Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 35 of 147
Found at i:7219365 original size:1 final size:1
Alignment explanation
Indices: 7219321--7219345 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
7219311 GTTTTTTTCG
7219321 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
7219346 GAGATCTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:7223180 original size:316 final size:313
Alignment explanation
Indices: 7222605--7223204 Score: 1101
Period size: 316 Copynumber: 1.9 Consensus size: 313
7222595 TAGTTGTTGG
7222605 AAATGATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
1 AAATGATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
* *
7222670 TATGCAAGAAGAACTACTGTTTCACTTGCAGAGGCTCCATCGTCGGATTATTTAAAGAAAAATCA
66 TATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCATCGTCGGATTAATTAAAGAAAAATCA
7222735 AGATCAACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAA
131 AGATCAACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAA
7222800 TTGAGAAAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCTACTTGTAGAGGCTCC
196 TTGAGAAAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCTACTTGTAGAGGCTCC
*
7222865 GTCGTCGGATTATTTAAAGAAAAATCAAGATCAACCAATTAATTAATTATCGA
261 GTCGTCGGATTAATTAAAGAAAAATCAAGATCAACCAATTAATTAATTATCGA
*
7222918 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
1 AAATGATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
* * *
7222983 TATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAAA
66 TATGCAAGAAAAACTACTG-TTTCACTTGCAGAGGCTCCATCGTCGGATTAATTAAAG--AAAAA
7223048 TCAAGATCAACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGA
128 TCAAGATCAACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGA
*
7223113 AAATTGAGAAAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGC
193 AAATTGAGAAAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCTACTTGTAGAGGC
7223178 TCCGTCGTCGGATTAATTAAAGAAAAA
258 TCCGTCGTCGGATTAATTAAAGAAAAA
7223205 AAAAATCAAG
Statistics
Matches: 276, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
313 82 0.30
314 34 0.12
316 160 0.58
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (313 bp):
AAATGATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
TATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCATCGTCGGATTAATTAAAGAAAAATCA
AGATCAACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAA
TTGAGAAAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCTACTTGTAGAGGCTCC
GTCGTCGGATTAATTAAAGAAAAATCAAGATCAACCAATTAATTAATTATCGA
Found at i:7223206 original size:159 final size:157
Alignment explanation
Indices: 7222605--7223204 Score: 1103
Period size: 157 Copynumber: 3.8 Consensus size: 157
7222595 TAGTTGTTGG
*
7222605 AAATGATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
1 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
* * * * *
7222670 TATGCAAGAAGAACTACTG-TTTCACTTGCAGAGGCTCCATCGTCGGATTATTTAAAGAAAAATC
66 TATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAATC
7222734 AAGATCAACCAATTAATTAATTATCGA
131 AAGATCAACCAATTAATTAATTATCGA
7222761 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
1 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
* *
7222826 TATGCAAGAAAAACTACTGTTTCTACTTGTAGAGGCTCCGTCGTCGGATTATTTAAAGAAAAATC
66 TATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAATC
7222891 AAGATCAACCAATTAATTAATTATCGA
131 AAGATCAACCAATTAATTAATTATCGA
7222918 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
1 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
7222983 TATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAAA
66 TATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAG--AAAAA
7223048 TCAAGATCAACCAATTAATTAATTATCGA
129 TCAAGATCAACCAATTAATTAATTATCGA
7223077 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
1 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
7223142 TATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAA
66 TATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAA
7223205 AAAAATCAAG
Statistics
Matches: 433, Mismatches: 8, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
156 82 0.19
157 194 0.45
159 157 0.36
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (157 bp):
AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
TATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAATC
AAGATCAACCAATTAATTAATTATCGA
Found at i:7223258 original size:16 final size:16
Alignment explanation
Indices: 7223228--7223258 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7223218 AAAATCAAAG
*
7223228 TCAAATAAAAAAAAAT
1 TCAAAAAAAAAAAAAT
7223244 TCAAAAAAAAAAAAA
1 TCAAAAAAAAAAAAA
7223259 AAAAAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (16 bp):
TCAAAAAAAAAAAAAT
Found at i:7223672 original size:19 final size:20
Alignment explanation
Indices: 7223638--7223680 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
7223628 CGGAAATTCA
7223638 CCGGTTTCTGGGATTCTTCG
1 CCGGTTTCTGGGATTCTTCG
7223658 CCGGTTTCT-GGATTCTTCG
1 CCGGTTTCTGGGATTCTTCG
7223677 CCGG
1 CCGG
7223681 AAACTGGGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.05, C:0.28, G:0.30, T:0.37
Consensus pattern (20 bp):
CCGGTTTCTGGGATTCTTCG
Found at i:7223687 original size:19 final size:19
Alignment explanation
Indices: 7223648--7223687 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7223638 CCGGTTTCTG
***
7223648 GGATTCTTCGCCGGTTTCT
1 GGATTCTTCGCCGGAAACT
7223667 GGATTCTTCGCCGGAAACT
1 GGATTCTTCGCCGGAAACT
7223686 GG
1 GG
7223688 GCAGGTCGCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.12, C:0.25, G:0.30, T:0.33
Consensus pattern (19 bp):
GGATTCTTCGCCGGAAACT
Found at i:7223731 original size:31 final size:31
Alignment explanation
Indices: 7223693--7223751 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
7223683 ACTGGGCAGG
*
7223693 TCGCCGGAAACTTCAATGTTGGCCGGAATTT
1 TCGCCGGAAACTTCAAGGTTGGCCGGAATTT
7223724 TCGCCGGAAACTTCAAGGTTGGCCGGAA
1 TCGCCGGAAACTTCAAGGTTGGCCGGAA
7223752 AATCCAACCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (31 bp):
TCGCCGGAAACTTCAAGGTTGGCCGGAATTT
Found at i:7224147 original size:31 final size:30
Alignment explanation
Indices: 7224099--7224200 Score: 84
Period size: 31 Copynumber: 3.3 Consensus size: 30
7224089 AAAAAAAATC
* *
7224099 AAAT-AAAAATAATAGATA-ATTAGAACAGAT
1 AAATAAAAAAAAACAGATATATTA-AA-AGAT
* *
7224129 AAATAAAAAAAAACAGATATATTATAGGAT
1 AAATAAAAAAAAACAGATATATTAAAAGAT
*
7224159 AAATAAAAAAAAATAACAGATATA-TAATTAGAT
1 AAAT--AAAAAAA-AACAGATATATTAA-AAGAT
7224192 AAATAAAAA
1 AAATAAAAA
7224201 TACAAAAATA
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
30 11 0.19
31 18 0.31
32 13 0.22
33 17 0.29
ACGTcount: A:0.67, C:0.03, G:0.08, T:0.23
Consensus pattern (30 bp):
AAATAAAAAAAAACAGATATATTAAAAGAT
Found at i:7224170 original size:33 final size:33
Alignment explanation
Indices: 7224114--7224200 Score: 106
Period size: 33 Copynumber: 2.6 Consensus size: 33
7224104 AAAATAATAG
7224114 ATAATTAGA-ACAGATAAATAAAAAAAAACAGATAT
1 ATAATTAGATA-A-ATAAA-AAAAAAAAACAGATAT
* *
7224149 ATTA-TAGGATAAATAAAAAAAAATAACAGATAT
1 ATAATTA-GATAAATAAAAAAAAAAAACAGATAT
7224182 ATAATTAGATAAATAAAAA
1 ATAATTAGATAAATAAAAA
7224201 TACAAAAATA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
33 30 0.65
34 9 0.20
35 6 0.13
36 1 0.02
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.23
Consensus pattern (33 bp):
ATAATTAGATAAATAAAAAAAAAAAACAGATAT
Found at i:7224213 original size:12 final size:12
Alignment explanation
Indices: 7224192--7224249 Score: 61
Period size: 12 Copynumber: 5.0 Consensus size: 12
7224182 ATAATTAGAT
7224192 AAATAA-AAATA
1 AAATAATAAATA
7224203 CAAA-AATAAATA
1 -AAATAATAAATA
7224215 AAATAA-AAATAA
1 AAATAATAAAT-A
7224227 AAATAAT-AATA
1 AAATAATAAATA
*
7224238 TAATAATAAATA
1 AAATAATAAATA
7224250 TATAACTATA
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
11 16 0.40
12 24 0.60
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (12 bp):
AAATAATAAATA
Found at i:7224218 original size:23 final size:25
Alignment explanation
Indices: 7224157--7224247 Score: 82
Period size: 23 Copynumber: 3.6 Consensus size: 25
7224147 ATATTATAGG
*
7224157 ATAA-ATAAAA-AAAAATAACAGATA
1 ATAATATAAAATAAAAATAA-AAATA
* *
7224181 TATAATTAGATAAATAAAAATACAAA-A
1 -ATAA-TATA-AAATAAAAATAAAAATA
7224208 ATAA-ATAAAATAAAAATAAAAATA
1 ATAATATAAAATAAAAATAAAAATA
7224232 ATAATATAATAATAAA
1 ATAATATAA-AATAAA
7224248 TATATAACTA
Statistics
Matches: 54, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
23 14 0.26
24 7 0.13
25 8 0.15
26 10 0.19
27 3 0.06
28 5 0.09
29 7 0.13
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (25 bp):
ATAATATAAAATAAAAATAAAAATA
Found at i:7224225 original size:6 final size:6
Alignment explanation
Indices: 7224192--7224247 Score: 53
Period size: 6 Copynumber: 9.2 Consensus size: 6
7224182 ATAATTAGAT
*
7224192 AAATAA AAATACA AAA-AT AAAT-A AAATAA AAATAA AAATAA TAATATAA
1 AAATAA AAATA-A AAATAA AAATAA AAATAA AAATAA AAATAA -AA-ATAA
*
7224241 TAATAA A
1 AAATAA A
7224248 TATATAACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 7 0.17
6 23 0.56
7 7 0.17
8 4 0.10
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (6 bp):
AAATAA
Found at i:7224446 original size:20 final size:20
Alignment explanation
Indices: 7224424--7224488 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
7224414 TTGCCCATTT
* *
7224424 GGGCCAGGCCCAAATGATCT
1 GGGCCAGGCCCAATTGATCC
*
7224444 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
*
7224464 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
7224484 GGGCC
1 GGGCC
7224489 CGGACCTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (20 bp):
GGGCCAGGCCCAATTGATCC
Found at i:7225847 original size:17 final size:17
Alignment explanation
Indices: 7225825--7225887 Score: 90
Period size: 17 Copynumber: 3.7 Consensus size: 17
7225815 CACTAAAATA
*
7225825 TCACAATTTCAAACAAT
1 TCACAACTTCAAACAAT
*
7225842 TCACAACTTAAAACAAT
1 TCACAACTTCAAACAAT
* *
7225859 TAACAATTTCAAACAAT
1 TCACAACTTCAAACAAT
7225876 TCACAACTTCAA
1 TCACAACTTCAA
7225888 CCACAATTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 39 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (17 bp):
TCACAACTTCAAACAAT
Found at i:7226649 original size:16 final size:16
Alignment explanation
Indices: 7226628--7226658 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7226618 GCTACCAGTG
7226628 TTAAACTTTTGTATTA
1 TTAAACTTTTGTATTA
*
7226644 TTAAACTTTTTTATT
1 TTAAACTTTTGTATT
7226659 GATTGACCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.61
Consensus pattern (16 bp):
TTAAACTTTTGTATTA
Found at i:7227179 original size:24 final size:24
Alignment explanation
Indices: 7227134--7227183 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
7227124 AAATGATAGT
*
7227134 ATTTCAATAATTAGTAATATATAA
1 ATTTCAATAACTAGTAATATATAA
*
