Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 33 of 147
Found at i:7001908 original size:25 final size:24
Alignment explanation
Indices: 7001874--7001945 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 24
7001864 AAACAAGAAC
7001874 ATCATGCAAATATATATCATAATT
1 ATCATGCAAATATATATCATAATT
* * *
7001898 ATTCATACAAAAATACCAT-ATAATT
1 A-TCATGCAAATATA-TATCATAATT
*
7001923 ATCATGCAAAATACATATCATAA
1 ATCATGC-AAATATATATCATAA
7001946 CTCATATTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 7
0.73 0.14 0.14
Matches are distributed among these distances:
24 8 0.22
25 27 0.73
26 2 0.05
ACGTcount: A:0.50, C:0.15, G:0.03, T:0.32
Consensus pattern (24 bp):
ATCATGCAAATATATATCATAATT
Found at i:7001950 original size:23 final size:23
Alignment explanation
Indices: 7001907--7001950 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
7001897 TATTCATACA
*
7001907 AAAATACCATATAATTATCATGC
1 AAAATACCATATAATAATCATGC
*
7001930 AAAATA-CATATCATAACTCAT
1 AAAATACCATATAATAA-TCAT
7001951 ATTAACTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.50, C:0.18, G:0.02, T:0.30
Consensus pattern (23 bp):
AAAATACCATATAATAATCATGC
Found at i:7002269 original size:12 final size:13
Alignment explanation
Indices: 7002245--7002269 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7002235 TGGAAAGGTT
7002245 AAAAAGTTAAAAA
1 AAAAAGTTAAAAA
7002258 AAAAAGTTAAAA
1 AAAAAGTTAAAA
7002270 TTTGACCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (13 bp):
AAAAAGTTAAAAA
Found at i:7005280 original size:14 final size:14
Alignment explanation
Indices: 7005263--7005320 Score: 50
Period size: 14 Copynumber: 4.1 Consensus size: 14
7005253 ACTTAATTTT
7005263 AAAATAATTAAATA
1 AAAATAATTAAATA
*
7005277 AAAAAAATTAACATAA
1 AAAATAATTAA-AT-A
7005293 AAGAATAA--AAAT-
1 AA-AATAATTAAATA
*
7005305 AAAATAAATAAATA
1 AAAATAATTAAATA
7005319 AA
1 AA
7005321 TTAAAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
11 5 0.14
12 2 0.06
13 4 0.11
14 14 0.39
15 4 0.11
16 3 0.08
17 4 0.11
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.21
Consensus pattern (14 bp):
AAAATAATTAAATA
Found at i:7005302 original size:19 final size:19
Alignment explanation
Indices: 7005271--7005326 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
7005261 TTAAAATAAT
* *
7005271 TAAATAAAAAAAATTAACA
1 TAAATAAATAAAATTAAAA
*
7005290 TAAA-AGAATAAAAATAAAA
1 TAAATA-AATAAAATTAAAA
7005309 TAAATAAAT-AAATTAAAA
1 TAAATAAATAAAATTAAAA
7005327 AAAAAACTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
18 9 0.29
19 21 0.68
20 1 0.03
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (19 bp):
TAAATAAATAAAATTAAAA
Found at i:7005331 original size:23 final size:22
Alignment explanation
Indices: 7005264--7005331 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 22
7005254 CTTAATTTTA
* *
7005264 AAATAATTAAATAAAAAAAATT
1 AAATAAATAAATAAAAAAAAAT
7005286 AACATAAA-AGAATAAAAATAAAAT
1 AA-ATAAATA-AATAAAAA-AAAAT
7005310 AAATAAATAAATTAAAAAAAAA
1 AAATAAATAAA-TAAAAAAAAA
7005332 ACTTACAAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
22 3 0.08
23 23 0.59
24 13 0.33
ACGTcount: A:0.76, C:0.01, G:0.01, T:0.21
Consensus pattern (22 bp):
AAATAAATAAATAAAAAAAAAT
Found at i:7007131 original size:14 final size:14
Alignment explanation
Indices: 7007112--7007138 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7007102 ATAGTTTAAT
7007112 ATAAGTCCTTTCAA
1 ATAAGTCCTTTCAA
7007126 ATAAGTCCTTTCA
1 ATAAGTCCTTTCA
7007139 TATTTAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.37
Consensus pattern (14 bp):
ATAAGTCCTTTCAA
Found at i:7009129 original size:156 final size:154
Alignment explanation
Indices: 7008844--7009343 Score: 916
Period size: 156 Copynumber: 3.3 Consensus size: 154
7008834 ACCATATCAG
7008844 AGAAAATTGGTTTTCCATTTGGCATGAAAATGACAATTGACAACCGAACTAGAAGACTTTTTTTT
1 AGAAAATTGGTTTTCCATTTGGCATGAAAATGACAATTGACAACCGAACTAGAAGACTTTTTTTT
7008909 TTTTTTTTCTATCTTTTAATTGGAAAATGAGCAAAGTATTTCTATAACTCATATCATTGTGGCTA
66 TTTTTTTTCTATCTTTTAATTGGAAAATGAGCAAAGTATTTCTATAACTCATATCATTGTGGCTA
7008974 CAATTCTAGCTTATTTTTTGGGTT
131 CAATTCTAGCTTATTTTTTGGGTT
7008998 AGAAAATTGGTTTTCCATTTGGCATGAAAATGACAATTGACAACCGAACTAGAAGACTTTTTTTT
1 AGAAAATTGGTTTTCCATTTGGCATGAAAATGACAATTGACAACCGAACTAGAAGAC--TTTTTT
7009063 TTTTTTTTTTCTATCTTTTAATTGGAAAATGAGCAAAGTATTTCTATAACTCATATCATTGTGGC
64 TTTTTTTTTTCTATCTTTTAATTGGAAAATGAGCAAAGTATTTCTATAACTCATATCATTGTGGC
7009128 TACAATTCTAGCTTATTTTTTGGGTT
129 TACAATTCTAGCTTATTTTTTGGGTT
*
7009154 AGAAAATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAACCGAACTAGAAGAC---TTTTT
1 AGAAAATTGGTTTTCCATTTGGCATGAAAATGACAATTGACAACCGAACTAGAAGACTTTTTTTT
* * *
7009216 TTTTATTTCCATCTTTTAATTGGAAAATGAGCAAAGTATTTCTATAACTTATATCATTGTGGCTA
66 TTTTTTTTCTATCTTTTAATTGGAAAATGAGCAAAGTATTTCTATAACTCATATCATTGTGGCTA
7009281 CAATTCTAGCTTATTTTTTGGGTT
131 CAATTCTAGCTTATTTTTTGGGTT
*
7009305 AGAAGATTGGTTTTCCATTTGGCATGAAAATGACAATTG
1 AGAAAATTGGTTTTCCATTTGGCATGAAAATGACAATTG
7009344 CTATAACTCA
Statistics
Matches: 338, Mismatches: 6, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
151 128 0.38
154 57 0.17
156 153 0.45
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (154 bp):
AGAAAATTGGTTTTCCATTTGGCATGAAAATGACAATTGACAACCGAACTAGAAGACTTTTTTTT
TTTTTTTTCTATCTTTTAATTGGAAAATGAGCAAAGTATTTCTATAACTCATATCATTGTGGCTA
CAATTCTAGCTTATTTTTTGGGTT
Found at i:7009357 original size:87 final size:87
Alignment explanation
Indices: 7009257--7009430 Score: 248
Period size: 87 Copynumber: 2.0 Consensus size: 87
7009247 CAAAGTATTT
* * *
7009257 CTATAACTTATATCATTGTGG-CTAC-AATTCTAGCTTATTTTTTGGG-TTA-GAAGATTGGTTT
1 CTATAACTCATATCATTGTGGCCTACAAATTCTAGCTTA-TTTGTGGGTTTATGAAAATTGG-TT
7009318 TCCATTTGGCATGAAAATGACAATTG
64 TCCATTT-GCATG-AAATGACAATTG
7009344 CTATAACTCATATCATTGTGGCCTACAAATTCTAGCTTATTTGTGGGTTTATGAAAATTGGTTTC
1 CTATAACTCATATCATTGTGGCCTACAAATTCTAGCTTATTTGTGGGTTTATGAAAATTGGTTTC
*
7009409 CATTTGCATGAAATGACTATTG
66 CATTTGCATGAAATGACAATTG
7009431 ACAATCCGAA
Statistics
Matches: 79, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
87 31 0.39
88 16 0.20
89 24 0.30
90 8 0.10
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.41
Consensus pattern (87 bp):
CTATAACTCATATCATTGTGGCCTACAAATTCTAGCTTATTTGTGGGTTTATGAAAATTGGTTTC
CATTTGCATGAAATGACAATTG
Found at i:7009524 original size:239 final size:238
Alignment explanation
Indices: 7009106--7009804 Score: 1077
Period size: 239 Copynumber: 3.0 Consensus size: 238
7009096 CAAAGTATTT
*
7009106 CTATAACTCATATCATTGTGGCTACAATTCTAGCTTATTTTTTGGGTTAGAAAATTGGTTTTCCA
1 CTATAACTCATATCATTGTGGCTACAATTCTAGCTTATTTTGTGGGTTAGAAAATTGGTTTTCCA
7009171 TTTGGCATGAAAATGACTATTGACAACCGAACTAGAAGACTTTTTTTTTATTTCCATCTTTTAAT
66 TTTGGCATGAAAATGACTATTGACAACCGAACTAGAAGACTTTTTTTTTATTTCCATCTTTTAAT
7009236 TGGAAAATGAGCAAAGTATTTCTATAACTTATATCATTGTGGCTACAATTCTAGCTTATTTTTTG
131 TGGAAAATGAGCAAAGTATTTCTATAACTTATATCATTGTGGCTACAATTCTAGCTTATTTTTTG
7009301 GGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACAATTG
196 GGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACAATTG
7009344 CTATAACTCATATCATTGTGGCCTACAAATTCTAGCTTA-TTTGTGGGTTTATGAAAATTGG-TT
1 CTATAACTCATATCATTGTGG-CTAC-AATTCTAGCTTATTTTGTGGG-TTA-GAAAATTGGTTT
7009407 TCCATTT-GCATG-AAATGACTATTGACAATCCGAACTAGAAGACTTTTTTTTTATTTCCATCTT
62 TCCATTTGGCATGAAAATGACTATTGACAA-CCGAACTAGAAGACTTTTTTTTTATTTCCATCTT
7009470 TTAATTGGAAAATGAGCAAAGTATTTCTATAACTTATATCATTGTGGCTACAATTCTAGCTTATT
126 TTAATTGGAAAATGAGCAAAGTATTTCTATAACTTATATCATTGTGGCTACAATTCTAGCTTATT
*
7009535 TTTTGGGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACTATTG
191 TTTTGGGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACAATTG
* *
7009583 -----A--C--A--A------C--CGA-TCTAGCTTATTTTTTGGGTTAGAAAATTGGTTTTCCA
1 CTATAACTCATATCATTGTGGCTACAATTCTAGCTTATTTTGTGGGTTAGAAAATTGGTTTTCCA
* *
7009628 TTTGGCATGAAAATGACTATTGACAACCGAACTAGAAGACTTCTTTTTTTTTTTTTCTATCTTTT
66 TTTGGCATGAAAATGACTATTGACAACCGAACTAGAAGA---CTTTTTTTTTATTTCCATCTTTT
*
7009693 AATTGGAAAAATGAGCAAAGTATTTCTATAACTCATATCATTGTGGCTACAATTCTAGCTTATTT
128 AATTGG-AAAATGAGCAAAGTATTTCTATAACTTATATCATTGTGGCTACAATTCTAGCTTATTT
*
7009758 TTTGGGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACTATTG
192 TTTGGGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACAATTG
7009805 ACAACCGAAC
Statistics
Matches: 441, Mismatches: 7, Indels: 42
0.90 0.01 0.09
Matches are distributed among these distances:
216 9 0.02
217 21 0.05
218 26 0.06
219 17 0.04
221 28 0.06
222 104 0.24
228 1 0.00
230 1 0.00
232 1 0.00
234 1 0.00
238 37 0.08
239 162 0.37
240 24 0.05
241 9 0.02
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (238 bp):
CTATAACTCATATCATTGTGGCTACAATTCTAGCTTATTTTGTGGGTTAGAAAATTGGTTTTCCA
TTTGGCATGAAAATGACTATTGACAACCGAACTAGAAGACTTTTTTTTTATTTCCATCTTTTAAT
TGGAAAATGAGCAAAGTATTTCTATAACTTATATCATTGTGGCTACAATTCTAGCTTATTTTTTG
GGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACAATTG
Found at i:7009632 original size:67 final size:67
Alignment explanation
Indices: 7009524--7009662 Score: 260
Period size: 67 Copynumber: 2.1 Consensus size: 67
7009514 TGGCTACAAT
*
7009524 TCTAGCTTATTTTTTGGGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAACC
1 TCTAGCTTATTTTTTGGGTTAGAAAATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAACC
7009589 GA
66 GA
7009591 TCTAGCTTATTTTTTGGGTTAGAAAATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAACC
1 TCTAGCTTATTTTTTGGGTTAGAAAATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAACC
7009656 GA
66 GA
*
7009658 ACTAG
1 TCTAG
7009663 AAGACTTCTT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 70 1.00
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (67 bp):
TCTAGCTTATTTTTTGGGTTAGAAAATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAACC
GA
Found at i:7009755 original size:222 final size:217
Alignment explanation
Indices: 7009374--7009817 Score: 750
Period size: 222 Copynumber: 2.0 Consensus size: 217
7009364 GCCTACAAAT
7009374 TCTAGCTTATTTGTGGGTTTATGAAAATTGGTTTCCATTTGCATGAAATGACTATTGACAATCCG
1 TCTAGCTTATTTGTGGGTTTATGAAAATTGGTTTCCATTTGCATGAAATGACTATTGACAATCCG
7009439 AACTAGAAGACTTTTTTTTTATTTCCATCTTTTAATTGGAAAATGAGCAAAGTATTTCTATAACT
66 AACTAGAAGACTTTTTTTTTATTTCCATCTTTTAATTGGAAAATGAGCAAAGTATTTCTATAACT
*
7009504 TATATCATTGTGGCTACAATTCTAGCTTATTTTTTGGGTTAGAAGATTGGTTTTCCATTTGGCAT
131 CATATCATTGTGGCTACAATTCTAGCTTATTTTTTGGGTTAGAAGATTGGTTTTCCATTTGGCAT
7009569 GAAAATGACTATTGACAACCGA
196 GAAAATGACTATTGACAACCGA
*
7009591 TCTAGCTTATTTTTTGGG-TTA-GAAAATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAA
1 TCTAGCTTA-TTTGTGGGTTTATGAAAATTGG-TTTCCATTT-GCATG-AAATGACTATTGACAA
* *
7009654 -CCGAACTAGAAGACTTCTTTTTTTTTTTTTCTATCTTTTAATTGGAAAAATGAGCAAAGTATTT
62 TCCGAACTAGAAGA---CTTTTTTTTTATTTCCATCTTTTAATTGG-AAAATGAGCAAAGTATTT
7009718 CTATAACTCATATCATTGTGGCTACAATTCTAGCTTATTTTTTGGGTTAGAAGATTGGTTTTCCA
123 CTATAACTCATATCATTGTGGCTACAATTCTAGCTTATTTTTTGGGTTAGAAGATTGGTTTTCCA
7009783 TTTGGCATGAAAATGACTATTGACAACCGA
188 TTTGGCATGAAAATGACTATTGACAACCGA
*
7009813 ACTAG
1 TCTAG
7009818 AAGACTTCTT
Statistics
Matches: 214, Mismatches: 5, Indels: 11
0.93 0.02 0.05
Matches are distributed among these distances:
216 9 0.04
217 21 0.10
218 25 0.12
219 16 0.07
221 27 0.13
222 116 0.54
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (217 bp):
TCTAGCTTATTTGTGGGTTTATGAAAATTGGTTTCCATTTGCATGAAATGACTATTGACAATCCG
AACTAGAAGACTTTTTTTTTATTTCCATCTTTTAATTGGAAAATGAGCAAAGTATTTCTATAACT
CATATCATTGTGGCTACAATTCTAGCTTATTTTTTGGGTTAGAAGATTGGTTTTCCATTTGGCAT
GAAAATGACTATTGACAACCGA
Found at i:7009903 original size:154 final size:155
Alignment explanation
Indices: 7009591--7009965 Score: 709
Period size: 154 Copynumber: 2.4 Consensus size: 155
