Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 37 of 147
Found at i:7544144 original size:46 final size:43
Alignment explanation
Indices: 7544088--7544178 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 43
7544078 TAAATTCATG
*
7544088 AATCCTACCAAACTATT-GGAGAATTTTCATGAATTAAATCTTTATGA
1 AATCCTACCAAACTATTAGGA-AA-TTTCAT-AAATAAAT-TTTA-GA
7544135 AATCC-ACCAAACTATTAGGAAATTTCATAAATAAATTTTAGA
1 AATCCTACCAAACTATTAGGAAATTTCATAAATAAATTTTAGA
7544177 AA
1 AA
7544179 AAAATAAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
42 4 0.10
43 4 0.10
44 7 0.17
45 6 0.14
46 13 0.31
47 8 0.19
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (43 bp):
AATCCTACCAAACTATTAGGAAATTTCATAAATAAATTTTAGA
Found at i:7546896 original size:22 final size:22
Alignment explanation
Indices: 7546841--7546888 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
7546831 AATTTAAACA
* * *
7546841 AAATCAGTAATAACTTTATATT
1 AAATCAATGATAACTGTATATT
7546863 AAATCAATGATAACTGTATATT
1 AAATCAATGATAACTGTATATT
7546885 AAAT
1 AAAT
7546889 TATGGATAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (22 bp):
AAATCAATGATAACTGTATATT
Found at i:7547133 original size:22 final size:22
Alignment explanation
Indices: 7547041--7547135 Score: 77
Period size: 22 Copynumber: 4.4 Consensus size: 22
7547031 AACGATATTG
*
7547041 TAGTAAATTAAGGATAATTTAA
1 TAGTAAATTAATGATAATTTAA
* *
7547063 TA--AAAATAAGTGATAACTTAA
1 TAGTAAATTAA-TGATAATTTAA
* ** * *
7547084 TATTAAATCCATGATAACTTAG
1 TAGTAAATTAATGATAATTTAA
* *
7547106 TCGTAAATTAATAATAATTTAA
1 TAGTAAATTAATGATAATTTAA
7547128 TAGTAAAT
1 TAGTAAAT
7547136 AAAATACAGT
Statistics
Matches: 55, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
20 6 0.11
21 11 0.20
22 34 0.62
23 4 0.07
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.36
Consensus pattern (22 bp):
TAGTAAATTAATGATAATTTAA
Found at i:7547470 original size:22 final size:22
Alignment explanation
Indices: 7547413--7547474 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 22
7547403 AGGGAGTAGT
*
7547413 AATTAATTGATAAATTTAATAGTA
1 AATTAA-TGAT-AATTTAATAATA
7547437 AATCATAA--ATAATTTAATAATA
1 AAT--TAATGATAATTTAATAATA
7547459 AATTAATGATAATTTA
1 AATTAATGATAATTTA
7547475 GTGGTAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
20 3 0.09
22 22 0.67
23 2 0.06
24 3 0.09
26 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (22 bp):
AATTAATGATAATTTAATAATA
Found at i:7547658 original size:22 final size:22
Alignment explanation
Indices: 7547600--7548110 Score: 171
Period size: 22 Copynumber: 23.3 Consensus size: 22
7547590 GTAAATTGTA
* * *
7547600 ATAACTTACTAGTATATCAAT-
1 ATAATTTAATAGTAAATCAATG
* *
7547621 AGTAATTTGATTGTAAAT-AATTG
1 A-TAATTTAATAGTAAATCAA-TG
* *
7547644 ATAATTTAGTAGTAAATCAATA
1 ATAATTTAATAGTAAATCAATG
* *
7547666 ATAATATAATAGTAAATGC-ATA
1 ATAATTTAATAGTAAAT-CAATG
* *
7547688 ATAACTTAATAGTAAATCAATT
1 ATAATTTAATAGTAAATCAATG
** * ** *
7547710 ATAACATAATTGTAAATGTATA
1 ATAATTTAATAGTAAATCAATG
*** * *
7547732 ATAGCATAGTAGTAAATGAATG
1 ATAATTTAATAGTAAATCAATG
* * *
7547754 ATAACTTT-ATAATTAATCATTG
1 ATAA-TTTAATAGTAAATCAATG
7547776 ATAATTTAATAGTAAATCAATG
1 ATAATTTAATAGTAAATCAATG
* * *
7547798 AAAATTTAGTAGTAAATTACA-G
1 ATAATTTAATAGTAAATCA-ATG
* * *
7547820 ATAACTTAATAGTAAATCAGTT
1 ATAATTTAATAGTAAATCAATG
* * * * * *
7547842 TTAGTTTAGTAGTAATTAAATT
1 ATAATTTAATAGTAAATCAATG
* ** *
7547864 ATAAGCTTAGCAGTAAATC-ATAA
1 ATAA-TTTAATAGTAAATCAAT-G
* ** *
7547887 ATAACTTAGCAATAAATCAATG
1 ATAATTTAATAGTAAATCAATG
* *
7547909 ATAATTTAATAGTTAATCACT-
1 ATAATTTAATAGTAAATCAATG
* * * *
7547930 AAAACTCAATAGTAAATCAATA
1 ATAATTTAATAGTAAATCAATG
* * * * *
7547952 ATAATATAGTCGCAAATGC-ATA
1 ATAATTTAATAGTAAAT-CAATG
* * * * *
7547974 ACAGTAT-CTAGTAAATCATTG
1 ATAATTTAATAGTAAATCAATG
* *
7547995 ATAATTTAATAGTAAATTATTG
1 ATAATTTAATAGTAAATCAATG
* * * *
7548017 ATGATTTAGTAGTAAATCACTA
1 ATAATTTAATAGTAAATCAATG
** * *
7548039 ATAACGTCATAGTAAATCATTG
1 ATAATTTAATAGTAAATCAATG
* * *
7548061 ATAACTTAGCTA-TAAATCAGTG
1 ATAATTTA-ATAGTAAATCAATG
* *
7548083 ATAATTTAGTTA-TAAATTAATG
1 ATAATTTA-ATAGTAAATCAATG
7548105 ATAATT
1 ATAATT
7548111 AAGTTGTAAA
Statistics
Matches: 362, Mismatches: 110, Indels: 35
0.71 0.22 0.07
Matches are distributed among these distances:
20 1 0.00
21 34 0.09
22 302 0.83
23 25 0.07
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.36
Consensus pattern (22 bp):