7227158 ATTTCAATAAACTATTAAATATATAA
1 ATTTCAAT-AACTAGT-AATATATAA
7227184 GCTTTTTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.36
25 5 0.23
26 9 0.41
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (24 bp):
ATTTCAATAACTAGTAATATATAA
Found at i:7227968 original size:33 final size:32
Alignment explanation
Indices: 7227909--7228010 Score: 106
Period size: 33 Copynumber: 3.3 Consensus size: 32
7227899 ATATATTACC
* **
7227909 AACAAATTTTAACAAATATATGACCAAAACCTA
1 AACAAATTTTAACAAACATAAAACCAAAACC-A
7227942 AACAAATTTTAACAAACATAAAACC--AA-C-
1 AACAAATTTTAACAAACATAAAACCAAAACCA
*
7227970 AA-AAATTTCAACAAACATAAAACCAAAACCCA
1 AACAAATTTTAACAAACATAAAACCAAAA-CCA
*
7228002 AATAAATTT
1 AACAAATTT
7228011 CATAAAATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
27 21 0.36
28 2 0.03
29 2 0.03
30 1 0.02
31 3 0.05
32 2 0.03
33 28 0.47
ACGTcount: A:0.59, C:0.20, G:0.01, T:0.21
Consensus pattern (32 bp):
AACAAATTTTAACAAACATAAAACCAAAACCA
Found at i:7229791 original size:22 final size:21
Alignment explanation
Indices: 7229741--7229795 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
7229731 TATATCATAA
* *
7229741 ATTACTAAAATTATATGAAAG
1 ATTACCAAAATTACATGAAAG
* *
7229762 GTTACCAAAATTACATTGAGAG
1 ATTACCAAAATTACA-TGAAAG
7229784 ATTACCAAAATT
1 ATTACCAAAATT
7229796 TTACCAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 12 0.43
22 16 0.57
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (21 bp):
ATTACCAAAATTACATGAAAG
Found at i:7229909 original size:42 final size:42
Alignment explanation
Indices: 7229785--7229912 Score: 109
Period size: 42 Copynumber: 3.1 Consensus size: 42
7229775 CATTGAGAGA
* ** ** *
7229785 TTACCAAAATTTTACCAAAAATTATCGAAATTGTATC-AATGG
1 TTACCAAAATTATATAAAAAATTATTAAAATTCTATCAAAT-G
* * * *
7229827 TTA-AAAAATTATATAATAAATTA-TCAAATTACTATTAAATG
1 TTACCAAAATTATATAAAAAATTATTAAAATT-CTATCAAATG
* *
7229868 TTACCAAAATTGTATAAAAAATTATTAAAATTTTATCAAATG
1 TTACCAAAATTATATAAAAAATTATTAAAATTCTATCAAATG
7229910 TTA
1 TTA
7229913 TAAAACTTTT
Statistics
Matches: 67, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
40 5 0.07
41 22 0.33
42 34 0.51
43 6 0.09
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.38
Consensus pattern (42 bp):
TTACCAAAATTATATAAAAAATTATTAAAATTCTATCAAATG
Found at i:7234256 original size:8 final size:8
Alignment explanation
Indices: 7234243--7234371 Score: 137
Period size: 8 Copynumber: 16.8 Consensus size: 8
7234233 AGTGAGGGGA
*
7234243 ATTTTTTC
1 ATTTTTTG
*
7234251 ATTTTTTC
1 ATTTTTTG
*
7234259 A-TTTTTC
1 ATTTTTTG
*
7234266 CTT-TTTG
1 ATTTTTTG
*
7234273 TATTTTGT-
1 -ATTTTTTG
7234281 ATTT-TTG
1 ATTTTTTG
7234288 ATTTTTTG
1 ATTTTTTG
7234296 ATTTTTTG
1 ATTTTTTG
7234304 ATTTTTTG
1 ATTTTTTG
7234312 ATTTTTTG
1 ATTTTTTG
7234320 ATTTTTTG
1 ATTTTTTG
7234328 ATTTTTTG
1 ATTTTTTG
7234336 ATTTTTTG
1 ATTTTTTG
*
7234344 -TATTTTG
1 ATTTTTTG
7234351 -TATTTTTG
1 AT-TTTTTG
7234359 A-TTTTTG
1 ATTTTTTG
7234366 ATTTTT
1 ATTTTT
7234372 ATTAATTTTT
Statistics
Matches: 106, Mismatches: 7, Indels: 16
0.82 0.05 0.12
Matches are distributed among these distances:
6 1 0.01
7 31 0.29
8 72 0.68
9 2 0.02
ACGTcount: A:0.12, C:0.03, G:0.10, T:0.74
Consensus pattern (8 bp):
ATTTTTTG
Found at i:7235529 original size:26 final size:28
Alignment explanation
Indices: 7235471--7235529 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
7235461 AGATAGCGTT
7235471 TATTAGCGAAATATTATCTATACATTTTC
1 TATTAGCGAAATATTATC-ATACATTTTC
7235500 TATTAGCGAAATATTATC-T-CATTTTC
1 TATTAGCGAAATATTATCATACATTTTC
7235526 TATT
1 TATT
7235530 TTTTAAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 11 0.37
27 1 0.03
29 18 0.60
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.47
Consensus pattern (28 bp):
TATTAGCGAAATATTATCATACATTTTC
Found at i:7236025 original size:29 final size:29
Alignment explanation
Indices: 7235989--7236050 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
7235979 CATTAAAAGT
7235989 AAAATTTTAAATGCATTAAACTAATATGA
1 AAAATTTTAAATGCATTAAACTAATATGA
*
7236018 AAAATTTTAAATGTATTAAACTAATATGA
1 AAAATTTTAAATGCATTAAACTAATATGA
7236047 AAAA
1 AAAA
7236051 ATATACTCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (29 bp):
AAAATTTTAAATGCATTAAACTAATATGA
Found at i:7237927 original size:27 final size:27
Alignment explanation
Indices: 7237887--7237942 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
7237877 AAGTAAGATG
* *
7237887 ATATTATTTAATCTAATTCTATTCATA
1 ATATCATTTAATCTAATCCTATTCATA
* *
7237914 ATATCATTTTATCTTATCCTATTCATA
1 ATATCATTTAATCTAATCCTATTCATA
7237941 AT
1 AT
7237943 CTTGTATATC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (27 bp):
ATATCATTTAATCTAATCCTATTCATA
Found at i:7250976 original size:12 final size:12
Alignment explanation
Indices: 7250954--7251020 Score: 53
Period size: 14 Copynumber: 4.9 Consensus size: 12
7250944 GACTAAAATA
7250954 TTTTTAGTAATTT
1 TTTTTA-TAATTT
7250967 TTTTTATAATTT
1 TTTTTATAATTT
7250979 TTAATTTAAATGAATTT
1 TT--TTT--AT-AATTT
*
7250996 TTATTATTATATTT
1 TTTTTA-TA-ATTT
7251010 TTTTTATAATT
1 TTTTTATAATT
7251021 AGACTAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
12 11 0.24
13 10 0.22
14 13 0.29
15 2 0.04
16 2 0.04
17 7 0.16
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (12 bp):
TTTTTATAATTT
Found at i:7251443 original size:47 final size:44
Alignment explanation
Indices: 7251389--7251489 Score: 123
Period size: 47 Copynumber: 2.2 Consensus size: 44
7251379 CTATTAGTAA
*
7251389 TTTTTATAA-ATTTAATTTTAAATGATTTATTTTAATATTAAACTCT
1 TTTTTATAATATTTAA-TTTAAATGAATT-TTTTAATATTAAAC-CT
* * *
7251435 TTTGTTATAATTTTTAATTTAAATGAATTTTTTATTATTAGACCT
1 TTT-TTATAATATTTAATTTAAATGAATTTTTTAATATTAAACCT
7251480 TTTTTATAAT
1 TTTTTATAAT
7251490 TAGACTAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
44 7 0.14
45 5 0.10
46 15 0.31
47 17 0.35
48 5 0.10
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (44 bp):
TTTTTATAATATTTAATTTAAATGAATTTTTTAATATTAAACCT
Found at i:7251482 original size:17 final size:17
Alignment explanation
Indices: 7251462--7251494 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7251452 TTTAAATGAA
*
7251462 TTTTTTATTATTAGACC
1 TTTTTTATAATTAGACC
7251479 TTTTTTATAATTAGAC
1 TTTTTTATAATTAGAC
7251495 TAAAAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.09, G:0.06, T:0.58
Consensus pattern (17 bp):
TTTTTTATAATTAGACC
Found at i:7251752 original size:18 final size:18
Alignment explanation
Indices: 7251731--7251765 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7251721 TTTAATATAA
*
7251731 TTTTTTATTATTAGACTT
1 TTTTTTATAATTAGACTT
7251749 TTTTTTATAATTAGACT
1 TTTTTTATAATTAGACT
7251766 AAAAAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.63
Consensus pattern (18 bp):
TTTTTTATAATTAGACTT
Found at i:7251824 original size:464 final size:469
Alignment explanation
Indices: 7250965--7251888 Score: 1440
Period size: 464 Copynumber: 2.0 Consensus size: 469
7250955 TTTTAGTAAT
* * **
7250965 TTTTTTTATAATTTTTAATTTAAATGAATTTTTATTATTATATTTTTTTTATAATTAGACTAAAA
1 TTTTGTTATAATTTTTAATTTAAATGAATTTTTATTATTAGACCTTTTTTATAATTAGACTAAAA
* *
7251030 AATTACTAAAAATGATTGAGACAATTAATAGTGATGAATCTAAATACCTTTATAATAACAAATTT
66 AATTACTAAAAATGATTGAGACAATTAATAGTGATGAACCTAAAGACCTTTATAATAACAAATTT
* *
7251095 ATCCTTAAATATATAACTTTTATTAATATATTTAAATTTAATTTAAATAAACTAGAATTAAAATT
131 ATCCTTAAATATATAACTTTTATTAATATATTTAAATTCAATTTAAATAAACTAAAATTAAAATT
*
7251160 AAAGTTTATGAGAAATTAAACTAAAAATTTTAAAATTTTAATTTAAGTGTTAATAGTGATTAATA
196 AAAATTTATGAGAAATTAAACT---AATTTTAAAATTTTAATTTAAGTGTTAATAGTGATTAATA
* *
7251225 CGATATCTTTAGTACATTTTTAATAATTTTTAATTTAAATAAATTTTTTATTATTAGACTTTCCT
258 CAATATCTTTAGTAAATTTTTAATAATTTTTAATTTAAATAAATTTTTTATTATTAGACTTTCCT
*
7251290 TATAATTAGACTAAAAAATACTAAAAGTGATTCAGTAAACCCTTAATAAATTTTAATTTCAAAAA
323 TATAATTAGACTAAAAAATACTAAAAGTGATTCACTAAACCCTTAATAAATTTTAATTTCAAAAA
* *
7251355 TATTAAGAGTGATTGATTAAAATACTATTAGTAA-TTTTTATAAA-TTTAATTTTAAATGA-TTT
388 TATTAAAAGTGATTGATTAAAATACCATTAGTAATTTTTTATAAATTTTAATTTTAAATGATTTT
7251417 ATTTTAATATTAAACTC
453 ATTTTAATATTAAACTC
7251434 TTTTGTTATAATTTTTAATTTAAATGAATTTTTTATTATTAGACCTTTTTTATAATTAGACTAAA
1 TTTTGTTATAATTTTTAATTTAAATGAA-TTTTTATTATTAGACCTTTTTTATAATTAGACTAAA
** ***
7251499 AAATTACTAAACGTGATTGAGATTGTTAATAGTGATTG-ACCTAAAGACC-TTATAATAACAAAT
65 AAATTACTAAAAATGATTGAGACAATTAATAGTGA-TGAACCTAAAGACCTTTATAATAACAAAT
* *
7251562 TTATCCTTAAATATAT-ACTTTTATTAATTTATTTAAATTCAATTTAAATCAAC-AAAATTTAAA
129 TTATCCTTAAATATATAACTTTTATTAATATATTTAAATTCAATTTAAATAAACTAAAA-TTAAA
7251625 A-TAAAATTTATGAGAAATTAAACT-A-TTT-AAATTTTAATTTTAAGTGTTAATAGTGATTGAA
193 ATTAAAATTTATGAGAAATTAAACTAATTTTAAAATTTTAA-TTTAAGTGTTAATAGTGATT-AA
*
7251686 TACAATATCTTTAGTAAATTTTTTATAATTTTTAATTT-AATATAATTTTTTATTATTAGACTTT
256 TACAATATCTTTAGTAAATTTTTAATAATTTTTAATTTAAATA-AATTTTTTATTATTAGAC-TT
** * *
7251750 TTTTTATAATTAGACTAAAAAATATTAAAAGTGATTGACTAAACCCTTAATAAATTTTAATTTCA
319 TCCTTATAATTAGACTAAAAAATACTAAAAGTGATTCACTAAACCCTTAATAAATTTTAATTTCA
7251815 AAAATATTAAAAGTGATTGATTAAAATACCATTAGTAATTTTTTATAAATTTTAATTTTAAATGA
384 AAAATATTAAAAGTGATTGATTAAAATACCATTAGTAATTTTTTATAAATTTTAATTTTAAATGA
7251880 TTTTATTTT
449 TTTTATTTT
7251889 TTTTTAAATT
Statistics
Matches: 419, Mismatches: 26, Indels: 22
0.90 0.06 0.05
Matches are distributed among these distances:
461 9 0.02
462 27 0.06
463 56 0.13
464 98 0.23
465 10 0.02
466 15 0.04
467 33 0.08
468 40 0.10
469 57 0.14
470 72 0.17
471 2 0.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (469 bp):
TTTTGTTATAATTTTTAATTTAAATGAATTTTTATTATTAGACCTTTTTTATAATTAGACTAAAA
AATTACTAAAAATGATTGAGACAATTAATAGTGATGAACCTAAAGACCTTTATAATAACAAATTT
ATCCTTAAATATATAACTTTTATTAATATATTTAAATTCAATTTAAATAAACTAAAATTAAAATT
AAAATTTATGAGAAATTAAACTAATTTTAAAATTTTAATTTAAGTGTTAATAGTGATTAATACAA
TATCTTTAGTAAATTTTTAATAATTTTTAATTTAAATAAATTTTTTATTATTAGACTTTCCTTAT
AATTAGACTAAAAAATACTAAAAGTGATTCACTAAACCCTTAATAAATTTTAATTTCAAAAATAT
TAAAAGTGATTGATTAAAATACCATTAGTAATTTTTTATAAATTTTAATTTTAAATGATTTTATT
TTAATATTAAACTC
Found at i:7270374 original size:17 final size:17
Alignment explanation
Indices: 7270354--7270387 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7270344 TTTAAATAAA
*
7270354 TTTTTTATTATTAGACT
1 TTTTTTATAATTAGACT
7270371 TTTTTTATAATTAGACT
1 TTTTTTATAATTAGACT
7270388 AAAAAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (17 bp):
TTTTTTATAATTAGACT
Found at i:7270497 original size:478 final size:474
Alignment explanation
Indices: 7269584--7270528 Score: 1491
Period size: 478 Copynumber: 2.0 Consensus size: 474
7269574 TTTTTTAAAA
* * *
7269584 AATTTTTAATTTAAATGAATTTTTTATTATTATATATTTTTTATAATTAGACTAAAAAATTACTA
1 AATTTTTAATTTAAATGAATTTTTTATTATTAGACATTTTCTATAATTAGACTAAAAAATTACTA
* * * *
7269649 AAAATGATTGAGACAATTAATAGTGATCGATCTAAATACCTTTATACTAACAAATTTATCCTTAA
66 AAAATGATTGAGACAATTAATAGTGATCGACCTAAAGACCCTTATAATAACAAATTTATCCTTAA
* * * *