7009581 TGACAACCGA
*
7009591 TCTAGCTTATTTTTTGGGTTAGAAAATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAACC
1 TCTAGCTTATTTTTTGGGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAACC
7009656 GAACTAGAAGACTTCTTTTTTTTTTTTTCTATCTTTTAATTGGAAAAATGAGCAAAGTATTTCTA
66 GAACTAGAAGACTTCTTTTTTTTTTTTTCTATCTTTTAATTGGAAAAATGAGCAAAGTATTTCTA
7009721 TAACTCATATCATTGTGGCTACAAT
131 TAACTCATATCATTGTGGCTACAAT
7009746 TCTAGCTTATTTTTTGGGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAACC
1 TCTAGCTTATTTTTTGGGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAACC
*
7009811 GAACTAGAAGACTTCTTTTTTTTTTTTTCTATCTTTTAATTGG-AAAATGATCAAAGTATTTCTA
66 GAACTAGAAGACTTCTTTTTTTTTTTTTCTATCTTTTAATTGGAAAAATGAGCAAAGTATTTCTA
7009875 TAACTCATATCATTGTGGCTACAAT
131 TAACTCATATCATTGTGGCTACAAT
7009900 TCTAGCTTATTTTTTGGGTTAG-AGAATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAAC
1 TCTAGCTTATTTTTTGGGTTAGAAG-ATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAAC
7009964 CG
65 CG
7009966 TGTTGGGCTA
Statistics
Matches: 217, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
153 2 0.01
154 108 0.50
155 107 0.49
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.42
Consensus pattern (155 bp):
TCTAGCTTATTTTTTGGGTTAGAAGATTGGTTTTCCATTTGGCATGAAAATGACTATTGACAACC
GAACTAGAAGACTTCTTTTTTTTTTTTTCTATCTTTTAATTGGAAAAATGAGCAAAGTATTTCTA
TAACTCATATCATTGTGGCTACAAT
Found at i:7010523 original size:52 final size:52
Alignment explanation
Indices: 7010442--7010597 Score: 215
Period size: 52 Copynumber: 3.0 Consensus size: 52
7010432 TATAACCATA
* * *
7010442 CAAACTTGCCCATTAAGAATCCCTCTCCTTTTAGAATTCTTCTCTTGTAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGT
* *
7010494 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTATAATTCTTTTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGT
* * * *
7010546 CAAACTTACCTATTAAGAATCCTCTTT-CTCTTGGAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCC-CTTTCCTTTTAGAATTCTTCTCTTGCAAGT
7010598 TTTTTTGTTC
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
52 88 0.96
53 4 0.04
ACGTcount: A:0.25, C:0.24, G:0.09, T:0.42
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGT
Found at i:7010648 original size:22 final size:22
Alignment explanation
Indices: 7010623--7010665 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7010613 GCAATATCTG
*
7010623 ACAAATCTTAAACAAATCTCTA
1 ACAAATCTCAAACAAATCTCTA
7010645 ACAAATCTCAAACAAATCTCT
1 ACAAATCTCAAACAAATCTCT
7010666 TATAGGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (22 bp):
ACAAATCTCAAACAAATCTCTA
Found at i:7010664 original size:11 final size:11
Alignment explanation
Indices: 7010623--7010664 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
7010613 GCAATATCTG
*
7010623 ACAAATCTTAA
1 ACAAATCTCAA
*
7010634 ACAAATCTCTA
1 ACAAATCTCAA
7010645 ACAAATCTCAA
1 ACAAATCTCAA
7010656 ACAAATCTC
1 ACAAATCTC
7010665 TTATAGGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:7011626 original size:52 final size:52
Alignment explanation
Indices: 7011540--7011684 Score: 177
Period size: 52 Copynumber: 2.8 Consensus size: 52
7011530 TATAACCATA
* * * *
7011540 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAGAATTCTTTTCCTGTAAGT
1 CAAACTTGCCTATTAAGAATCTCTTTCCTCTTAGAATTCTTTTCCTGCAAGT
* * *
7011592 TAAACTTGCCTATTAAGAATCTCTTTCCTTTTAGAATTCTTTTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCTCTTTCCTCTTAGAATTCTTTTCCTGCAAGT
* *
7011644 CAAACTTACCTATTAGGAATCCTCTTT-CTCTT-GAAATTCTT
1 CAAACTTGCCTATTAAGAAT-CTCTTTCCTCTTAG-AATTCTT
7011685 CTTTTGCAAG
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
51 1 0.01
52 73 0.91
53 6 0.08
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCTCTTTCCTCTTAGAATTCTTTTCCTGCAAGT
Found at i:7011746 original size:22 final size:22
Alignment explanation
Indices: 7011721--7011763 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7011711 GCAATATCTG
*
7011721 ACAAATC-CTAAATAAATCTCTA
1 ACAAATCTC-AAACAAATCTCTA
7011743 ACAAATCTCAAACAAATCTCT
1 ACAAATCTCAAACAAATCTCT
7011764 TATGAGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (22 bp):
ACAAATCTCAAACAAATCTCTA
Found at i:7011748 original size:11 final size:11
Alignment explanation
Indices: 7011721--7011763 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
7011711 GCAATATCTG
7011721 ACAAATC-CTAA
1 ACAAATCTCT-A
*
7011732 ATAAATCTCTA
1 ACAAATCTCTA
*
7011743 ACAAATCTCAA
1 ACAAATCTCTA
7011754 ACAAATCTCT
1 ACAAATCTCT
7011764 TATGAGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 25 0.93
12 2 0.07
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (11 bp):
ACAAATCTCTA
Found at i:7011979 original size:147 final size:149
Alignment explanation
Indices: 7011792--7012151 Score: 510
Period size: 147 Copynumber: 2.4 Consensus size: 149
7011782 ATTCCCAACA
* * *
7011792 AACCGAACTAG-AAGACTTTTTTTTTCCATCTTTTAATTGGAAAATGAGCAAAGTATTTCTATAA
1 AACCGAACCAGTAAGACTTTTTTTTTCTATCTTTTAATTGGAAAATGAGCAAAGTATTTTTATAA
* *
7011856 CTCATATCATTGTGGCTCCAATTCTAGCTTA-TTTTTTGGGTTAGAAAATTGGTTTTCCAATTGG
66 CTCATATCATCGTGGCTACAATTCTAGCTTATTTTTTTGGGTTAGAAAATTGGTTTTCCAATTGG
*
7011920 CTTGAAAATGACAATTGAC
131 CATGAAAATGACAATTGAC
* *
7011939 AATCGAACCA-TAAGACTTTTTTTTTCTATATTTTAATTGGAAAATGAGCAAAGTATTTTTATAA
1 AACCGAACCAGTAAGACTTTTTTTTTCTATCTTTTAATTGGAAAATGAGCAAAGTATTTTTATAA
*
7012003 CTCATATCATCGTGGCTACAATTCTAGCTTATTTTTTTGGGTTAGAAAATTGGTTTTCCATTTGG
66 CTCATATCATCGTGGCTACAATTCTAGCTTATTTTTTTGGGTTAGAAAATTGGTTTTCCAATTGG
* *
7012068 CATGCAAATGACCATTGAC
131 CATGAAAATGACAATTGAC
* * ***** * *
7012087 AACCGATCGAGTTTTTTTTTTTTTGTTCTATCTATTAATTGGGAAATGAGCAAAGTATTTTTATA
1 AACCGAACCAGTAAGACTTTTTTT-TTCTATCTTTTAATTGGAAAATGAGCAAAGTATTTTTATA
7012152 GTGCTAGTCC
Statistics
Matches: 187, Mismatches: 22, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
147 87 0.47
148 55 0.29
149 8 0.04
150 37 0.20
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (149 bp):
AACCGAACCAGTAAGACTTTTTTTTTCTATCTTTTAATTGGAAAATGAGCAAAGTATTTTTATAA
CTCATATCATCGTGGCTACAATTCTAGCTTATTTTTTTGGGTTAGAAAATTGGTTTTCCAATTGG
CATGAAAATGACAATTGAC
Found at i:7016119 original size:18 final size:18
Alignment explanation
Indices: 7016075--7016126 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
7016065 CTTTATTTTA
7016075 TTTTATTTTAATTTTAAT
1 TTTTATTTTAATTTTAAT
* * *
7016093 TTTAATTTTGATTTTGAT
1 TTTTATTTTAATTTTAAT
* *
7016111 TTTTCTTTTCATTTTA
1 TTTTATTTTAATTTTA
7016127 GTTAATGATA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (18 bp):
TTTTATTTTAATTTTAAT
Found at i:7016125 original size:6 final size:6
Alignment explanation
Indices: 7016069--7016113 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
7016059 TATCGGCTTT
* *
7016069 ATTTT- ATTTT- ATTTTA ATTTTA ATTTTA ATTTTG ATTTTG ATTTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTT
7016114 TCTTTTCATT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
5 10 0.26
6 28 0.74
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (6 bp):
ATTTTA
Found at i:7017540 original size:53 final size:50
Alignment explanation
Indices: 7017382--7017578 Score: 187
Period size: 50 Copynumber: 3.8 Consensus size: 50
7017372 CTTTCTTTCC
** *
7017382 AAAAAAAATGAATTTCTAAATAGGCTCAAATGGTGAAAAATTTAAAAATT
1 AAAAAAAAAAAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAAAAATT
* * * * * * *
7017432 TAGAAAAAAAAATTTCTAAATTGACCCAAATGGTGAAAAATTTAGAGATA
1 AAAAAAAAAAAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAAAAATT
*
7017482 AAAAAAATAAAAATTTTTTTAAATAGGCCCAAATGGTGAAAAATTTAAAAATT
1 AAAAAAA-AAAAA--TTTCTAAATAGGCCCAAATGGTGAAAAATTTAAAAATT
* * * * * * *
7017535 CAAAAAGAGAATATTTCTAATTTGGCCAAAATGGTAGAATAATT
1 -AAAAAAAAAAAATTTCTAAATAGGCCCAAATGGT-GAAAAATT
7017579 AGATATATTT
Statistics
Matches: 116, Mismatches: 26, Indels: 8
0.77 0.17 0.05
Matches are distributed among these distances:
50 45 0.39
51 23 0.20
52 7 0.06
53 35 0.30
54 6 0.05
ACGTcount: A:0.52, C:0.07, G:0.13, T:0.28
Consensus pattern (50 bp):
AAAAAAAAAAAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAAAAATT
Found at i:7018629 original size:17 final size:17
Alignment explanation
Indices: 7018607--7018659 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
7018597 ACTTCTATAC
7018607 CATTTCATTCTATGCAT
1 CATTTCATTCTATGCAT
7018624 CATTTC---C-AT--AT
1 CATTTCATTCTATGCAT
*
7018635 CATTTCATTTTATGCAT
1 CATTTCATTCTATGCAT
7018652 CATTTCAT
1 CATTTCAT
7018660 GCTCATGTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 12
0.69 0.02 0.29
Matches are distributed among these distances:
11 8 0.28
13 2 0.07
14 1 0.03
15 2 0.07
17 16 0.55
ACGTcount: A:0.25, C:0.23, G:0.04, T:0.49
Consensus pattern (17 bp):
CATTTCATTCTATGCAT
Found at i:7018665 original size:28 final size:28
Alignment explanation
Indices: 7018591--7018657 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
7018581 TGTATGCATC
* * *
7018591 TGCATCACTTCTATACCATTTCATTCTA
1 TGCATCATTTCCATATCATTTCATTCTA
*
7018619 TGCATCATTTCCATATCATTTCATTTTA
1 TGCATCATTTCCATATCATTTCATTCTA
7018647 TGCATCATTTC
1 TGCATCATTTC
7018658 ATGCTCATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.24, C:0.25, G:0.04, T:0.46
Consensus pattern (28 bp):
TGCATCATTTCCATATCATTTCATTCTA
Found at i:7021652 original size:9 final size:9
Alignment explanation
Indices: 7021637--7021711 Score: 64
Period size: 9 Copynumber: 8.0 Consensus size: 9
7021627 CACTAATGAT
7021637 GGAAAAAAA
1 GGAAAAAAA
*
7021646 TGAAAAAGAA
1 GGAAAAA-AA
7021656 -G-AAAAAA
1 GGAAAAAAA
*
7021663 TGAAAAAAA
1 GGAAAAAAA
7021672 GGAAAAAAA
1 GGAAAAAAA
*
7021681 AGAAGGAAAAA
1 GGAA--AAAAA
7021692 GGAAAAAAAGA
1 GG-AAAAAA-A
7021703 GGAAAAAAA
1 GGAAAAAAA
7021712 AGAGAAAGAA
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
7 2 0.04
8 5 0.09
9 25 0.45
10 12 0.22
11 9 0.16
12 2 0.04
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (9 bp):
GGAAAAAAA
Found at i:7021661 original size:10 final size:10
Alignment explanation
Indices: 7021648--7021731 Score: 70
Period size: 10 Copynumber: 8.8 Consensus size: 10
7021638 GAAAAAAATG
7021648 AAAAAGAAGA
1 AAAAAGAAGA
7021658 AAAAATGAA-A
1 AAAAA-GAAGA
*
7021668 AAAAGGAA-A
1 AAAAAGAAGA
*
7021677 AAAAAGAAGG
1 AAAAAGAAGA
*
7021687 AAAAAGGA-A
1 AAAAAGAAGA
*
7021696 AAAAAGAGGA
1 AAAAAGAAGA
7021706 AAAAA-AAG-
1 AAAAAGAAGA
* *
7021714 AGAAAGAAAA
1 AAAAAGAAGA
7021724 AAAAAGAA
1 AAAAAGAA
7021732 AGAATGGAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
8 4 0.07
9 21 0.36
10 30 0.52
11 3 0.05
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.01
Consensus pattern (10 bp):
AAAAAGAAGA
Found at i:7021661 original size:18 final size:17
Alignment explanation
Indices: 7021638--7021732 Score: 67
Period size: 16 Copynumber: 5.7 Consensus size: 17
7021628 ACTAATGATG
7021638 GAAAAAAATGAAAAAGAA
1 GAAAAAAA-GAAAAAGAA
*
7021656 GAAAAAATGAAAAA-AA
1 GAAAAAAAGAAAAAGAA
* *
7021672 GGAAAAAA-AAGAAG--
1 GAAAAAAAGAAAAAGAA
*
7021686 GAAAAAGGAA-AAAAAGAG
1 GAAAAA--AAGAAAAAGAA
*
7021704 GAAAAAAAAGAGAAAGAA
1 G-AAAAAAAGAAAAAGAA
7021722 -AAAAAAAGAAA
1 GAAAAAAAGAAA
7021733 GAATGGAAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
14 5 0.08
15 4 0.07
16 25 0.41
17 8 0.13
18 14 0.23
19 5 0.08
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (17 bp):
GAAAAAAAGAAAAAGAA
Found at i:7021662 original size:17 final size:17
Alignment explanation
Indices: 7021640--7021699 Score: 68
Period size: 17 Copynumber: 3.4 Consensus size: 17
7021630 TAATGATGGA
7021640 AAAAAATGAAAAAGAA-G
1 AAAAAATGAAAAA-AAGG
7021657 AAAAAATGAAAAAAAGG
1 AAAAAATGAAAAAAAGG
*
7021674 AAAAAAAAGAAGGAAAAAGG
1 -AAAAAATGAA--AAAAAGG
7021694 AAAAAA
1 AAAAAA
7021700 AGAGGAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
16 2 0.05
17 14 0.37
18 9 0.24
19 6 0.16
20 7 0.18