ATAATTTAATAGTAAATCAATG
Found at i:7547703 original size:66 final size:66
Alignment explanation
Indices: 7547633--7547836 Score: 207
Period size: 66 Copynumber: 3.1 Consensus size: 66
7547623 TAATTTGATT
* * *
7547633 GTAAATAATTGATAATTTAGTAGTAAATCAATAATAATATAATAGTAAATGCATAATAACTTAAT
1 GTAAATAATTGATAATTTAATAGTAAATCAATAATAATATAGTAGTAAATGCATGATAACTTAAT
7547698 A
66 A
** * ** ** * *
7547699 GTAAATCAATT-ATAACATAATTGTAAATGTATAATAGCATAGTAGTAAATGAATGATAACTTTA
1 GTAAAT-AATTGATAATTTAATAGTAAATCAATAATAATATAGTAGTAAATGCATGATAACTTAA
7547763 TA
65 TA
* * * * *
7547765 ATTAATCATTGATAATTTAATAGTAAATCAATGAA-AATTTAGTAGTAAATTACA-GATAACTTA
1 GTAAATAATTGATAATTTAATAGTAAATCAAT-AATAATATAGTAGTAAA-TGCATGATAACTTA
7547828 ATA
64 ATA
7547831 GTAAAT
1 GTAAAT
7547837 CAGTTTTAGT
Statistics
Matches: 106, Mismatches: 28, Indels: 8
0.75 0.20 0.06
Matches are distributed among these distances:
65 3 0.03
66 95 0.90
67 8 0.08
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.35
Consensus pattern (66 bp):
GTAAATAATTGATAATTTAATAGTAAATCAATAATAATATAGTAGTAAATGCATGATAACTTAAT
A
Found at i:7547838 original size:66 final size:67
Alignment explanation
Indices: 7547633--7547927 Score: 201
Period size: 66 Copynumber: 4.4 Consensus size: 67
7547623 TAATTTGATT
* * * * *
7547633 GTAAATAATTGATAATTTAGTAGTAAATCAATAATAATATAATAGTAAA-TGCATAATAACTTAA
1 GTAAATCATTGATAATTTAATAGTAAATCAATAATAACATAGTAGTAAATTACATAATAACTTAA
7547697 TA
66 TA
** * ** * * * *
7547699 GTAAATCAATT-ATAACATAATTGTAAATGTATAATAGCATAGTAGTAAATGA-ATGATAACTTT
1 GTAAATC-ATTGATAATTTAATAGTAAATCAATAATAACATAGTAGTAAATTACATAATAACTTA
7547762 ATA
65 ATA
* * ** *
7547765 ATTAATCATTGATAATTTAATAGTAAATCAATGAA-AATTTAGTAGTAAATTACA-GATAACTTA
1 GTAAATCATTGATAATTTAATAGTAAATCAAT-AATAACATAGTAGTAAATTACATAATAACTTA
7547828 ATA
65 ATA
* * * * * * * *
7547831 GTAAATCAGTT-TTAGTTTAGTAGTAATTAAATTATAAGCTTAGCAGTAAA-T-CATAAATAACT
1 GTAAATCA-TTGATAATTTAATAGTAAATCAATAATAA-CATAGTAGTAAATTACAT-AATAACT
**
7547893 TAGCA
63 TAATA
* * *
7547898 ATAAATCAATGATAATTTAATAGTTAATCA
1 GTAAATCATTGATAATTTAATAGTAAATCA
7547928 CTAAAACTCA
Statistics
Matches: 171, Mismatches: 47, Indels: 21
0.72 0.20 0.09
Matches are distributed among these distances:
65 6 0.04
66 118 0.69
67 47 0.27
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (67 bp):
GTAAATCATTGATAATTTAATAGTAAATCAATAATAACATAGTAGTAAATTACATAATAACTTAA
TA
Found at i:7548115 original size:22 final size:22
Alignment explanation
Indices: 7548071--7548123 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
7548061 ATAACTTAGC
* * *
7548071 TATAAATCAGTGATAATTTAGT
1 TATAAATTAATGATAATTAAGT
7548093 TATAAATTAATGATAATTAAGT
1 TATAAATTAATGATAATTAAGT
*
7548115 TGTAAATTA
1 TATAAATTA
7548124 GTTAATTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.42
Consensus pattern (22 bp):
TATAAATTAATGATAATTAAGT
Found at i:7548162 original size:22 final size:22
Alignment explanation
Indices: 7548122--7548274 Score: 130
Period size: 22 Copynumber: 7.0 Consensus size: 22
7548112 AGTTGTAAAT
* * * *
7548122 TAGTTAATTATTAACAACTTCA
1 TAGTAAATTATCAATAACTTAA
* *
7548144 TAGTAAATCATCAATAACTTCA
1 TAGTAAATTATCAATAACTTAA
*
7548166 TAGTAAATTAGT-AATAACTTTA
1 TAGTAAATTA-TCAATAACTTAA
* **
7548188 TAATAAATTATCTGTAACTTAA
1 TAGTAAATTATCAATAACTTAA
*
7548210 TAGTAAATTATCAATAATTTAA
1 TAGTAAATTATCAATAACTTAA
* ** *
7548232 TAGTAAATTGTTTATAACTTAG
1 TAGTAAATTATCAATAACTTAA
*
7548254 TAGTAAATCT-TCTATAACTTA
1 TAGTAAAT-TATCAATAACTTA
7548275 GTGATAAATT
Statistics
Matches: 108, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
21 1 0.01
22 105 0.97
23 2 0.02
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (22 bp):
TAGTAAATTATCAATAACTTAA
Found at i:7548249 original size:66 final size:66
Alignment explanation
Indices: 7548137--7548314 Score: 177
Period size: 66 Copynumber: 2.7 Consensus size: 66
7548127 AATTATTAAC
* * * *
7548137 AACTTCATAGTAAATCATCAATAACTTCATAGTAAATTAGTAATAACTTTA-TAATAAAT-TATC
1 AACTTAATAGTAAATTATCAATAATTTAATAGTAAATTAGTAATAAC-TTAGTAATAAATCT-TC
*
7548200 TGT
64 TAT
* *
7548203 AACTTAATAGTAAATTATCAATAATTTAATAGTAAATT-GTTTATAACTTAGTAGTAAATCTTCT
1 AACTTAATAGTAAATTATCAATAATTTAATAGTAAATTAG-TAATAACTTAGTAATAAATCTTCT
7548267 AT
65 AT
* * * *
7548269 AACTTAGT-GATAAATTGAT-GATAATTTAGTAGTAAATTAGTGATAA
1 AACTTAATAG-TAAATT-ATCAATAATTTAATAGTAAATTAGTAATAA
7548315 AATAGTCATA
Statistics
Matches: 95, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
