAAATAT
*
27759368 AATTCAAGCTTTAATACTCGGATATCACCACCGAGAGAATGCAAATCCAAATTCAAACTTTAAAC
1 AATTCAAACTTTAATACTCGGATATCACCACCGAGAGAATGCAAATCCAAATTCAAACTTTAAAC
* *
27759433 TTGGATATCACCATCGAGAAGATGCAATTCAAACCTTAACACTCAGATATCACCACC-GAAAGAT
66 TCGGATATCACCATCGAGAAGATGCAATTCAAACCTTAACACTCAGATATCACCACCAAAAAGAT
** * * *
27759497 GCAAATAACC-CTTTTTTTTAATACGCGGATGTCACCACCGAGTGATTTTGAAAATGTCTTGGAT
131 AAAAATAACCTCTTTTTTTTAATACGCAGATATCACCACCGAGTGATTTTGAAAATGTCTTGGAC
* ** *
27759561 TTCATCACTAAGAAAATGCAAATGAAAATCTAAACTTTAAACTCGGATATCACCATCGATAATAT
196 TTCACCACTAAGAAAATGCAAATGAAAATCTAAACTTTAAACTCAAATATCACCACCGATAATAT
* *
27759626 GCAAATGACTTCGGATATCAC
261 ACAAATGACTTCGAATATCAC
27759647 CACCGAAGGA
Statistics
Matches: 255, Mismatches: 24, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
293 127 0.50
294 13 0.05
295 115 0.45
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (295 bp):
AATTCAAACTTTAATACTCGGATATCACCACCGAGAGAATGCAAATCCAAATTCAAACTTTAAAC
TCGGATATCACCATCGAGAAGATGCAATTCAAACCTTAACACTCAGATATCACCACCAAAAAGAT
AAAAATAACCTCTTTTTTTTAATACGCAGATATCACCACCGAGTGATTTTGAAAATGTCTTGGAC
TTCACCACTAAGAAAATGCAAATGAAAATCTAAACTTTAAACTCAAATATCACCACCGATAATAT
ACAAATGACTTCGAATATCACTATTAAGAAAATAT
Found at i:27759763 original size:48 final size:48
Alignment explanation
Indices: 27759686--27759896 Score: 155
Period size: 42 Copynumber: 4.6 Consensus size: 48
27759676 AAAAAAATAC
* *
27759686 AATTCAAGCTTTAATAGTCGGATATCACCACTGAAAGAATGCAAATGTA
1 AATTCAAACTTTAATACTCGGATATCACCACTGAAAGAATGCAAATG-A
* *
27759735 AATTCAAACTTTAA-ACTCGGATATCACCA-T-CAAGAA-G---ATGC
1 AATTCAAACTTTAATACTCGGATATCACCACTGAAAGAATGCAAATGA
*** * * *
27759776 AATTCAAACTTTAATACTTAAATATCACCAC-CAAGAGAATACAAATACA
1 AATTCAAACTTTAATACTCGGATATCACCACTGAA-AGAATGCAAAT-GA
* * *
27759825 AATTCAAACTTTAA-ACTTGGATATCACCACCG--AGAA-G---ATGC
1 AATTCAAACTTTAATACTCGGATATCACCACTGAAAGAATGCAAATGA
* *
27759866 AATTCAAACCTTAACACTCGGATATCACCAC
1 AATTCAAACTTTAATACTCGGATATCACCAC
27759897 CAAAAAGATG
Statistics
Matches: 132, Mismatches: 19, Indels: 29
0.73 0.11 0.16
Matches are distributed among these distances:
41 27 0.20
42 32 0.24
43 1 0.01
44 4 0.03
45 1 0.01
46 9 0.07
47 1 0.01
48 30 0.23
49 27 0.20
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.25
Consensus pattern (48 bp):
AATTCAAACTTTAATACTCGGATATCACCACTGAAAGAATGCAAATGA
Found at i:27759811 original size:42 final size:41
Alignment explanation
Indices: 27759735--27759906 Score: 173
Period size: 42 Copynumber: 4.0 Consensus size: 41
27759725 TGCAAATGTA
*
27759735 AATTCAAACTTTAAACTCGGATATCACCATCAAGAAGATGC
1 AATTCAAACTTTAAACTCGGATATCACCACCAAGAAGATGC
*** * *
27759776 AATTCAAACTTTAATACTTAAATATCACCACCAAGAGAATACAAATAC
1 AATTCAAACTTTAA-ACTCGGATATCACCACC-A-AG---A-AGATGC
* *
27759824 AAATTCAAACTTTAAACTTGGATATCACCACCGAGAAGATGC
1 -AATTCAAACTTTAAACTCGGATATCACCACCAAGAAGATGC
* *
27759866 AATTCAAACCTTAACACTCGGATATCACCACCAAAAAGATG
1 AATTCAAACTTTAA-ACTCGGATATCACCACCAAGAAGATG
27759907 TAAATGACCT
Statistics
Matches: 107, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
41 27 0.25
42 40 0.37
43 2 0.02
44 2 0.02
46 2 0.02
47 1 0.01
48 19 0.18
49 14 0.13
ACGTcount: A:0.44, C:0.23, G:0.10, T:0.23
Consensus pattern (41 bp):
AATTCAAACTTTAAACTCGGATATCACCACCAAGAAGATGC
Found at i:27759815 original size:90 final size:89
Alignment explanation
Indices: 27759656--27759900 Score: 301
Period size: 90 Copynumber: 2.7 Consensus size: 89
27759646 CCACCGAAGG
* * * * * * *
27759656 AAACTCGAATATCACCATCGAAAAAAATACAATTCAAGCTTTAATAGTCGGATATCACCACTGAA
1 AAACTCGGATATCACCATC-AAGAAGATGCAATTCAAACTTTAATACTCGGATATCACCAC-CAA
* **
27759721 AGAATGCAAATGTAAATTCAAACTTT
64 AGAATACAAATACAAATTCAAACTTT
***
27759747 AAACTCGGATATCACCATCAAGAAGATGCAATTCAAACTTTAATACTTAAATATCACCACCAAGA
1 AAACTCGGATATCACCATCAAGAAGATGCAATTCAAACTTTAATACTCGGATATCACCACCAA-A
27759812 GAATACAAATACAAATTCAAACTTT
65 GAATACAAATACAAATTCAAACTTT
* * * * *
27759837 AAACTTGGATATCACCACCGAGAAGATGCAATTCAAACCTTAACACTCGGATATCACCACCAAA
1 AAACTCGGATATCACCATCAAGAAGATGCAATTCAAACTTTAATACTCGGATATCACCACCAAA
27759901 AAGATGTAAA
Statistics
Matches: 132, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
89 3 0.02
90 111 0.84
91 18 0.14
ACGTcount: A:0.44, C:0.22, G:0.10, T:0.23
Consensus pattern (89 bp):
AAACTCGGATATCACCATCAAGAAGATGCAATTCAAACTTTAATACTCGGATATCACCACCAAAG
AATACAAATACAAATTCAAACTTT
Found at i:27760005 original size:408 final size:406