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.03
Consensus pattern (17 bp):
AAAAAATGAAAAAAAGG
Found at i:7021671 original size:20 final size:18
Alignment explanation
Indices: 7021638--7021735 Score: 74
Period size: 20 Copynumber: 5.2 Consensus size: 18
7021628 ACTAATGATG
* *
7021638 GAAAAAAATGAAAAAGAA
1 GAAAAAAAAGAAAAAAAA
* *
7021656 G-AAAAAATGAAAAAAAG
1 GAAAAAAAAGAAAAAAAA
*
7021673 GAAAAAAAAGAAGGAAAAAG
1 GAAAAAAAAGAA--AAAAAA
7021693 GAAAAAAAGAGGAAAAAAAA
1 GAAAAAAA-A-GAAAAAAAA
7021713 GAGAAAGAAAA-AAAAAGAAA
1 GA-AAA-AAAAGAAAAA-AAA
7021733 GAA
1 GAA
7021736 TGGAAAAAAG
Statistics
Matches: 68, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
17 15 0.22
18 10 0.15
19 6 0.09
20 26 0.38
21 5 0.07
22 6 0.09
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (18 bp):
GAAAAAAAAGAAAAAAAA
Found at i:7021671 original size:29 final size:28
Alignment explanation
Indices: 7021648--7021732 Score: 86
Period size: 29 Copynumber: 3.0 Consensus size: 28
7021638 GAAAAAAATG
*
7021648 AAAAAGAAGAAAAAATGAAAAAAAGGAAA
1 AAAAAGAAGAAAAAAGGAAAAAAA-GAAA
*
7021677 AAAAAGAAGGAAAAAGGAAAAAAAGAGGAA
1 AAAAAGAAGAAAAAAGGAAAAAAAGA--AA
*
7021707 AAAAA-AGAGAAAGAA--AAAAAAAGAAA
1 AAAAAGA-AGAAAAAAGGAAAAAAAGAAA
7021733 GAATGGAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
26 2 0.04
28 11 0.22
29 23 0.47
30 13 0.27
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.01
Consensus pattern (28 bp):
AAAAAGAAGAAAAAAGGAAAAAAAGAAA
Found at i:7023115 original size:20 final size:21
Alignment explanation
Indices: 7023092--7023134 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
7023082 GTCGAATGTA
7023092 AATCTTCGAACT-CAAATGAG
1 AATCTTCGAACTCCAAATGAG
* *
7023112 AATCTTTGAATTCCAAATGAG
1 AATCTTCGAACTCCAAATGAG
7023133 AA
1 AA
7023135 CTTTGAGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (21 bp):
AATCTTCGAACTCCAAATGAG
Found at i:7023180 original size:77 final size:79
Alignment explanation
Indices: 7023026--7023197 Score: 258
Period size: 77 Copynumber: 2.2 Consensus size: 79
7023016 TTGAGTTCTT
* * *
7023026 AAATGAGAATATTTGAATTTCAAATGATAATTTTTGAGGTGTGAAACTCAAAATTTGTCGAATGT
1 AAATGAGAATATTTGAATTCCAAATGAGAATCTTTGAGGTGTGAAACTCAAAATTTGTCGAATGT
7023091 AAATCTTCGAACTC
66 AAATCTTCGAACTC
* *
7023105 AAATGAGAATCTTTGAATTCCAAATGAGAA-CTTTGAGGTGTGAACCT-AAAATTTGTCGAATGT
1 AAATGAGAATATTTGAATTCCAAATGAGAATCTTTGAGGTGTGAAACTCAAAATTTGTCGAATGT
* *
7023168 GAATCTTTGAACTC
66 AAATCTTCGAACTC
*
7023182 AAATGAGAATTTTTGA
1 AAATGAGAATATTTGA
7023198 GGAGTGAAAC
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
77 43 0.51
78 15 0.18
79 27 0.32
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.34
Consensus pattern (79 bp):
AAATGAGAATATTTGAATTCCAAATGAGAATCTTTGAGGTGTGAAACTCAAAATTTGTCGAATGT
AAATCTTCGAACTC
Found at i:7023199 original size:57 final size:58
Alignment explanation
Indices: 7023103--7023256 Score: 186
Period size: 59 Copynumber: 2.6 Consensus size: 58
7023093 ATCTTCGAAC
* * *
7023103 TCAAATGAGAATCTTTGAATTCCAAATGAGAACTTTGAGGTGTG-AA-CCTAAAATTTG
1 TCAAATGTGAATCTTTGAACT-CAAATGAGAACTTTGAGGAGTGAAACCCTAAAATTTG
* * *
7023160 TCGAATGTGAATCTTTGAACTCAAATGAGAATTTTTGAGGAGTGAAACCCTAAGATTTG
1 TCAAATGTGAATCTTTGAACTCAAATGAGAA-CTTTGAGGAGTGAAACCCTAAAATTTG
** *
7023219 TCAAATGTGAGCCTTTGGACTCAAATGAGAAGCTTTGA
1 TCAAATGTGAATCTTTGAACTCAAATGAGAA-CTTTGA
7023257 ACTTTTGGAT
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
56 10 0.12
57 28 0.34
58 2 0.02
59 42 0.51
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (58 bp):
TCAAATGTGAATCTTTGAACTCAAATGAGAACTTTGAGGAGTGAAACCCTAAAATTTG
Found at i:7023648 original size:42 final size:41
Alignment explanation
Indices: 7023503--7023724 Score: 288
Period size: 41 Copynumber: 5.4 Consensus size: 41
7023493 ATGATCGTTA
* * * * *
7023503 AGGAGC-ATTTATTTTCCAAAATTTTGGTGCTTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAG
* *
7023543 AGGAGCAATTTATTTTTCAAAGTTGTGGTGCCTC-GTTTAA
1 AGGAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAG
*
7023583 AGGAGCAATTTATTTTTCAAAAGTTATGGTGCCTCTATTTAG
1 AGGAGCAATTTATTTTTC-AAAGTTGTGGTGCCTCTATTTAG
*
7023625 AGGAGCAATTTATTTTTTCAAAGTTGTGGTGCCTCCATTTAG
1 AGGAGCAATTTA-TTTTTCAAAGTTGTGGTGCCTCTATTTAG
** *
7023667 AGGAGCTTTTTATTTTCCAAAGTTGTGGTGCCTCTATTTAG
1 AGGAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAG
*
7023708 AGAAGC-ATTTATTTTTC
1 AGGAGCAATTTATTTTTC
7023725 TCAAAGTCAT
Statistics
Matches: 161, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
40 38 0.24
41 70 0.43
42 47 0.29
43 6 0.04
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.42
Consensus pattern (41 bp):
AGGAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAG
Found at i:7023689 original size:83 final size:82
Alignment explanation
Indices: 7023502--7023731 Score: 313
Period size: 83 Copynumber: 2.8 Consensus size: 82
7023492 CATGATCGTT
* * * *
7023502 AAGGAGC-ATTTATTTTCCAAAATTTTGGTGCTTCTGTTTAGAGGAGCAATTTA-TTTTTCAAAG
1 AAGGAGCAATTTATTTTCCAAAGTTATGGTGCCTCTATTTAGAGGAGCAATTTATTTTTTCAAAG
*
7023565 TTGTGGTGCCTCGTTTA
66 TTGTGGTGCCTCATTTA
*
7023582 AAGGAGCAATTTATTTTTCAAAAGTTATGGTGCCTCTATTTAGAGGAGCAATTTATTTTTTCAAA
1 AAGGAGCAATTTA-TTTTCCAAAGTTATGGTGCCTCTATTTAGAGGAGCAATTTATTTTTTCAAA
7023647 GTTGTGGTGCCTCCATTTA
65 GTTGTGGTGCCT-CATTTA
* ** * *
7023666 GAGGAGCTTTTTATTTTCCAAAGTTGTGGTGCCTCTATTTAGAGAAGC-ATTTATTTTTCTCAAA
1 AAGGAGCAATTTATTTTCCAAAGTTATGGTGCCTCTATTTAGAGGAGCAATTTATTTTT-TCAAA
7023730 GT
65 GT
7023732 CATTGAGCCT
Statistics
Matches: 133, Mismatches: 12, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
80 7 0.05
81 5 0.04
82 46 0.35
83 60 0.45
84 15 0.11
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (82 bp):
AAGGAGCAATTTATTTTCCAAAGTTATGGTGCCTCTATTTAGAGGAGCAATTTATTTTTTCAAAG
TTGTGGTGCCTCATTTA
Found at i:7023742 original size:83 final size:83
Alignment explanation
Indices: 7023510--7023758 Score: 306
Period size: 83 Copynumber: 3.0 Consensus size: 83
7023500 TTAAGGAGCA
* * * *
7023510 TTTATTTTCCAAAATTTTGGTGCTTCTGTTTAGAGGAGCAATTTA-TTTTTCAAAGTTGTGGTGC
1 TTTATTTTCCAAAGTTATGGTGCCTCTATTTAGAGGAGCAATTTATTTTTTCAAAGTTGTGGTGC
* **
7023574 CT-CGTTTAAAGGAGCAA
66 CTCCGTTTAGAGGAGCTT
*
7023591 TTTATTTTTCAAAAGTTATGGTGCCTCTATTTAGAGGAGCAATTTATTTTTTCAAAGTTGTGGTG
1 TTTA-TTTTCCAAAGTTATGGTGCCTCTATTTAGAGGAGCAATTTATTTTTTCAAAGTTGTGGTG
*
7023656 CCTCCATTTAGAGGAGCTT
65 CCTCCGTTTAGAGGAGCTT
* * ** * *
7023675 TTTATTTTCCAAAGTTGTGGTGCCTCTATTTAGAGAAGC-ATTTATTTTTCTCAAAGTCATTGAG
1 TTTATTTTCCAAAGTTATGGTGCCTCTATTTAGAGGAGCAATTTATTTTT-TCAAAGTTGTGGTG
* *
7023739 CCTCTGTTTAGAGTAGCTT
65 CCTCCGTTTAGAGGAGCTT
7023758 T
1 T
7023759 ATTTACTTTT
Statistics
Matches: 145, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
81 4 0.03
82 46 0.32
83 80 0.55
84 15 0.10
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.43
Consensus pattern (83 bp):
TTTATTTTCCAAAGTTATGGTGCCTCTATTTAGAGGAGCAATTTATTTTTTCAAAGTTGTGGTGC
CTCCGTTTAGAGGAGCTT
Found at i:7023760 original size:41 final size:41
Alignment explanation
Indices: 7023503--7023762 Score: 269
Period size: 42 Copynumber: 6.3 Consensus size: 41
7023493 ATGATCGTTA
* * * *
7023503 AGGAGCATTTA-TTTTCCAAAATTTTGGTGCTTCTGTTTAG
1 AGGAGCATTTATTTTTCCAAAGTTATGGTGCCTCTATTTAG
* * *
7023543 AGGAGCAATTTATTTTT-CAAAGTTGTGGTGCCTC-GTTTAA
1 AGGAGC-ATTTATTTTTCCAAAGTTATGGTGCCTCTATTTAG
*
7023583 AGGAGCAATTTATTTTTCAAAAGTTATGGTGCCTCTATTTAG
1 AGGAGC-ATTTATTTTTCCAAAGTTATGGTGCCTCTATTTAG
* * *
7023625 AGGAGCAATTTATTTTTTCAAAGTTGTGGTGCCTCCATTTAG
1 AGGAGC-ATTTATTTTTCCAAAGTTATGGTGCCTCTATTTAG
* *
7023667 AGGAGC-TTTTTATTTTCCAAAGTTGTGGTGCCTCTATTTAG
1 AGGAGCATTTAT-TTTTCCAAAGTTATGGTGCCTCTATTTAG
* * * * *
7023708 AGAAGCATTTATTTTTCTCAAAGTCATTGAGCCTCTGTTTAG
1 AGGAGCATTTATTTTTC-CAAAGTTATGGTGCCTCTATTTAG
*
7023750 AGTAGC-TTTATTT
1 AGGAGCATTTATTT
7023763 ACTTTTTCAA
Statistics
Matches: 190, Mismatches: 23, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
40 32 0.17
41 78 0.41
42 80 0.42
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.42
Consensus pattern (41 bp):
AGGAGCATTTATTTTTCCAAAGTTATGGTGCCTCTATTTAG
Found at i:7024648 original size:20 final size:22
Alignment explanation
Indices: 7024611--7024653 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
7024601 TTAGAGAGAG
7024611 AAAGAGAAAAGAAGAGGA-AAA
1 AAAGAGAAAAGAAGAGGAGAAA
* *
7024632 AAAGAGAAAGGGA-AGGAGAAA
1 AAAGAGAAAAGAAGAGGAGAAA
7024653 A
1 A
7024654 TTGAGGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (22 bp):
AAAGAGAAAAGAAGAGGAGAAA
Found at i:7024932 original size:4 final size:4
Alignment explanation
Indices: 7024925--7024962 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
7024915 TTTTGGTAAT
* *
7024925 TTTA TTTA TTTA TTTA TTTA -TTA TGTG TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
7024963 TTGGAGTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:7025195 original size:7 final size:7
Alignment explanation
Indices: 7025177--7025227 Score: 84
Period size: 7 Copynumber: 7.0 Consensus size: 7
7025167 TTCAAACAAA
7025177 AAAAATT
1 AAAAATT
7025184 AAAAAATT
1 -AAAAATT
7025192 AAAAAATT
1 -AAAAATT
7025200 AAAAATT
1 AAAAATT
7025207 AAAAATT
1 AAAAATT
7025214 AAAAATT
1 AAAAATT
7025221 AAAAATT
1 AAAAATT
7025228 TGGGTTAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
7 28 0.65
8 15 0.35
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAAATT
Found at i:7025553 original size:53 final size:53
Alignment explanation
Indices: 7025392--7025559 Score: 183
Period size: 53 Copynumber: 3.1 Consensus size: 53
7025382 TTACTTTCTT
* * *
7025392 TAAAATTTTTTTTCTAAATAAGCCTAAATGGTGAAAAATTTAGAAATTTAGAAAA
1 TAAAAATTTTTTT-TAAATAGGCCCAAATGGTGAAAAATTTAGAAATTTA-AAAA
* * * * * * * **
7025447 AAAGAAAATATTTCTAAATTGACCCAAATGGTGAAAAATTTAGAGATAAAAAAA
1 TAA-AAATTTTTTTTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTTAAAAA
*
7025501 TAAAAATTTTTTTTAAATAGGCCCAAATGGTGAAAAGTTTAGAAATTTAAAAA
1 TAAAAATTTTTTTTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTTAAAAA
*
7025554 GAAAAA
1 TAAAAA
7025560 ATATTTCTAA
Statistics
Matches: 89, Mismatches: 23, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
53 46 0.52
54 6 0.07
55 31 0.35
56 6 0.07
ACGTcount: A:0.51, C:0.06, G:0.12, T:0.30
Consensus pattern (53 bp):
TAAAAATTTTTTTTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTTAAAAA
Found at i:7027682 original size:35 final size:35
Alignment explanation
Indices: 7027615--7027682 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
7027605 TCCATATTTT
* * *
7027615 TTTGGCTATTCCATGAGACCGAACTTGTGTATATC
1 TTTGGCTATTCCATGAGACCAAACTCGGGTATATC
7027650 TTTGGCTATTCCATGAGACCAAACTCGGGTATA
1 TTTGGCTATTCCATGAGACCAAACTCGGGTATA
7027683 ATATCATTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (35 bp):
TTTGGCTATTCCATGAGACCAAACTCGGGTATATC
Found at i:7029918 original size:2 final size:2
Alignment explanation
Indices: 7029913--7029937 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7029903 TAGTGTATTT
7029913 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7029938 GATAGCGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7030702 original size:24 final size:23
Alignment explanation
Indices: 7030675--7030739 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 23
7030665 AACCCCTCAA
*
7030675 GAAAAAGGATAAGTTTTAATCTAT
1 GAAAAAGGATAA-TTTTAATCCAT
* *
7030699 GAAAAAAG-TCATTTTTAATCCAT
1 GAAAAAGGAT-AATTTTAATCCAT
7030722 GAAAAAAGGATAATTTTA
1 G-AAAAAGGATAATTTTA
7030740 GCATAATTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
23 12 0.36
24 20 0.61
25 1 0.03
ACGTcount: A:0.48, C:0.06, G:0.14, T:0.32
Consensus pattern (23 bp):
GAAAAAGGATAATTTTAATCCAT
Found at i:7032065 original size:2 final size:2
Alignment explanation