65 5 0.05
66 86 0.91
67 4 0.04
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.39
Consensus pattern (66 bp):
AACTTAATAGTAAATTATCAATAATTTAATAGTAAATTAGTAATAACTTAGTAATAAATCTTCTA
T
Found at i:7548292 original size:22 final size:22
Alignment explanation
Indices: 7548267--7548314 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
7548257 TAAATCTTCT
7548267 ATAACTTAGT-GATAAATT-GATG
1 ATAACTTAGTAG-TAAATTAG-TG
*
7548289 ATAATTTAGTAGTAAATTAGTG
1 ATAACTTAGTAGTAAATTAGTG
7548311 ATAA
1 ATAA
7548315 AATAGTCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.44, C:0.02, G:0.17, T:0.38
Consensus pattern (22 bp):
ATAACTTAGTAGTAAATTAGTG
Found at i:7548800 original size:22 final size:22
Alignment explanation
Indices: 7548775--7548924 Score: 115
Period size: 22 Copynumber: 6.8 Consensus size: 22
7548765 AGTAGTAAAT
* *
7548775 TAGTTAATCATTGATAATTTTA
1 TAGTAAATCATTGATAACTTTA
*
7548797 TAGTAAATTATTGATAACTTTA
1 TAGTAAATCATTGATAACTTTA
* * *
7548819 TAGAAAATTATTTATAACTTTA
1 TAGTAAATCATTGATAACTTTA
* * **
7548841 TAATAAATTATCAATAA-TTTA
1 TAGTAAATCATTGATAACTTTA
* ** *
7548862 GTAGTAAATCATTCATAAAGTAA
1 -TAGTAAATCATTGATAACTTTA
*
7548885 TAGTAAATCATTAATAA-TTTAA
1 TAGTAAATCATTGATAACTTT-A
* *
7548907 TAATAAATCACTGATAAC
1 TAGTAAATCATTGATAAC
7548925 ATAGTAATAA
Statistics
Matches: 103, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
21 5 0.05
22 96 0.93
23 2 0.02
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.41
Consensus pattern (22 bp):
TAGTAAATCATTGATAACTTTA
Found at i:7548868 original size:66 final size:66
Alignment explanation
Indices: 7548788--7548914 Score: 150
Period size: 66 Copynumber: 1.9 Consensus size: 66
7548778 TTAATCATTG
* * ** * * *
7548788 ATAATTTTATAGTAAATTATTGATAACTTTATAGAAAATTATTTATAACTTT-ATAATAAATTAT
1 ATAATTTTATAGTAAATCATTCATAAAGTAATAGAAAATCATTAATAA-TTTAATAATAAATTAT
7548852 CA
65 CA
*
7548854 ATAA-TTTAGTAGTAAATCATTCATAAAGTAATAGTAAATCATTAATAATTTAATAATAAAT
1 ATAATTTTA-TAGTAAATCATTCATAAAGTAATAGAAAATCATTAATAATTTAATAATAAAT
7548915 CACTGATAAC
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
65 7 0.14
66 44 0.86
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.42
Consensus pattern (66 bp):
ATAATTTTATAGTAAATCATTCATAAAGTAATAGAAAATCATTAATAATTTAATAATAAATTATC
A
Found at i:7548936 original size:44 final size:44
Alignment explanation
Indices: 7548840--7548938 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 44
7548830 TTATAACTTT
* * * *
7548840 ATAATAAATTATCAATAATTTAGTAGTAAATCATTCATAAAGTA
1 ATAATAAATCATCAATAATTTAATAATAAATCACTCATAAAGTA
* * *
7548884 ATAGTAAATCATTAATAATTTAATAATAAATCACTGATAACA-TA
1 ATAATAAATCATCAATAATTTAATAATAAATCACTCATAA-AGTA
*
7548928 GTAATAAATCA
1 ATAATAAATCA
7548939 ATGATAGCTT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 44 0.98
45 1 0.02
ACGTcount: A:0.52, C:0.08, G:0.06, T:0.34
Consensus pattern (44 bp):
ATAATAAATCATCAATAATTTAATAATAAATCACTCATAAAGTA
Found at i:7549217 original size:35 final size:35
Alignment explanation
Indices: 7549171--7549240 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
7549161 GGTAGTAAAG
7549171 TATGGATAACTTCATAATAAATTATTCATATTTTA
1 TATGGATAACTTCATAATAAATTATTCATATTTTA
7549206 TATGGATAACTTCATAATAAATTATTCATATTTTA
1 TATGGATAACTTCATAATAAATTATTCATATTTTA
7549241 ATAATAGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.46
Consensus pattern (35 bp):
TATGGATAACTTCATAATAAATTATTCATATTTTA
Found at i:7551462 original size:22 final size:22
Alignment explanation
Indices: 7551412--7551468 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
7551402 TATCATTTTC
* *
7551412 TTATTTTTTATGATTTTTTTATTA
1 TTATTTTTTA--AATTTTTTATCA
*
7551436 CTATTTTTTAAATTTTTTATCA
1 TTATTTTTTAAATTTTTTATCA
*
7551458 TTATTCTTTAA
1 TTATTTTTTAA
7551469 TGTATTTCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 19 0.68
24 9 0.32
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (22 bp):
TTATTTTTTAAATTTTTTATCA
Found at i:7551597 original size:19 final size:21
Alignment explanation
Indices: 7551573--7551617 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
7551563 ACATAAATAC
7551573 TAATAATAAA-AAT-TTAAAA
1 TAATAATAAATAATATTAAAA
7551592 TAATAA-AAATAATATTAAAA
1 TAATAATAAATAATATTAAAA
7551612 -AATAAT
1 TAATAAT
7551618 TCAAAAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 3 0.13
19 14 0.61