Alignment explanation
Indices: 27759368--27760188 Score: 1281
Period size: 408 Copynumber: 2.0 Consensus size: 406
27759358 AAGAAAATAT
* ** * * *
27759368 AATTCAAGCTTTAATACTCGGATATCACCACCGAGAGAATGCAAATCCAAATTCAAACTTTAAAC
1 AATTCAAACTTTAATACTCAAATATCACCACCAAGAGAATACAAATACAAATTCAAACTTTAAAC
* *
27759433 TTGGATATCACCATCGAGAAGATGCAATTCAAACCTTAACACTCAGATATCACCACCGAAAGATG
66 TTGGATATCACCACCGAGAAGATGCAATTCAAACCTTAACACTCAGATATCACCACCAAAAGATG
*
27759498 CAAATAACCCTTTTTTTTAATACGCGGATGTCACCACCGAGTGATTTTGAAAATGTCTTGGATTT
131 CAAATAACCCTTTTTTTTAATACGCGGATATCACCACCGAGTGATTTTGAAAATGTCTTGGATTT
*
27759563 CATCACTAAGAAAATGCAAATGAAAATCTAAACTTTAAACTCGGATATCACCA-TCGATAATATG
196 CACCACTAAGAAAATGCAAATGAAAATCTAAACTTTAAACTCGGATATCACCACT-GATAATATG
** *
27759627 CAAATGACTTCGGATATCACCACCGAAGGAAACTCGAATATCACCATCGAAAAAAATACAATTCA
260 CAAATGACTTCAAATATCACCACCGAAGGAAACTCGAATATCACCAT-AAAAAAAATACAATTCA
* **
27759692 AGCTTTAATAGTCGGATATCACCACTGAAAGAATGCAAATGTAAATTCAAACTTTAAACTCGGAT
324 AGCTTTAATACTCGGATATCACCACTGAAAGAATGCAAATACAAATTCAAA-TTTAAACTCGGAT
27759757 ATCACCATCAAGAAGATGC
388 ATCACCATCAAGAAGATGC
*
27759776 AATTCAAACTTTAATACTTAAATATCACCACCAAGAGAATACAAATACAAATTCAAACTTTAAAC
1 AATTCAAACTTTAATACTCAAATATCACCACCAAGAGAATACAAATACAAATTCAAACTTTAAAC
*
27759841 TTGGATATCACCACCGAGAAGATGCAATTCAAACCTTAACACTCGGATATCACCACCAAAAAGAT
66 TTGGATATCACCACCGAGAAGATGCAATTCAAACCTTAACACTCAGATATCACCACC-AAAAGAT
* * * * *
27759906 GTAAATGACCTTTTTTTTTAATACTCGGATATCACCATCGAGTGATTTTGAAAATGTCTTGGATT
130 GCAAATAACCCTTTTTTTTAATACGCGGATATCACCACCGAGTGATTTTGAAAATGTCTTGGATT
27759971 TCACCA-TCAAGAAAATGTC-AATGAAAAT-TAAACTTTAAACTCGGATATCACCACTGATAATA
195 TCACCACT-AAGAAAATG-CAAATGAAAATCTAAACTTTAAACTCGGATATCACCACTGATAATA
* * *
27760033 TGCAAATGACTTTAAATATCACCACCGAAGGAAACTCGAATATCATCATAAAAAAAATGCAATTC
258 TGCAAATGACTTCAAATATCACCACCGAAGGAAACTCGAATATCACCATAAAAAAAATACAATTC
* * *
27760098 AAGCTTTAATACTCGGATATCACCATTGAGAGAATGCAAATACAAATTCAAATTTAAACTTGGAT
323 AAGCTTTAATACTCGGATATCACCACTGAAAGAATGCAAATACAAATTCAAATTTAAACTCGGAT
* *
27760163 ATCACTATCGAGAAGATGC
388 ATCACCATCAAGAAGATGC
27760182 AATTCAA
1 AATTCAA
27760189 GCCTTAACAC
Statistics
Matches: 378, Mismatches: 31, Indels: 10
0.90 0.07 0.02
Matches are distributed among these distances:
406 36 0.10
407 61 0.16
408 191 0.51
409 89 0.24
410 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (406 bp):
AATTCAAACTTTAATACTCAAATATCACCACCAAGAGAATACAAATACAAATTCAAACTTTAAAC
TTGGATATCACCACCGAGAAGATGCAATTCAAACCTTAACACTCAGATATCACCACCAAAAGATG
CAAATAACCCTTTTTTTTAATACGCGGATATCACCACCGAGTGATTTTGAAAATGTCTTGGATTT
CACCACTAAGAAAATGCAAATGAAAATCTAAACTTTAAACTCGGATATCACCACTGATAATATGC
AAATGACTTCAAATATCACCACCGAAGGAAACTCGAATATCACCATAAAAAAAATACAATTCAAG
CTTTAATACTCGGATATCACCACTGAAAGAATGCAAATACAAATTCAAATTTAAACTCGGATATC
ACCATCAAGAAGATGC
Found at i:27760134 original size:42 final size:40
Alignment explanation
Indices: 27760087--27760207 Score: 98
Period size: 47 Copynumber: 2.8 Consensus size: 40
27760077 ATCATAAAAA
*
27760087 AAATGCAATTCAAGCTTTAATACTCGGATATCACCATTGAG
1 AAATGCAATTCAAGCTTTAA-ACTCGGATATCACCATCGAG
* * * *
27760128 AGAATGCAAATACAAATTCAAATTTAAACTTGGATATCACTATCGAG
1 A-AATGC-AATTC-AA-GC---TTTAAACTCGGATATCACCATCGAG
*
27760175 AAGATGCAATTCAAGCCTTAACACTCGGATATC
1 AA-ATGCAATTCAAGCTTTAA-ACTCGGATATC
27760208 GCTATTGAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 17
0.70 0.10 0.19
Matches are distributed among these distances:
41 5 0.08
42 15 0.24
43 4 0.06
44 3 0.05
45 3 0.05
46 5 0.08
47 22 0.35
48 5 0.08
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (40 bp):
AAATGCAATTCAAGCTTTAAACTCGGATATCACCATCGAG
Found at i:27762180 original size:23 final size:21
Alignment explanation
Indices: 27762152--27762193 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
27762142 AATCAAAATT
27762152 TTATTTTTATCACCTTTTTTTAA
1 TTATTTTTATCA--TTTTTTTAA
27762175 TTATTTTTATCATTTTTTT
1 TTATTTTTATCATTTTTTT
27762194 GGATCATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
23 12 0.63
ACGTcount: A:0.19, C:0.10, G:0.00, T:0.71
Consensus pattern (21 bp):
TTATTTTTATCATTTTTTTAA
Found at i:27766990 original size:13 final size:13
Alignment explanation
Indices: 27766955--27766999 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
27766945 CAAAACCAAG
27766955 AAGAGAAAG-AAA
1 AAGAGAAAGAAAA
**
27766967 AAGAGCTAGAAAA
1 AAGAGAAAGAAAA
*
27766980 AATAGAAAGAAAA