Indices: 7032053--7032086 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
7032043 TCTTGTACTC
*
7032053 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7032087 TCAAGATGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7033883 original size:15 final size:15
Alignment explanation
Indices: 7033865--7033917 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
7033855 AGTTTTGAGG
7033865 TTTAGGGTTTTGGAT
1 TTTAGGGTTTTGGAT
*
7033880 TTTAAGGTTTTGGAT
1 TTTAGGGTTTTGGAT
* *
7033895 TTTTGAG-TTT-GAT
1 TTTAGGGTTTTGGAT
7033908 TTTAGGGTTT
1 TTTAGGGTTT
7033918 CGAGTTTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 8 0.26
14 5 0.16
15 18 0.58
ACGTcount: A:0.15, C:0.00, G:0.28, T:0.57
Consensus pattern (15 bp):
TTTAGGGTTTTGGAT
Found at i:7033922 original size:20 final size:20
Alignment explanation
Indices: 7033899--7033937 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7033889 TTGGATTTTT
*
7033899 GAGTTTGATTTTAGGGTTTC
1 GAGTTTAATTTTAGGGTTTC
7033919 GAGTTTAATTTTAGGGTTT
1 GAGTTTAATTTTAGGGTTT
7033938 AGGGTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.03, G:0.28, T:0.51
Consensus pattern (20 bp):
GAGTTTAATTTTAGGGTTTC
Found at i:7033944 original size:20 final size:20
Alignment explanation
Indices: 7033899--7033944 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7033889 TTGGATTTTT
* *
7033899 GAGTTTGATTTTAGGGTTTC
1 GAGTTTAATTTTAGGGTTTA
7033919 GAGTTTAATTTTAGGGTTTA
1 GAGTTTAATTTTAGGGTTTA
*
7033939 GGGTTT
1 GAGTTT
7033945 TGAAAGTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.17, C:0.02, G:0.30, T:0.50
Consensus pattern (20 bp):
GAGTTTAATTTTAGGGTTTA
Found at i:7034195 original size:22 final size:22
Alignment explanation
Indices: 7034170--7034215 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
7034160 ATATTTCTCT
*
7034170 TTTTATTATTATTAATTATTAA
1 TTTTATTATTATTAATTAATAA
*
7034192 TTTTATTATTATTATTTAATAA
1 TTTTATTATTATTAATTAATAA
7034214 TT
1 TT
7034216 CTCTAACATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTTATTATTATTAATTAATAA
Found at i:7034520 original size:10 final size:10
Alignment explanation
Indices: 7034505--7034538 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
7034495 AATTTAGATT
7034505 TTATTTATTA
1 TTATTTATTA
*
7034515 TTATTTATTG
1 TTATTTATTA
*
7034525 TTATTTACTA
1 TTATTTATTA
7034535 TTAT
1 TTAT
7034539 CGTTAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (10 bp):
TTATTTATTA
Found at i:7035789 original size:25 final size:24
Alignment explanation
Indices: 7035760--7035807 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
7035750 AATTTTTAAT
7035760 TAATTAACTA-ATTATTATTAATATC
1 TAATTAA-TACATTATT-TTAATATC
*
7035785 TAATTAATACTTTATTTTAATAT
1 TAATTAATACATTATTTTAATAT
7035808 TAAATTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (24 bp):
TAATTAATACATTATTTTAATATC
Found at i:7036316 original size:84 final size:84
Alignment explanation
Indices: 7036161--7036425 Score: 254
Period size: 84 Copynumber: 3.2 Consensus size: 84
7036151 TCATGCCCAA
* * * * ** *
7036161 AGGTTTTA-AAATCTTGAAACTAAAATAGATTCAGCTTGAAAGACTTACAAATTTTGCTTGGATG
1 AGGTCTTACAAATCTTGAAAATAAAATAGATTCAGCTTGAAAGACTTACGAATCTTGCTCAGAGG
*
7036225 ACATAGAGATTATGCATGA-
66 ACATAGAGATTATGC-TCAG
* * * * *
7036244 ATGG-CTTATAAATCTTGAAAATAAAATAAATTCAGCTCGAAAGACTTGCGAATCTTACTCAGAG
1 A-GGTCTTACAAATCTTGAAAATAAAATAGATTCAGCTTGAAAGACTTACGAATCTTGCTCAGAG
* * *
7036308 GACTTAGAGGTTACGCTCAG
65 GACATAGAGATTATGCTCAG
* * *
7036328 AGGTTTTACAAATC-T-AAAATCTAAAATAGATTCAGCTTG-AAGACTTACGAATCCTGCCCAGA
1 AGGTCTTACAAATCTTGAAAA--TAAAATAGATTCAGCTTGAAAGACTTACGAATCTTGCTCAGA
* *
7036390 GGACATAGAGATTATGCTTAA
64 GGACATAGAGATTATGCTCAG
*
7036411 AGGTTTTACAAATCT
1 AGGTCTTACAAATCT
7036426 CAAAATTTTT
Statistics
Matches: 147, Mismatches: 28, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
82 4 0.03
83 58 0.39
84 85 0.58
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (84 bp):
AGGTCTTACAAATCTTGAAAATAAAATAGATTCAGCTTGAAAGACTTACGAATCTTGCTCAGAGG
ACATAGAGATTATGCTCAG
Found at i:7036399 original size:83 final size:85
Alignment explanation
Indices: 7036265--7036431 Score: 221
Period size: 83 Copynumber: 2.0 Consensus size: 85
7036255 ATCTTGAAAA
* * * * * *
7036265 TAAAATAAATTCAGCTCGAAAGACTTGCGAATCTTACTCAGAGGACTTAGAGGTTACGCTCAGAG
1 TAAAATAAATTCAGCTCGAAAGACTTACGAATCCTACCCAGAGGACATAGAGATTACGCTCAAAG
7036330 GTTTTACAAATCT-AAAATC
66 GTTTTACAAATCTCAAAATC
* * * * *
7036349 TAAAATAGATTCAGCTTG-AAGACTTACGAATCCTGCCCAGAGGACATAGAGATTATGCTTAAAG
1 TAAAATAAATTCAGCTCGAAAGACTTACGAATCCTACCCAGAGGACATAGAGATTACGCTCAAAG
7036413 GTTTTACAAATCTCAAAAT
66 GTTTTACAAATCTCAAAAT
7036432 TTTTGAACAC
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
83 50 0.70
84 21 0.30
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (85 bp):
TAAAATAAATTCAGCTCGAAAGACTTACGAATCCTACCCAGAGGACATAGAGATTACGCTCAAAG
GTTTTACAAATCTCAAAATC
Found at i:7036583 original size:104 final size:104
Alignment explanation
Indices: 7036398--7036606 Score: 256
Period size: 104 Copynumber: 2.0 Consensus size: 104
7036388 GAGGACATAG
* * * * *
7036398 AGATTATGCTTAAAGGTTTTACAAATCTCAAAATTTTTGAACACTCCTCGTTTCATAGGCATTAA
1 AGATCATGCTTAAAGGTCTTACAAATCTCAAAATCTTTGAACACTCCTCGTATCAAAGGCATTAA
* *
7036463 AACTTTAAAAATTTAAAATGTTTTGCTTGAAGATCTTAC
66 AACTTTAAAAATTTAAAATATTTTGCCTGAAGATCTTAC
* * * *** * *
7036502 AGATCATGCTTGAATGTCTTACAAATCTCAACATCTTTGAGTGCTCTTCGTATCAAAGGCATTGA
1 AGATCATGCTTAAAGGTCTTACAAATCTCAAAATCTTTGAACACTCCTCGTATCAAAGGCATTAA
* * *
7036567 AATTTTAAAAATTTAAAATATTTTGCCTGGAGGTCTTAC
66 AACTTTAAAAATTTAAAATATTTTGCCTGAAGATCTTAC
7036606 A
1 A
7036607 AATTATGCCA
Statistics
Matches: 87, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
104 87 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.37
Consensus pattern (104 bp):
AGATCATGCTTAAAGGTCTTACAAATCTCAAAATCTTTGAACACTCCTCGTATCAAAGGCATTAA
AACTTTAAAAATTTAAAATATTTTGCCTGAAGATCTTAC
Found at i:7036615 original size:22 final size:21
Alignment explanation
Indices: 7036590--7036677 Score: 72
Period size: 22 Copynumber: 4.0 Consensus size: 21
7036580 TAAAATATTT
7036590 TGCCTGGAGGTCTTACAAATTA
1 TGCCTGGAGGTCTTA-AAATTA
** *
7036612 TGCC-AAAGGACTTAGAAATTA
1 TGCCTGGAGGTCTTA-AAATTA
*
7036633 TGCCCGGAGGTCTTTAAAAATTA
1 TGCCTGGAGGTC-TT-AAAATTA
7036656 TG-CTCGGAGGTCTTGAAAATTA
1 TGCCT-GGAGGTCTT-AAAATTA
7036678 CGATCGAGGT
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
21 17 0.32
22 18 0.34
23 17 0.32
24 1 0.02
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (21 bp):
TGCCTGGAGGTCTTAAAATTA
Found at i:7036657 original size:23 final size:23
Alignment explanation
Indices: 7036578--7036674 Score: 83
Period size: 23 Copynumber: 4.3 Consensus size: 23
7036568 ATTTTAAAAA
* *
7036578 TTTAAAATATTTTGCCTGGAGGTC
1 TTTAAAA-ATTATGCCCGGAGGTC
* ** *
7036602 -TTACAAATTATG-CCAAAGGAC
1 TTTAAAAATTATGCCCGGAGGTC
*
7036623 -TTAGAAATTATGCCCGGAGGTC
1 TTTAAAAATTATGCCCGGAGGTC
*
7036645 TTTAAAAATTATGCTCGGAGGTC
1 TTTAAAAATTATGCCCGGAGGTC
*
7036668 TTGAAAA
1 TTTAAAA
7036675 TTACGATCGA
Statistics
Matches: 58, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
21 16 0.28
22 11 0.19
23 31 0.53
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (23 bp):
TTTAAAAATTATGCCCGGAGGTC
Found at i:7036688 original size:21 final size:22
Alignment explanation
Indices: 7036637--7036693 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
7036627 AAATTATGCC
* *
7036637 CGGAGGTCTTTAAAAATTATGCT
1 CGGAGGTC-TTAAAAATTACGAT
*
7036660 CGGAGGTCTTGAAAATTACGAT
1 CGGAGGTCTTAAAAATTACGAT
7036682 C-GAGGTCTTAAA
1 CGGAGGTCTTAAA
7036694 GATCTCAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 10 0.33
22 12 0.40
23 8 0.27
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (22 bp):
CGGAGGTCTTAAAAATTACGAT
Found at i:7037130 original size:73 final size:73
Alignment explanation
Indices: 7037053--7037192 Score: 158
Period size: 73 Copynumber: 1.9 Consensus size: 73
7037043 GATCAAATAT
* * * * *
7037053 CTTTTTGACGATATACATG-TAATTAATGCAAATGTGAATGTCTTTCTT-ATCATGTAGATGTGA
1 CTTTTTGACGATACACATGCGAA-TAATGCAAATGTGAATGCCTTT-TTAATCATGCACATGTGA
7037116 ATGTGAATGC
64 ATGTGAATGC
* ** * *
7037126 CTTTTTTATTATACACATGCGAATGATGCAAATGTGAATGCCTTTTTAATGATGCACATGTGAAT
1 CTTTTTGACGATACACATGCGAATAATGCAAATGTGAATGCCTTTTTAATCATGCACATGTGAAT
7037191 GT
66 GT
7037193 CTTTTTCATG
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
72 2 0.04
73 51 0.93
74 2 0.04
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (73 bp):
CTTTTTGACGATACACATGCGAATAATGCAAATGTGAATGCCTTTTTAATCATGCACATGTGAAT
GTGAATGC
Found at i:7037150 original size:32 final size:32
Alignment explanation
Indices: 7037078--7037150 Score: 74
Period size: 32 Copynumber: 2.3 Consensus size: 32
7037068 CATGTAATTA
* * ** *
7037078 ATGCAAATGTGAATGTCTTTCTTATCATGTAG
1 ATGCGAATGTGAATGCCTTTCTTATCATACAC
* * *
7037110 ATGTGAATGTGAATGCCTTTTTTATTATACAC
1 ATGCGAATGTGAATGCCTTTCTTATCATACAC
7037142 ATGCGAATG
1 ATGCGAATG
7037151 ATGCAAATGT
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (32 bp):
ATGCGAATGTGAATGCCTTTCTTATCATACAC
Found at i:7037223 original size:26 final size:26
Alignment explanation
Indices: 7037147--7037231 Score: 109
Period size: 26 Copynumber: 3.3 Consensus size: 26
7037137 TACACATGCG
* *
7037147 AATGATGCAAATGTGAATGCCTTTTT
1 AATGATGCACATGTGAATGTCTTTTT
7037173 AATGATGCACATGTGAATGTCTTTTT
1 AATGATGCACATGTGAATGTCTTTTT
* *
7037199 CATGATGCACATGT-AAGTGTTTTTTT
1 AATGATGCACATGTGAA-TGTCTTTTT
*
7037225 TATGATG
1 AATGATG
7037232 TATATGCGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
25 2 0.04
26 51 0.96
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.42
Consensus pattern (26 bp):
AATGATGCACATGTGAATGTCTTTTT
Found at i:7038164 original size:18 final size:16
Alignment explanation
Indices: 7038141--7038192 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 16
7038131 TCTCTCATTT
7038141 TTTATTACTTATTCTTAA
1 TTTATTA-TTATTCTT-A
7038159 TTTATTAATTAGTTCTTA
1 TTTATT-ATTA-TTCTTA
7038177 TTTATTATTATT-TTA
1 TTTATTATTATTCTTA
7038192 T
1 T
7038193 AAGAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.12
16 2 0.06
17 4 0.12
18 16 0.50
19 6 0.19
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (16 bp):
TTTATTATTATTCTTA
Found at i:7038350 original size:216 final size:207
Alignment explanation
Indices: 7037950--7038361 Score: 526
Period size: 215 Copynumber: 1.9 Consensus size: 207
7037940 TATTAATTAT
* *
7037950 TTTATTAATTATTTTATTTAAATTTTTAAAGGAAAAAAGAATTTTTATTATATTGAAGTTTTTAT
1 TTTATTAATTATTTTATTTAAATTTTTAAAGAAAAAAAGAATTTTTATTATATTGAAATTTTTAT
* * * *
7038015 ATAAATATTCCAATACACTGGTAATATTTAAAAAAAAATCTTCTCACTTAAAGATTTCTTAAAGC
66 ATAAATACTCAAATACACTGGTAATATTT-AAAAAAAATCTTCTCACATAAAGATTTCGTAAAGC
* *
7038080 ATATCTACTTGAAATACTTTTAGAATCCCATCATTGGATAAAATTTCCTTTTCTCTCATTTTTTA
130 ATATCTACTCGAAATACATTTAGAATCCCATCATTGGATAAAATTTCCTTTT-TCTCATTTTTTA
7038145 TTACTTATTCTTAA
194 TTACTTATTCTTAA
*
7038159 TTTATTAATTAGTTCTTATTTATTATTATTTTATAAGAAAAAAAGAAAATTTTTATTATATTGAA
1 TTTATTAATTA-TT-TTATTTA--AAT-TTTTA-AAGAAAAAAAG--AATTTTTATTATATTG-A
* * *
7038224 AATTTTTATATAAATACTCAAATACGCTGGTAGTATTT-AAAAAAATCTTCTCACATAGAGATTT
57 AATTTTTATATAAATACTCAAATACACTGGTAATATTTAAAAAAAATCTTCTCACATAAAGATTT
* * ** *
7038288 CGT-AAGTATCA-CTACTCGGAATACATTT-GAATCTTATCATTGGATAAAAATTTCTTTTTTCT
122 CGTAAAGCAT-ATCTACTCGAAATACATTTAGAATCCCATCATTGGAT-AAAATTTCCTTTTTCT
7038350 CATTTTTTATTA
185 CATTTTTTATTA
7038362 TTTTATAAGA
Statistics
Matches: 175, Mismatches: 17, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
209 11 0.06
210 2 0.01
211 7 0.04
213 2 0.01
214 35 0.20
215 41 0.23
216 27 0.15
217 16 0.09
218 34 0.19
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (207 bp):