20 6 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
TAATAATAAATAATATTAAAA
Found at i:7552945 original size:99 final size:98
Alignment explanation
Indices: 7552842--7553050 Score: 265
Period size: 99 Copynumber: 2.1 Consensus size: 98
7552832 TGACTTAAAA
* * *
7552842 AAAATTTCATCTGAAAAAAGCTCCTCTAAGCAGAAGCTCAATAACTCTAGAAATCTCATATTAGA
1 AAAATCTCATCTGAAAAAAGCTCCTCTAAGCAGAAGCTCAATAACTCTAAAAATCTCAT-TTAAA
7552907 AAAAGCTCATCTAAGCAAAGGCTTAACAACTTTG
65 AAAAGCTCATCTAAGCAAAGGCTTAACAACTTTG
* * * * * *
7552941 AAAATCTCATCTTAGAAAAGCTCCTCTATGTAGAGGCTCAATAACTTTAAAAATCTCATTTAAAA
1 AAAATCTCATCTGAAAAAAGCTCCTCTAAGCAGAAGCTCAATAACTCTAAAAATCTCATTTAAAA
* * * * * *
7553006 AAAGCTCCTCTAAGCAGAGACTCAATAACTTTA
66 AAAGCTCATCTAAGCAAAGGCTTAACAACTTTG
*
7553039 AAAATCTAATCT
1 AAAATCTCATCT
7553051 TGGAAAGGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
98 43 0.46
99 51 0.54
ACGTcount: A:0.42, C:0.20, G:0.11, T:0.27
Consensus pattern (98 bp):
AAAATCTCATCTGAAAAAAGCTCCTCTAAGCAGAAGCTCAATAACTCTAAAAATCTCATTTAAAA
AAAGCTCATCTAAGCAAAGGCTTAACAACTTTG
Found at i:7552987 original size:49 final size:49
Alignment explanation
Indices: 7552841--7553056 Score: 245
Period size: 49 Copynumber: 4.4 Consensus size: 49
7552831 ATGACTTAAA
* * * * *
7552841 AAAAATTTCATCTGAAAAAAGCTCCTCTAAGCAGAAGCTCAATAACTCT
1 AAAAATCTCATCTTAGAAAAGCTCCTCTAAGCAGAGGCTCAATAACTTT
* * * * * *
7552890 AGAAATCTCATATTAGAAAAAGCTCATCTAAGCAAAGGCTTAACAACTTT
1 AAAAATCTCATCTTAG-AAAAGCTCCTCTAAGCAGAGGCTCAATAACTTT
* * *
7552940 GAAAATCTCATCTTAGAAAAGCTCCTCTATGTAGAGGCTCAATAACTTT
1 AAAAATCTCATCTTAGAAAAGCTCCTCTAAGCAGAGGCTCAATAACTTT
* *
7552989 AAAAATCTCAT-TTAAAAAAAGCTCCTCTAAGCAGAGACTCAATAACTTT
1 AAAAATCTCATCTT-AGAAAAGCTCCTCTAAGCAGAGGCTCAATAACTTT
* *
7553038 AAAAATCTAATCTTGGAAA
1 AAAAATCTCATCTTAGAAA
7553057 GGCTATTCTA
Statistics
Matches: 136, Mismatches: 28, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
48 2 0.01
49 92 0.68
50 42 0.31
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (49 bp):
AAAAATCTCATCTTAGAAAAGCTCCTCTAAGCAGAGGCTCAATAACTTT
Found at i:7553167 original size:126 final size:125
Alignment explanation
Indices: 7552960--7553201 Score: 367
Period size: 126 Copynumber: 1.9 Consensus size: 125
7552950 TCTTAGAAAA
* * * * *
7552960 GCTCCTCTATGTAGAGGCTCAATAACTTTAAAAATCTCATTTAAAAAAAGCTCCTCTAAGCAGAG
1 GCTCCTCTAAGCAGAAGATCAATAACTTTAAAAATCTCATTTAAAAAAAACTCCTCTAAGCAGAG
* *
7553025 ACTCAATAACTTTAAAAATCTAATCTTGGAAAGGCTATTCTAAATAGAGGCCCAACAAAG
66 ACTCAACAACTTTAAAAATCTAATCTTGGAAAGGCTACTCTAAATAGAGGCCCAACAAAG
*
7553085 GCTCCTCTAAGCAGAAGATCAATAACTTTAAAAATCTTATATTAAAAAAAACTCCTCTAAGCAGA
1 GCTCCTCTAAGCAGAAGATCAATAACTTTAAAAATCTCAT-TTAAAAAAAACTCCTCTAAGCAGA
* * * *
7553150 GGCTTAACAACTTTAAAAATCTAATCTTGGAAAGGCTCCTCTAAGTAGAGGC
65 GACTCAACAACTTTAAAAATCTAATCTTGGAAAGGCTACTCTAAATAGAGGC
7553202 TCAATAACTT
Statistics
Matches: 104, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
125 35 0.34
126 69 0.66
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (125 bp):
GCTCCTCTAAGCAGAAGATCAATAACTTTAAAAATCTCATTTAAAAAAAACTCCTCTAAGCAGAG
ACTCAACAACTTTAAAAATCTAATCTTGGAAAGGCTACTCTAAATAGAGGCCCAACAAAG
Found at i:7553200 original size:49 final size:49
Alignment explanation
Indices: 7553085--7553281 Score: 223
Period size: 49 Copynumber: 4.0 Consensus size: 49
7553075 CCCAACAAAG
* * * * * *
7553085 GCTCCTCTAAGCAGAAGATCAATAACTTTAAAAATCTTATATTAAAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTAATCTT-GAAAAA
* * * *
7553135 ACTCCTCTAAGCAGAGGCTTAACAACTTTAAAAATCTAATCTTGGAAAG
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTAATCTTGAAAAA
* * * *
7553184 GCTCCTCTAAGTAGAGGCTCAATAACTTTAAAACTTTAATCTTGAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTAATCTTGAAAAA
* * *
7553233 GCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTCTCATCTTGAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAA-TCTAATCTTGAAAA
7553282 TGAAATGTCA
Statistics
Matches: 121, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
49 73 0.60
50 48 0.40
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.28
Consensus pattern (49 bp):
GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTAATCTTGAAAAA
Found at i:7553206 original size:99 final size:99
Alignment explanation
Indices: 7553081--7553277 Score: 263
Period size: 99 Copynumber: 2.0 Consensus size: 99
7553071 GAGGCCCAAC
*
7553081 AAAGGCTCCTCTAAGCAGAAGATCAATAACTTTAAAAATCTTATAT-TAAAAAAAACTCCTCTAA