7269714 ATATATAACTTTTATTAATATATTTAAATTTAATTTAAATAAACTAGAATTAAAAATAAAGTTTA
131 ATATATAACTTTTATTAATATATTTAAATTCAATTTAAATAAACAAAAATTAAAAATAAAATTTA
* **
7269779 TGAGAAATTAAACTAAAAATTTTAAAATTTTAATTTTAAGTGTTAATAGTGATTAAATACGTTAT
196 TGAGAAATTAAACT---AATCTTAAAATTTTAATTTTAAGTGTTAATAGTGATTAAATACAATAT
*
7269844 CTTTAGTACATTTTTAATAATTTTTAATTTAAATAAATTTTTTATTATTAGACTTTCTTATAATT
258 CTTTAGTAAATTTTTAATAATTTTTAATTTAAATAAATTTTTTATTATTAGACTTTCTTATAATT
*
7269909 AGACTAAAAAAAATACTAAAAGTGATTTAGTAAACCCTTAATAAAATTTTAATTTCAAAAATATT
323 AGACT-AAAAAAATACTAAAAGTGATTGAGTAAACCCTTAATAAAATTTTAATTTCAAAAATATT
* *
7269974 AAGAGTGATTGATTAAAATACTATTAGTAATTTTCTATAAATTTTAATTTTAAATGATTTTATTT
387 AAAAGTGATTGATTAAAATACCATTAGTAATTTTCTATAAATTTTAATTTTAAATGATTTTATTT
7270039 TTAATATTAAACTCTTTTGTTAT
452 TTAATATTAAACTCTTTTGTTAT
*
7270062 AATTTTTAATTTAAATGAATTTTTTATTATTAGACCTTTTCTATAATTAGACTAAAAAATTACTA
1 AATTTTTAATTTAAATGAATTTTTTATTATTAGACATTTTCTATAATTAGACTAAAAAATTACTA
** *** *
7270127 AACGTGATTGAGATTGTTAATAGTGATTGACCTAAAGACCCTTATAATAACAAATTTATCCTTAA
66 AAAATGATTGAGACAATTAATAGTGATCGACCTAAAGACCCTTATAATAACAAATTTATCCTTAA
* *
7270192 ATATATAACTTTTATTAATTTATTTAAATTCAATTTAAATCAACAAAAATTAAAAATAAAATTTA
131 ATATATAACTTTTATTAATATATTTAAATTCAATTTAAATAAACAAAAATTAAAAATAAAATTTA
*
7270257 TGAGAAATTAAACT-A-CTTAAAATTTTAATTTTAAGTGTTAATAGTGATTGAATACAATATCTT
196 TGAGAAATTAAACTAATCTTAAAATTTTAATTTTAAGTGTTAATAGTGATTAAATACAATATCTT
* *
7270320 TAGTAAATTTTTTATAATTTTTAATTTAAATAAATTTTTTATTATTAGACTTTTTTTATAATTAG
261 TAGTAAATTTTTAATAATTTTTAATTTAAATAAATTTTTTATTATTAGAC-TTTCTTATAATTAG
* *
7270385 ACT-AAAAAATATTAAAAGTGATTGAGTAAATCCTTAATAAAATTTTAATTTCAAAAATATTAAA
325 ACTAAAAAAATACTAAAAGTGATTGAGTAAACCCTTAATAAAATTTTAATTTCAAAAATATTAAA
* * *
7270449 AGTGATTGATTAAAATACCATTAGTAATTTTTTATAAATTTTAATTTTAAATTATTTTATTTTTT
390 AGTGATTGATTAAAATACCATTAGTAATTTTCTATAAATTTTAATTTTAAATGATTTTATTTTTA
* *
7270514 ATGTTAAATTCTTTT
455 ATATTAAACTCTTTT
7270529 TCATAAGTAA
Statistics
Matches: 429, Mismatches: 37, Indels: 8
0.91 0.08 0.02
Matches are distributed among these distances:
472 131 0.31
473 92 0.21
474 17 0.04
478 189 0.44
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (474 bp):
AATTTTTAATTTAAATGAATTTTTTATTATTAGACATTTTCTATAATTAGACTAAAAAATTACTA
AAAATGATTGAGACAATTAATAGTGATCGACCTAAAGACCCTTATAATAACAAATTTATCCTTAA
ATATATAACTTTTATTAATATATTTAAATTCAATTTAAATAAACAAAAATTAAAAATAAAATTTA
TGAGAAATTAAACTAATCTTAAAATTTTAATTTTAAGTGTTAATAGTGATTAAATACAATATCTT
TAGTAAATTTTTAATAATTTTTAATTTAAATAAATTTTTTATTATTAGACTTTCTTATAATTAGA
CTAAAAAAATACTAAAAGTGATTGAGTAAACCCTTAATAAAATTTTAATTTCAAAAATATTAAAA
GTGATTGATTAAAATACCATTAGTAATTTTCTATAAATTTTAATTTTAAATGATTTTATTTTTAA
TATTAAACTCTTTTGTTAT
Found at i:7271616 original size:30 final size:29
Alignment explanation
Indices: 7271574--7271633 Score: 68
Period size: 32 Copynumber: 2.0 Consensus size: 29
7271564 TTTTAAAATT
*
7271574 ATTTATTTTAAT-ATTTTTATATAATAAAA
1 ATTTATTATAATAATTTTTATA-AATAAAA
*
7271603 ATTTATGTATAATAAATTTTTTTAAATAAAA
1 ATTTAT-TATAAT-AATTTTTATAAATAAAA
7271634 GAAAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
29 6 0.23
30 5 0.19
31 7 0.27
32 8 0.31
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (29 bp):
ATTTATTATAATAATTTTTATAAATAAAA
Found at i:7271818 original size:8 final size:8
Alignment explanation
Indices: 7271801--7271831 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
7271791 TGCTCAATGA
7271801 AAATATAC
1 AAATATAC
*
7271809 AAATACAC
1 AAATATAC
7271817 AAATATAC
1 AAATATAC
7271825 AAATATA
1 AAATATA
7271832 TTGGTTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.65, C:0.13, G:0.00, T:0.23
Consensus pattern (8 bp):
AAATATAC
Found at i:7286544 original size:16 final size:16
Alignment explanation
Indices: 7286499--7286546 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
7286489 AATTTTGTTT
7286499 AAAAA-AAAGAACAAA-
1 AAAAATAAAGAA-AAAG
7286514 AAAAATAAAG-AAAAG
1 AAAAATAAAGAAAAAG
*
7286529 AAAAATTAAGAAAAAG
1 AAAAATAAAGAAAAAG
7286545 AA
1 AA
7286547 TGATATATCT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 3 0.10
15 15 0.52
16 11 0.38
ACGTcount: A:0.81, C:0.02, G:0.10, T:0.06
Consensus pattern (16 bp):
AAAAATAAAGAAAAAG
Found at i:7287426 original size:51 final size:51
Alignment explanation
Indices: 7287355--7287784 Score: 244
Period size: 51 Copynumber: 8.5 Consensus size: 51
7287345 GAGAAAAGAT
* * *
7287355 AAGAATTTTTAAACTTGTTAAGCATCTACCTAGAGATACCTTTTTTAAAAG
1 AAGAATTTTTAAAGTTGTTAAGCCTCTACCTAAAGATACCTTTTTTAAAAG
* * * * *
7287406 AAGAATTTTTAAAGTTGTTAAGCTTATA-C-AAAAATGAGCCTTTTTCAATAG
1 AAGAATTTTTAAAGTTGTTAAGCCTCTACCTAAAGAT-A-CCTTTTTTAAAAG
* * * * *
7287457 AAGAATTTTTAAAGTTATTGAGCTTTTACCT--AGATGAGCCTTTTTTAATATG
1 AAGAATTTTTAAAGTTGTTAAGCCTCTACCTAAAGAT-A-CCTTTTTTAA-AAG
** * *
7287509 -AGAATTTTTAAAGTTGTTGAA-CCTCTACAAAAAGGA-ACCTTTTCTAAGATG
1 AAGAATTTTTAAAGTTGTT-AAGCCTCTACCTAAA-GATACCTTTTTTAA-AAG
* * ** * * * * *
7287560 -AGAATTTTTAAAGTTGTTAAACCTTTACAAAAAGA-GCATTTTCTAATAT
1 AAGAATTTTTAAAGTTGTTAAGCCTCTACCTAAAGATACCTTTTTTAAAAG
* * * * * *
7287609 AAGAATTTTTAAAATTGTTAAACCTCTACCTAGA-ATAGCCTTTTTCAATAT
1 AAGAATTTTTAAAGTTGTTAAGCCTCTACCTAAAGATA-CCTTTTTTAAAAG
* * * * *
7287660 AAAAATTTTTAAAGTTGTTGAGCCTCTACC--AAGATAAGCCTTTTTCAAGAT
1 AAGAATTTTTAAAGTTGTTAAGCCTCTACCTAAAGAT-A-CCTTTTTTAAAAG
* * * *
7287711 AAAAATTTTTAAAGTTGTTGAGCCTCTA-C-AAAGATGAGCCTTTTTTATATG
1 AAGAATTTTTAAAGTTGTTAAGCCTCTACCTAAAGAT-A-CCTTTTTTAAAAG
* *
7287762 CA-AA-TTTTAAAGTTGTTGAGCCT
1 AAGAATTTTTAAAGTTGTTAAGCCT
7287785 TTATAGAAAA
Statistics
Matches: 313, Mismatches: 50, Indels: 34
0.79 0.13 0.09
Matches are distributed among these distances:
49 25 0.08
50 48 0.15
51 233 0.74
52 4 0.01
53 1 0.00
54 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (51 bp):
AAGAATTTTTAAAGTTGTTAAGCCTCTACCTAAAGATACCTTTTTTAAAAG
Found at i:7287538 original size:102 final size:102
Alignment explanation
Indices: 7287355--7287784 Score: 394
Period size: 102 Copynumber: 4.2 Consensus size: 102
7287345 GAGAAAAGAT
* * * *
7287355 AAGAATTTTTAAACTTGTTAAGCATCTACCTAGAGAT-A-CCTTTTTTAAAAGAAGAATTTTTAA
1 AAGAATTTTTAAAGTTGTTAAGCCTCTACC-A-AGATGAGCCTTTTTTAATATAAGAATTTTTAA
* *
7287418 AGTTGTT-AAGCTTATACAAAAATGAGCCTTTTTCAATAG
64 AGTTGTTGAA-CCTCTACAAAAATGAGCCTTTTTCAATAG
* * * * * *
7287457 AAGAATTTTTAAAGTTATTGAGCTTTTACCTAGATGAGCCTTTTTTAATATGAGAATTTTTAAAG
1 AAGAATTTTTAAAGTTGTTAAGCCTCTACCAAGATGAGCCTTTTTTAATATAAGAATTTTTAAAG
* * *
7287522 TTGTTGAACCTCTACAAAAAGGAACC-TTTTCTA-AG
66 TTGTTGAACCTCTACAAAAATGAGCCTTTTTCAATAG
* * * * * *
7287557 ATGAGAATTTTTAAAGTTGTTAAACCTTTA-CAAAAAGAGCATTTTCTAATATAAGAATTTTTAA
1 A--AGAATTTTTAAAGTTGTTAAGCCTCTACCAAGATGAGCCTTTTTTAATATAAGAATTTTTAA
* * * * *
7287621 AATTGTTAAACCTCTACCTAGAAT-AGCCTTTTTCAATAT
64 AGTTGTTGAACCTCTA-CAAAAATGAGCCTTTTTCAATAG
* * * * * *
7287660 AAAAATTTTTAAAGTTGTTGAGCCTCTACCAAGATAAGCCTTTTTCAAGATAAAAATTTTTAAAG
1 AAGAATTTTTAAAGTTGTTAAGCCTCTACCAAGATGAGCCTTTTTTAATATAAGAATTTTTAAAG
* * *
7287725 TTGTTGAGCCTCTACAAAGATGAGCCTTTTT-TATATG
66 TTGTTGAACCTCTACAAAAATGAGCCTTTTTCAATA-G
* *
7287762 CA-AA-TTTTAAAGTTGTTGAGCCT
1 AAGAATTTTTAAAGTTGTTAAGCCT
7287785 TTATAGAAAA
Statistics
Matches: 264, Mismatches: 53, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
100 26 0.10
101 84 0.32
102 150 0.57
103 4 0.02
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (102 bp):
AAGAATTTTTAAAGTTGTTAAGCCTCTACCAAGATGAGCCTTTTTTAATATAAGAATTTTTAAAG
TTGTTGAACCTCTACAAAAATGAGCCTTTTTCAATAG
Found at i:7287768 original size:152 final size:151
Alignment explanation
Indices: 7287353--7287778 Score: 443
Period size: 152 Copynumber: 2.8 Consensus size: 151
7287343 TCGAGAAAAG
* * * * * *
7287353 ATAAGAATTTTTAAACTTGTTAAGCATCTACCTAGAGAT-ACCTTTTTTAAAAGAAGAATTTTTA
1 ATAAGAATTTTTAAAGTTGTTGAGCCTCTACC-A-AGATAACCTTTTTCAAGATAAGAATTTTTA
* * * * *
7287417 AAGTTGTTAAGCTTATACAAAAATGAGCCTTTTTCAATA-GAAGAATTTTTAAAGTTATTGAGCT
64 AAGTTGTTAAGCCTATAC-AAAATGAGCCTTTTT-AATATGAAGAATTTTTAAAGTTGTTAAACC
* *
7287481 TTTACCTAGATGAGCCTTTTTTAAT
127 TCTACCTAGATGAGCCTTTTTCAAT
* * * * * *
7287506 ATGAGAATTTTTAAAGTTGTTGAACCTCTACAAAAAGGAACC-TTTTCTAAGATGAGAATTTTTA
1 ATAAGAATTTTTAAAGTTGTTGAGCCTCTACCAAGA-TAACCTTTTTC-AAGATAAGAATTTTTA
* * * * *
7287570 AAGTTGTTAAACCTTTACAAAAAGAGCATTTTCTAATAT-AAGAATTTTTAAAATTGTTAAACCT
64 AAGTTGTTAAGCCTATACAAAATGAGCCTTTT-TAATATGAAGAATTTTTAAAGTTGTTAAACCT
7287634 CTACCTAGAAT-AGCCTTTTTCAAT
128 CTACCTAG-ATGAGCCTTTTTCAAT
* *
7287658 ATAAAAATTTTTAAAGTTGTTGAGCCTCTACCAAGATAAGCCTTTTTCAAGATAAAAATTTTTAA
1 ATAAGAATTTTTAAAGTTGTTGAGCCTCTACCAAGATAA-CCTTTTTCAAGATAAGAATTTTTAA
* * * *
7287723 AGTTGTTGAGCCTCTACAAAGATGAGCCTTTTTTATATGCA-AA-TTTTAAAGTTGTT
65 AGTTGTTAAGCCTATACAAA-ATGAGCCTTTTTAATATGAAGAATTTTTAAAGTTGTT
7287779 GAGCCTTTAT
Statistics
Matches: 223, Mismatches: 40, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
151 16 0.07
152 132 0.59
153 75 0.34
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.38
Consensus pattern (151 bp):
ATAAGAATTTTTAAAGTTGTTGAGCCTCTACCAAGATAACCTTTTTCAAGATAAGAATTTTTAAA
GTTGTTAAGCCTATACAAAATGAGCCTTTTTAATATGAAGAATTTTTAAAGTTGTTAAACCTCTA
CCTAGATGAGCCTTTTTCAAT
Found at i:7290809 original size:22 final size:22
Alignment explanation
Indices: 7290784--7290875 Score: 60
Period size: 22 Copynumber: 4.2 Consensus size: 22
7290774 GTCATCATCG
7290784 ATAACTTAGTAGTAAATTAGTA
1 ATAACTTAGTAGTAAATTAGTA
* * * * *
7290806 ATAACTTAATAATAAATGAATG
1 ATAACTTAGTAGTAAATTAGTA
* * *
7290828 ATAATTTAGTAGTTAA-TAGTTG
1 ATAACTTAGTAGTAAATTAG-TA
** * *
7290850 ATAACTTTTTAGTGAATCAGTA
1 ATAACTTAGTAGTAAATTAGTA
7290872 ATAA
1 ATAA
7290876 TACAATAATA
Statistics
Matches: 51, Mismatches: 17, Indels: 4
0.71 0.24 0.06
Matches are distributed among these distances:
21 1 0.02
22 48 0.94
23 2 0.04
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (22 bp):
ATAACTTAGTAGTAAATTAGTA
Found at i:7290895 original size:22 final size:22
Alignment explanation
Indices: 7290870--7290938 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 22
7290860 AGTGAATCAG
*
7290870 TAATAATACAATAATAAATGCA
1 TAATAATATAATAATAAATGCA
* * * **
7290892 TAATATTTTAATAGTAAATTAA
1 TAATAATATAATAATAAATGCA
* *
7290914 TTATAATATAATTATAAATGCA
1 TAATAATATAATAATAAATGCA
7290936 TAA
1 TAA
7290939 CATTATAGTA
Statistics
Matches: 33, Mismatches: 14, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (22 bp):
TAATAATATAATAATAAATGCA
Found at i:7291049 original size:23 final size:22
Alignment explanation
Indices: 7291004--7291068 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
7290994 TTAACTATTT
* * *
7291004 ATAACTTAGTAAT-AATTAATG
1 ATAATTTAATAATAAATTAGTG
*
7291025 ATAACTTTAATAGTAAATTAGTG
1 ATAA-TTTAATAATAAATTAGTG
7291048 ATAATTTAATAATAAATTAGT
1 ATAATTTAATAATAAATTAGT
7291069 TTCAGTTTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 4 0.11
22 22 0.59
23 11 0.30
ACGTcount: A:0.48, C:0.03, G:0.09, T:0.40
Consensus pattern (22 bp):