TTTATTAATTATTTTATTTAAATTTTTAAAGAAAAAAAGAATTTTTATTATATTGAAATTTTTAT
ATAAATACTCAAATACACTGGTAATATTTAAAAAAAATCTTCTCACATAAAGATTTCGTAAAGCA
TATCTACTCGAAATACATTTAGAATCCCATCATTGGATAAAATTTCCTTTTTCTCATTTTTTATT
ACTTATTCTTAA
Found at i:7038355 original size:214 final size:208
Alignment explanation
Indices: 7037950--7038361 Score: 528
Period size: 214 Copynumber: 1.9 Consensus size: 208
7037940 TATTAATTAT
* *
7037950 TTTATTAATTATTTTATTTAAATTTTTAAAGGAAAAAAGAATTTTTATTATATTGAAGTTTTTAT
1 TTTATTAATTATTTTATTTAAATTTTTAAAGAAAAAAAGAATTTTTATTATATTGAAATTTTTAT
* * * *
7038015 ATAAATATTCCAATACACTGGTAATATTTAAAAAAAAATCTTCTCACTTAAAGATTTCTTAAAGC
66 ATAAATACTCAAATACACTGGTAATATTT-AAAAAAAATCTTCTCACATAAAGATTTCGTAAAGC
* *
7038080 ATATCTACTTGAAATACTTTTAGAATCCCATCATTGGATAAAATTTCCTTTTCTCTCATTTTTTA
130 ATATCTACTCGAAATACATTTAGAATCCCATCATTGGATAAAATTTCCTTTTCTCTCATTTTTTA
7038145 TTACTTATTCTTAA
195 TTACTTATTCTTAA
*
7038159 TTTATTAATTAGTTCTTATTTATTATTATTTTATAAGAAAAAAAGAAAATTTTTATTATATTGAA
1 TTTATTAATTA-TT-TTATTTA--AAT-TTTTA-AAGAAAAAAAG--AATTTTTATTATATTG-A
* * *
7038224 AATTTTTATATAAATACTCAAATACGCTGGTAGTATTT-AAAAAAATCTTCTCACATAGAGATTT
57 AATTTTTATATAAATACTCAAATACACTGGTAATATTTAAAAAAAATCTTCTCACATAAAGATTT
* * ** *
7038288 CGT-AAGTATCA-CTACTCGGAATACATTT-GAATCTTATCATTGGATAAAAATTT-CTTTTTTC
122 CGTAAAGCAT-ATCTACTCGAAATACATTTAGAATCCCATCATTGGAT-AAAATTTCCTTTTCTC
7038349 TCATTTTTTATTA
185 TCATTTTTTATTA
7038362 TTTTATAAGA
Statistics
Matches: 175, Mismatches: 17, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
209 11 0.06
210 2 0.01
211 7 0.04
213 2 0.01
214 40 0.23
215 36 0.21
216 27 0.15
217 16 0.09
218 34 0.19
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (208 bp):
TTTATTAATTATTTTATTTAAATTTTTAAAGAAAAAAAGAATTTTTATTATATTGAAATTTTTAT
ATAAATACTCAAATACACTGGTAATATTTAAAAAAAATCTTCTCACATAAAGATTTCGTAAAGCA
TATCTACTCGAAATACATTTAGAATCCCATCATTGGATAAAATTTCCTTTTCTCTCATTTTTTAT
TACTTATTCTTAA
Found at i:7039513 original size:12 final size:13
Alignment explanation
Indices: 7039479--7039519 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
7039469 CATCCCCTTT
7039479 TTTTATGTTT-TA
1 TTTTATGTTTATA
*
7039491 TTTTATTTTTATA
1 TTTTATGTTTATA
7039504 TTTT-TGTTTAATA
1 TTTTATGTTT-ATA
7039517 TTT
1 TTT
7039520 GTTTTTGGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 13 0.52
13 12 0.48
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.76
Consensus pattern (13 bp):
TTTTATGTTTATA
Found at i:7039540 original size:33 final size:32
Alignment explanation
Indices: 7039496--7039565 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
7039486 TTTTATTTTA
7039496 TTTTTATATTTTTGTTTAATA-TTTGT-TTTTGG
1 TTTTTATA-TTTT-TTTAATATTTTGTATTTTGG
* *
7039528 TATTTTGTATTTTTTTGATATTTTGTATTTTGG
1 T-TTTTATATTTTTTTAATATTTTGTATTTTGG
7039561 TTTTT
1 TTTTT
7039566 CTTTGTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
31 6 0.18
32 14 0.42
33 13 0.39
ACGTcount: A:0.14, C:0.00, G:0.13, T:0.73
Consensus pattern (32 bp):
TTTTTATATTTTTTTAATATTTTGTATTTTGG
Found at i:7039542 original size:18 final size:18
Alignment explanation
Indices: 7039521--7039558 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
7039511 TTAATATTTG
*
7039521 TTTTTGGTATTTTGTATT
1 TTTTTGATATTTTGTATT
7039539 TTTTTGATATTTTGTATT
1 TTTTTGATATTTTGTATT
7039557 TT
1 TT
7039559 GGTTTTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.74
Consensus pattern (18 bp):
TTTTTGATATTTTGTATT
Found at i:7039555 original size:25 final size:25
Alignment explanation
Indices: 7039517--7039582 Score: 84
Period size: 25 Copynumber: 2.6 Consensus size: 25
7039507 TTGTTTAATA
7039517 TTTGT-TTTTGGTATTTT-GTATTTT-
1 TTTGTATTTT-GTATTTTGGT-TTTTC
7039541 TTTGATATTTTGTATTTTGGTTTTTC
1 TTTG-TATTTTGTATTTTGGTTTTTC
7039567 TTTGTATTTTGTATTT
1 TTTGTATTTTGTATTT
7039583 AATAATATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
24 4 0.11
25 24 0.63
26 10 0.26
ACGTcount: A:0.11, C:0.02, G:0.15, T:0.73
Consensus pattern (25 bp):
TTTGTATTTTGTATTTTGGTTTTTC
Found at i:7039956 original size:59 final size:59
Alignment explanation
Indices: 7039858--7039971 Score: 174
Period size: 59 Copynumber: 1.9 Consensus size: 59
7039848 GTAAAGGCTC
* * * *
7039858 AACAGCTTTAAAAATTTCATCTTGAAAATGGCTCATCTCAATAGAGGCTTAACAACTTT
1 AACAACTTTAAAAATCTCATCTTGAAAAGGGCTCATCTCAACAGAGGCTTAACAACTTT
* *
7039917 AACAACTTTAAAAATCTCATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTTAACAA
1 AACAACTTTAAAAATCTCATCTTGAAAAGGGCTCATCTCAACAGAGGCTTAACAA
7039972 TTTTTGAAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 49 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (59 bp):
AACAACTTTAAAAATCTCATCTTGAAAAGGGCTCATCTCAACAGAGGCTTAACAACTTT
Found at i:7039990 original size:50 final size:50
Alignment explanation
Indices: 7039917--7040438 Score: 457
Period size: 49 Copynumber: 10.5 Consensus size: 50
7039907 TAACAACTTT
* * *
7039917 AACAACTTTAAAAATCTCATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTT
1 AACAACTTTTAAAATCTTATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTC
* * *
7039967 AACAATTTTTGAAATCTTATCTTGAAAA-AGCTCCTCTCAGCAGAGGCTC
1 AACAACTTTTAAAATCTTATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTC
* * ** *
7040016 AACAACTTTAAAAATTCTTATCTTGAAAAAGGCTTATCTCAGTAGAGGCTC
1 AACAACTTTTAAAA-TCTTATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTC
* * * * *
7040067 AACGACTTTAAAAATC--ATCTTGAAAAGGGCTCATATCAGTAGAGGCTC
1 AACAACTTTTAAAATCTTATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTC
* *
7040115 AACAAC-TTTAAAAT-TTAAAATC-T-AAAATAGGCTCCTCTCAGCAGAGGCTT
1 AACAACTTTTAAAATCTT---ATCTTGAAAA-GGGCTCCTCTCAGCAGAGGCTC
* * * * * *
7040165 AACAATTTTTGAAATCTTTTCTTGAAAA-AGCTCATCTCAGCAGAGGTTC
1 AACAACTTTTAAAATCTTATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTC
* * * * *
7040214 AACAACTTTAAAAATCTCATCTTGAAAAGGGCTTCTTTCAACAGAGGCTC
1 AACAACTTTTAAAATCTTATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTC
*
7040264 AACAAC-TTTAAAAT-TTCATCTTGAAAAGGG-TCTTCTCAGCAGAGGCTC
1 AACAACTTTTAAAATCTT-ATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTC
* ** *
7040312 AACAAC-TTTAAAAT-TTCATTTTGAAAAAGCTCATTTCAGCAGCTCAGCAGAGGCTC
1 AACAACTTTTAAAATCTT-ATCTTG-AAAAGGGC---TC--C-TCTCAGCAGAGGCTC
7040368 AACAAC-TTTAAAAT-TTCATCTTGGAAAA--GCTCCTCTCAGCAGAGGCTC
1 AACAACTTTTAAAATCTT-ATCTT-GAAAAGGGCTCCTCTCAGCAGAGGCTC
* *
7040416 AACAACTTTAAAAATCTCATCTT
1 AACAACTTTTAAAATCTTATCTT
7040439 TTCTCAAAAC
Statistics
Matches: 389, Mismatches: 58, Indels: 51
0.78 0.12 0.10
Matches are distributed among these distances:
47 7 0.02
48 91 0.23
49 114 0.29
50 86 0.22
51 46 0.12
52 2 0.01
53 2 0.01
54 1 0.00
56 39 0.10
57 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (50 bp):
AACAACTTTTAAAATCTTATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTC
Found at i:7040106 original size:48 final size:47
Alignment explanation
Indices: 7039917--7040431 Score: 424
Period size: 48 Copynumber: 10.3 Consensus size: 47
7039907 TAACAACTTT
* *
7039917 AACAACTTTAAAAATCTCATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTT
1 AACAACTTTAAAAA--TCATCTTGAAAA-GGCTCATCTCAGCAGAGGCTC
* ** * *
7039967 AACAATTTTTGAAATCTTATCTTGAAAAAGCTCCTCTCAGCAGAGGCTC
1 AACAACTTTAAAAATC--ATCTTGAAAAGGCTCATCTCAGCAGAGGCTC
* *
7040016 AACAACTTTAAAAATTCTTATCTTGAAAAAGGCTTATCTCAGTAGAGGCTC
1 AACAACTTTAAAAA-TC--ATCTTG-AAAAGGCTCATCTCAGCAGAGGCTC
* * *
7040067 AACGACTTTAAAAATCATCTTGAAAAGGGCTCATATCAGTAGAGGCTC
1 AACAACTTTAAAAATCATCTTGAAAA-GGCTCATCTCAGCAGAGGCTC
** * * *
7040115 AACAACTTTAAAATTTAAAATC-TAAAATAGGCTCCTCTCAGCAGAGGCTT
1 AACAACTTTAAAA---ATCATCTTGAAA-AGGCTCATCTCAGCAGAGGCTC
* ** * * *
7040165 AACAATTTTTGAAATCTTTTCTTGAAAAAGCTCATCTCAGCAGAGGTTC
1 AACAACTTTAAAAATC--ATCTTGAAAAGGCTCATCTCAGCAGAGGCTC
* *
7040214 AACAACTTTAAAAATCTCATCTTGAAAAGGGCTTC-TTTCAACAGAGGCTC
1 AACAACTTTAAAAA--TCATCTTGAAAA-GGC-TCATCTCAGCAGAGGCTC
* * *
7040264 AACAACTTTAAAATTTCATCTTGAAAAGGGTCTTCTCAGCAGAGGCTC
1 AACAACTTTAAAA-ATCATCTTGAAAAGGCTCATCTCAGCAGAGGCTC
* * *
7040312 AACAACTTTAAAATTTCATTTTGAAAAAGCTCATTTCAGCAGCTCAGCAGAGGCTC
1 AACAACTTTAAAA-ATCATCTTGAAAAGGCTCA--T------CTCAGCAGAGGCTC
* *
7040368 AACAACTTTAAAATTTCATCTTGGAAAA-GCTCCTCTCAGCAGAGGCTC
1 AACAACTTTAAAA-ATCATCTT-GAAAAGGCTCATCTCAGCAGAGGCTC
7040416 AACAACTTTAAAAATC
1 AACAACTTTAAAAATC
7040432 TCATCTTTTC
Statistics
Matches: 385, Mismatches: 53, Indels: 57
0.78 0.11 0.12
Matches are distributed among these distances:
47 9 0.02
48 110 0.29
49 82 0.21
50 96 0.25
51 43 0.11
54 1 0.00
56 39 0.10
57 5 0.01
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (47 bp):
AACAACTTTAAAAATCATCTTGAAAAGGCTCATCTCAGCAGAGGCTC
Found at i:7040147 original size:98 final size:96
Alignment explanation
Indices: 7039917--7040428 Score: 470
Period size: 99 Copynumber: 5.1 Consensus size: 96
7039907 TAACAACTTT
* * * * * * **
7039917 AACAACTTTAAAAATCTCATCTTGAAAAGGGCTCCTCTCAGCAGAGGCTTAACAATTTTTGAAAT
1 AACAACTTT-AAAATTTAATCTTGAAAAAGGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAAAT
*
7039982 CTTATCTTGAAAAAGCTCCTCTCAGCAGAGGCTC
65 C--ATCTTGAAAAAGCTCATCTCAGCAGAGGCTC
* * * *
7040016 AACAACTTTAAAAATTCTTATCTTGAAAAAGGCTTATCTCAGTAGAGGCTCAACGACTTTAAAAA
1 AACAACTTT-AAAATT-TAATCTTGAAAAAGGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAAA
* * *
7040081 TCATCTTGAAAAGGGCTCATATCAGTAGAGGCTC
64 TCATCTTGAAAA-AGCTCATCTCAGCAGAGGCTC
* * * **
7040115 AACAACTTTAAAATTTAAAATC-T-AAAATAGGCTCCTCTCAGCAGAGGCTTAACAATTTTTGAA
1 AACAACTTTAAAATTT--AATCTTGAAAA-AGGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAA
* *
7040178 ATCTTTTCTTGAAAAAGCTCATCTCAGCAGAGGTTC
63 ATC--ATCTTGAAAAAGCTCATCTCAGCAGAGGCTC
* * * * * *
7040214 AACAACTTTAAAAATCTCATCTTGAAAAGGGCTTCTTTCAACAGAGGCTCAACAACTTTAAAATT
1 AACAACTTT-AAAATTTAATCTTGAAAAAGGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAA-A
* * *
7040279 TCATCTTGAAAAGGGTCTTCTCAGCAGAGGCTC
64 TCATCTTGAAAAAGCTCATCTCAGCAGAGGCTC
* * * *
7040312 AACAACTTTAAAATTTCATTTTGAAAAAGCTCATTTCAGCAGCTCAGCAGAGGCTCAACAACTTT
1 AACAACTTTAAAATTTAATCTTGAAAAAG-GC--TT---C-TCTCAGCAGAGGCTCAACAACTTT
* * *
7040377 AAAATTTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTC
59 AAAA-ATCATCTTGAAAAAGCTCATCTCAGCAGAGGCTC
7040416 AACAACTTTAAAA
1 AACAACTTTAAAA
7040429 ATCTCATCTT
Statistics
Matches: 339, Mismatches: 56, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
97 22 0.06
98 86 0.25
99 98 0.29
100 63 0.19
103 1 0.00
104 69 0.20
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (96 bp):
AACAACTTTAAAATTTAATCTTGAAAAAGGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAAATC
ATCTTGAAAAAGCTCATCTCAGCAGAGGCTC
Found at i:7040221 original size:198 final size:198
Alignment explanation
Indices: 7039830--7040438 Score: 671
Period size: 198 Copynumber: 3.0 Consensus size: 198
7039820 ATTTAAACTC
* * *
7039830 TGAAAAAGACTCTTCTCAGTAAAGGCTCAACAGCTTTAAAAATTTCATCTTGAAAATGGCTCATC
1 TGAAAAAGGCT-TTCTCAGTAGAGGCTCAACA-CTTTAAAAA--TCATCTTGAAAAGGGCTCATC
* *
7039895 TCAATAGAGGCTTAACAACTTTAACAACTTTAAAAATCTCATCTTGAAAAGGGCTCCTCTCAGCA
62 TCAGTAGAGGCTCAACAACTTTAA-AA-TTTAAAAATCTCA---T-AAAAGGGCTCCTCTCAGCA
*
7039960 GAGGCTTAACAATTTTTGAAATCTTATCTTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
121 GAGGCTTAACAATTTTTGAAATCTTATCTTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTT
*
7040025 AAAAATTCTTATCT
186 AAAAA-TCTCATCT
*
7040039 TGAAAAAGGCTTATCTCAGTAGAGGCTCAACGACTTTAAAAATCATCTTGAAAAGGGCTCATATC
1 TGAAAAAGGCTT-TCTCAGTAGAGGCTCAAC-ACTTTAAAAATCATCTTGAAAAGGGCTCATCTC
7040104 AGTAGAGGCTCAACAACTTTAAAATTT-AAAATCT-A-AAATA-GGCTCCTCTCAGCAGAGGCTT
64 AGTAGAGGCTCAACAACTTTAAAATTTAAAAATCTCATAAA-AGGGCTCCTCTCAGCAGAGGCTT
* *
7040165 AACAATTTTTGAAATCTTTTCTTGAAAAAGCTCATCTCAGCAGAGGTTCAACAACTTTAAAAATC
128 AACAATTTTTGAAATCTTATCTTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATC
7040230 TCATCT
193 TCATCT
* * ** * *
7040236 TGAAAAGGGCTTCTTTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAGGG-TCTTCT
1 TGAAAAAGGCTT-TCTCAGTAGAGGCTCAAC-ACTTTAAAA-ATCATCTTGAAAAGGGCTCATCT
* * * * * ** *
7040300 CAGCAGAGGCTCAACAACTTTAAAATTT--CATTTTGA-AAAAGCTCATTTCAGCAGCTCAGCAG
63 CAGTAGAGGCTCAACAACTTTAAAATTTAAAAATCTCATAAAAGGGC---TC--C-TCTCAGCAG
* * * * *
7040362 AGGCTCAACAA-CTTTAAAAT-TTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
122 AGGCTTAACAATTTTTGAAATCTT-ATCTTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTT
7040425 AAAAATCTCATCT
186 AAAAATCTCATCT
7040438 T
1 T
7040439 TTCTCAAAAC
Statistics
Matches: 354, Mismatches: 33, Indels: 33
0.84 0.08 0.08
Matches are distributed among these distances:
196 4 0.01
197 78 0.22
198 99 0.28
199 1 0.00
200 2 0.01
201 2 0.01
202 58 0.16
203 19 0.05
204 7 0.02
205 3 0.01
206 2 0.01
207 41 0.12
208 1 0.00
209 36 0.10
210 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (198 bp):
TGAAAAAGGCTTTCTCAGTAGAGGCTCAACACTTTAAAAATCATCTTGAAAAGGGCTCATCTCAG
TAGAGGCTCAACAACTTTAAAATTTAAAAATCTCATAAAAGGGCTCCTCTCAGCAGAGGCTTAAC
AATTTTTGAAATCTTATCTTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATCTCA
TCT
Found at i:7040364 original size:56 final size:56
Alignment explanation
Indices: 7040298--7040409 Score: 188
Period size: 56 Copynumber: 2.0 Consensus size: 56
7040288 AAAGGGTCTT
* *
7040298 CTCAGCAGAGGCTCAACAACTTTAAAATTTCATTTTGAAAAAGCTCATTTCAGCAG
1 CTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGCTCATCTCAGCAG
* *
7040354 CTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTTGGAAAAGCTCCTCTCAGCAG
1 CTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGCTCATCTCAGCAG
7040410 AGGCTCAACA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (56 bp):
CTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGCTCATCTCAGCAG
Found at i:7041174 original size:9 final size:8
Alignment explanation
Indices: 7041155--7041198 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
7041145 TGAGTCATTA
7041155 TTTTTTAT
1 TTTTTTAT
7041163 TTTTTTACT
1 TTTTTTA-T
*
7041172 TTTTTCAT
1 TTTTTTAT
*
7041180 TTTTTTCT
1 TTTTTTAT
7041188 CTTTTTTAT
1 -TTTTTTAT
7041197 TT
1 TT
7041199 CAAGCAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
8 16 0.53
9 14 0.47
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTAT
Found at i:7041181 original size:17 final size:15
Alignment explanation
Indices: 7041155--7041198 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 15
7041145 TGAGTCATTA
7041155 TTTTTTATTTTTTTAC
1 TTTTTTATTTTTTT-C
7041171 TTTTTTCATTTTTTTCTC
1 TTTTTT-A-TTTTTT-TC
7041189 TTTTTTATTT
1 TTTTTTATTT
7041199 CAAGCAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 9 0.36
17 2 0.08
18 13 0.52
19 1 0.04
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTATTTTTTTC
Found at i:7051034 original size:19 final size:20
Alignment explanation
Indices: 7051010--7051061 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
7051000 AGAAAAAATA
*
7051010 TTTTTTGTTTTTTAG-TGTT
1 TTTTTTGTTTTTGAGATGTT
*
7051029 TTTTTTGTGTTTTGAGATTTT
1 TTTTTTGT-TTTTGAGATGTT
7051050 TTGTTTTGTTTT
1 TT-TTTTGTTTT
7051062 GTTTTGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 8 0.29
20 6 0.21
21 8 0.29
22 6 0.21
ACGTcount: A:0.06, C:0.00, G:0.17, T:0.77
Consensus pattern (20 bp):
TTTTTTGTTTTTGAGATGTT
Found at i:7051050 original size:20 final size:20
Alignment explanation
Indices: 7051010--7051062 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
7051000 AGAAAAAATA
*
7051010 TTTTTTGT-TTTTTAGTGTT
1 TTTTTTGTGTTTTGAGTGTT
7051029 TTTTTTGTGTTTTGAGAT-TT
1 TTTTTTGTGTTTTGAG-TGTT
7051049 TTTGTTT-TGTTTTG
1 TTT-TTTGTGTTTTG
7051063 TTTTGTTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 8 0.27
20 18 0.60
21 4 0.13
ACGTcount: A:0.06, C:0.00, G:0.19, T:0.75
Consensus pattern (20 bp):
TTTTTTGTGTTTTGAGTGTT
Found at i:7051058 original size:5 final size:5
Alignment explanation
Indices: 7051048--7051073 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7051038 TTTTGAGATT
7051048 TTTTG TTTTG TTTTG TTTTG TTTTG T
1 TTTTG TTTTG TTTTG TTTTG TTTTG T
7051074 ATTACGCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTTTG
Found at i:7052523 original size:18 final size:16
Alignment explanation
Indices: 7052500--7052551 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 16
7052490 TCTCTCATTT
7052500 TTTATTACTTATTCTTAA
1 TTTATTA-TTATTCTT-A
7052518 TTTATTAATTAGTTCTTA
1 TTTATT-ATTA-TTCTTA
7052536 TTTATTATTATT-TTA
1 TTTATTATTATTCTTA
7052551 T
1 T
7052552 AAGAAAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.12
16 2 0.06
17 4 0.12
18 16 0.50
19 6 0.19
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (16 bp):
TTTATTATTATTCTTA
Found at i:7053909 original size:24 final size:24
Alignment explanation
Indices: 7053884--7053947 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 24
7053874 TGTTCTATTT
7053884 TTTTATA-TTTTT-GT-TTTTGGTA
1 TTTTATATTTTTTGGTATTTT-GTA
7053906 TTTTATATTTTTTGGTATTTTGTA
1 TTTTATATTTTTTGGTATTTTGTA
*
7053930 TTTTGTA--TTTTGGTATTT
1 TTTTATATTTTTTGGTATTT
7053948 CTTTGTATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
22 18 0.47
23 5 0.13
24 11 0.29
25 4 0.11
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (24 bp):
TTTTATATTTTTTGGTATTTTGTA
Found at i:7053915 original size:32 final size:33
Alignment explanation
Indices: 7053879--7053964 Score: 99
Period size: 32 Copynumber: 2.7 Consensus size: 33
7053869 TTTTCTGTTC
*
7053879 TATTTTTTTATATTTTTGT-TTTTGGTATTTT-A
1 TATTTTTTTGTATTTTTGTATTTT-GTATTTTGA
* *
7053911 TATTTTTTGGTA-TTTTGTATTTTGTATTTTGG
1 TATTTTTTTGTATTTTTGTATTTTGTATTTTGA
*
7053943 TATTTCTTTGTA-TTTTGTATTT
1 TATTTTTTTGTATTTTTGTATTT
7053965 AATAATATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
31 13 0.28
32 34 0.72
ACGTcount: A:0.14, C:0.01, G:0.13, T:0.72
Consensus pattern (33 bp):
TATTTTTTTGTATTTTTGTATTTTGTATTTTGA
Found at i:7053917 original size:17 final size:17
Alignment explanation
Indices: 7053897--7053933 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
7053887 TATATTTTTG
7053897 TTTTTGGTATTTTATAT
1 TTTTTGGTATTTTATAT
*
7053914 TTTTTGGTATTTTGTAT
1 TTTTTGGTATTTTATAT
7053931 TTT
1 TTT
7053934 GTATTTTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.73
Consensus pattern (17 bp):
TTTTTGGTATTTTATAT
Found at i:7053954 original size:18 final size:17
Alignment explanation
Indices: 7053903--7053964 Score: 69
Period size: 17 Copynumber: 3.8 Consensus size: 17
7053893 TTTGTTTTTG
*
7053903 GTATTTTATATTT-TTT
1 GTATTTTGTATTTCTTT
7053919 GGTATTTTGTA--T-TTT
1 -GTATTTTGTATTTCTTT
7053934 GTATTTTGGTATTTCTTT
1 GTATTTT-GTATTTCTTT
7053952 GTATTTTGTATTT
1 GTATTTTGTATTT
7053965 AATAATATTA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
14 7 0.17
15 7 0.17
17 16 0.40
18 10 0.25
ACGTcount: A:0.15, C:0.02, G:0.15, T:0.69
Consensus pattern (17 bp):
GTATTTTGTATTTCTTT
Found at i:7053959 original size:7 final size:7
Alignment explanation
Indices: 7053892--7053964 Score: 58
Period size: 7 Copynumber: 9.4 Consensus size: 7
7053882 TTTTTTATAT
7053892 TTTTGT-
1 TTTTGTA
7053898 TTTTGGTA
1 TTTT-GTA
*
7053906 TTTTATA
1 TTTTGTA
7053913 TTTTTTGGTA
1 --TTTT-GTA
7053923 TTTTGTA
1 TTTTGTA
7053930 TTTTGTA
1 TTTTGTA
7053937 TTTTGGTA
1 TTTT-GTA
7053945 TTTCTTTGTA
1 --T-TTTGTA
7053955 TTTTGTA
1 TTTTGTA
7053962 TTT
1 TTT
7053965 AATAATATTA
Statistics
Matches: 56, Mismatches: 2, Indels: 17
0.75 0.03 0.23
Matches are distributed among these distances:
6 4 0.07
7 27 0.48
8 12 0.21
9 4 0.07
10 6 0.11
11 3 0.05
ACGTcount: A:0.12, C:0.01, G:0.15, T:0.71
Consensus pattern (7 bp):
TTTTGTA
Found at i:7055057 original size:8 final size:8
Alignment explanation
Indices: 7055039--7055083 Score: 74
Period size: 8 Copynumber: 5.6 Consensus size: 8
7055029 TCTTTTAATT
7055039 AAAAAAT-
1 AAAAAATA
7055046 AAAAAATA
1 AAAAAATA
7055054 AAAAAATA
1 AAAAAATA
7055062 AAAAAATAA
1 AAAAAAT-A
7055071 AAAAAATA
1 AAAAAATA
7055079 AAAAA
1 AAAAA
7055084 GTGGTTGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.19
8 21 0.58
9 8 0.22
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATA
Found at i:7055065 original size:16 final size:17
Alignment explanation
Indices: 7055039--7055083 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
7055029 TCTTTTAATT
7055039 AAAAAAT-AAAAAAT-A
1 AAAAAATAAAAAAATAA
7055054 AAAAAATAAAAAAATAA
1 AAAAAATAAAAAAATAA
7055071 AAAAAATAAAAAA
1 AAAAAATAAAAAA
7055084 GTGGTTGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.25
16 7 0.25
17 14 0.50
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAAAATAAAAAAATAA
Found at i:7055401 original size:20 final size:20
Alignment explanation
Indices: 7055358--7055403 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7055348 GGTTTCAAAT
**
7055358 AAAAAAAAAAAAGAGAAGCC
1 AAAAAAAAAAAAGAGAAAAC
*
7055378 AAAAAAAAAAAAGAGAAAAG
1 AAAAAAAAAAAAGAGAAAAC
7055398 AAAAAA
1 AAAAAA
7055404 GAATGCCACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.83, C:0.04, G:0.13, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAAAGAGAAAAC
Found at i:7055791 original size:22 final size:21
Alignment explanation
Indices: 7055763--7055847 Score: 83
Period size: 22 Copynumber: 4.2 Consensus size: 21
7055753 CAATAGATAA
7055763 AAAATGAGAAAAGAAAAAAATG
1 AAAATGAG-AAAGAAAAAAATG
*
7055785 AAAATGAG-AAGAGAAAAAGTG
1 AAAATGAGAAAGA-AAAAAATG
7055806 -AAA--AG--AGAAAAAAATG
1 AAAATGAGAAAGAAAAAAATG
*
7055822 AAAAATGAGAAGGAAAAAAATG
1 -AAAATGAGAAAGAAAAAAATG
7055844 AAAA
1 AAAA
7055848 AAATGAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
16 7 0.13
17 3 0.06
18 5 0.09
20 9 0.17
21 11 0.21
22 18 0.34
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (21 bp):
AAAATGAGAAAGAAAAAAATG
Found at i:7055815 original size:37 final size:37
Alignment explanation
Indices: 7055761--7055858 Score: 119
Period size: 37 Copynumber: 2.6 Consensus size: 37
7055751 ACCAATAGAT
7055761 AAAAAATGAGAAAAGAAAAAAATG-AAAATGAGAAGAG
1 AAAAAATGAGAAAAGAAAAAAATGAAAAATGAGAAG-G
*
7055798 AAAAAGTGA-AAAGAGAAAAAAATGAAAAATGAGAAGG
1 AAAAAATGAGAAA-AGAAAAAAATGAAAAATGAGAAGG
*
7055835 AAAAAAATGAAAAAAATGAAAAAA
1 -AAAAAATG-AGAAAA-GAAAAAA
7055859 GAGAAAGAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
36 3 0.06
37 20 0.38
38 18 0.34
39 2 0.04
40 10 0.19
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.08
Consensus pattern (37 bp):
AAAAAATGAGAAAAGAAAAAAATGAAAAATGAGAAGG
Found at i:7055847 original size:31 final size:31
Alignment explanation
Indices: 7055761--7055870 Score: 102
Period size: 31 Copynumber: 3.6 Consensus size: 31
7055751 ACCAATAGAT
7055761 AAAAAATGAGAAAAGAAAAAAATG---AAAATG
1 AAAAAA-GAG-AAAGAAAAAAATGAAAAAAATG
* * * * *
7055791 AGAAGAGAAAAAGTGAAAAGA-GAAAAAAATG
1 AAAAAAGAGAAAG-AAAAAAATGAAAAAAATG
* *
7055822 AAAAATGAGAAGGAAAAAAATGAAAAAAATG
1 AAAAAAGAGAAAGAAAAAAATGAAAAAAATG
7055853 AAAAAAGAGAAAGAAAAA
1 AAAAAAGAGAAAGAAAAA
7055871 GATAAAGAGA
Statistics
Matches: 61, Mismatches: 14, Indels: 9
0.73 0.17 0.11
Matches are distributed among these distances:
28 5 0.08
29 7 0.11
30 9 0.15
31 40 0.66
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (31 bp):
AAAAAAGAGAAAGAAAAAAATGAAAAAAATG
Found at i:7055849 original size:24 final size:24
Alignment explanation
Indices: 7055797--7055856 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
7055787 AATGAGAAGA
*
7055797 GAAAAAGTGAAAAGAGAAAAAAAT
1 GAAAAAATGAAAAGAGAAAAAAAT
*
7055821 G-AAAAATGAGAAG-GAAAAAAAT
1 GAAAAAATGAAAAGAGAAAAAAAT
7055843 GAAAAAAATGAAAA
1 G-AAAAAATGAAAA
7055857 AAGAGAAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
22 10 0.32
23 10 0.32
24 11 0.35