1 AAGAGAAAGAAAA
27766993 AAGAGAA
1 AAGAGAA
27767000 GGGAAAGTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
12 7 0.27
13 19 0.73
ACGTcount: A:0.71, C:0.02, G:0.22, T:0.04
Consensus pattern (13 bp):
AAGAGAAAGAAAA
Found at i:27769479 original size:101 final size:100
Alignment explanation
Indices: 27769350--27769530 Score: 247
Period size: 101 Copynumber: 1.8 Consensus size: 100
27769340 AGGAATTTTT
* * * ** * *
27769350 ATTGCGTTTGGTTTTTGTTTTTAGATGTGAACGTGGTG-AATTCTTTGAGTGAATTTGAAAGGTA
1 ATTGAGTTTAGTTTTTGTTTTTAGATGTGAACATAATGAAATT-TTTAAGTGAATATGAAAGGTA
*
27769414 GCTTTAAAAGCTTAGTCATTTAAAATGAAAAAAAAA
65 ACTTTAAAAGCTTAGTCATTTAAAATGAAAAAAAAA
* *
27769450 ATTGAGTTTAGTTTTTGTATTTTAGATGTGAATATAATGAAATTTTTAATTGAATATGAAAGGTA
1 ATTGAGTTTAGTTTTTGT-TTTTAGATGTGAACATAATGAAATTTTTAAGTGAATATGAAAGGTA
27769515 ACTTTAAAAGCTTAGT
65 ACTTTAAAAGCTTAGT
27769531 TCCATGGGTG
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
100 16 0.23
101 49 0.71
102 4 0.06
ACGTcount: A:0.34, C:0.04, G:0.20, T:0.41
Consensus pattern (100 bp):
ATTGAGTTTAGTTTTTGTTTTTAGATGTGAACATAATGAAATTTTTAAGTGAATATGAAAGGTAA
CTTTAAAAGCTTAGTCATTTAAAATGAAAAAAAAA
Found at i:27770181 original size:68 final size:68
Alignment explanation
Indices: 27770072--27770203 Score: 255
Period size: 68 Copynumber: 1.9 Consensus size: 68
27770062 TGCTGTCACC
27770072 AGATTGGTAGAATGTTCAAAACCAGCAATTCAATATCTAAATATCATTTAGTGTATATTAATTCC
1 AGATTGGTAGAATGTTCAAAACCAGCAATTCAATATCTAAATATCATTTAGTGTATATTAATTCC
27770137 ACT
66 ACT
*
27770140 AGATTGGTAGAATGTTCAAAACCAGCAATTCATTATCTAAATATCATTTAGTGTATATTAATTC
1 AGATTGGTAGAATGTTCAAAACCAGCAATTCAATATCTAAATATCATTTAGTGTATATTAATTC
27770204 TAATAAATTT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (68 bp):
AGATTGGTAGAATGTTCAAAACCAGCAATTCAATATCTAAATATCATTTAGTGTATATTAATTCC
ACT
Found at i:27776746 original size:25 final size:25
Alignment explanation
Indices: 27776712--27776763 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
27776702 AGGACTTCCA
27776712 GATGCTCAATCAAACTTTTTCTCTT
1 GATGCTCAATCAAACTTTTTCTCTT
27776737 GATGCTCAATCAAACTTTTTCTCTT
1 GATGCTCAATCAAACTTTTTCTCTT
27776762 GA
1 GA
27776764 CTATCATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (25 bp):
GATGCTCAATCAAACTTTTTCTCTT
Found at i:27783672 original size:18 final size:18
Alignment explanation
Indices: 27783645--27783695 Score: 59
Period size: 20 Copynumber: 2.8 Consensus size: 18
27783635 AAAAAGTTTT
*
27783645 AGTTTT-AAAAATTCCAA
1 AGTTTTAAAAAATTCAAA
*
27783662 AGTTTTAAAAAAAATTTAAA
1 AGTTTT--AAAAAATTCAAA
27783682 AGTTTTAAAAAATT
1 AGTTTTAAAAAATT
27783696 TTAAATTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 6 0.21
18 8 0.28
20 15 0.52
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.37
Consensus pattern (18 bp):
AGTTTTAAAAAATTCAAA
Found at i:27783676 original size:20 final size:20
Alignment explanation
Indices: 27783651--27783693 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
27783641 TTTTAGTTTT
*
27783651 AAAAATTCCAAAGTTTTAAA
1 AAAAATTCAAAAGTTTTAAA
*
27783671 AAAAATTTAAAAGTTTTAAA
1 AAAAATTCAAAAGTTTTAAA
27783691 AAA
1 AAA
27783694 TTTTAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (20 bp):
AAAAATTCAAAAGTTTTAAA
Found at i:27784294 original size:37 final size:37
Alignment explanation
Indices: 27784253--27784339 Score: 90
Period size: 36 Copynumber: 2.4 Consensus size: 37
27784243 AAAATAAAAA
* *
27784253 TTAAAGAAATCTAA-T-TTTGTTTAGAACTTTTGAAATT
1 TTAAA-AAATCTAACTATTT-TTTAAAAATTTTGAAATT
*
27784290 TTAAAAAAT-AAACTATTTTTTAAAAATTTTGAAATT
1 TTAAAAAATCTAACTATTTTTTAAAAATTTTGAAATT
*
27784326 TAAAAAAAATCTAA
1 T-TAAAAAATCTAA
27784340 AAAATGCCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
35 2 0.05
36 22 0.54
37 15 0.37
38 2 0.05
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.41
Consensus pattern (37 bp):
TTAAAAAATCTAACTATTTTTTAAAAATTTTGAAATT
Found at i:27784744 original size:10 final size:9
Alignment explanation
Indices: 27784729--27784838 Score: 85
Period size: 10 Copynumber: 11.2 Consensus size: 9
27784719 TTTTCTCTTG
27784729 AATTTTCTAA
1 AATTTT-TAA
27784739 AATTTTTTAA
1 AA-TTTTTAA
27784749 AATTATTTAA
1 AATT-TTTAA
* *
27784759 GAAGTTTTAG
1 -AATTTTTAA
27784769 AATTTTTGAA
1 AATTTTT-AA
*
27784779 AAATTTTAA
1 AATTTTTAA
*
27784788 AATATTTTAG
1 AAT-TTTTAA
27784798 AATTTTTAAA
1 AATTTTT-AA
27784808 ATATTTTTAGA
1 A-ATTTTTA-A
**
27784819 AATTTTTTG
1 AATTTTTAA