ATAATTTAATAATAAATTAGTG
Found at i:7291058 original size:22 final size:22
Alignment explanation
Indices: 7291017--7291210 Score: 77
Period size: 22 Copynumber: 9.1 Consensus size: 22
7291007 ACTTAGTAAT
7291017 AATTAATGATAACTTTAATAGTA
1 AATTAATGATAA-TTTAATAGTA
* *
7291040 AATTAGTGATAATTTAATAATA
1 AATTAATGATAATTTAATAGTA
* * *
7291062 AATTAGT-TTCAGTTTAATAGT-
1 AATTAATGAT-AATTTAATAGTA
*
7291083 AATTAAT--TAA--TAGTAGT-
1 AATTAATGATAATTTAATAGTA
* * * * *
7291100 TATTCATTGAAAACTTAAAAGTA
1 AATT-AATGATAATTTAATAGTA
* * * *
7291123 AATCAGT-ACAACTTAATAGTA
1 AATTAATGATAATTTAATAGTA
* * *
7291144 AA-TCATCGATAATATAATAGTT
1 AATTAAT-GATAATTTAATAGTA
* *
7291166 AATCAATGATAACTTAATAGTA
1 AATTAATGATAATTTAATAGTA
*
7291188 AA-TCATGCATAATTTAATA-TA
1 AATTAATG-ATAATTTAATAGTA
7291209 AA
1 AA
7291211 ACAGTAGTAA
Statistics
Matches: 127, Mismatches: 33, Indels: 24
0.69 0.18 0.13
Matches are distributed among these distances:
17 9 0.07
18 2 0.02
19 1 0.01
20 4 0.03
21 28 0.22
22 68 0.54
23 15 0.12
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (22 bp):
AATTAATGATAATTTAATAGTA
Found at i:7291301 original size:41 final size:41
Alignment explanation
Indices: 7291251--7291331 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
7291241 AATTTAATGA
* * *
7291251 TAAATCAATAATAATTTTGTGATAAATA-ATTAAAAATATAC
1 TAAATCAATAATAAATATATGATAAATATA-TAAAAATATAC
*
7291292 TAAATCAATAATAAATATATTATAAATATATAAAAATATA
1 TAAATCAATAATAAATATATGATAAATATATAAAAATATA
7291332 GTAGTAAATC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 34 0.97
42 1 0.03
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (41 bp):
TAAATCAATAATAAATATATGATAAATATATAAAAATATAC
Found at i:7291311 original size:22 final size:22
Alignment explanation
Indices: 7291250--7291341 Score: 63
Period size: 22 Copynumber: 4.3 Consensus size: 22
7291240 TAATTTAATG
* *
7291250 ATAAATCAATAAT-AATTTTGT
1 ATAAATCAATAATAAATATAGT
7291271 GATAAAT-AATTAA-AAATATA--
1 -ATAAATCAA-TAATAAATATAGT
* *
7291291 CTAAATCAATAATAAATATATT
1 ATAAATCAATAATAAATATAGT
7291313 ATAAAT-ATATAA-AAATATAGT
1 ATAAATCA-ATAATAAATATAGT
7291334 AGTAAATC
1 A-TAAATC
7291342 CCTAATAACG
Statistics
Matches: 56, Mismatches: 5, Indels: 17
0.72 0.06 0.22
Matches are distributed among these distances:
19 8 0.14
20 9 0.16
21 12 0.21
22 27 0.48
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (22 bp):
ATAAATCAATAATAAATATAGT
Found at i:7291330 original size:21 final size:23
Alignment explanation
Indices: 7291299--7291340 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
7291289 TACTAAATCA
*
7291299 ATAATAAATATATTA-TAAATAT
1 ATAATAAATATAGTAGTAAATAT
7291321 ATAA-AAATATAGTAGTAAAT
1 ATAATAAATATAGTAGTAAAT
7291341 CCCTAATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (23 bp):
ATAATAAATATAGTAGTAAATAT
Found at i:7291404 original size:11 final size:11
Alignment explanation
Indices: 7291359--7291489 Score: 65
Period size: 11 Copynumber: 12.2 Consensus size: 11
7291349 ACGTAATAGC
*
7291359 AAATTACTAAT
1 AAATTAGTAAT
* *
7291370 AACTTAGTTAT
1 AAATTAGTAAT
* *
7291381 AAATAAGTGAT
1 AAATTAGTAAT
*
7291392 AATTTAGTAAT
1 AAATTAGTAAT
7291403 AAATTAGT--T
1 AAATTAGTAAT
*
7291412 -AATTACTAAT
1 AAATTAGTAAT
* ** *
7291422 AACTTTTTAGT
1 AAATTAGTAAT
*
7291433 AAATCA-TCAAT
1 AAATTAGT-AAT
*
7291444 AAATTAGTAGT
1 AAATTAGTAAT
* *
7291455 AAATCAGTTAT
1 AAATTAGTAAT
7291466 AAATTTA-TAAT
1 AAA-TTAGTAAT
*
7291477 AAATTATTAAT
1 AAATTAGTAAT
7291488 AA
1 AA
7291490 CTTAATGGTA
Statistics
Matches: 87, Mismatches: 26, Indels: 14
0.69 0.20 0.11
Matches are distributed among these distances:
8 6 0.07
9 1 0.01
10 5 0.06
11 72 0.83
12 3 0.03
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.40
Consensus pattern (11 bp):
AAATTAGTAAT
Found at i:7291444 original size:22 final size:22
Alignment explanation
Indices: 7291429--7291610 Score: 70
Period size: 22 Copynumber: 8.3 Consensus size: 22
7291419 AATAACTTTT
7291429 TAGTAAATCATCAATAAATTAG
1 TAGTAAATCATCAATAAATTAG
*
7291451 TAGTAAATCAGT-TATAAATTTA-
1 TAGTAAATCA-TCAATAAA-TTAG
* * * * *
7291473 TAATAAATTATTAATAACTTAA
1 TAGTAAATCATCAATAAATTAG
* * * * *
7291495 TGGTAAATCACCAA-CAATGAT
1 TAGTAAATCATCAATAAATTAG
* * *
7291516 TAGTAAATTATTC-ATAACTTAA
1 TAGTAAATCA-TCAATAAATTAG
* * **
7291538 TAGCAAATCCTTTATAAATTAG
1 TAGTAAATCATCAATAAATTAG
7291560 TAGTAAATCATTCACAT--ATTAG
1 TAGTAAATCA-TCA-ATAAATTAG
* * ** *
7291582 TAGTACATTATTTATAACTTAG
1 TAGTAAATCATCAATAAATTAG
7291604 TAGTAAA
1 TAGTAAA
7291611 CAACTACTAA
Statistics
Matches: 112, Mismatches: 37, Indels: 22
0.65 0.22 0.13
Matches are distributed among these distances:
20 2 0.02
21 18 0.16
22 85 0.76
23 5 0.04
24 2 0.02
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.37
Consensus pattern (22 bp):
TAGTAAATCATCAATAAATTAG
Found at i:7291451 original size:52 final size:52
Alignment explanation
Indices: 7291360--7291464 Score: 124
Period size: 52 Copynumber: 2.0 Consensus size: 52
7291350 CGTAATAGCA
* * *
7291360 AATTACTAATAACTTAGTTATAAATAAGTGATAATTTAGTAATAAATTAGTT
1 AATTACTAATAACTTAGTTATAAATAAGTAATAAATTAGTAATAAATCAGTT
* * *
7291412 AATTACTAATAACTT-TTTAGTAAATCA-TCAATAAATTAGTAGTAAATCAGTT
1 AATTACTAATAACTTAGTTA-TAAATAAGT-AATAAATTAGTAATAAATCAGTT
7291464 A
1 A
7291465 TAAATTTATA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
51 4 0.09
52 41 0.91
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.39
Consensus pattern (52 bp):
AATTACTAATAACTTAGTTATAAATAAGTAATAAATTAGTAATAAATCAGTT
Found at i:7292051 original size:22 final size:22
Alignment explanation
Indices: 7291918--7292187 Score: 112
Period size: 22 Copynumber: 12.2 Consensus size: 22
7291908 AATAAGTGAC
* *
7291918 AACTTATTAGTTAAT-AATTGAT
1 AACTTAATAGTAAATCAA-TGAT
** *
7291940 AACTTAATAAAAAATCTATGAT
1 AACTTAATAGTAAATCAATGAT
* * *
7291962 AATTTAATAGTAAATCAGT-TT
1 AACTTAATAGTAAATCAATGAT
*
7291983 CAA-TTAATAGT-AATTAATTGAT
1 -AACTTAATAGTAAATCAA-TGAT
* * *
7292005 AAATTTAGTAG-AGAATC-ATAAAT
1 -AACTTAATAGTA-AATCAAT-GAT
7292028 AACTTAATAGTAAATCAATGAT
1 AACTTAATAGTAAATCAATGAT
* * * * * * *
7292050 AATTTAGTAATTAATTATTGAA
1 AACTTAATAGTAAATCAATGAT
*
7292072 AACTTAAAAGTAAATCAAT-AT
1 AACTTAATAGTAAATCAATGAT
* *
7292093 AACTTAGTAATAGCT-AATCATTAAT
1 AAC-T--TAATAG-TAAATCAATGAT
* * *
7292118 AACTTAATAGTTAATCACTAAT
1 AACTTAATAGTAAATCAATGAT
*
7292140 AACTTGATAGTAAATC-ATGGAT
1 AACTTAATAGTAAATCAAT-GAT
*
7292162 AATTTAATA-TAAAAT-AATGAT
1 AACTTAATAGT-AAATCAATGAT
7292183 AACTT
1 AACTT
7292188 GATAATGAAT
Statistics
Matches: 183, Mismatches: 46, Indels: 39
0.68 0.17 0.15
Matches are distributed among these distances:
20 4 0.02
21 24 0.13
22 121 0.66
23 13 0.07
24 15 0.08
25 6 0.03
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.37
Consensus pattern (22 bp):
AACTTAATAGTAAATCAATGAT
Found at i:7292054 original size:44 final size:43
Alignment explanation
Indices: 7291986--7292134 Score: 124
Period size: 44 Copynumber: 3.3 Consensus size: 43
7291976 TCAGTTTCAA
*
7291986 TTAATAGT-AATTAATTGATAAATTTAGTAGAGAATCATAAATAAC
1 TTAATAGTAAATCAA-TGAT-AATTTAGTA-AGAATCATAAATAAC
* * *
7292031 TTAATAGTAAATCAATGATAATTTAGTAATTAATTATTGAA-AAC
1 TTAATAGTAAATCAATGATAATTTAGTAA-GAATCA-TAAATAAC
* * *
7292075 TTAAAAGTAAATCAAT-ATAACTTAGTAATAGCTAATCATTAATAAC
1 TTAATAGTAAATCAATGATAATTTAGT-A-AG--AATCATAAATAAC
*
7292121 TTAATAGTTAATCA
1 TTAATAGTAAATCA
7292135 CTAATAACTT
Statistics
Matches: 85, Mismatches: 11, Indels: 15
0.77 0.10 0.14
Matches are distributed among these distances:
43 10 0.12
44 32 0.38
45 19 0.22
46 24 0.28
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (43 bp):
TTAATAGTAAATCAATGATAATTTAGTAAGAATCATAAATAAC
Found at i:7292324 original size:22 final size:21
Alignment explanation
Indices: 7292299--7292380 Score: 92
Period size: 22 Copynumber: 3.8 Consensus size: 21
7292289 AACATAATAA
*
7292299 TAAATCATTGATAATTTAGATG
1 TAAATTATTGATAATTTAG-TG
7292321 TAAATTATTGATAATTTAGTAG
1 TAAATTATTGATAATTTAGT-G
* *
7292343 TAAATTACTAATAATTTAGTTG
1 TAAATTATTGATAATTTAG-TG
* *
7292365 TAAATAAGTGATAATT
1 TAAATTATTGATAATT
7292381 AGTAGCAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
21 1 0.02
22 50 0.96
23 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (21 bp):
TAAATTATTGATAATTTAGTG
Found at i:7292347 original size:44 final size:43
Alignment explanation
Indices: 7292299--7292390 Score: 112
Period size: 44 Copynumber: 2.1 Consensus size: 43
7292289 AACATAATAA
* * * *
7292299 TAAATCATTGATAATTTAGATGTAAATTATTGATAATTTAGTAG
1 TAAATCACTAATAATTTAGATGTAAATAAGTGATAA-TTAGTAG
* *
7292343 TAAATTACTAATAATTTAGTTGTAAATAAGTGATAATTAGTAG
1 TAAATCACTAATAATTTAGATGTAAATAAGTGATAATTAGTAG
*
7292386 CAAAT
1 TAAAT
7292391 TAGTTAATCA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 11 0.27
44 30 0.73
ACGTcount: A:0.43, C:0.03, G:0.13, T:0.40
Consensus pattern (43 bp):
TAAATCACTAATAATTTAGATGTAAATAAGTGATAATTAGTAG
Found at i:7292500 original size:22 final size:22
Alignment explanation
Indices: 7292474--7292591 Score: 103
Period size: 22 Copynumber: 5.4 Consensus size: 22
7292464 CATTAGTTAA
*
7292474 TAGTAAATTATTAACAATTTAG
1 TAGTAAATTATTAATAATTTAG
* * *
7292496 TAGTAAATTAATCATAACTTAG
1 TAGTAAATTATTAATAATTTAG
* * ** *
7292518 TAGTAAATAAATGCTAATTTAA
1 TAGTAAATTATTAATAATTTAG
* *
7292540 TAGTAAATCATTGATAATTTAG
1 TAGTAAATTATTAATAATTTAG
* *
7292562 TAGT-ATTTGATTAATAGTTTAG
1 TAGTAAATT-ATTAATAATTTAG
7292584 TAGTAAAT
1 TAGTAAAT
7292592 CGCTGAGAAT
Statistics
Matches: 76, Mismatches: 18, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
21 2 0.03
22 72 0.95
23 2 0.03
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (22 bp):
TAGTAAATTATTAATAATTTAG
Found at i:7292628 original size:22 final size:22
Alignment explanation
Indices: 7292470--7292637 Score: 95
Period size: 22 Copynumber: 7.6 Consensus size: 22
7292460 AAATCATTAG
* * *
7292470 TTAATAGTAAATTATTAACAAT
1 TTAATAGTAAATTAATGATAAT
* * *
7292492 TTAGTAGTAAATTAATCATAAC
1 TTAATAGTAAATTAATGATAAT
* * *
7292514 TTAGTAGTAAATAAATGCTAAT
1 TTAATAGTAAATTAATGATAAT
* *
7292536 TTAATAGTAAATCATTGATAAT
1 TTAATAGTAAATTAATGATAAT
* * * * *
7292558 TTAGTAGT-ATTTGATTAATAGT
1 TTAATAGTAAATT-AATGATAAT
* *** *
7292580 TTAGTAGTAAATCGCTGAGAAT
1 TTAATAGTAAATTAATGATAAT
* *
7292602 ATAATAGTAAATTAATGATAAC
1 TTAATAGTAAATTAATGATAAT
* *
7292624 TTAATTGTCAATTA
1 TTAATAGTAAATTA
7292638 TTAATAAATT
Statistics
Matches: 109, Mismatches: 35, Indels: 4
0.74 0.24 0.03
Matches are distributed among these distances:
21 2 0.02
22 105 0.96
23 2 0.02
ACGTcount: A:0.43, C:0.05, G:0.12, T:0.39
Consensus pattern (22 bp):
TTAATAGTAAATTAATGATAAT
Found at i:7292946 original size:22 final size:21
Alignment explanation
Indices: 7292921--7293011 Score: 69
Period size: 22 Copynumber: 4.2 Consensus size: 21
7292911 TATAATAGGT
7292921 TATCGAAAGATTACTAAAATTA
1 TATC-AAAGATTACTAAAATTA
* *
7292943 TATCAAGAGGTTACTAAAATTT