1 AAAGGCTCCTCTAAGCAGAAGATCAATAACTTTAAAAAT-TTA-ATCTAAAAAAAACTCATCTAA
*
7553145 GCAGAGGCTTAACAACTTTAAAAA-TCTAATCTTGG
64 GCAGAGGCTCAACAACTTTAAAAATTCTAATCTTGG
* * * * ** * *
7553180 AAAGGCTCCTCTAAGTAGAGGCTCAATAACTTTAAAACTTTAATCTTGAAAAAGCTCATCTCAGC
1 AAAGGCTCCTCTAAGCAGAAGATCAATAACTTTAAAAATTTAATCTAAAAAAAACTCATCTAAGC
*
7553245 AGAGGCTCAACAACTTTAAAAATTCTCATCTTG
66 AGAGGCTCAACAACTTTAAAAATTCTAATCTTG
7553278 AAAATGAAAT
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
97 2 0.02
98 39 0.46
99 44 0.52
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (99 bp):
AAAGGCTCCTCTAAGCAGAAGATCAATAACTTTAAAAATTTAATCTAAAAAAAACTCATCTAAGC
AGAGGCTCAACAACTTTAAAAATTCTAATCTTGG
Found at i:7553262 original size:224 final size:225
Alignment explanation
Indices: 7552861--7553277 Score: 613
Period size: 224 Copynumber: 1.9 Consensus size: 225
7552851 TCTGAAAAAA
* * * *
7552861 GCTCCTCTAAGCAGAAGCTCAATAACTCTAGAAATCTCATATTAGAAAAAGCTCATCTAAGCAAA
1 GCTCCTCTAAGCAGAAGATCAATAACTCTAAAAATCTCATATTAAAAAAAACTCATCTAAGCAAA
* * *
7552926 GGCTTAACAACTTTGAAAATCTCATCTTAGAAAAGCTCCTCTATGTAGAGGCTCAATAACTTTAA
66 GGCTTAACAACTTTAAAAATCTAATCTTAGAAAAGCTCCTCTAAGTAGAGGCTCAATAACTTTAA
* * *
7552991 AAATCTCATTTAAAAAAAGCTCCTCTAAGCAGAGACTCAATAACTTTAAAAA-TCTAATCTTGGA
131 AAATCTAATTTAAAAAAAGCTCATCTAAGCAGAGACTCAACAACTTTAAAAATTCTAATCTTGGA
7553055 AAGGCTATTCTAAATAGAGGCCCAACAAAG
196 AAGGCTATTCTAAATAGAGGCCCAACAAAG
* * * *
7553085 GCTCCTCTAAGCAGAAGATCAATAACTTTAAAAATCTTATATTAAAAAAAACTCCTCTAAGCAGA
1 GCTCCTCTAAGCAGAAGATCAATAACTCTAAAAATCTCATATTAAAAAAAACTCATCTAAGCAAA
* *
7553150 GGCTTAACAACTTTAAAAATCTAATCTTGGAAAGGCTCCTCTAAGTAGAGGCTCAATAACTTTAA
66 GGCTTAACAACTTTAAAAATCTAATCTTAGAAAAGCTCCTCTAAGTAGAGGCTCAATAACTTTAA
* * * * * *
7553215 AACTTTAATCTT-GAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTCTCATCTTG
131 AAATCTAAT-TTAAAAAAAGCTCATCTAAGCAGAGACTCAACAACTTTAAAAATTCTAATCTTG
7553278 AAAATGAAAT
Statistics
Matches: 169, Mismatches: 22, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
224 158 0.93
225 11 0.07
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.27
Consensus pattern (225 bp):
GCTCCTCTAAGCAGAAGATCAATAACTCTAAAAATCTCATATTAAAAAAAACTCATCTAAGCAAA
GGCTTAACAACTTTAAAAATCTAATCTTAGAAAAGCTCCTCTAAGTAGAGGCTCAATAACTTTAA
AAATCTAATTTAAAAAAAGCTCATCTAAGCAGAGACTCAACAACTTTAAAAATTCTAATCTTGGA
AAGGCTATTCTAAATAGAGGCCCAACAAAG
Found at i:7563888 original size:15 final size:16
Alignment explanation
Indices: 7563870--7563905 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 16
7563860 TTTTTGGTGA
7563870 TTTTTTTGTTT-TTTG
1 TTTTTTTGTTTCTTTG
7563885 TTTTTTTGTTTGCTTTG
1 TTTTTTTGTTT-CTTTG
7563902 TTTT
1 TTTT
7563906 GTTTTCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 11 0.58
17 8 0.42
ACGTcount: A:0.00, C:0.03, G:0.14, T:0.83
Consensus pattern (16 bp):
TTTTTTTGTTTCTTTG
Found at i:7564383 original size:12 final size:11
Alignment explanation
Indices: 7564362--7564396 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
7564352 GTGTGTGAAA
7564362 TTTTTCTTTTT
1 TTTTTCTTTTT
*
7564373 GTTTTCTTTTT
1 TTTTTCTTTTT
7564384 TTTTTGCTTTTT
1 TTTTT-CTTTTT
7564396 T
1 T
7564397 CTTAATGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.86
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:7565738 original size:19 final size:21
Alignment explanation
Indices: 7565714--7565758 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
7565704 ACATAAATAC
7565714 TAATAATAAA-AAT-TTAAAA
1 TAATAATAAATAATATTAAAA
7565733 TAATAA-AAATAATATTAAAA
1 TAATAATAAATAATATTAAAA
7565753 -AATAAT
1 TAATAAT
7565759 TCAAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 3 0.13
19 14 0.61
20 6 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
TAATAATAAATAATATTAAAA
Found at i:7565764 original size:12 final size:13
Alignment explanation
Indices: 7565737--7565769 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7565727 TTAAAATAAT
*
7565737 AAAAATAATATTA
1 AAAAATAATATCA
7565750 AAAAATAAT-TCA
1 AAAAATAATATCA
7565762 AAAAATAA
1 AAAAATAA
7565770 AAAAATGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAAATAATATCA
Found at i:7565768 original size:22 final size:20
Alignment explanation
Indices: 7565729--7565775 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 20
7565719 ATAAAAATTT
7565729 AAAATAATAAAAATAATATTAA
1 AAAATAATAAAAATAATA--AA
*
7565751 AAAATAATTCAAAA-AATAAA