27784828 AATTTTTAA
1 AATTTTTAA
27784837 AA
1 AA
27784839 AAAATTTAGA
Statistics
Matches: 80, Mismatches: 12, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
9 25 0.31
10 40 0.50
11 15 0.19
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (9 bp):
AATTTTTAA
Found at i:27784775 original size:9 final size:9
Alignment explanation
Indices: 27784701--27784835 Score: 65
Period size: 10 Copynumber: 13.7 Consensus size: 9
27784691 CTTTTCTTTT
27784701 TTTTTAGAA
1 TTTTTAGAA
27784710 TTTATTA-AA
1 TTT-TTAGAA
*
27784719 TTTTCTCTTGAA
1 -TTT-T-TAGAA
*
27784731 TTTTCTAAAA
1 TTTT-TAGAA
*
27784741 TTTTTTAAAA
1 -TTTTTAGAA
27784751 TTATTTAAGAA
1 TT-TTT-AGAA
*
27784762 GTTTTAGAA
1 TTTTTAGAA
*
27784771 TTTTTGAAAA
1 TTTTT-AGAA
* *
27784781 ATTTTAAAA
1 TTTTTAGAA
27784790 TATTTTAGAA
1 T-TTTTAGAA
*
27784800 TTTTTAAAATA
1 TTTTT-AGA-A
27784811 TTTTTAGAAA
1 TTTTTAG-AA
*
27784821 TTTTTTGAA
1 TTTTTAGAA
27784830 TTTTTA
1 TTTTTA
27784836 AAAAAAATTT
Statistics
Matches: 99, Mismatches: 15, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
9 30 0.30
10 48 0.48
11 19 0.19
12 2 0.02
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (9 bp):
TTTTTAGAA
Found at i:27784786 original size:29 final size:28
Alignment explanation
Indices: 27784742--27784839 Score: 108
Period size: 29 Copynumber: 3.4 Consensus size: 28
27784732 TTTCTAAAAT
* *
27784742 TTTTTAAAATTATTTAAGAAGTTTTAGAA
1 TTTTTAAAAAT-TTTAAGAAATTTTAGAA
27784771 TTTTTGAAAAATTTTAA-AATATTTTAGAA
1 TTTTT-AAAAATTTTAAGAA-ATTTTAGAA
* *
27784800 TTTTTAAAATATTTTTAGAAATTTTTTGAA
1 TTTTTAAAA-ATTTTAAGAAA-TTTTAGAA
27784830 TTTTTAAAAA
1 TTTTTAAAAA
27784840 AAATTTAGAA
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
28 6 0.10
29 31 0.52
30 23 0.38
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (28 bp):
TTTTTAAAAATTTTAAGAAATTTTAGAA
Found at i:27784834 original size:20 final size:19
Alignment explanation
Indices: 27784729--27784838 Score: 87
Period size: 19 Copynumber: 5.6 Consensus size: 19
27784719 TTTTCTCTTG
*
27784729 AATTTTCTAAAATTTTTTAA
1 AATTTTTTAAAA-TTTTTAA
* * *
27784749 AATTATTTAAGAAGTTTTAG
1 AATTTTTTAA-AATTTTTAA
* *
27784769 AATTTTTGAAAAATTTTAA
1 AATTTTTTAAAATTTTTAA
* *
27784788 AATATTTTAGAATTTTTAA
1 AATTTTTTAAAATTTTTAA
**
27784807 AATATTTTTAGAAATTTTTTG
1 AAT-TTTTTA-AAATTTTTAA
27784828 AA-TTTTTAAAA
1 AATTTTTTAAAA
27784839 AAAATTTAGA
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
18 3 0.04
19 31 0.44
20 26 0.37
21 11 0.15
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (19 bp):
AATTTTTTAAAATTTTTAA
Found at i:27787121 original size:18 final size:18
Alignment explanation
Indices: 27787083--27787120 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
27787073 ATTTTTTTCA
27787083 TTTTATTTATATTTATAT
1 TTTTATTTATATTTATAT
27787101 TTTTA-TTAT-TTTATAT
1 TTTTATTTATATTTATAT
27787117 TTTT
1 TTTT
27787121 TCTCTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 11 0.55
17 4 0.20
18 5 0.25
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTATTTATATTTATAT
Found at i:27787133 original size:24 final size:23
Alignment explanation
Indices: 27787074--27787150 Score: 82
Period size: 24 Copynumber: 3.1 Consensus size: 23
27787064 AAATCTATAA
*
27787074 TTTTTTTCATTTTATTTATATTTATA
1 TTTTTTT-ATTTTATTT-T-TTTATC
*
27787100 TTTTTATTATTTTATATTTTTTCTC
1 TTTTT-TTATTTTAT-TTTTTTATC
27787125 TTTTTTTATTATTATTTTTTTATC
1 TTTTTTTATT-TTATTTTTTTATC
27787149 TT
1 TT
27787151 GGGTATTTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
24 15 0.33
25 13 0.29
26 13 0.29
27 4 0.09
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTTTTATTTTATTTTTTTATC
Found at i:27787262 original size:22 final size:21
Alignment explanation
Indices: 27787247--27787290 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
27787237 TGTTATTTAA
27787247 TTTTAATTTATCTGTTAATTT
1 TTTTAATTTATCTGTTAATTT
* *
27787268 TTTTTATTTATCTGATTTATTT
1 TTTTAATTTATCTG-TTAATTT
27787290 T
1 T
27787291 CGTTCGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (21 bp):
TTTTAATTTATCTGTTAATTT
Found at i:27788137 original size:4 final size:4
Alignment explanation
Indices: 27788130--27788173 Score: 70
Period size: 4 Copynumber: 10.8 Consensus size: 4
27788120 TTTTTTTTGA
*
27788130 ATTT ATTT ATTT ATTT ATTT GTTT ATTT ATTTT ATTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT ATT
27788174 AGATTAGGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 33 0.89