1 TATCAA-AGATTACTAAAATTA
* *
7292965 TATAAAAAAATTAGC-AAAATTA
1 TAT-CAAAGATTA-CTAAAATTA
* *
7292987 TATCAATGGTTA-TCAAAATTA
1 TATCAAAGATTACT-AAAATTA
7293008 TATC
1 TATC
7293012 TTTAGTTACC
Statistics
Matches: 54, Mismatches: 10, Indels: 11
0.72 0.13 0.15
Matches are distributed among these distances:
21 18 0.33
22 33 0.61
23 3 0.06
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (21 bp):
TATCAAAGATTACTAAAATTA
Found at i:7293005 original size:21 final size:21
Alignment explanation
Indices: 7292979--7293067 Score: 81
Period size: 21 Copynumber: 4.2 Consensus size: 21
7292969 AAAAAATTAG
*
7292979 CAAAATTATATCAATGGTTAT
1 CAAAATTATATCAATAGTTAT
** *
7293000 CAAAATTATATCTTTAGTTAC
1 CAAAATTATATCAATAGTTAT
* *
7293021 CAAAATTATATTGAA-GGTTAT
1 CAAAATTATA-TCAATAGTTAT
* *
7293042 CAAAAATTTTATCAAAAGTTAT
1 C-AAAATTATATCAATAGTTAT
7293064 CAAA
1 CAAA
7293068 TTTTACTTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
21 38 0.72
22 15 0.28
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.37
Consensus pattern (21 bp):
CAAAATTATATCAATAGTTAT
Found at i:7296979 original size:222 final size:222
Alignment explanation
Indices: 7296593--7297036 Score: 798
Period size: 222 Copynumber: 2.0 Consensus size: 222
7296583 CTTATTCCAA
7296593 TTAGCATCAGACATTCCCTCAGGCTTACTACTCTCTAATGCCCGATCCAACCCTTGTTATACTAA
1 TTAGCATCAGACATTCCCTCAGGCTTACTACTCTCTAATGCCCGATCCAACCCTTGTTATACTAA
*
7296658 CAAATCTTGAATTGTACTTTGCCATAACATAAAATTACTCTTTTCATCAAATAATGAAATCTCAA
66 CAAATCTTGAATTGTACTTTGCCATAACATAAAATTACTCTTTTCATCAAATAATGAAATCTAAA
* * *
7296723 ACTTAGGCATAGGCATACCAGACATACTTTCTTCAAACATCTTAAAACATTGCTTCACGATCTTT
131 ACTTAGACATAGGCATACCAGACATACTTTCTTCAAACATCTTAAAACACTGCTTCACAATCTTT
7296788 TGGTCTCACGATCTTTAAACCTCGAAC
196 TGGTCTCACGATCTTTAAACCTCGAAC
* *
7296815 TTAGCATCAGACATTTCCTCAGGCTTACTACTCTCTAATGCTCGATCCAACCCTTGTTATACTAA
1 TTAGCATCAGACATTCCCTCAGGCTTACTACTCTCTAATGCCCGATCCAACCCTTGTTATACTAA
7296880 CAAATCTTGAATTGTACTTTGCCATAACATAAAATTACTCTTTTCATCAAATAATGAAATCTAAA
66 CAAATCTTGAATTGTACTTTGCCATAACATAAAATTACTCTTTTCATCAAATAATGAAATCTAAA
* * *
7296945 ACTTAGACATAGGCATACCAGACATACTTTCTTCAGACATCTTAAAACACTGCTTCATAATTTTT
131 ACTTAGACATAGGCATACCAGACATACTTTCTTCAAACATCTTAAAACACTGCTTCACAATCTTT
*
7297010 TGGTCTCACGATCTTTAAACCTTGAAC
196 TGGTCTCACGATCTTTAAACCTCGAAC
7297037 CTCGCTCTGA
Statistics
Matches: 212, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
222 212 1.00
ACGTcount: A:0.32, C:0.25, G:0.10, T:0.33
Consensus pattern (222 bp):
TTAGCATCAGACATTCCCTCAGGCTTACTACTCTCTAATGCCCGATCCAACCCTTGTTATACTAA
CAAATCTTGAATTGTACTTTGCCATAACATAAAATTACTCTTTTCATCAAATAATGAAATCTAAA
ACTTAGACATAGGCATACCAGACATACTTTCTTCAAACATCTTAAAACACTGCTTCACAATCTTT
TGGTCTCACGATCTTTAAACCTCGAAC
Found at i:7297989 original size:22 final size:22
Alignment explanation
Indices: 7297954--7297996 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
7297944 TCAATTGTGT
*
7297954 ATAATATTGAAATTTTAATTTTA
1 ATAATATT-AAAATTTAATTTTA
7297977 ATAA-ATTAAAATTTAATTTT
1 ATAATATTAAAATTTAATTTT
7297997 TTATCATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
22 3 0.16
23 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
ATAATATTAAAATTTAATTTTA
Found at i:7303910 original size:6 final size:6
Alignment explanation
Indices: 7303899--7303930 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
7303889 TAACCGTCAA
7303899 TGAGTT TGAGTT TGAGTT TGAGTT TGAGTT TG
1 TGAGTT TGAGTT TGAGTT TGAGTT TGAGTT TG
7303931 TGAGCGACAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.50
Consensus pattern (6 bp):
TGAGTT
Found at i:7307597 original size:25 final size:25
Alignment explanation
Indices: 7307569--7307618 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
7307559 TTTAAAATTA
7307569 TATATGAAAAT-TT-ATATATTTATAT
1 TATAT-AAAATATTAATA-ATTTATAT
7307594 TATATAAAATATTAATAATTTATAT
1 TATATAAAATATTAATAATTTATAT
7307619 ATTTTTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.22
25 15 0.65
26 3 0.13
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
TATATAAAATATTAATAATTTATAT
Found at i:7307617 original size:33 final size:33
Alignment explanation
Indices: 7307577--7307672 Score: 101
Period size: 37 Copynumber: 2.8 Consensus size: 33
7307567 TATATATGAA
7307577 AATTTATATATTTATATTATATAAAATATTA-AT
1 AATTTATATATTTATATTATATAAAA-ATTACAT
7307610 AATTTATATATTTTTATATATTATATAAAAATTACAT
1 AATTTATATA---TT-TATATTATATAAAAATTACAT
*
7307647 -A-TTATA-ATTTATTTTAATATAAAAAT
1 AATTTATATATTTATATT-ATATAAAAAT
7307673 ATAAAATATA
Statistics
Matches: 56, Mismatches: 1, Indels: 14
0.79 0.01 0.20
Matches are distributed among these distances:
30 5 0.09
31 12 0.21
33 10 0.18
34 1 0.02
35 5 0.09
36 7 0.12
37 16 0.29
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (33 bp):
AATTTATATATTTATATTATATAAAAATTACAT
Found at i:7307689 original size:31 final size:29
Alignment explanation
Indices: 7307615--7307693 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 29
7307605 TTAATAATTT
*
7307615 ATATATTTTTATATATT-ATATAAAAATTAC
1 ATATATTTTTAT-T-TTAATATAAAAATTAA
*
7307645 ATATTATAATTTATTTTAATATAAAAATATAAA
1 ATA-TAT-TTTTATTTTAATATAAAAAT-T-AA
7307678 ATATATTTTTATTTTA
1 ATATATTTTTATTTTA
7307694 TTAAATGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
30 5 0.12
31 23 0.56
32 9 0.22
33 4 0.10
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (29 bp):
ATATATTTTTATTTTAATATAAAAATTAA
Found at i:7308303 original size:30 final size:32
Alignment explanation
Indices: 7308252--7308310 Score: 95
Period size: 30 Copynumber: 1.9 Consensus size: 32
7308242 ATTATATTTT
*
7308252 ATATAAAAATTATATATTAT-AATTTATATAA
1 ATATAAAAATTATAAATTATAAATTTATATAA
7308283 ATAT-AAAATTATAAATTATAAATTTATA
1 ATATAAAAATTATAAATTATAAATTTATA
7308311 ATTTTTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (32 bp):
ATATAAAAATTATAAATTATAAATTTATATAA
Found at i:7308313 original size:14 final size:14
Alignment explanation
Indices: 7308261--7308313 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
7308251 TATATAAAAA
*
7308261 TTATATATTATAATT
1 TTATA-ATTATAAAT
* *
7308276 TATATAAATATAAAA
1 T-TATAATTATAAAT
7308291 TTATAAATTATAAAT
1 TTAT-AATTATAAAT
7308306 TTATAATT
1 TTATAATT
7308314 TTTATTAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
14 7 0.23
15 20 0.65
16 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TTATAATTATAAAT
Found at i:7308314 original size:7 final size:7
Alignment explanation
Indices: 7308258--7308311 Score: 54
Period size: 7 Copynumber: 7.3 Consensus size: 7
7308248 TTTTATATAA
7308258 AAATTAT
1 AAATTAT
*
7308265 ATATTAT
1 AAATTAT
*
7308272 AATTTAT
1 AAATTAT
*
7308279 ATAAATAT
1 A-AATTAT
7308287 AAAATTAT
1 -AAATTAT
7308295 AAATTAT
1 AAATTAT
7308302 AAATTTAT
1 AAA-TTAT
7308310 AA
1 AA
7308312 TTTTTATTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
7 22 0.58
8 15 0.39
9 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AAATTAT
Found at i:7309166 original size:27 final size:26
Alignment explanation
Indices: 7309086--7309166 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 26
7309076 TAATGTAAGA
7309086 ATTTAGTTTAATTTAA--TATTAAATTT
1 ATTTA-TTT-ATTTAATTTATTAAATTT
* *
7309112 ATTTTATTATATGTTAATTCATT-GATTT
1 A-TTTATT-TAT-TTAATTTATTAAATTT
7309140 ATTTATTTGATTTAATTTATTAAATTT
1 ATTTATTT-ATTTAATTTATTAAATTT
7309167 TTATACGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 13
0.72 0.07 0.21
Matches are distributed among these distances:
26 15 0.34
27 21 0.48
28 5 0.11
29 3 0.07
ACGTcount: A:0.33, C:0.01, G:0.05, T:0.60
Consensus pattern (26 bp):
ATTTATTTATTTAATTTATTAAATTT
Found at i:7310759 original size:16 final size:15
Alignment explanation
Indices: 7310740--7310815 Score: 52
Period size: 15 Copynumber: 5.1 Consensus size: 15
7310730 TTTTTTGTGT
7310740 ATTTAAAATTATTAAA
1 ATTTAAAATT-TTAAA
7310756 ATTT-AAATTTTGATAA
1 ATTTAAAATTTT-A-AA
*
7310772 ATTT-AAATTTTAATC
1 ATTTAAAATTTTAA-A
*
7310787 A-TTAAAA-TTAAAA
1 ATTTAAAATTTTAAA
* *
7310800 ATTTAATATTTGAAA
1 ATTTAAAATTTTAAA
7310815 A
1 A
7310816 ATATTAGCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 13
0.73 0.07 0.19
Matches are distributed among these distances:
13 1 0.02
14 14 0.29
15 17 0.35
16 17 0.35
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (15 bp):
ATTTAAAATTTTAAA
Found at i:7310958 original size:29 final size:30
Alignment explanation
Indices: 7310901--7310980 Score: 99
Period size: 30 Copynumber: 2.6 Consensus size: 30
7310891 TTTTCTAAAA
*
7310901 TAAAAAATAAATTAAAAACATTTTTTGGAT-AT
1 TAAAAAAT-AATT-AAATC-TTTTTTGGATAAT
*
7310933 TTAAAAATAATTAAATCTTTTTTGGATAAT
1 TAAAAAATAATTAAATCTTTTTTGGATAAT
*
7310963 TAAAAAACAATTAAATCT
1 TAAAAAATAATTAAATCT
7310981 AACAAAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
29 10 0.23
30 22 0.51
31 4 0.09
32 7 0.16
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (30 bp):
TAAAAAATAATTAAATCTTTTTTGGATAAT
Found at i:7311341 original size:14 final size:15
Alignment explanation
Indices: 7311317--7311354 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
7311307 CCTATCTCTT
7311317 TTTCTCTTTCTTTT-C
1 TTTC-CTTTCTTTTCC
7311332 TTTCCTTTCTTTTCC
1 TTTCCTTTCTTTTCC
7311347 TTT-CTTTC
1 TTTCCTTTC
7311355 CCTCTCTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTCCTTTCTTTTCC
Found at i:7311345 original size:10 final size:10
Alignment explanation
Indices: 7311317--7311363 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
7311307 CCTATCTCTT
*
7311317 TTTCTCTTTCT
1 TTTCT-TTTCC
7311328 TTTC-TTTCC
1 TTTCTTTTCC
7311337 TTTCTTTTCC
1 TTTCTTTTCC
*
7311347 TTTCTTTCCC
1 TTTCTTTTCC
*
7311357 TCTCTTT
1 TTTCTTT
7311364 CTCTCTGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 8 0.25
10 20 0.62
11 4 0.12
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTCTTTTCC
Found at i:7311355 original size:9 final size:9
Alignment explanation
Indices: 7311321--7311355 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
7311311 TCTCTTTTTC
*
7311321 TCTTTCTTT
1 TCTTTCCTT
7311330 TCTTTCCTT
1 TCTTTCCTT
7311339 TCTTTTCCTT
1 TC-TTTCCTT
7311349 TCTTTCC
1 TCTTTCC
7311356 CTCTCTTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (9 bp):
TCTTTCCTT
Found at i:7317353 original size:26 final size:26
Alignment explanation
Indices: 7317324--7317383 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
7317314 AAAAATGGAA
7317324 AGAAAGATATCTTCAAAGAAATATTG
1 AGAAAGATATCTTCAAAGAAATATTG
* *
7317350 AGAAAGATATCTTTAAGGAAATATTG
1 AGAAAGATATCTTCAAAGAAATATTG
*
7317376 AGAGAGAT
1 AGAAAGAT
7317384 TGTCTTGTGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.48, C:0.05, G:0.20, T:0.27
Consensus pattern (26 bp):
AGAAAGATATCTTCAAAGAAATATTG
Found at i:7335260 original size:3 final size:3
Alignment explanation
Indices: 7335252--7335282 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
7335242 TACAGCCTTT
*