1 AAAATAA-TAAAAATAATAAA
7565771 AAAAT
1 AAAAT
7565776 GAATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 7 0.30
22 11 0.48
23 5 0.22
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (20 bp):
AAAATAATAAAAATAATAAA
Found at i:7566761 original size:16 final size:15
Alignment explanation
Indices: 7566736--7566767 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
7566726 AAAGAAGAAG
7566736 AGAAAAAAATAATAAA
1 AGAAAAAAATAA-AAA
7566752 AGAAAAAAATAAAAA
1 AGAAAAAAATAAAAA
7566767 A
1 A
7566768 TAATAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.09
Consensus pattern (15 bp):
AGAAAAAAATAAAAA
Found at i:7566786 original size:3 final size:3
Alignment explanation
Indices: 7566780--7566824 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
7566770 ATAGAAAACT
7566780 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7566825 TTTCAGACAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7568942 original size:2 final size:2
Alignment explanation
Indices: 7568935--7568984 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
7568925 TGCCAAAAAT
7568935 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7568977 GA GA GA GA
1 GA GA GA GA
7568985 ACTGTAAGAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7573301 original size:20 final size:20
Alignment explanation
Indices: 7573273--7573321 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
7573263 AAATTAAAGT
7573273 TAAACTAAGGATAAAATACA
1 TAAACTAAGGATAAAATACA
*
7573293 TAAATTAAGGATAAAATACA
1 TAAACTAAGGATAAAATACA
*
7573313 TCAACTAAG
1 TAAACTAAG
7573322 AAGTGATTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.22
Consensus pattern (20 bp):
TAAACTAAGGATAAAATACA
Found at i:7576659 original size:2 final size:2
Alignment explanation
Indices: 7576652--7576676 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7576642 AGATAAAAGT
7576652 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7576677 GTATGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7577035 original size:19 final size:17
Alignment explanation
Indices: 7577002--7577070 Score: 54
Period size: 17 Copynumber: 3.9 Consensus size: 17
7576992 GATATTTGTT
7577002 TATTTTTTTTTATTTTC
1 TATTTTTTTTTATTTTC
7577019 TATTTTTGTTTTGATTTT-
1 TATTTTT-TTTT-ATTTTC
* *
7577037 T-TGTTTTATTATTATT-
1 TATTTTTTTTTATT-TTC
7577053 TATTTATTTATTTATTTT
1 TATTT-TTT-TTTATTTT
7577071 ATTGAAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
15 3 0.07
16 6 0.14
17 13 0.31
18 10 0.24
19 10 0.24
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.78
Consensus pattern (17 bp):
TATTTTTTTTTATTTTC
Found at i:7577070 original size:27 final size:25
Alignment explanation
Indices: 7577000--7577073 Score: 71
Period size: 27 Copynumber: 2.9 Consensus size: 25
7576990 GTGATATTTG
*
7577000 TTTATTT-TTTTTTATTTT-CTATT
1 TTTATTTATTTTTTATTTTATTATT
* *
7577023 TTTGTTTTGATTTTTTGTTTTATTATT
1 TTT-ATTT-ATTTTTTATTTTATTATT
7577050 ATTTATTTATTTATTTATTTTATT
1 -TTTATTTATTT-TTTATTTTATT
7577074 GAAAAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
23 3 0.08
24 3 0.08
26 14 0.35
27 17 0.43
28 3 0.08
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.78
Consensus pattern (25 bp):
TTTATTTATTTTTTATTTTATTATT
Found at i:7577203 original size:24 final size:22
Alignment explanation
Indices: 7577172--7577229 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
7577162 TCTATGGTTT
7577172 ATTATGATTTTTTTGCATGATTTA
1 ATTATGATTTTTTTGCATGA--TA
* *
7577196 ATTATGATATTGTTGCATGATA
1 ATTATGATTTTTTTGCATGATA
*
7577218 TTTATGATTTTT
1 ATTATGATTTTT
7577230 CTATGATATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 11 0.38
24 18 0.62
ACGTcount: A:0.26, C:0.03, G:0.14, T:0.57
Consensus pattern (22 bp):
ATTATGATTTTTTTGCATGATA
Found at i:7578727 original size:23 final size:24
Alignment explanation
Indices: 7578697--7578741 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
7578687 TTTAATCATG
7578697 CAAAAATACTAAA-AAAATAAACA
1 CAAAAATACTAAATAAAATAAACA
7578720 CAAAAATACTAAATAAAATAAA
1 CAAAAATACTAAATAAAATAAA
7578742 TAAATAAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.73, C:0.11, G:0.00, T:0.16
Consensus pattern (24 bp):
CAAAAATACTAAATAAAATAAACA
Found at i:7579228 original size:20 final size:20
Alignment explanation
Indices: 7579205--7579247 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
7579195 TGTTAAAAAA
7579205 TTCACCAAAAACTAAAAATT