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.08
Consensus pattern (24 bp):
GAAAAAATGAAAAGAGAAAAAAAT
Found at i:7055869 original size:12 final size:12
Alignment explanation
Indices: 7055854--7055896 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
7055844 AAAAAAATGA
7055854 AAAAAGAGAAAG
1 AAAAAGAGAAAG
*
7055866 AAAAAGATAAAG
1 AAAAAGAGAAAG
*
7055878 AGAAAGAAGAAGAG
1 AAAAAG-AGAA-AG
7055892 AAAAA
1 AAAAA
7055897 AATAGAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 16 0.64
13 3 0.12
14 6 0.24
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.02
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:7055881 original size:49 final size:49
Alignment explanation
Indices: 7055806--7055905 Score: 123
Period size: 49 Copynumber: 2.0 Consensus size: 49
7055796 AGAAAAAGTG
* *
7055806 AAAAGAGAAAAAAATGAAAAATGAGAAGGAAAAAAATGAAAAAAAT-GAA
1 AAAAGAGAAAAAAAAGAAAAATGAGAAAGAAAAAAA-GAAAAAAATAGAA
* * *
7055855 AAAAGAGAAAGAAAAAGATAAA-GAGAAAGAAGAAGAGAAAAAAATAGAA
1 AAAAGAGAAA-AAAAAGAAAAATGAGAAAGAAAAAAAGAAAAAAATAGAA
7055904 AA
1 AA
7055906 TAAAGGAATG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
48 9 0.20
49 26 0.59
50 9 0.20
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.06
Consensus pattern (49 bp):
AAAAGAGAAAAAAAAGAAAAATGAGAAAGAAAAAAAGAAAAAAATAGAA
Found at i:7055883 original size:18 final size:18
Alignment explanation
Indices: 7055856--7055890 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7055846 AAAAATGAAA
7055856 AAAGAGAAAGAAAAAGAT
1 AAAGAGAAAGAAAAAGAT
*
7055874 AAAGAGAAAGAAGAAGA
1 AAAGAGAAAGAAAAAGA
7055891 GAAAAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (18 bp):
AAAGAGAAAGAAAAAGAT
Found at i:7057334 original size:21 final size:21
Alignment explanation
Indices: 7057288--7057583 Score: 163
Period size: 21 Copynumber: 13.5 Consensus size: 21
7057278 TGAGAATATT
*
7057288 TGAGAATCTTTGAGTTTTTCAAA
1 TGAGAATCTTTGAG-TCTT-AAA
7057311 TGAGAATCTTTGAGTCTTAAA
1 TGAGAATCTTTGAGTCTTAAA
* * *
7057332 TGAAAATCTTTAAGACTTAAA
1 TGAGAATCTTTGAGTCTTAAA
* * *
7057353 TGAAAATCTTTAAG----ACA
1 TGAGAATCTTTGAGTCTTAAA
*
7057370 --AGAATCTTTAAGTCTTAAA
1 TGAGAATCTTTGAGTCTTAAA
* * *
7057389 TGAGAATCTTTAAGACATTTTCGAA
1 TGAGAATCTTT--GA-GTCTT-AAA
* *
7057414 TAAGAATCTTTGAGCCTTAAA
1 TGAGAATCTTTGAGTCTTAAA
* *
7057435 TGAGAATCTTTAAGACATTTTCAAA
1 TGAGAATCTTT--GA-GTCTT-AAA
* *
7057460 TGAGAATCTTTGAGCCTAAAA
1 TGAGAATCTTTGAGTCTTAAA
* * *
7057481 TAAGAATCTTTAAGATATTTTCAAA
1 TGAGAATCTTT--GA-GTCTT-AAA
*
7057506 TGAGAATCTTTGAGTTTTAAA
1 TGAGAATCTTTGAGTCTTAAA
* *
7057527 TGAGAATCTTTAAGATATTTTCAAA
1 TGAGAATCTTT--GA-GTCTT-AAA
* *
7057552 TGAAAATCTTTGACTCTTAAA
1 TGAGAATCTTTGAGTCTTAAA
7057573 TGAGAATCTTT
1 TGAGAATCTTT
7057584 AAAAGAATCT
Statistics
Matches: 215, Mismatches: 36, Indels: 46
0.72 0.12 0.15
Matches are distributed among these distances:
15 11 0.05
17 2 0.01
19 2 0.01
21 96 0.45
22 13 0.06
23 29 0.13
24 10 0.05
25 52 0.24
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (21 bp):
TGAGAATCTTTGAGTCTTAAA
Found at i:7057387 original size:36 final size:36
Alignment explanation
Indices: 7057336--7057405 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
7057326 CTTAAATGAA
7057336 AATCTTTAAGACTTAAATGAAAATCTTTAAGACAAG
1 AATCTTTAAGACTTAAATGAAAATCTTTAAGACAAG
* *
7057372 AATCTTTAAGTCTTAAATGAGAATCTTTAAGACA
1 AATCTTTAAGACTTAAATGAAAATCTTTAAGACA
7057406 TTTTCGAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33
Consensus pattern (36 bp):
AATCTTTAAGACTTAAATGAAAATCTTTAAGACAAG
Found at i:7057436 original size:46 final size:46
Alignment explanation
Indices: 7057369--7057585 Score: 303
Period size: 46 Copynumber: 4.7 Consensus size: 46
7057359 TCTTTAAGAC
* * *
7057369 AAGAATCTTTAAGTCTTAAATGAGAATCTTTAAGACATTTTCGAAT
1 AAGAATCTTTGAGCCTTAAATGAGAATCTTTAAGACATTTTCAAAT
7057415 AAGAATCTTTGAGCCTTAAATGAGAATCTTTAAGACATTTTCAAAT
1 AAGAATCTTTGAGCCTTAAATGAGAATCTTTAAGACATTTTCAAAT
* * * *
7057461 GAGAATCTTTGAGCCTAAAATAAGAATCTTTAAGATATTTTCAAAT
1 AAGAATCTTTGAGCCTTAAATGAGAATCTTTAAGACATTTTCAAAT
* ** *
7057507 GAGAATCTTTGAGTTTTAAATGAGAATCTTTAAGATATTTTCAAAT
1 AAGAATCTTTGAGCCTTAAATGAGAATCTTTAAGACATTTTCAAAT
7057553 GAA-AATCTTTGA-CTCTTAAATGAGAATCTTTAA
1 -AAGAATCTTTGAGC-CTTAAATGAGAATCTTTAA
7057586 AAGAATCTTT
Statistics
Matches: 155, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
46 154 0.99
47 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (46 bp):
AAGAATCTTTGAGCCTTAAATGAGAATCTTTAAGACATTTTCAAAT
Found at i:7057624 original size:33 final size:33
Alignment explanation
Indices: 7057530--7057661 Score: 105
Period size: 33 Copynumber: 4.0 Consensus size: 33
7057520 TTTTAAATGA
* *
7057530 GAATCTTTAAGATATTTTCAAATGAAAATCTTT
1 GAATCTTTAAGATGTTTTCAAATGAGAATCTTT
* *
7057563 GACTCTTAAATGA-GAATCTTT-AAA--AGAATCTTT
1 GAATCTTTAA-GATG--T-TTTCAAATGAGAATCTTT
*
7057596 GAATCTTTAAGATGTTTTCAAATGAGAATATTT
1 GAATCTTTAAGATGTTTTCAAATGAGAATCTTT
* *
7057629 GAGGATCTGTGAG-T-TTTTCAAATGAGAATCTTT
1 GA--ATCTTTAAGATGTTTTCAAATGAGAATCTTT
7057662 AAGAAAAACT
Statistics
Matches: 79, Mismatches: 10, Indels: 20
0.72 0.09 0.18
Matches are distributed among these distances:
30 3 0.04
31 4 0.05
32 2 0.03
33 53 0.67
34 3 0.04
35 11 0.14
36 3 0.04
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (33 bp):
GAATCTTTAAGATGTTTTCAAATGAGAATCTTT
Found at i:7057752 original size:20 final size:20
Alignment explanation
Indices: 7057719--7057757 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7057709 AAGATTTGTT
*
7057719 GAATGTGAACCTTTGAACTC
1 GAATGAGAACCTTTGAACTC
*
7057739 GAATGAGAAGCTTTGAACT
1 GAATGAGAACCTTTGAACT
7057758 TTTGGATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.28
Consensus pattern (20 bp):
GAATGAGAACCTTTGAACTC
Found at i:7057801 original size:43 final size:44
Alignment explanation
Indices: 7057737--7057850 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 44
7057727 ACCTTTGAAC
* *
7057737 TCGAATGAGAAGCTTTGAACTTTTGGATGAT-AATTTCTAAAAT
1 TCGAATGAGAAGCTTTAAACTTTTGGATGATGAATCTCTAAAAT
*
7057780 TCGAATGAAAAGCTTTAAACTTTTGGAT-ATGAATCTCTAAAAT
1 TCGAATGAGAAGCTTTAAACTTTTGGATGATGAATCTCTAAAAT
* *
7057823 TTGAATGAGAATCTTTAAA-TTTTGGATG
1 TCGAATGAGAAGCTTTAAACTTTTGGATG
7057851 CAAGTCTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
42 10 0.16
43 53 0.84
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (44 bp):
TCGAATGAGAAGCTTTAAACTTTTGGATGATGAATCTCTAAAAT
Found at i:7057920 original size:16 final size:16
Alignment explanation
Indices: 7057879--7057919 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
7057869 AATGCGAATC
* *
7057879 TTGAAATCTTACAAAT
1 TTGAAATTTTGCAAAT
7057895 TTGAAATTTTGCAAAT
1 TTGAAATTTTGCAAAT
7057911 TTG-AATTTT
1 TTGAAATTTT
7057920 TATGAAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (16 bp):
TTGAAATTTTGCAAAT
Found at i:7058148 original size:41 final size:41
Alignment explanation
Indices: 7058098--7058276 Score: 211
Period size: 41 Copynumber: 4.4 Consensus size: 41
7058088 GCAATTTAAG
* * *
7058098 TTTT-AAAGTTGTGATGCCTCTATTTAGAAGAGCAATTTAC
1 TTTTCAAAGTTGTGGTGCCTCTATTTAGAAGAGCATTTTAT
* ** *
7058138 TTTTCTAAGTTGTGGTGCCTCCGTTTAGATGAGCATTTTAT
1 TTTTCAAAGTTGTGGTGCCTCTATTTAGAAGAGCATTTTAT
* *
7058179 TTTTCAAAGTTGTGGTGCCTTTATTTAGAAAAGCATTTTAT
1 TTTTCAAAGTTGTGGTGCCTCTATTTAGAAGAGCATTTTAT
* * *
7058220 TTTT-GAAGTTATGGTGCCTCTGTTTAG-AGTAGCATTTTAT
1 TTTTCAAAGTTGTGGTGCCTCTATTTAGAAG-AGCATTTTAT
7058260 TTTTCCAAAGTTGTGGT
1 TTTT-CAAAGTTGTGGT
7058277 ACTTTTGTTT
Statistics
Matches: 115, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 37 0.32
41 68 0.59
42 9 0.08
ACGTcount: A:0.23, C:0.12, G:0.20, T:0.45
Consensus pattern (41 bp):
TTTTCAAAGTTGTGGTGCCTCTATTTAGAAGAGCATTTTAT
Found at i:7058271 original size:82 final size:82
Alignment explanation
Indices: 7058098--7058276 Score: 249
Period size: 81 Copynumber: 2.2 Consensus size: 82
7058088 GCAATTTAAG
* * *
7058098 TTTT-AAAGTTGTGATGCCTCTATTTAGAAGAGCAATTTACTTTTCTAAGTTGTGGTGCCTCCGT
1 TTTTCAAAGTTGTGGTGCCTCTATTTAGAAAAGCAATTTACTTTTCTAAGTTATGGTGCCTCCGT
7058162 TTAGATGAGCATTTTAT
66 TTAGATGAGCATTTTAT
* * *
7058179 TTTTCAAAGTTGTGGTGCCTTTATTTAGAAAAGCATTTTA-TTTT-TGAAGTTATGGTGCCTCTG
1 TTTTCAAAGTTGTGGTGCCTCTATTTAGAAAAGCAATTTACTTTTCT-AAGTTATGGTGCCTCCG
7058242 TTTAGA-GTAGCATTTTAT
65 TTTAGATG-AGCATTTTAT
7058260 TTTTCCAAAGTTGTGGT
1 TTTT-CAAAGTTGTGGT
7058277 ACTTTTGTTT
Statistics
Matches: 88, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
80 2 0.02
81 43 0.49
82 43 0.49
ACGTcount: A:0.23, C:0.12, G:0.20, T:0.45
Consensus pattern (82 bp):
TTTTCAAAGTTGTGGTGCCTCTATTTAGAAAAGCAATTTACTTTTCTAAGTTATGGTGCCTCCGT
TTAGATGAGCATTTTAT
Found at i:7059562 original size:8 final size:7
Alignment explanation
Indices: 7059547--7059594 Score: 51
Period size: 8 Copynumber: 6.4 Consensus size: 7
7059537 ATTTACTTTC
7059547 AAAATAA
1 AAAATAA
7059554 AATAATAA
1 AA-AATAA
7059562 AAAATATA
1 AAAATA-A
*
7059570 AAAATAT
1 AAAATAA
*
7059577 AACATAA
1 AAAATAA
7059584 AAATATAA
1 AAA-ATAA
7059592 AAA
1 AAA
7059595 TTTTGGAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
7 13 0.38
8 21 0.62
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (7 bp):
AAAATAA
Found at i:7059565 original size:15 final size:14
Alignment explanation
Indices: 7059547--7059594 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
7059537 ATTTACTTTC
7059547 AAAATAAAATAATAA
1 AAAATAAAA-AATAA
*
7059562 AAAATATAAAAATAT
1 AAAATA-AAAAATAA
*
7059577 AACATAAAAATATAA
1 AAAATAAAAA-ATAA
7059592 AAA
1 AAA
7059595 TTTTGGAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 4 0.15
15 20 0.74
16 3 0.11
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAATAAAAAATAA
Found at i:7059585 original size:13 final size:13
Alignment explanation
Indices: 7059567--7059591 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7059557 AATAAAAAAT
7059567 ATAAAAATATAAC
1 ATAAAAATATAAC
7059580 ATAAAAATATAA
1 ATAAAAATATAA
7059592 AAATTTTGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAAAAATATAAC
Found at i:7060065 original size:97 final size:98
Alignment explanation
Indices: 7059924--7060107 Score: 230
Period size: 97 Copynumber: 1.9 Consensus size: 98
7059914 TTCAAAAAAA
* * *
7059924 AGAAATAAAAATAATTTGTAAATAGGCCCAAATTGTGAAAAATTTAAAAATTCTGAAA-AA-AAA
1 AGAAATAAAAATAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAAAAATTC-AAAACAAGAAA
7059987 A-ATTTCTAAATTGACCCAAATGGTGAAAAATTT
65 ATATTTCTAAATTGACCCAAATGGTGAAAAATTT
** * * * *
7060020 AGAAATAAAAATTTTTTTCTAAATTGGCCCAAATGGTGGAGAATTTAGAAATTCAAAACAAGAAA
1 AGAAATAAAAA-TAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAAAAATTCAAAACAAGAAA
* *
7060085 ATATTTCTAATTTGGCCCAAATG
65 ATATTTCTAAATTGACCCAAATG
7060108 ATGGAATAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
96 14 0.19
97 36 0.49
98 4 0.05
99 19 0.26
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.29
Consensus pattern (98 bp):
AGAAATAAAAATAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAAAAATTCAAAACAAGAAAA
TATTTCTAAATTGACCCAAATGGTGAAAAATTT
Found at i:7060810 original size:91 final size:94
Alignment explanation
Indices: 7060636--7060824 Score: 267
Period size: 91 Copynumber: 2.0 Consensus size: 94
7060626 AATAAAGGAG
* * * * *
7060636 ATAAAATTTTAATAACAAATAAATAAACAAATAAATATAGTTTTCAACGTCAAATTCAAGCAAGA
1 ATAAAATTTCAATAACAAAT-AAT-AACAAATAAATAAAGTTTCCAACGTCAAAATCAAGCAACA
*
7060701 CATAGTGAAAGTGAAAGGATAAAGAAAATGC
64 CATAGTGAAAATGAAAGGATAAAGAAAATGC
*
7060732 ATAAAATTTCAATAACAAAT-AT-ATAAATAAATAAAGTTTCCAAC-TCAAAATCAAGCAACACA
1 ATAAAATTTCAATAACAAATAATAACAAATAAATAAAGTTTCCAACGTCAAAATCAAGCAACACA
*
7060794 TAGTGAAAATGAAAGGATAAAGGAAATGC
66 TAGTGAAAATGAAAGGATAAAGAAAATGC
7060823 AT
1 AT
7060825 TGAGTTTAAG
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