7335252 TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7335283 CTATACATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7335795 original size:20 final size:21
Alignment explanation
Indices: 7335757--7335795 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7335747 AATCAAAATG
7335757 AAAAGACAAAAGAAATTGCTC
1 AAAAGACAAAAGAAATTGCTC
*
7335778 AAAAGACGAAAG-AATTGC
1 AAAAGACAAAAGAAATTGC
7335796 AGATGGGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.56, C:0.13, G:0.18, T:0.13
Consensus pattern (21 bp):
AAAAGACAAAAGAAATTGCTC
Found at i:7337077 original size:32 final size:32
Alignment explanation
Indices: 7337036--7337100 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
7337026 CAAATATAAG
7337036 ATAGAATGACATTATTTAATTTGATTCCATTC
1 ATAGAATGACATTATTTAATTTGATTCCATTC
7337068 ATAGAATGACATTATTTAATTTGATTCCATTC
1 ATAGAATGACATTATTTAATTTGATTCCATTC
7337100 A
1 A
7337101 CAATATTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.43
Consensus pattern (32 bp):
ATAGAATGACATTATTTAATTTGATTCCATTC
Found at i:7337108 original size:27 final size:29
Alignment explanation
Indices: 7337046--7337111 Score: 82
Period size: 32 Copynumber: 2.2 Consensus size: 29
7337036 ATAGAATGAC
*
7337046 ATTATTTAATTTGATTCCATTCATAGAATGA
1 ATTATTTAATTTGATTCCATTCA-ACAAT-A
7337077 CATTATTTAATTTGATTCCATTC-ACAAT-
1 -ATTATTTAATTTGATTCCATTCAACAATA
7337105 ATTATTT
1 ATTATTT
7337112 TTTCTTATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
27 7 0.21
30 4 0.12
32 22 0.67
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (29 bp):
ATTATTTAATTTGATTCCATTCAACAATA
Found at i:7343560 original size:34 final size:34
Alignment explanation
Indices: 7343522--7343588 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
7343512 ATTGAAAACA
7343522 ATAAACAAAGA-AAA-TGTAAAAAAAAAAAAGATAG
1 ATAAACAAA-ATAAATTGT-AAAAAAAAAAAGATAG
* *
7343556 ATAAATAAAATAAATTGTAAAAATAAAAAGATA
1 ATAAACAAAATAAATTGTAAAAAAAAAAAGATA
7343589 AAGACAGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 1 0.03
34 25 0.86
35 3 0.10
ACGTcount: A:0.72, C:0.01, G:0.09, T:0.18
Consensus pattern (34 bp):
ATAAACAAAATAAATTGTAAAAAAAAAAAGATAG
Found at i:7343598 original size:40 final size:40
Alignment explanation
Indices: 7343540--7343671 Score: 137
Period size: 40 Copynumber: 3.3 Consensus size: 40
7343530 AGAAAATGTA
* * *
7343540 AAAAAAAAAAAGATAGATAAATAAAATAAATTGTAAAAAT
1 AAAATAAAAAAGAAAGATAAATAAAATAAAGTGTAAAAAT
* * *
7343580 AAAA-AGATAAAGACAGATAAATAAAATAAAGTGTAATAAT
1 AAAATA-AAAAAGAAAGATAAATAAAATAAAGTGTAAAAAT
* *
7343620 AAAATAAAAAATAAAGATAAAT-AAATAAAATAG-AAAAAT
1 AAAATAAAAAAGAAAGATAAATAAAATAAAGT-GTAAAAAT
7343659 AGAAA-AAAAAAGA
1 A-AAATAAAAAAGA
7343672 TAAAGAAGGA
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
39 22 0.28
40 55 0.71
41 1 0.01
ACGTcount: A:0.73, C:0.01, G:0.09, T:0.17
Consensus pattern (40 bp):
AAAATAAAAAAGAAAGATAAATAAAATAAAGTGTAAAAAT
Found at i:7343643 original size:17 final size:16
Alignment explanation
Indices: 7343621--7343675 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
7343611 TGTAATAATA
7343621 AAATAAAAAATAAAGAT
1 AAATAAAAAA-AAAGAT
* *
7343638 AAATAAATAAAATAGAA
1 AAATAAA-AAAAAAGAT
7343655 AAATAGAAAAAAAAAGAT
1 AAAT--AAAAAAAAAGAT
7343673 AAA
1 AAA
7343676 GAAGGAAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
17 15 0.48
18 13 0.42
19 3 0.10
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (16 bp):
AAATAAAAAAAAAGAT
Found at i:7350772 original size:16 final size:16
Alignment explanation
Indices: 7350751--7350782 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7350741 AGTTGTTCTC
7350751 TCTTAGACTAGGCTTG
1 TCTTAGACTAGGCTTG
7350767 TCTTAGACTAGGCTTG
1 TCTTAGACTAGGCTTG
7350783 AATGTCATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (16 bp):
TCTTAGACTAGGCTTG
Found at i:7354397 original size:22 final size:22
Alignment explanation
Indices: 7354371--7354414 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7354361 TTCCCTCCCA
*
7354371 ATATAACATCATATATTAGGAT
1 ATATAACATCACATATTAGGAT
* *
7354393 ATATAATATCACATGTTAGGAT
1 ATATAACATCACATATTAGGAT
7354415 TAAAGCCTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (22 bp):
ATATAACATCACATATTAGGAT
Found at i:7355602 original size:9 final size:9
Alignment explanation
Indices: 7355582--7355610 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7355572 CTTTAAGAAA
7355582 TTTTTATA-
1 TTTTTATAT
7355590 TTTTTATAT
1 TTTTTATAT
7355599 TTTTTATAT
1 TTTTTATAT
7355608 TTT
1 TTT
7355611 AATTTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTATAT
Found at i:7355611 original size:7 final size:8
Alignment explanation
Indices: 7355581--7355610 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
7355571 TCTTTAAGAA
7355581 ATTTTTAT
1 ATTTTTAT
7355589 ATTTTTAT
1 ATTTTTAT
7355597 ATTTTTTAT
1 A-TTTTTAT
7355606 ATTTT
1 ATTTT
7355611 AATTTTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
ATTTTTAT
Found at i:7355619 original size:17 final size:17
Alignment explanation
Indices: 7355582--7355619 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7355572 CTTTAAGAAA
*
7355582 TTTTTATATTTTTATAT
1 TTTTTATATTTTAATAT
7355599 TTTTTATATTTTAAT-T
1 TTTTTATATTTTAATAT
7355615 TTTTT
1 TTTTT
7355620 GGTTTGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTATATTTTAATAT
Found at i:7356863 original size:41 final size:42
Alignment explanation
Indices: 7356812--7356901 Score: 103
Period size: 41 Copynumber: 2.2 Consensus size: 42
7356802 AATAAACAAA
* *
7356812 GCTCCTCTAAACAAAGACGAA-ACAACTTTGAAAAAAT-AATT
1 GCTCTTCTAAACAAAG-CGAACAAAACTTTGAAAAAATAAATT
* * * *
7356853 GGTCTTCTAAATAGAGGGAACAAAACTTTGAAAAAATAAATT
1 GCTCTTCTAAACAAAGCGAACAAAACTTTGAAAAAATAAATT
7356895 GCTCTTC
1 GCTCTTC
7356902 GACAGTGATG
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
40 3 0.08
41 27 0.68
42 10 0.25
ACGTcount: A:0.44, C:0.17, G:0.13, T:0.26
Consensus pattern (42 bp):
GCTCTTCTAAACAAAGCGAACAAAACTTTGAAAAAATAAATT
Found at i:7357051 original size:41 final size:41
Alignment explanation
Indices: 7357006--7357094 Score: 160
Period size: 41 Copynumber: 2.2 Consensus size: 41
7356996 ACCTTTCAGC
*
7357006 TTTGTCAGAATTCACTGAAATTTGATTATCAAAATTTCAAT
1 TTTGTCAGAATTCACTAAAATTTGATTATCAAAATTTCAAT
*
7357047 TTTGTCAGAATTCACTAAAATTTGATTATCAAAATTTCAGT
1 TTTGTCAGAATTCACTAAAATTTGATTATCAAAATTTCAAT
7357088 TTTGTCA
1 TTTGTCA
7357095 AATCTCAAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (41 bp):
TTTGTCAGAATTCACTAAAATTTGATTATCAAAATTTCAAT
Found at i:7364952 original size:8 final size:8
Alignment explanation
Indices: 7364941--7364967 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
7364931 TTTTGCCTTT
7364941 TTTTTTTC
1 TTTTTTTC
7364949 TTTTTTTC
1 TTTTTTTC
7364957 TTTTTTTC
1 TTTTTTTC
7364965 TTT
1 TTT
7364968 CAATTCATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTTC
Found at i:7364954 original size:20 final size:20
Alignment explanation
Indices: 7364931--7364968 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
7364921 AAGATTTCAC
*
7364931 TTTTGCCTTTTTTT-TTTCT
1 TTTTTCCTTTTTTTCTTTCT
*
7364950 TTTTTTCTTTTTTTCTTTC
1 TTTTTCCTTTTTTTCTTTC
7364969 AATTCATCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTTCCTTTTTTTCTTTCT
Found at i:7369835 original size:20 final size:20
Alignment explanation
Indices: 7369806--7369844 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7369796 CTTATTTTAA
7369806 GATTCATTTATATTTATTTG
1 GATTCATTTATATTTATTTG
*
7369826 GATTCGTTTATATTTATTT
1 GATTCATTTATATTTATTT
7369845 AGAATTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.05, G:0.10, T:0.62
Consensus pattern (20 bp):
GATTCATTTATATTTATTTG
Found at i:7369870 original size:14 final size:14
Alignment explanation
Indices: 7369836--7369884 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
7369826 GATTCGTTTA
*
7369836 TATTTATTTAGAATT
1 TATTTGTTTA-AATT
*
7369851 TGTTTGTTTAAATT
1 TATTTGTTTAAATT
*
7369865 TATTTGGTTAAAGTT
1 TATTTGTTTAAA-TT
7369880 TATTT
1 TATTT
7369885 ATTATTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 14 0.48
15 15 0.52
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (14 bp):
TATTTGTTTAAATT
Found at i:7371940 original size:2 final size:2
Alignment explanation
Indices: 7371933--7371959 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7371923 TAAATTACGA
7371933 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
7371960 TTCAATAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7374607 original size:33 final size:29
Alignment explanation
Indices: 7374551--7374625 Score: 77
Period size: 31 Copynumber: 2.6 Consensus size: 29
7374541 TTCATATATT
7374551 TATATTATAT-AAAA-TAATAATAATTTAA
1 TATATTATATAAAAATTAATAATAATTT-A
7374579 TATATTATATAAAAATTACATATTATAATTTA
1 TATATTATATAAAAATTA-ATA--ATAATTTA
7374611 T-T-TTGATATAAAAAT
1 TATATT-ATATAAAAAT
7374626 AAAATTTTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
28 10 0.24
29 4 0.10
30 4 0.10
31 14 0.34
32 2 0.05
33 7 0.17
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (29 bp):
TATATTATATAAAAATTAATAATAATTTA
Found at i:7375268 original size:30 final size:32
Alignment explanation
Indices: 7375215--7375278 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 32
7375205 ATTATATTTT
7375215 ATATAAAAATTATATATTTTAATTTGTA-TAA
1 ATATAAAAATTATATATTTTAATTTGTATTAA
* *
7375246 ATAT-AAAA-TATATTTTTATAATTTTTATTAA
1 ATATAAAAATTATATATTT-TAATTTGTATTAA
7375277 AT
1 AT
7375279 TTATATATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 8 0.28
30 12 0.41
31 9 0.31
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (32 bp):
ATATAAAAATTATATATTTTAATTTGTATTAA
Found at i:7375290 original size:22 final size:23
Alignment explanation
Indices: 7375262--7375320 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
7375252 AATATATTTT
*
7375262 TATAATTTTTATT-AAATTTATA
1 TATAATTTTTATTAAAATTTAAA
7375284 TATAATTATTT-TTAAAATTTAAA
1 TATAATT-TTTATTAAAATTTAAA
*
7375307 TTTAAATTTTTATT
1 TAT-AATTTTTATT
7375321 CTTTATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 9 0.29
23 16 0.52
24 6 0.19
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
TATAATTTTTATTAAAATTTAAA
Found at i:7375312 original size:35 final size:35
Alignment explanation
Indices: 7375246--7375315 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
7375236 ATTTGTATAA
* **
7375246 ATATAAAATATATTTTTATAATTTTTATTAAATTT
1 ATATAAAATATATTTTTAAAATTTAAATTAAATTT
*
7375281 ATATATAAT-TATTTTTAAAATTTAAATTTAAATTT
1 ATATAAAATATATTTTTAAAATTTAAA-TTAAATTT
7375316 TTATTCTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 14 0.47
35 16 0.53
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (35 bp):
ATATAAAATATATTTTTAAAATTTAAATTAAATTT
Found at i:7375362 original size:20 final size:22
Alignment explanation
Indices: 7375323--7375363 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
7375313 TTTTTATTCT