5 4 0.11
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:27788187 original size:25 final size:25
Alignment explanation
Indices: 27788135--27788189 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
27788125 TTTGAATTTA
* * *
27788135 TTTATTTATTTATTTGTTTATTTAT
1 TTTATTTATTTATTAGATTAGTTAT
*
27788160 TTTATTTATTTATTAGATTAGGTTTT
1 TTTATTTATTTATTAGATTA-GTTAT
27788186 TTTA
1 TTTA
27788190 ATATTCTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (25 bp):
TTTATTTATTTATTAGATTAGTTAT
Found at i:27788218 original size:17 final size:18
Alignment explanation
Indices: 27788195--27788234 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
27788185 TTTTAATATT
27788195 CTTTTTATCTTTATTTTA
1 CTTTTTATCTTTATTTTA
* *
27788213 -TTTTTATTTTTGTTTTA
1 CTTTTTATCTTTATTTTA
27788230 CTTTT
1 CTTTT
27788235 CTTTTCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.12, C:0.07, G:0.03, T:0.78
Consensus pattern (18 bp):
CTTTTTATCTTTATTTTA
Found at i:27788229 original size:28 final size:29
Alignment explanation
Indices: 27788197--27788258 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
27788187 TTAATATTCT
27788197 TTTTATC-TTTATTTTATTTTTATT-TTTG
1 TTTTATCTTTTATTTTATTTTT-TTATTTG
* *
27788225 TTTTA-CTTTTCTTTTCTTTTTTTATTTG
1 TTTTATCTTTTATTTTATTTTTTTATTTG
27788253 TTTTAT
1 TTTTAT
27788259 TATTCTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 3 0.10
28 26 0.90
ACGTcount: A:0.11, C:0.06, G:0.03, T:0.79
Consensus pattern (29 bp):
TTTTATCTTTTATTTTATTTTTTTATTTG
Found at i:27788264 original size:28 final size:29
Alignment explanation
Indices: 27788207--27788273 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 29
27788197 TTTTATCTTT
*
27788207 ATTTTATTTTTATTTTTGTTTTACTTTTC
1 ATTTTCTTTTTATTTTTGTTTTACTTTTC
27788236 -TTTTCTTTTT-TTATTTGTTTTA-TTATTC
1 ATTTTCTTTTTATT-TTTGTTTTACTT-TTC
27788264 TATTTTCTTT
1 -ATTTTCTTT
27788274 AAATAAAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
27 4 0.12
28 21 0.64
30 8 0.24
ACGTcount: A:0.12, C:0.07, G:0.03, T:0.78
Consensus pattern (29 bp):
ATTTTCTTTTTATTTTTGTTTTACTTTTC
Found at i:27788433 original size:59 final size:59
Alignment explanation
Indices: 27788293--27788740 Score: 595
Period size: 59 Copynumber: 7.6 Consensus size: 59
27788283 TAAAAAATAT
* * *
27788293 ATATTTTTTGGGACAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC-AAAAA
1 ATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAA
***
27788350 AGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAA
1 ATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAA
*
27788410 ATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTTAAAATCAAAGTTTCCAAAAAAA
1 ATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTT-C-AAAAAA
* * *
27788471 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCAGAAAAA
1 ATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCA-AAAAA
* *
27788530 AGGA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAA
1 A-TATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAA
* * * * *
27788590 ATATTTTTGGGGAAAAATTGAAAGTATCAATTTTCCTTTAAAA-AAAAATTTCAAAAAA
1 ATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAA
**
27788648 A-GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTC-AAAAA
1 ATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAG-TTTCAAAAAA
*
27788707 ATATTTTTTGAGAAAAGTTGAAAGTATCAATTTT
1 ATATTTTTTGGGAAAAGTTGAAAGTATCAATTTT
27788741 TCCTGCATAA
Statistics
Matches: 342, Mismatches: 35, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
57 12 0.04
58 77 0.23
59 124 0.36
60 74 0.22
61 55 0.16
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (59 bp):
ATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAA
Found at i:27788753 original size:117 final size:116
Alignment explanation
Indices: 27788297--27788740 Score: 615
Period size: 117 Copynumber: 3.8 Consensus size: 116
27788287 AAATATATAT
* * * ***
27788297 TTTTTGGGACAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTCAAAAAAGGGTTTTTG
1 TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAATATTTTTTG
* * **
27788360 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAAATAT
66 A-GAAAAGTTGAAAGTATCAATTTTCCTTGAAAA-AAAAATTTCAAAAAAA-GG
*
27788414 TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTTAAAATCAAAGTTTCCAAAAAAAATATTTTT
1 TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC--AAAAAATATTTTT