91 45 0.53
92 19 0.22
94 2 0.02
96 19 0.22
ACGTcount: A:0.54, C:0.11, G:0.12, T:0.23
Consensus pattern (94 bp):
ATAAAATTTCAATAACAAATAATAACAAATAAATAAAGTTTCCAACGTCAAAATCAAGCAACACA
TAGTGAAAATGAAAGGATAAAGAAAATGC
Found at i:7060929 original size:4 final size:4
Alignment explanation
Indices: 7060920--7060952 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
7060910 TTTCAATAAC
7060920 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
7060953 TAGTAGTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:7061185 original size:88 final size:88
Alignment explanation
Indices: 7061046--7061291 Score: 379
Period size: 88 Copynumber: 2.8 Consensus size: 88
7061036 AATAACAAAT
7061046 AAATAAATAAATATAGTTTTCAAC-TGCAAATTGAAGCAACTCATAGTGAAAGTGAAAGGATAAA
1 AAATAAATAAATATAGTTTTCAACGT-CAAATTGAAGCAACTCATAGTGAAAGTGAAAGGATAAA
*
7061110 GAAAATATATAAAATTTTAGCAAC
65 GAAAATATATAAAATTTCAGCAAC
*
7061134 AAATAAATAAATATAGTTTTCAACGTCAAATTGAAGCAACTCATAGCGAAAGTGAAAGGATAAAG
1 AAATAAATAAATATAGTTTTCAACGTCAAATTGAAGCAACTCATAGTGAAAGTGAAAGGATAAAG
7061199 AAAATATATAAAATTTCAGCAAC
66 AAAATATATAAAATTTCAGCAAC
* * * * * * *
7061222 AAACAAATAAATAAAGTTTGCAATGTCAAAATCG-AGCAACACATAGTGAAAGTGAAAGAATAAA
1 AAATAAATAAATATAGTTTTCAACGTC-AAATTGAAGCAACTCATAGTGAAAGTGAAAGGATAAA
7061286 GAAAAT
65 GAAAAT
7061292 GCATTGAAAT
Statistics
Matches: 146, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
88 140 0.96
89 6 0.04
ACGTcount: A:0.52, C:0.10, G:0.14, T:0.23
Consensus pattern (88 bp):
AAATAAATAAATATAGTTTTCAACGTCAAATTGAAGCAACTCATAGTGAAAGTGAAAGGATAAAG
AAAATATATAAAATTTCAGCAAC
Found at i:7061580 original size:92 final size:88
Alignment explanation
Indices: 7061400--7061570 Score: 243
Period size: 92 Copynumber: 1.9 Consensus size: 88
7061390 AACATAACTT
* *
7061400 TAAAATTTCAATAACAAATAAATAAATAAAGCTTCCAATGTCAAATTCAAGCAACACATAGTGAA
1 TAAAATTTCAATAACAAATAAATAAATAAAGCTTCCAACGTCAAAATCAAGCAACACATAGTGAA
* *
7061465 AGTGAAAGGATAAAGAAAATGCA
66 AGCGAAAAGATAAAGAAAATGCA
* * *
7061488 TAAAATTTCAATGACAAATAAATAAATAAATTTAGTTTCCAGCGTCAAAATCAAGCAACACATAG
1 TAAAATTTCAATAACAAATAAATAAAT-AA---AGCTTCCAACGTCAAAATCAAGCAACACATAG
7061553 TGAAAGCGAAAAGATAAA
62 TGAAAGCGAAAAGATAAA
7061571 AGGAATGCAT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
88 26 0.36
89 2 0.03
92 44 0.61
ACGTcount: A:0.53, C:0.13, G:0.12, T:0.22
Consensus pattern (88 bp):
TAAAATTTCAATAACAAATAAATAAATAAAGCTTCCAACGTCAAAATCAAGCAACACATAGTGAA
AGCGAAAAGATAAAGAAAATGCA
Found at i:7061792 original size:285 final size:289
Alignment explanation
Indices: 7061134--7062335 Score: 1242
Period size: 285 Copynumber: 4.2 Consensus size: 289
7061124 TTTTAGCAAC
* * * *
7061134 AAATAAATAAATATAGTTTTCAACGTCAAATTGAAGCAACTCATAGCGAAAGTGAAAGGATAAAG
1 AAATAAATAAATATAGTTTCCAACGTCAAATTCAAGCAACACATAGTGAAAGTGAAAGGATAAAG
** * * * *
7061199 AAAAT-ATATAAAATTTCAGCAACAAACAAATAAAT--A-A-AGTTTGCAATGTCAAAATCGAGC
66 AAAATGA-ATAAAATTTCAATAACAAATAAATAAATAAATATAGTTTCCAACGTCAAAATCAAGC
* * *
7061259 AACACATAGTGAAAGTG-AAAGAATAAAGAAAATGCATTGAAATTCAACAAAGGAGAAATCTAGG
130 AACACATAGTGAAAATGAAAAG-ATAAAGAAAATGCATTGAAATTCAACAAGGGAGAAATCTAGC
* * * ** *
7061323 GTGTAATGTTTTTTTCAG-CTAGGTAAGTAGTA-GGATAG-GAAATTTAAGAGTAAATTACGATT
194 GTGTAATG--TTCTTCAGTC-AGGTAAGTAATAGGGTTAGAG-TGTTTAAGAGTAAATTAAGATT
7061385 TCAAAAACATAACTTTAAAATTTCAATAAC----AAAT
255 T-AAAAA-A-AACTTTAAAATTTCAATAACAAATAAAT
* *
7061419 AAATAAAT--A-A-AGCTTCCAATGTCAAATTCAAGCAACACATAGTGAAAGTGAAAGGATAAAG
1 AAATAAATAAATATAGTTTCCAACGTCAAATTCAAGCAACACATAGTGAAAGTGAAAGGATAAAG
* * * *
7061480 AAAATGCATAAAATTTCAATGACAAATAAATAAATAAATTTAGTTTCCAGCGTCAAAATCAAGCA
66 AAAATGAATAAAATTTCAATAACAAATAAATAAATAAATATAGTTTCCAACGTCAAAATCAAGCA
** * * *
7061545 ACACATAGTGAAAGCGAAAAGATAAA-AGGAATGCATTGAAATTTAACAAGGGAGAAATTTAGCG
131 ACACATAGTGAAAATGAAAAGATAAAGA-AAATGCATTGAAATTCAACAAGGGAGAAATCTAGCG
* * *
7061609 CGTAATG-TCCTCAGTCAGATAAGTAATAGGGTTAGAGTGTTTAAGAGTAAATTAAGATTT-AAA
195 TGTAATGTTCTTCAGTCAGGTAAGTAATAGGGTTAGAGTGTTTAAGAGTAAATTAAGATTTAAAA
7061672 AAAA-TTTAAAATTTCAATAACAAATAAAT
260 AAAACTTTAAAATTTCAATAACAAATAAAT
* *
7061701 AAATAAATAAATATAGTTTCCAACGTCAAATTCAAGCAACACGTAATGAAAGTGAAAGGATAAAG
1 AAATAAATAAATATAGTTTCCAACGTCAAATTCAAGCAACACATAGTGAAAGTGAAAGGATAAAG
* * * *
7061766 AAAATGAATAAAA-TGCAATAACAAATAAATAAATAAATATAGTTTTCAACTTCAAAATCGAGCA
66 AAAATGAATAAAATTTCAATAACAAATAAATAAATAAATATAGTTTCCAACGTCAAAATCAAGCA
* * *
7061830 ACACATAGTGAAAATGAAAGGATAAAGAAAATGCATTGAAATTCATCAAGGAAGAAATCTA----
131 ACACATAGTGAAAATGAAAAGATAAAGAAAATGCATTGAAATTCAACAAGGGAGAAATCTAGCGT
* * *
7061891 GTAA-G----T-AGTAAGGT-AG--A-GGGGTTTAAGAGTAGTTT---AG--AA-TCA-A---AA
196 GTAATGTTCTTCAGTCAGGTAAGTAATAGGG-TT-AGAGT-GTTTAAGAGTAAATTAAGATTTAA
7061936 AAAAAACTTTAAAATTTCAATAACAAATAAAT
258 AAAAAACTTTAAAATTTCAATAACAAATAAAT
** * *
7061968 AAATATGTAAATATAGTTTCCAACGCCAAATTCAAGCAACACATAGTAAAAGTGAAAGGATAAAG
1 AAATAAATAAATATAGTTTCCAACGTCAAATTCAAGCAACACATAGTGAAAGTGAAAGGATAAAG
* * *
7062033 AAAATGCATAAAAATTTCAATAACAAATAGATAAATAAATAAATATAGTTTCCAACATCAACATC
66 AAAATGAAT-AAAATTTCAATAAC--A-A-ATAAATAAATAAATATAGTTTCCAACGTCAAAATC
* * *
7062098 AAGCAACACATAGTGAAAATGAAAGGATAAAGAAAATGCA-TGAAATTCAAAAAGGGAGAAATTT
126 AAGCAACACATAGTGAAAATGAAAAGATAAAGAAAATGCATTGAAATTCAACAAGGGAGAAATCT
* * * * * * *
7062162 AGCATGTAATGTTTTCTTCAATCAGGTAAGTAGTAAGG-TAGAGGGTTTAAGAGTAGATTATGAT
191 AGCGTGTAATG--TTCTTCAGTCAGGTAAGTAATAGGGTTAGAGTGTTTAAGAGTAAATTAAGAT
*
7062226 TTAAAAAAAA-ATTAAAATTTCAATAACAAATAAAT
254 TTAAAAAAAACTTTAAAATTTCAATAACAAATAAAT
** * *
7062261 AAATAAATCAATAAATATAGTTTCCAATATCAAATTCAAGCAACACATAATGAGAGTGAAAGGAT
1 AAAT--A--AATAAATATAGTTTCCAACGTCAAATTCAAGCAACACATAGTGAAAGTGAAAGGAT
7062326 AAAGAAAATG
62 AAAGAAAATG
7062336 CTTTGAAATC
Statistics
Matches: 768, Mismatches: 89, Indels: 108
0.80 0.09 0.11
Matches are distributed among these distances:
266 7 0.01
267 92 0.12
268 5 0.01
269 10 0.01
270 2 0.00
271 1 0.00
272 27 0.04
273 74 0.10
274 5 0.01
275 6 0.01
276 10 0.01
277 2 0.00
278 17 0.02
279 2 0.00
280 2 0.00
281 82 0.11
282 28 0.04
283 29 0.04
284 13 0.02
285 187 0.24
286 65 0.08
287 2 0.00
288 2 0.00
289 1 0.00
290 1 0.00
291 1 0.00
293 28 0.04
294 8 0.01
295 1 0.00
297 58 0.08
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (289 bp):
AAATAAATAAATATAGTTTCCAACGTCAAATTCAAGCAACACATAGTGAAAGTGAAAGGATAAAG
AAAATGAATAAAATTTCAATAACAAATAAATAAATAAATATAGTTTCCAACGTCAAAATCAAGCA
ACACATAGTGAAAATGAAAAGATAAAGAAAATGCATTGAAATTCAACAAGGGAGAAATCTAGCGT
GTAATGTTCTTCAGTCAGGTAAGTAATAGGGTTAGAGTGTTTAAGAGTAAATTAAGATTTAAAAA
AAACTTTAAAATTTCAATAACAAATAAAT
Found at i:7061830 original size:91 final size:91
Alignment explanation
Indices: 7061697--7061862 Score: 269
Period size: 91 Copynumber: 1.8 Consensus size: 91
7061687 AATAACAAAT
* * *
7061697 AAATAAATAAATAAATATAGTTTCCAACGTCAAATTCAAGCAACACGTAATGAAAGTGAAAGGAT
1 AAATAAATAAATAAATATAGTTTCCAACGTCAAAATCAAGCAACACATAATGAAAATGAAAGGAT
7061762 AAAGAAAATGAATAAAATGCAATAAC
66 AAAGAAAATGAATAAAATGCAATAAC
* * * *
7061788 AAATAAATAAATAAATATAGTTTTCAACTTCAAAATCGAGCAACACATAGTGAAAATGAAAGGAT
1 AAATAAATAAATAAATATAGTTTCCAACGTCAAAATCAAGCAACACATAATGAAAATGAAAGGAT
7061853 AAAGAAAATG
66 AAAGAAAATG
7061863 CATTGAAATT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 68 1.00
ACGTcount: A:0.55, C:0.10, G:0.13, T:0.22
Consensus pattern (91 bp):
AAATAAATAAATAAATATAGTTTCCAACGTCAAAATCAAGCAACACATAATGAAAATGAAAGGAT
AAAGAAAATGAATAAAATGCAATAAC
Found at i:7062121 original size:97 final size:97
Alignment explanation
Indices: 7061946--7062138 Score: 309
Period size: 97 Copynumber: 2.0 Consensus size: 97
7061936 AAAAAACTTT
** *
7061946 AAAATTTCAATAACAAATAAATAAATATGTAAATATAGTTTCCAACGCCAAATTCAAGCAACACA
1 AAAATTTCAATAACAAATAAATAAATAAATAAATATAGTTTCCAACACCAAATTCAAGCAACACA
7062011 TAGTAAAAGTGAAAGGATAAAGAAAATGCATA
66 TAGTAAAAGTGAAAGGATAAAGAAAATGCATA
* *
7062043 AAAATTTCAATAACAAATAGATAAATAAATAAATATAGTTTCCAACATCAACA-TCAAGCAACAC
1 AAAATTTCAATAACAAATAAATAAATAAATAAATATAGTTTCCAACACCAA-ATTCAAGCAACAC
7062107 ATAGTGAAAA-TGAAAGGATAAAGAAAATGCAT
65 ATAGT-AAAAGTGAAAGGATAAAGAAAATGCAT
7062139 GAAATTCAAA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
97 84 0.94
98 5 0.06
ACGTcount: A:0.54, C:0.12, G:0.11, T:0.22
Consensus pattern (97 bp):
AAAATTTCAATAACAAATAAATAAATAAATAAATATAGTTTCCAACACCAAATTCAAGCAACACA
TAGTAAAAGTGAAAGGATAAAGAAAATGCATA
Found at i:7062590 original size:184 final size:184
Alignment explanation
Indices: 7062270--7062612 Score: 533
Period size: 184 Copynumber: 1.9 Consensus size: 184
7062260 TAAATAAATC
* * * *
7062270 AATAAATATAGTTTCCAATATCAAATTCAAGCAACACATAATGAGAGTGAAAGGATAAAGAAAAT
1 AATAAATATAGTTTCCAACATCAAATTCAAGCAACACATAATGAAAGTGAAAAGAGAAAGAAAAT
* * ** ** *
7062335 GCTTTGAAATCCAACAAGAGAGAAATCTAGTGTAAATCTTTCATTGGAAATATATTTCGGTTTTC
66 GCATTGAAATCCAACAAGAGAGAAATCTAGTGTAAATCTTTCATTGGAAATACATTTAAGTCATA
*
7062400 TTTGGTATACAAGATTATGATATGATAAGATAAGATGAGATTATGAATATGACA
131 TTTGGTATACAAGATTATGATAAGATAAGATAAGATGAGATTATGAATATGACA
*
7062454 AATAAATATAGTTTCCAACATCAAATTCAAGCAACACATAATGAAAGTGAAAAGAGAAAGACAAT
1 AATAAATATAGTTTCCAACATCAAATTCAAGCAACACATAATGAAAGTGAAAAGAGAAAGAAAAT
* * * *
7062519 GCATTGAAATTCAACAAGGGAGAAATCTAGTGTAAATCTTTTATTGGAAATGCATTTAAGTCATA
66 GCATTGAAATCCAACAAGAGAGAAATCTAGTGTAAATCTTTCATTGGAAATACATTTAAGTCATA
7062584 TTTGGTATACAAGATTATGATAAGATAAG
131 TTTGGTATACAAGATTATGATAAGATAAG
7062613 GTAATATTAT
Statistics
Matches: 142, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
184 142 1.00
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29
Consensus pattern (184 bp):
AATAAATATAGTTTCCAACATCAAATTCAAGCAACACATAATGAAAGTGAAAAGAGAAAGAAAAT
GCATTGAAATCCAACAAGAGAGAAATCTAGTGTAAATCTTTCATTGGAAATACATTTAAGTCATA
TTTGGTATACAAGATTATGATAAGATAAGATAAGATGAGATTATGAATATGACA
Found at i:7066046 original size:24 final size:23
Alignment explanation
Indices: 7066015--7066059 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
7066005 AGATTTGACC
7066015 AAAAAAATCAAAAACCAAAGTCT
1 AAAAAAATCAAAAACCAAAGTCT
* *
7066038 AAAACAAATCCAAATCCAAAGT
1 AAAA-AAATCAAAAACCAAAGT
7066060 GTCTCAAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.62, C:0.20, G:0.04, T:0.13
Consensus pattern (23 bp):
AAAAAAATCAAAAACCAAAGTCT
Found at i:7077659 original size:8 final size:8
Alignment explanation
Indices: 7077646--7077685 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
7077636 TACTAGATGA
7077646 AATAAAAT
1 AATAAAAT
7077654 AATAAAAT
1 AATAAAAT
7077662 AATAAAA-
1 AATAAAAT
*
7077669 AATTAAA-
1 AATAAAAT
7077676 AATAAAAT
1 AATAAAAT
7077684 AA
1 AA
7077686 AACTTAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 12 0.41
8 17 0.59
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AATAAAAT
Found at i:7077677 original size:17 final size:18
Alignment explanation
Indices: 7077657--7077706 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 18
7077647 ATAAAATAAT
7077657 AAAATAATAA-AAAA-TTA
1 AAAATAA-AATAAAACTTA
7077674 AAAATAAAATAAAACTTA
1 AAAATAAAATAAAACTTA
7077692 AAATATGAAAATAAA
1 AAA-AT-AAAATAAA
7077707 TGAAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.07
17 11 0.38
18 6 0.21
19 2 0.07
20 8 0.28
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (18 bp):
AAAATAAAATAAAACTTA
Found at i:7077686 original size:19 final size:21
Alignment explanation
Indices: 7077662--7077706 Score: 60
Period size: 18 Copynumber: 2.3 Consensus size: 21
7077652 ATAATAAAAT
7077662 AATAAAAAATTAAAA-AT-AA
1 AATAAAAAATTAAAATATGAA
*
7077681 AAT-AAAACTTAAAATATGAA
1 AATAAAAAATTAAAATATGAA
7077701 AATAAA
1 AATAAA
7077707 TGAAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 10 0.45
19 5 0.23
20 5 0.23
21 2 0.09
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (21 bp):
AATAAAAAATTAAAATATGAA
Done.