*
7375323 TTATATTTTTAATGTTATTATA
1 TTATATTTTTAATATTATTATA
7375345 TTATA-TTTTAA-ATTATTAT
1 TTATATTTTTAATATTATTAT
7375364 CAAATATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TTATATTTTTAATATTATTATA
Found at i:7377940 original size:21 final size:23
Alignment explanation
Indices: 7377916--7377972 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 23
7377906 TGAAATTTTA
*
7377916 ATTTAAAATTTAT-TAGAT-ATT
1 ATTTAAAATTTATATAAATAATT
*
7377937 ATTTATAA-TTATATAAATAAATT
1 ATTTAAAATTTATATAAAT-AATT
7377960 ATATTAAAATTTA
1 AT-TTAAAATTTA
7377973 AGTTTTTAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 4 0.14
21 11 0.39
23 5 0.18
24 5 0.18
25 3 0.11
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
ATTTAAAATTTATATAAATAATT
Found at i:7378496 original size:14 final size:15
Alignment explanation
Indices: 7378463--7378501 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
7378453 CAAATGCTTG
7378463 TAATTT-ATTTTAAT
1 TAATTTAATTTTAAT
*
7378477 TTATTTAATTTTAA-
1 TAATTTAATTTTAAT
7378491 TAATTTAATTT
1 TAATTTAATTT
7378502 GATAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 15 0.68
15 7 0.32
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TAATTTAATTTTAAT
Found at i:7382145 original size:28 final size:28
Alignment explanation
Indices: 7382104--7382160 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
7382094 CAGGTAAGTG
*
7382104 TTTTCCTTAAATTCCCGACATTTTAAAC
1 TTTTCCTTAAATTCCAGACATTTTAAAC
*
7382132 TTTTCCTTACATTCCAGACATTTTAAAC
1 TTTTCCTTAAATTCCAGACATTTTAAAC
7382160 T
1 T
7382161 ATCTTCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.04, T:0.44
Consensus pattern (28 bp):
TTTTCCTTAAATTCCAGACATTTTAAAC
Found at i:7384464 original size:2 final size:2
Alignment explanation
Indices: 7384457--7384481 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7384447 ACAAACATAC
7384457 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7384482 AATAAGTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7386831 original size:21 final size:21
Alignment explanation
Indices: 7386805--7386847 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7386795 CTAAATATAC
7386805 AATTAAATAAAGATTTATCAA
1 AATTAAATAAAGATTTATCAA
7386826 AATTAAATAAAGATTTATCAA
1 AATTAAATAAAGATTTATCAA
7386847 A
1 A
7386848 TAAATTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (21 bp):
AATTAAATAAAGATTTATCAA
Found at i:7387846 original size:19 final size:19
Alignment explanation
Indices: 7387824--7387860 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7387814 TTAGTATTAT
7387824 TTTCTATTTTAGCTTTTGA
1 TTTCTATTTTAGCTTTTGA
* *
7387843 TTTCTGTTTTAGTTTTTG
1 TTTCTATTTTAGCTTTTG
7387861 GTTTATTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.08, G:0.14, T:0.68
Consensus pattern (19 bp):
TTTCTATTTTAGCTTTTGA
Found at i:7388315 original size:25 final size:23
Alignment explanation
Indices: 7388264--7388315 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
7388254 TTGGTGTTTG
*
7388264 TTTTGGTTTTTATATTTTTGGGT
1 TTTTGGTTTTTATATTTTTGGGA
*
7388287 TTTTGTTTTTTATATGATTTTGGGA
1 TTTTGGTTTTTATAT--TTTTGGGA
7388312 TTTT
1 TTTT
7388316 AGGGTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 14 0.56
25 11 0.44
ACGTcount: A:0.12, C:0.00, G:0.19, T:0.69
Consensus pattern (23 bp):
TTTTGGTTTTTATATTTTTGGGA
Found at i:7388365 original size:20 final size:19
Alignment explanation
Indices: 7388340--7388383 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
7388330 GTTTCTGAGA
7388340 TTTTGGATTTGGGTTGAATT
1 TTTTGGATTTGGGTT-AATT
* * *
7388360 TTTTGGGTTTTGGTTTATT
1 TTTTGGATTTGGGTTAATT
7388379 TTTTG
1 TTTTG
7388384 AAATTATGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.09, C:0.00, G:0.27, T:0.64
Consensus pattern (19 bp):
TTTTGGATTTGGGTTAATT
Found at i:7388901 original size:21 final size:20
Alignment explanation
Indices: 7388796--7388974 Score: 94
Period size: 21 Copynumber: 8.7 Consensus size: 20
7388786 GTGCTCATTA
* * *
7388796 ATATAATTTTGCTAATTTTT
1 ATATAATTTTGATAACTTTG
* *
7388816 A-ATAAATTTTTAATAAGTTTG
1 ATAT-AA-TTTTGATAACTTTG
* * * *
7388837 ATACAATTTTGATAGCCTATA
1 ATATAATTTTGATA-ACTTTG
* * *
7388858 ATACAATTTTGGTAGCTTATG
1 ATATAATTTTGATAACTT-TG
*
7388879 ATATAATTTTGATAACCATTG
1 ATATAATTTTGATAA-CTTTG
*
7388900 ATATAATTTTGGTAACTTTAG
1 ATATAATTTTGATAACTTT-G
*
7388921 ATATAATTTT-AGTAAGTTTTG
1 ATATAATTTTGA-TAA-CTTTG
* *
7388942 ATATAA-TTTGATAATTTTTT
1 ATATAATTTTGATAA-CTTTG
*
7388962 ATTTAATTTTGAT
1 ATATAATTTTGAT
7388975 TTTAATAACC
Statistics
Matches: 123, Mismatches: 25, Indels: 21
0.73 0.15 0.12
Matches are distributed among these distances:
19 2 0.02
20 30 0.24
21 85 0.69
22 6 0.05
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.50
Consensus pattern (20 bp):
ATATAATTTTGATAACTTTG
Found at i:7388908 original size:42 final size:41
Alignment explanation
Indices: 7388833--7388930 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 41
7388823 TTTTAATAAG
* * *
7388833 TTTGATACAATTTTGATAGCCTATAATACAATTTTGGTAGC
1 TTTGATATAATTTTGATAACCTATAATACAATTTTGGTAAC
* *
7388874 TTATGATATAATTTTGATAACC-ATTGATATAATTTTGGTAAC
1 TT-TGATATAATTTTGATAACCTA-TAATACAATTTTGGTAAC
7388916 TTTAGATATAATTTT
1 TTT-GATATAATTTT
7388931 AGTAAGTTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
41 4 0.08
42 45 0.92
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.46
Consensus pattern (41 bp):
TTTGATATAATTTTGATAACCTATAATACAATTTTGGTAAC
Found at i:7389257 original size:21 final size:19
Alignment explanation
Indices: 7389233--7389293 Score: 50
Period size: 21 Copynumber: 2.9 Consensus size: 19
7389223 TATAACTTTG
*
7389233 GTAATTTTTTATAAATTTTTA
1 GTAA-TTTTAATAAA-TTTTA
* *
7389254 GTAAGTTTGATATAATTTTA
1 GTAATTTTAATA-AATTTTA
7389274 GTAACTTTTAATAAAATTTT
1 GTAA-TTTTAAT-AAATTTT
7389294 GATAATCTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 15 0.45
21 17 0.52
22 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.54
Consensus pattern (19 bp):
GTAATTTTAATAAATTTTA
Found at i:7389429 original size:329 final size:324
Alignment explanation
Indices: 7388863--7389876 Score: 1157
Period size: 350 Copynumber: 3.0 Consensus size: 324
7388853 CTATAATACA
* * **
7388863 ATTTTGGTAGCTTATGATATAATTTTGA-TAACCATTGATATAATTTTGGTAACTTTAGATATAA
1 ATTTTGGTAACTTATGATATAA-TTTGAGTAACCATTTATATAATTTTGGTAACTTTTCATA-AA
* * * **
7388927 TTTTAGTAAGTTTTGATATAATTTGA-TAATTTTTTATTTAATTTTGAT--T-TT--A-ATAACC
64 TTTTAGTAAG-TTTGATATAATTTTAGTAACTTTTAATAAAATTTTGATAATCTTAGATATAACC
**
7388985 TTTTATATATTGTGATGACCTTTATTAGAAAA-TTGATAACAGTTAATAAAATCCGGTAATGTTT
128 TTTTATATATTGTGATGACCTTTATTA-AAAATTTGATAACAGTTAATAAAATTTGGTAATGTTT
* * *
7389049 AATACTTTTTTGGTAACCTTTGATAAAACTTGATAGCTTTTTATATAATTTTGATTTTGATAACT
192 AATACTATTTTGGTAA-CTTTGATATAACTTGATAAC-TTTTATATAATTTTGATTTTGATAACT
* * *
7389114 TTTGATATATTGTGGTTACTTTTATTAGAAGTTTTATAGCATTTGATAAAATTTTAATAACCTTT
255 TTTGATATATTGTGGTAACCTTTATTAGAAGTTTTATAGCATTTCATAAAATTTTAATAACCTTT
7389179 ACTTAT
320 AC-TAT
* * * * *
7389185 ATTTTGGTAATTTATGATATAGTTTGAGTAACCATTTATATAACTTTGGTAATTTTTTATAAATT
1 ATTTTGGTAACTTATGATATAATTTGAGTAACCATTTATATAATTTTGGTAACTTTTCATAAA-T
7389250 TTTAGTAAGTTTGATATAATTTTAGTAACTTTTAATAAAATTTTGATAATCTTAGATATGAACCT
65 TTTAGTAAGTTTGATATAATTTTAGTAACTTTTAATAAAATTTTGATAATCTTAGATAT-AACCT
** ** *
7389315 TTTATATATTGTGATGACCTTTATTAAAAATTTGATAACAGTTAATAAAATTTAATAACATTGAA
129 TTTATATATTGTGATGACCTTTATTAAAAATTTGATAACAGTTAATAAAATTTGGTAATGTTTAA
* * * *
7389380 TACTATTTTGGTCATCTTTGATATAATTTGATAACTTTTAATGTAATTTTGATTTTGATAAATTT
194 TACTATTTTGGT-AACTTTGATATAACTTGATAACTTTT-ATATAATTTTGATTTTGATAACTTT
* *
7389445 TGATATATTGTGGTAACCATTATTAGAAGTTTTATAACATTTCATAAAAGTTTAGTAACCTTTAA
257 TGATATATTGTGGTAACCTTTATTAGAAGTTTTATAGCATTTCAT---A----A--AA---TT--
7389510 TATAATTTTGGTAACCTTTACTAGT
308 T-TAA------TAACCTTTACTA-T
* * *
7389535 ATTTTAGTAACTTATGATATAATTTGAGTAACCATTTATATAATTTTAGTAACCTTTCATAAAAT
1 ATTTTGGTAACTTATGATATAATTTGAGTAACCATTTATATAATTTTGGTAACTTTTCAT-AAAT
* * * * * *
7389600 TTTAGTAAGTTTGATATAA-TTTCGAAAACTTTTAATACAATTTTGGTAATCTTAGATACAAATC
65 TTTAGTAAGTTTGATATAATTTTAG-TAACTTTTAATAAAATTTTGATAATCTTAGATA-TAACC
* *
7389664 TTTTATATATTGTGATGACCATTATTAGAAATTTGATAACAGTTAATAAAATTTGGTAATGTTTA
128 TTTTATATATTGTGATGACCTTTATTAAAAATTTGATAACAGTTAATAAAATTTGGTAATGTTTA
* *
7389729 ATACTATTTTAGTAACTTTTGATATAACTTGATAACCTTTTATATAATTTTGATTTTGATCACTT
193 ATACTATTTTGGTAAC-TTTGATATAACTTGATAA-CTTTTATATAATTTTGATTTTGATAACTT
* * *
7389794 TTTATATATTATGGTAACCTTTATTAGAAGTTTTATAGCATTTCATAAAATTTTAGTAACCTTTA
256 TTGATATATTGTGGTAACCTTTATTAGAAGTTTTATAGCATTTCATAAAATTTTAATAACCTTTA
*
7389859 ATAT
321 CTAT
7389863 AATTTTGGTAACTT
1 -ATTTTGGTAACTT
7389877 TTATTACTAT
Statistics
Matches: 585, Mismatches: 66, Indels: 75
0.81 0.09 0.10
Matches are distributed among these distances:
321 21 0.04
322 75 0.13
324 1 0.00
325 2 0.00
327 1 0.00
328 11 0.02
329 172 0.29
330 1 0.00
332 1 0.00
335 2 0.00
336 2 0.00
338 4 0.01
341 4 0.01
343 2 0.00
344 3 0.01
347 1 0.00
349 8 0.01
350 266 0.45
351 8 0.01
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.47
Consensus pattern (324 bp):
ATTTTGGTAACTTATGATATAATTTGAGTAACCATTTATATAATTTTGGTAACTTTTCATAAATT
TTAGTAAGTTTGATATAATTTTAGTAACTTTTAATAAAATTTTGATAATCTTAGATATAACCTTT
TATATATTGTGATGACCTTTATTAAAAATTTGATAACAGTTAATAAAATTTGGTAATGTTTAATA
CTATTTTGGTAACTTTGATATAACTTGATAACTTTTATATAATTTTGATTTTGATAACTTTTGAT
ATATTGTGGTAACCTTTATTAGAAGTTTTATAGCATTTCATAAAATTTTAATAACCTTTACTAT
Found at i:7389503 original size:21 final size:20
Alignment explanation
Indices: 7389495--7389621 Score: 125
Period size: 21 Copynumber: 6.1 Consensus size: 20
7389485 TTCATAAAAG
7389495 TTTAGTAACCTTTAATATAAT
1 TTTAGTAACCTTT-ATATAAT
*
7389516 TTTGGTAACCTTTACTAGT-AT
1 TTTAGTAACCTTTA-TA-TAAT
7389537 TTTAGTAA-CTTATGATATAAT
1 TTTAGTAACCTT-T-ATATAAT
*
7389558 TTGAGTAACCATTTATATAAT
1 TTTAGTAACC-TTTATATAAT
*
7389579 TTTAGTAACCTTTCATAAAAT
1 TTTAGTAACCTTT-ATATAAT
*
7389600 TTTAGTAA-GTTTGATATAAT
1 TTTAGTAACCTTT-ATATAAT
7389620 TT
1 TT
7389622 CGAAAACTTT
Statistics
Matches: 90, Mismatches: 8, Indels: 17
0.78 0.07 0.15
Matches are distributed among these distances:
20 19 0.21
21 65 0.72
22 4 0.04
23 2 0.02
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (20 bp):
TTTAGTAACCTTTATATAAT
Found at i:7389565 original size:63 final size:63
Alignment explanation
Indices: 7389498--7389648 Score: 184
Period size: 63 Copynumber: 2.4 Consensus size: 63
7389488 ATAAAAGTTT
**
7389498 AGTAACCTTTAATATAATTTTGGTAACCTTT-ACTAGTATTTTAGTAACTTATGATATAATTT-G
1 AGTAACCTTTAATATAATTTTGGTAACCTTTCA-TAAAATTTTAGTAACTT-TGATATAATTTCG
* *
7389561 AGTAACCATTT-ATATAATTTTAGTAACCTTTCATAAAATTTTAGTAAGTTTGATATAATTTCG
1 AGTAACC-TTTAATATAATTTTGGTAACCTTTCATAAAATTTTAGTAACTTTGATATAATTTCG
* * *
7389624 A-AAACTTTTAATACAATTTTGGTAA
1 AGTAACCTTTAATATAATTTTGGTAA
7389649 TCTTAGATAC