* *
27788479 AGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAAATTTCAGAAAAAAGG
64 TGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAA-AAAATTTCA-AAAAAAGG
27788533 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAATATTTTT
1 -TTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAATATTTTT
* * * *
27788598 GGGGAAAAATTGAAAGTATCAATTTTCCTTTAAAAAAAAATTTCAAAAAAAGG
64 TGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAAAAAATTTCAAAAAAAGG
*
27788651 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTCAAAAAATATTTTTT
1 TTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAATATTTTTT
27788716 GAGAAAAGTTGAAAGTATCAATTTT
65 GAGAAAAGTTGAAAGTATCAATTTT
27788741 TCCTGCATAA
Statistics
Matches: 299, Mismatches: 19, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
117 124 0.41
118 11 0.04
119 66 0.22
120 44 0.15
121 54 0.18
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (116 bp):
TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAATATTTTTTG
AGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAAAAAATTTCAAAAAAAGG
Found at i:27788997 original size:31 final size:31
Alignment explanation
Indices: 27788959--27789020 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
27788949 GATAACACAA
27788959 ATTTAAGTTGGTACCATCTTTTGATGGGCGT
1 ATTTAAGTTGGTACCATCTTTTGATGGGCGT
27788990 ATTTAAGTTGGTACCATCTTTTGATGGGCGT
1 ATTTAAGTTGGTACCATCTTTTGATGGGCGT
27789021 TGTGAGGGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.13, G:0.26, T:0.42
Consensus pattern (31 bp):
ATTTAAGTTGGTACCATCTTTTGATGGGCGT
Found at i:27794381 original size:152 final size:152
Alignment explanation
Indices: 27794105--27794555 Score: 812
Period size: 153 Copynumber: 3.0 Consensus size: 152
27794095 TTTACCAAGT
* *
27794105 AATTAGTTGTTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
1 AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
*
27794170 CTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGGGGCTCCGTCGTCGGATTTAT
66 CTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTTAT
27794235 TAAAGAAAAAACAAAATCATCC
131 TAAAGAAAAAACAAAATCATCC
*
27794257 AATTAATTATTGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
1 AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
*
27794322 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTTAT
66 CTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTTAT
*
27794387 TAAAAAAAAATACAAAATCATCC
131 TAAAGAAAAA-ACAAAATCATCC
27794410 AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
1 AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
*
27794475 CTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAAT
66 CTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTTAT
* *
27794540 TAAAGAATAAAGAAAA
131 TAAAGAAAAAACAAAA
27794556 AAAAATCAAG
Statistics
Matches: 286, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
152 139 0.49
153 147 0.51
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Consensus pattern (152 bp):
AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
CTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTTAT
TAAAGAAAAAACAAAATCATCC
Found at i:27795028 original size:31 final size:31
Alignment explanation
Indices: 27794987--27795059 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
27794977 AAACTGGGTC
* * *
27794987 TGTCGTCGGAAACTTC-AAAGTTCGCCGGAAT
1 TGTCGCCGGAAAATTCAAAAG-TCACCGGAAT
27795018 TGTCGCCGGAAAATTCAAAAGTCACCGGAAT
1 TGTCGCCGGAAAATTCAAAAGTCACCGGAAT
*
27795049 TTTCGCCGGAA
1 TGTCGCCGGAA
27795060 TATGGAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
31 33 0.89
32 4 0.11
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (31 bp):
TGTCGCCGGAAAATTCAAAAGTCACCGGAAT
Found at i:27795389 original size:12 final size:12
Alignment explanation
Indices: 27795372--27795404 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
27795362 CTAGCCCTCC
27795372 AAATAAAAATTA
1 AAATAAAAATTA
27795384 AAAT-AAAATTA
1 AAATAAAAATTA
*
27795395 AAAAAAAAAT
1 AAATAAAAAT
27795405 CTAGATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAATAAAAATTA
Found at i:27795647 original size:18 final size:18
Alignment explanation
Indices: 27795626--27795660 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
27795616 CACAAGAGAG
27795626 AAAAA-AAATAAATAAAAT
1 AAAAATAAA-AAATAAAAT
27795644 AAAAATAAAAAATAAAA
1 AAAAATAAAAAATAAAA
27795661 AATACGGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAAATAAAAAATAAAAT
Found at i:27795719 original size:20 final size:20
Alignment explanation
Indices: 27795697--27795761 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
27795687 TTGCCCATTT
* *
27795697 GGGCCAGGCCCAAATGATCT
1 GGGCCAGGCCCAATTGATCC
*
27795717 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
*
27795737 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
27795757 GGGCC
1 GGGCC
27795762 CGGACCTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (20 bp):
GGGCCAGGCCCAATTGATCC
Found at i:27795941 original size:41 final size:41
Alignment explanation
Indices: 27795905--27796375 Score: 641
Period size: 41 Copynumber: 11.5 Consensus size: 41
27795895 CAGAGGCTCT
* *
27795905 ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACC
* *
27795946 ACGACTTTGGAAAGATAAATTGCTCCTCTAAACAGAGG--CA
1 ACGACTTTGAAAAG-TAAATTGCTCCTCTAAACAGAGGTACC
* *
27795986 ACGAACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG--CA
1 ACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACC
* *
27796026 ACGAACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGTACC
1 ACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACC
* *
27796068 ACGACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGTACC
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACC
* *
27796109 ACGACTTTGGAAAAATAAATTGCTCCTCTAAAACCGAGGTACC
1 ACGACTTT-GAAAAGTAAATTGCTCCTCT-AAACAGAGGTACC
*
27796152 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACC
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACC
*
27796193 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
1 ACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGTACC
*
27796235 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACC
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACC
* *
27796276 ACGACTTCGGAAAAATAAATTGCTCCTCTAAACAGA-GTACC
1 ACGACTT-TGAAAAGTAAATTGCTCCTCTAAACAGAGGTACC
* *
27796317 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGG--CA
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACC
*
27796356 ACGAACTTTGGAAAGTAAAT
1 ACG-ACTTTGAAAAGTAAAT
27796376 ACTCCTAGAC
Statistics
Matches: 396, Mismatches: 24, Indels: 21
0.90 0.05 0.05
Matches are distributed among these distances:
39 4 0.01
40 106 0.27
41 139 0.35
42 128 0.32
43 19 0.05
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (41 bp):
ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACC
Found at i:27796288 original size:83 final size:83
Alignment explanation
Indices: 27795905--27796369 Score: 712
Period size: 83 Copynumber: 5.7 Consensus size: 83
27795895 CAGAGGCTCT
* * * *
27795905 ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGATAAATTGCT
1 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGCT
*
27795970 CCTCTAAACAGAGG--CA
66 CCTCTAAACAGAGGTACC
* * * *
27795986 ACGAACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG--CAACGAACTTTGG-AAAGTAAATTG
1 ACG-ACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACG-ACTTTGGAAAAATAAATTG
*
27796048 CTCCTCTCAACAGAGGTACC
64 CTCCTCTAAACAGAGGTACC
*
27796068 ACGACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGCT
1 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGCT
*
27796133 CCTCTAAAACCGAGGTACC
66 CCTCT-AAACAGAGGTACC
27796152 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGCT
1 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGCT
27796217 CCTCTAAACAGAGGTACC
66 CCTCTAAACAGAGGTACC
*
27796235 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTCGGAAAAATAAATTGCT
1 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGCT
27796300 CCTCTAAACAGA-GTACC
66 CCTCTAAACAGAGGTACC
*
27796317 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGG--CAACGAACTTTGGAAA
1 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACG-ACTTTGGAAA
27796370 GTAAATACTC
Statistics
Matches: 358, Mismatches: 17, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
80 32 0.09
81 52 0.15
82 85 0.24
83 109 0.30
84 80 0.22
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (83 bp):
ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGCT
CCTCTAAACAGAGGTACC
Found at i:27797581 original size:8 final size:8
Alignment explanation
Indices: 27797562--27797598 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
27797552 TCGGGATCTC
27797562 TTTTTTCA
1 TTTTTTCA
27797570 -TTTTTCA
1 TTTTTTCA
27797577 TTTTTTCA
1 TTTTTTCA