1 TTCACCAAAAACTAAAAATT
* * * *
7579225 TTCATCAGAATCTAAGAATT
1 TTCACCAAAAACTAAAAATT
7579245 TTC
1 TTC
7579248 CAAAATTTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.33
Consensus pattern (20 bp):
TTCACCAAAAACTAAAAATT
Found at i:7579590 original size:15 final size:16
Alignment explanation
Indices: 7579570--7579606 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
7579560 TTTACTACCT
7579570 AATAAAA-CAAAAATA
1 AATAAAACCAAAAATA
*
7579585 AATAAAACCCAAAATA
1 AATAAAACCAAAAATA
7579601 AATAAA
1 AATAAA
7579607 TAATAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.14
Consensus pattern (16 bp):
AATAAAACCAAAAATA
Found at i:7579781 original size:74 final size:74
Alignment explanation
Indices: 7579653--7579794 Score: 196
Period size: 74 Copynumber: 1.9 Consensus size: 74
7579643 AAAAAGTTGG
* * * * *
7579653 GCTTGAAAAATTGGACCCTATGGAAACAAGCCCGATGGGCTTAGACCCGAACCCTGTTGAACTAG
1 GCTTGAAAAATTGGACCCCATAGAAACAAGCCCAATGGGCTTAGACCAGAACCCTATTGAACTAG
7579718 GCCTAATGA
66 GCCTAATGA
* * *
7579727 GCTTGACAAATTGGACCCCATAGAACCAAGCCCAATGGGCTTAGGCTCAG-ACCCTATTGAACTA
1 GCTTGAAAAATTGGACCCCATAGAAACAAGCCCAATGGGCTTAGAC-CAGAACCCTATTGAACTA
7579791 GGCC
65 GGCC
7579795 CAATAGGCTT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
74 57 0.97
75 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (74 bp):
GCTTGAAAAATTGGACCCCATAGAAACAAGCCCAATGGGCTTAGACCAGAACCCTATTGAACTAG
GCCTAATGA
Found at i:7580060 original size:42 final size:42
Alignment explanation
Indices: 7580005--7580368 Score: 240
Period size: 42 Copynumber: 8.8 Consensus size: 42
7579995 GCAGAGGGTT
*
7580005 ACAACTTTGGAAAATAAATAAAGCTCCTCTAAACAGAGGTCA
1 ACAACTTTAGAAAATAAATAAAGCTCCTCTAAACAGAGGTCA
* * * * *
7580047 ACGACTTTAGAAAATAAATAATGCTTCTCTAATCAGAGGCTAA
1 ACAACTTTAGAAAATAAATAAAGCTCCTCTAAACAGAGG-TCA
*
7580090 ACAACTTT-G--AA-AAATAAAGGCT-CT-TAAAAGTAGAGGCTCA
1 ACAACTTTAGAAAATAAATAAA-GCTCCTCT-AAA-CAGAGG-TCA
* * * * **
7580130 AAAACTTTTGAAAA-ATAA-AAAGCTCATTTAAACAGAAGCACA
1 ACAACTTTAGAAAATA-AATAAAGCTCCTCTAAACAG-AGGTCA
* *
7580172 ACAACTTTAAAAAAAAAATAAAGCTCCTCT-AACAGAGG-CATA
1 ACAACTTTAGAAAATAAATAAAGCTCCTCTAAACAGAGGTC--A
* *
7580214 ACAACTTTAGAAAATAAAT---GCTCATCTAAACAGAGGCACA
1 ACAACTTTAGAAAATAAATAAAGCTCCTCTAAACAGAGG-TCA
* * * *
7580254 ACAACTTTAGCAAATAAATAAAGTTCCTCTAAATAGAAGCTCA
1 ACAACTTTAGAAAATAAATAAAGCTCCTCTAAACAG-AGGTCA
* * * *
7580297 ACAACTTT-GAAAA-ATA-AAAGCTTCTCTAAATAGA-GACATA
1 ACAACTTTAGAAAATAAATAAAGCTCCTCTAAACAGAGGTC--A
* * *
7580337 ACAACTTTAAAAAATAAATAATGCTCATCTAA
1 ACAACTTTAGAAAATAAATAAAGCTCCTCTAA
7580369 TCAAAGACTC
Statistics
Matches: 253, Mismatches: 42, Indels: 53
0.73 0.12 0.15
Matches are distributed among these distances:
38 2 0.01
39 18 0.07
40 72 0.28
41 9 0.04
42 85 0.34
43 62 0.25
44 5 0.02
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.23
Consensus pattern (42 bp):
ACAACTTTAGAAAATAAATAAAGCTCCTCTAAACAGAGGTCA
Found at i:7580162 original size:124 final size:126
Alignment explanation
Indices: 7580010--7580354 Score: 325
Period size: 125 Copynumber: 2.8 Consensus size: 126
7580000 GGGTTACAAC
* * ** * * * * *
7580010 TTTGGAAAATAAATAAAGCTCCTCTAAACAG-AGGTCAACGACTTTAGAAAATAAATAATGCTTC
1 TTTGAAAAATAAATAAAGCTCATCTAAACAGAAGCACAACAACTTTAAAAAAAAAATAAAGCTCC
7580074 TCTAATCAGAGGC-TAAACAACTTT-GAAAAATAAAGGCTCTTAAAAGTAGAGGCTCAAAAACT
66 TCTAA-CAGAGGCAT-AACAACTTTAG-AAAATAAAGGCTCTTAAAAGTAGAGGCTCAAAAACT
*
7580136 TTTGAAAAAT-AA-AAAGCTCATTTAAACAGAAGCACAACAACTTTAAAAAAAAAATAAAGCTCC
1 TTTGAAAAATAAATAAAGCTCATCTAAACAGAAGCACAACAACTTTAAAAAAAAAATAAAGCTCC
* * * *
7580199 TCTAACAGAGGCATAACAACTTTAGAAAATAAATGCTCATCT-AAA-CAGAGGCACAACAACT
66 TCTAACAGAGGCATAACAACTTTAGAAAATAAAGGCTC-T-TAAAAGTAGAGGCTCAAAAACT
* * * * * * * * *
7580260 TTAG-CAAATAAATAAAGTTCCTCTAAATAGAAGCTCAACAACTTT--GAAAAATA-AAAGCTTC
1 TTTGAAAAATAAATAAAGCTCATCTAAACAGAAGCACAACAACTTTAAAAAAAAAATAAAGCTCC
* * *
7580321 TCTAAATAGAGACATAACAACTTTAAAAAATAAA
66 TCT-AACAGAGGCATAACAACTTTAGAAAATAAA
7580355 TAATGCTCAT
Statistics
Matches: 184, Mismatches: 27, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
122 10 0.05
123 37 0.20
124 61 0.33
125 66 0.36
126 10 0.05
ACGTcount: A:0.49, C:0.17, G:0.12, T:0.23
Consensus pattern (126 bp):
TTTGAAAAATAAATAAAGCTCATCTAAACAGAAGCACAACAACTTTAAAAAAAAAATAAAGCTCC
TCTAACAGAGGCATAACAACTTTAGAAAATAAAGGCTCTTAAAAGTAGAGGCTCAAAAACT
Found at i:7580185 original size:82 final size:79