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
61 3 0.04
62 27 0.36
63 42 0.55
64 4 0.05
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.44
Consensus pattern (63 bp):
AGTAACCTTTAATATAATTTTGGTAACCTTTCATAAAATTTTAGTAACTTTGATATAATTTCG
Found at i:7389781 original size:21 final size:21
Alignment explanation
Indices: 7389744--7390014 Score: 62
Period size: 21 Copynumber: 12.7 Consensus size: 21
7389734 ATTTTAGTAA
*
7389744 CTTTTGATATAA-CTTGATAAC
1 CTTTT-ATATAATTTTGATAAC
*
7389765 CTTTTATATAATTTTGATTTTGATC
1 CTTTTATATAATTTTGA---T-AAC
* *
7389790 ACTTTT-TATATATTATGGTAAC
1 -CTTTTATATA-ATTTTGATAAC
* *
7389812 C-TTTATTAGAAGTTTT-ATAGC
1 CTTTTA-TATAA-TTTTGATAAC
* * *
7389833 ATTTCATAAAATTTT-AGTAAC
1 CTTTTATATAATTTTGA-TAAC
* *
7389854 CTTTAATATAATTTTGGTAA-
1 CTTTTATATAATTTTGATAAC
*
7389874 CTTTTAT-TACTATTTTGGTAA-
1 CTTTTATATA--ATTTTGATAAC
*
7389895 CTTATTATATAA-TTCGAGTAAC
1 CTT-TTATATAATTTTGA-TAAC
* * **
7389917 CATTCATATAATTTTTTTAA-
1 CTTTTATATAATTTTGATAAC
* * *
7389937 CTTTTAATACAATTTTGGTAAT
1 CTTTT-ATATAATTTTGATAAC
** * *
7389959 CTTAGATACAGTTTTGATAA-
1 CTTTTATATAATTTTGATAAC
* * *
7389979 GTTTTGATATAATTATGATATC
1 CTTTT-ATATAATTTTGATAAC
*
7390001 CTTTGAT-TAATTTT
1 CTTTTATATAATTTT
7390015 TGTTTTGGTA
Statistics
Matches: 182, Mismatches: 44, Indels: 49
0.66 0.16 0.18
Matches are distributed among these distances:
19 2 0.01
20 34 0.19
21 101 0.55
22 25 0.14
23 3 0.02
24 1 0.01
25 6 0.03
26 10 0.05
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (21 bp):
CTTTTATATAATTTTGATAAC
Found at i:7390228 original size:21 final size:20
Alignment explanation
Indices: 7390204--7390255 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
7390194 TATGATATAC
* *
7390204 TTTTAGTAATTATTTATAGCA
1 TTTTGGTAATT-TTAATAGCA
7390225 TTTTGGTAACTTTTAATAGCA
1 TTTTGGTAA-TTTTAATAGCA
7390246 TTTTGGTAAT
1 TTTTGGTAAT
7390256 ATTAGGTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 1 0.04
21 25 0.89
22 2 0.07
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (20 bp):
TTTTGGTAATTTTAATAGCA
Found at i:7390399 original size:61 final size:61
Alignment explanation
Indices: 7390326--7390458 Score: 180
Period size: 61 Copynumber: 2.2 Consensus size: 61
7390316 TTTGTTAATG
* * * *
7390326 TTTGATATAATTTGGTAACCTTAAATACA-GTTTTGATAACTTTTGATACAA-TTTAATAACC
1 TTTGATATAATTTGCTAACC--AAAGAAATGTTTTGATAACTTTTAATACAATTTTAATAACC
*
7390387 TTTGATGTAATTTGCTAACCAAAGAAATTGTTTTGATAACTTTTAATACAATTTTAATAACC
1 TTTGATATAATTTGCTAACCAAAGAAA-TGTTTTGATAACTTTTAATACAATTTTAATAACC
7390449 TTTGATATAA
1 TTTGATATAA
7390459 CTTAATAATT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
59 5 0.08
61 39 0.62
62 19 0.30
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.43
Consensus pattern (61 bp):
TTTGATATAATTTGCTAACCAAAGAAATGTTTTGATAACTTTTAATACAATTTTAATAACC
Found at i:7390510 original size:21 final size:21
Alignment explanation
Indices: 7390484--7390837 Score: 64
Period size: 21 Copynumber: 17.1 Consensus size: 21
7390474 TATAATTTTG
7390484 ATTTTGATAAACTTTGATATA
1 ATTTTGATAAACTTTGATATA
*
7390505 ATTTTGAT----TTTGATAAA
1 ATTTTGATAAACTTTGATATA
* * *
7390522 ATTTT-TTAACCTTTGTTA-A
1 ATTTTGATAAACTTTGATATA
* * * *
7390541 ACGTTTGATAACCTTTAATAAA
1 A-TTTTGATAAACTTTGATATA
* **
7390563 ATTTT-AGT-AGCGTTTGATACG
1 ATTTTGA-TAAAC-TTTGATATA
* * * *
7390584 ATTTTGGTAATCATTGATACA
1 ATTTTGATAAACTTTGATATA
*
7390605 ATCTCTT--T-AACTTATGCTATA
1 AT-T-TTGATAAACTT-TGATATA
* *
7390626 ATTTT-AGTAATCATTGATATA
1 ATTTTGA-TAAACTTTGATATA
*
7390647 ATTTTGAT-AACTTTGATAAA
1 ATTTTGATAAACTTTGATATA
* * *
7390667 ATTTTGGT-AACCTTGAATACA
1 ATTTTGATAAACTTTG-ATATA
* *
7390688 ATTTT-AGTAACCTTTGATATT
1 ATTTTGA-TAAACTTTGATATA
* * *
7390709 TTTTTGGT-AACTAATGATATA
1 ATTTTGATAAACT-TTGATATA
* * * * *
7390730 ATATTGGTAATCATTGATACA
1 ATTTTGATAAACTTTGATATA
* * *
7390751 ATTTTGGTAACCTTTGACA-A
1 ATTTTGATAAACTTTGATATA
* *
7390771 GATTTTGCTAATA-TATTAATATA
1 -ATTTTGATAA-ACT-TTGATATA
* * *
7390794 ATTTTGGTAAATTTTAATA-A
1 ATTTTGATAAACTTTGATATA
* *
7390814 ATTTTGGT-AATTTATGATATA
1 ATTTTGATAAACTT-TGATATA
7390835 ATT
1 ATT
7390838 AATTAGTATT
Statistics
Matches: 247, Mismatches: 55, Indels: 62
0.68 0.15 0.17
Matches are distributed among these distances:
16 1 0.00
17 13 0.05
19 9 0.04
20 55 0.22
21 136 0.55
22 30 0.12
23 3 0.01
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.46
Consensus pattern (21 bp):
ATTTTGATAAACTTTGATATA
Found at i:7390658 original size:42 final size:41
Alignment explanation
Indices: 7390575--7390689 Score: 110
Period size: 42 Copynumber: 2.8 Consensus size: 41
7390565 TTTAGTAGCG
**
7390575 TTTGATACGATTTTGGTAATCATTGATACAATCTCTTTAAC
1 TTTGATAAAATTTTGGTAATCATTGATACAATCTCTTTAAC
* * * *
7390616 TTATGCTATAATTTTAGTAATCATTGATATAAT-T-TTGATAAC
1 TT-TGATAAAATTTTGGTAATCATTGATACAATCTCTT--TAAC
*
7390658 TTTGATAAAATTTTGGTAA-CCTTGAATACAAT
1 TTTGATAAAATTTTGGTAATCATTG-ATACAAT
7390690 TTTAGTAACC
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
40 6 0.10
41 23 0.38
42 31 0.52
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.44
Consensus pattern (41 bp):
TTTGATAAAATTTTGGTAATCATTGATACAATCTCTTTAAC
Found at i:7390705 original size:104 final size:104
Alignment explanation
Indices: 7390544--7390777 Score: 240
Period size: 104 Copynumber: 2.2 Consensus size: 104
7390534 TTGTTAAACG
* * * * * * *
7390544 TTTGATAACCTTTAATAAAATTTTAGTAGCGTTTGATACGATTTTGGTAATCATTGATACAATCT
1 TTTGATAACCTTTGATAAAATTTTGGTAACGCTTGATACAATTTTAGTAACCATTGAT--AATCT
* * * *
7390609 CTT-TAACTTATGCTATAATTTTAGTAATCATTGATATAAT
64 CTTGTAACTAATGATATAATATTAGTAATCATTGATACAAT
* * * *
7390649 TTTGATAA-CTTTGATAAAATTTTGGTAAC-CTTGAATACAATTTTAGTAACCTTTGATATTTTT
1 TTTGATAACCTTTGATAAAATTTTGGTAACGCTTG-ATACAATTTTAGTAACCATTGATAATCTC
*
7390712 TTGGTAACTAATGATATAATATTGGTAATCATTGATACAAT
65 TT-GTAACTAATGATATAATATTAGTAATCATTGATACAAT
* * *
7390753 TTTGGTAACCTTTGACAAGATTTTG
1 TTTGATAACCTTTGATAAAATTTTG
7390778 CTAATATATT
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
102 5 0.05
103 3 0.03
104 76 0.72
105 22 0.21
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (104 bp):
TTTGATAACCTTTGATAAAATTTTGGTAACGCTTGATACAATTTTAGTAACCATTGATAATCTCT
TGTAACTAATGATATAATATTAGTAATCATTGATACAAT
Found at i:7390761 original size:63 final size:62
Alignment explanation
Indices: 7390625--7390767 Score: 171
Period size: 63 Copynumber: 2.3 Consensus size: 62
7390615 CTTATGCTAT
* * * * *
7390625 AATTTTAGTAATCATTGATATAATTTTGATAACTTTGATAAAATTTTGGTAACCTTGAATAC
1 AATTTTAGTAACCTTTGATATAATTTTGATAACTATGATAAAATATTGGTAACATTGAATAC
** * *
7390687 AATTTTAGTAACCTTTGATATTTTTTTGGTAACTAATGATATAATATTGGTAATCATTG-ATAC
1 AATTTTAGTAACCTTTGATATAATTTTGATAACT-ATGATAAAATATTGGTAA-CATTGAATAC
*
7390750 AATTTTGGTAACCTTTGA
1 AATTTTAGTAACCTTTGA
7390768 CAAGATTTTG
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
62 29 0.42
63 36 0.52
64 4 0.06
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (62 bp):
AATTTTAGTAACCTTTGATATAATTTTGATAACTATGATAAAATATTGGTAACATTGAATAC
Found at i:7390777 original size:63 final size:63
Alignment explanation
Indices: 7390625--7390803 Score: 159
Period size: 63 Copynumber: 2.8 Consensus size: 63
7390615 CTTATGCTAT
* * * * * *
7390625 AATTTTAGTAATCATTGATATA-ATTTTGATAACT-TTGATAAAATTTTGGTAACCTTGAATAC
1 AATTTTAGTAACCTTTGACA-AGATTTTGATAACTAATGATATAATTTTGGTAACATTGAATAC
* *** * *
7390687 AATTTTAGTAACCTTTGATATTTTTTTGGTAACTAATGATATAATATTGGTAATCATTG-ATAC
1 AATTTTAGTAACCTTTGACAAGATTTTGATAACTAATGATATAATTTTGGTAA-CATTGAATAC
* * *
7390750 AATTTTGGTAACCTTTGACAAGATTTTGCTAA-TATATTAATATAATTTTGGTAA
1 AATTTTAGTAACCTTTGACAAGATTTTGATAACTA-A-TGATATAATTTTGGTAA
7390804 ATTTTAATAA
Statistics
Matches: 95, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
62 30 0.32
63 46 0.48
64 19 0.20
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (63 bp):
AATTTTAGTAACCTTTGACAAGATTTTGATAACTAATGATATAATTTTGGTAACATTGAATAC
Found at i:7390818 original size:20 final size:22
Alignment explanation
Indices: 7390772--7390837 Score: 75
Period size: 20 Copynumber: 3.1 Consensus size: 22
7390762 CTTTGACAAG
*
7390772 ATTTTGCTAATATATTAATATA
1 ATTTTGGTAATATATTAATATA
*
7390794 ATTTTGGTAA-ATTTTAATA-A
1 ATTTTGGTAATATATTAATATA
* *
7390814 ATTTTGGTAATTTA-TGATATA
1 ATTTTGGTAATATATTAATATA
7390835 ATT
1 ATT
7390838 AATTAGTATT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
20 15 0.41
21 13 0.35
22 9 0.24
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.52
Consensus pattern (22 bp):
ATTTTGGTAATATATTAATATA
Found at i:7390825 original size:19 final size:20
Alignment explanation
Indices: 7390622--7390837 Score: 76
Period size: 21 Copynumber: 10.3 Consensus size: 20
7390612 TAACTTATGC
* * *
7390622 TATAATTTTAGTAATCATTGA
1 TATAATTTTGGTAAT-TTTAA
* * *
7390643 TATAATTTTGATAACTTTGA
1 TATAATTTTGGTAATTTTAA
* * *
7390663 TAAAATTTTGGTAACCTTGAA
1 TATAATTTTGGTAA-TTTTAA
* * * *
7390684 TACAATTTTAGTAACCTTTGA
1 TATAATTTTGGTAA-TTTTAA
** ** *
7390705 TATTTTTTTGGTAACTAATGA
1 TATAATTTTGGTAA-TTTTAA
* * *
7390726 TATAATATTGGTAATCATTGA
1 TATAATTTTGGTAAT-TTTAA
* * *
7390747 TACAATTTTGGTAACCTTTGA
1 TATAATTTTGGTAA-TTTTAA
* *
7390768 CA-AGATTTTGCTAATATATTAA
1 TATA-ATTTTGGTAAT-T-TTAA
7390790 TATAATTTTGGTAAATTTTAA
1 TATAATTTTGGT-AATTTTAA
*
7390811 TA-AATTTTGGTAATTTATGA
1 TATAATTTTGGTAATTT-TAA
7390831 TATAATT
1 TATAATT
7390838 AATTAGTATT
Statistics
Matches: 151, Mismatches: 34, Indels: 20
0.74 0.17 0.10
Matches are distributed among these distances:
19 5 0.03
20 31 0.21
21 99 0.66
22 12 0.08
23 4 0.03
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.46
Consensus pattern (20 bp):
TATAATTTTGGTAATTTTAA
Found at i:7391470 original size:22 final size:21
Alignment explanation
Indices: 7391421--7391491 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 21
7391411 AACTCTATGC
*
7391421 TAAATCAATTATAATTTAGT-T
1 TAAATCAA-TATAACTTAGTAT
*
7391442 GTGAATCAATGATAACTTAGTAT
1 -TAAATCAAT-ATAACTTAGTAT
*
7391465 TAAATCAATATTAACTTAGTAG
1 TAAATCAATA-TAACTTAGTAT
7391487 TAAAT
1 TAAAT
7391492 TATTATTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
21 2 0.05
22 39 0.93
23 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (21 bp):
TAAATCAATATAACTTAGTAT
Found at i:7391560 original size:11 final size:11
Alignment explanation
Indices: 7391487--7391566 Score: 52
Period size: 11 Copynumber: 7.3 Consensus size: 11
7391477 AACTTAGTAG
* *
7391487 TAAATTATTAT
1 TAAATTAATAA
* *
7391498 TAATTTAATAG
1 TAAATTAATAA
* *
7391509 TAAATTATTGA
1 TAAATTAATAA
* *
7391520 TAACTTAATAG
1 TAAATTAATAA
* * *
7391531 TAAATCATTCA
1 TAAATTAATAA
*
7391542 TAACTTAATAA
1 TAAATTAATAA
7391553 TAAATTAATAA
1 TAAATTAATAA
7391564 TAA
1 TAA
7391567 GTATTAACTT
Statistics
Matches: 48, Mismatches: 21, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
11 48 1.00
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (11 bp):
TAAATTAATAA
Done.