27797585 TTTTCTTCA
1 TTTT-TTCA
27797594 TTTTT
1 TTTTT
27797599 CTTCTTCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 7 0.26
8 12 0.44
9 8 0.30
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTTCA
Found at i:27797607 original size:16 final size:17
Alignment explanation
Indices: 27797562--27797598 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
27797552 TCGGGATCTC
27797562 TTTTTTCA-TTT-TTCA
1 TTTTTTCATTTTCTTCA
27797577 TTTTTTCATTTTCTTCA
1 TTTTTTCATTTTCTTCA
27797594 TTTTT
1 TTTTT
27797599 CTTCTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 8 0.40
16 3 0.15
17 9 0.45
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTTTCATTTTCTTCA
Found at i:27797613 original size:24 final size:22
Alignment explanation
Indices: 27797560--27797615 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 22
27797550 ATTCGGGATC
*
27797560 TCTTTTTTCATTTTTCATTTTT
1 TCTTTCTTCATTTTTCATTTTT
*
27797582 TCATTTTCTTCATTTTTCTTCTTCTT
1 TC--TTTCTTCATTTTTCAT-TT-TT
27797608 TCTTTCTT
1 TCTTTCTT
27797616 TTTTTTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 2 0.07
24 20 0.71
25 2 0.07
26 4 0.14
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (22 bp):
TCTTTCTTCATTTTTCATTTTT
Found at i:27797620 original size:38 final size:38
Alignment explanation
Indices: 27797572--27797645 Score: 89
Period size: 38 Copynumber: 1.9 Consensus size: 38
27797562 TTTTTTCATT
*
27797572 TTTCATTTTTTCATTTTCTTCAT-TTTTCTTC-TTCTTTC
1 TTTCATTTTTT--TTTTCATCATCTTTTCTTCATTCTTTC
* *
27797610 TTTCTTTTTTTTTTTCATCATCTTTTTTTCATTCTT
1 TTTCATTTTTTTTTTCATCATCTTTTCTTCATTCTT
27797646 CACCTATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 9 0.29
37 7 0.23
38 15 0.48
ACGTcount: A:0.08, C:0.19, G:0.00, T:0.73
Consensus pattern (38 bp):
TTTCATTTTTTTTTTCATCATCTTTTCTTCATTCTTTC
Found at i:27801645 original size:159 final size:159
Alignment explanation
Indices: 27801272--27801715 Score: 795
Period size: 159 Copynumber: 2.8 Consensus size: 159
27801262 GTTAGTTGTT
*
27801272 GAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAAGA
1 GAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGA
*
27801337 GTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTATTTAAAG---AAAA
66 GTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAAA
* *
27801399 ATCAAGATCAACCAATTAATTAATTATCG
131 ATCAAAATCAACCAAGTAATTAATTATCG
*
27801428 AAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGA
1 GAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGA
27801493 GTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAAA
66 GTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAAA
*
27801558 ATCAAAATCAGCCAAGTAATTAATTATCG
131 ATCAAAATCAACCAAGTAATTAATTATCG
27801587 GAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGA
1 GAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGA
* *
27801652 GTATGCAAGAAAAACTACTGTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAA
66 GTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAA
27801716 GAAAAAAAAT
Statistics
Matches: 276, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
156 120 0.43
159 156 0.57
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (159 bp):
GAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGA
GTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAAA
ATCAAAATCAACCAAGTAATTAATTATCG
Found at i:27802075 original size:19 final size:19
Alignment explanation
Indices: 27802051--27802096 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
27802041 CGCCGGTGGA
*
27802051 CGCCGGATTCTGGAAATTT
1 CGCCGGAATCTGGAAATTT
*
27802070 CGCCGGAATCTGGGAATTT
1 CGCCGGAATCTGGAAATTT
27802089 CGCCGGAA
1 CGCCGGAA
27802097 ATTGGCCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (19 bp):
CGCCGGAATCTGGAAATTT
Found at i:27802186 original size:31 final size:31
Alignment explanation
Indices: 27802148--27802220 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
27802138 AAACTGGGTC
*
27802148 TGTCGCCGGAAACTTC-AAAGTTCGCCGGAAT
1 TGTCGCCGGAAAATTCAAAAG-TCGCCGGAAT
27802179 TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
1 TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
*
27802210 TTTCGCCGGAA
1 TGTCGCCGGAA
27802221 TCTGGAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 35 0.90
32 4 0.10
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (31 bp):
TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
Done.