Alignment explanation
Indices: 7580005--7580354 Score: 229
Period size: 82 Copynumber: 4.2 Consensus size: 79
7579995 GCAGAGGGTT
* * *
7580005 ACAACTTTGGAAAATAAATAAAGCTCCTCTAAACAGAGG-TCAACGACTTTAG-AAAATAAATAA
1 ACAACTTT--AAAA-AAATAAAGCT-CT-TAAATAGAGGCTCAACAACTTTTGAAAAAT-AA-AA
* *
7580068 TGCTTC-TCTAATCAGAGGCTA-A
59 -GC-TCATCTAAACAGAAGC-ACA
* *
7580090 ACAACTTT-GAAAAATAAAGGCTCTTAAAAGTAGAGGCTCAAAAACTTTTGAAAAATAAAAAGCT
1 ACAACTTTAAAAAAATAAA-GCTCTT-AAA-TAGAGGCTCAACAACTTTTGAAAAAT-AAAAGCT
*
7580154 CATTTAAACAGAAGCACA
62 CATCTAAACAGAAGCACA
* * *
7580172 ACAACTTTAAAAAAAAAATAAAGCTCCTCT-AACAGAGGCAT-AACAACTTTAG-AAAATAAATG
1 ACAACTTT---AAAAAAATAAAGCT-CT-TAAATAGAGGC-TCAACAACTTTTGAAAAATAAAAG
*
7580234 CTCATCTAAACAGAGGCACA
60 CTCATCTAAACAGAAGCACA
* *
7580254 ACAACTTTAGCAAATAAATAAAGTTCCTCTAAATAGAAGCTCAACAAC-TTTGAAAAATAAAAGC
1 ACAACTTTA--AAA-AAATAAAGCT-CT-TAAATAGAGGCTCAACAACTTTTGAAAAATAAAAGC
* *
7580318 TTC-TCTAAATAG-AGACATA
61 -TCATCTAAACAGAAG-CACA
7580337 ACAACTTT-AAAAAATAAA
1 ACAACTTTAAAAAAATAAA
7580355 TAATGCTCAT
Statistics
Matches: 220, Mismatches: 23, Indels: 50
0.75 0.08 0.17
Matches are distributed among these distances:
79 8 0.04
80 4 0.02
81 18 0.08
82 80 0.36
83 59 0.27
84 25 0.11
85 14 0.06
86 11 0.05
87 1 0.00
ACGTcount: A:0.49, C:0.17, G:0.11, T:0.23
Consensus pattern (79 bp):
ACAACTTTAAAAAAATAAAGCTCTTAAATAGAGGCTCAACAACTTTTGAAAAATAAAAGCTCATC
TAAACAGAAGCACA
Found at i:7580249 original size:40 final size:39
Alignment explanation
Indices: 7580005--7580438 Score: 209
Period size: 40 Copynumber: 10.5 Consensus size: 39
7579995 GCAGAGGGTT
*
7580005 ACAACTTTGGAAAATAAATAAAGCTCCTCTAAACAGAGG-TCA
1 ACAACTTTAGAAAATAAAT---GCT-CTCTAAACAGAGGCTCA
* * *
7580047 ACGACTTTAGAAAATAAATAATGCTTCTCTAATCAGAGGCTAA
1 ACAACTTTAGAAAAT--A-AATGC-TCTCTAAACAGAGGCTCA
* *
7580090 ACAACTTT-GAAAAATAAAGGCTCT-TAAAAGTAGAGGCTCA
1 ACAACTTTAG-AAAATAAATGCTCTCT-AAA-CAGAGGCTCA
* * * * * *
7580130 AAAACTTTTGAAAAATAAAAAGCTCATTTAAACAGAAGCACA
1 ACAACTTTAG-AAAAT-AAATGCTC-TCTAAACAGAGGCTCA
* *
7580172 ACAACTTTAAAAAAAAAATAAAGCTCCTCT-AACAGAGGCAT-A
1 ACAACTTTAGAAAATAAAT---GCT-CTCTAAACAGAGGC-TCA
*
7580214 ACAACTTTAGAAAATAAATGCTCATCTAAACAGAGGCACA
1 ACAACTTTAGAAAATAAATGCTC-TCTAAACAGAGGCTCA
* * * *
7580254 ACAACTTTAGCAAATAAATAAAGTTCCTCTAAATAGAAGCTCA
1 ACAACTTTAGAAAATAAAT---GCT-CTCTAAACAGAGGCTCA
* * *
7580297 ACAACTTT-GAAAAATAAAAGCTTCTCTAAATAGAGACAT-A
1 ACAACTTTAG-AAAATAAATGC-TCTCTAAACAGAGGC-TCA
* * * *
7580337 ACAACTTTAAAAAATAAATAATGCTCATCTAATCAAAGACTCA
1 ACAACTTTAGAAAAT--A-AATGCTC-TCTAAACAGAGGCTCA
* * * *
7580380 ACAACATT-GAAAATTAAAGGCTTTTCTAAGCAGAGGCTCA
1 ACAACTTTAGAAAA-TAAATGC-TCTCTAAACAGAGGCTCA
** *
7580420 ATGACTTTTGAAAAATAAA
1 ACAACTTTAG-AAAATAAA
7580439 AGGCTCATCA
Statistics
Matches: 305, Mismatches: 50, Indels: 75
0.71 0.12 0.17
Matches are distributed among these distances:
38 2 0.01
39 11 0.04
40 99 0.32
41 21 0.07
42 88 0.29
43 77 0.25
44 4 0.01
45 3 0.01
ACGTcount: A:0.48, C:0.17, G:0.12, T:0.24
Consensus pattern (39 bp):
ACAACTTTAGAAAATAAATGCTCTCTAAACAGAGGCTCA
Found at i:7580344 original size:83 final size:83
Alignment explanation
Indices: 7580005--7580414 Score: 305
Period size: 83 Copynumber: 4.9 Consensus size: 83
7579995 GCAGAGGGTT
* * * *
7580005 ACAACTTTGGAAAATAAATAAAGCTCCTCTAAACAG-AGGTCAACGACTTT-AGAAAATAAATAA
1 ACAACTTTAGAAAATAAATAAAGCTCCTCTAAATAGAAGCTCAACAACTTTGA-AAAAT-AA-AA
* *
7580068 TGCTTCTCTAATCAGAGGCTA-A
63 -GCTTCTCTAAACAGAGAC-ACA
* *
7580090 ACAACTTT-G--AA-AAATAAAGGCT-CT-TAAAAGTAGAGGCTCAAAAACTTTTGAAAAATAAA
1 ACAACTTTAGAAAATAAATAAA-GCTCCTCT-AAA-TAGAAGCTCAACAAC-TTTGAAAAAT-AA
*
7580149 AAGC-TCATTTAAACAGA-AGCACA
61 AAGCTTC-TCTAAACAGAGA-CACA
* * * * *
7580172 ACAACTTTAAAAAAAAAATAAAGCTCCTCT-AACAGAGGCAT-AACAACTTT-AGAAAATAAATG
1 ACAACTTTAGAAAATAAATAAAGCTCCTCTAAATAGAAGC-TCAACAACTTTGA-AAAATAAAAG
*
7580234 C-TCATCTAAACAGAGGCACA
64 CTTC-TCTAAACAGAGACACA
* *
7580254 ACAACTTTAGCAAATAAATAAAGTTCCTCTAAATAGAAGCTCAACAACTTTGAAAAATAAAAGCT
1 ACAACTTTAGAAAATAAATAAAGCTCCTCTAAATAGAAGCTCAACAACTTTGAAAAATAAAAGCT
* *
7580319 TCTCTAAATAGAGACATA
66 TCTCTAAACAGAGACACA
* * * * * *
7580337 ACAACTTTAAAAAATAAATAATGCTCATCT-AATCA-AAGACTCAACAACATTGAAAATTAAAGG
1 ACAACTTTAGAAAATAAATAAAGCTCCTCTAAAT-AGAAG-CTCAACAACTTTGAAAAATAAAAG
* *
7580400 CTTTTCTAAGCAGAG
64 CTTCTCTAAACAGAG
7580415 GCTCAATGAC
Statistics
Matches: 266, Mismatches: 35, Indels: 50
0.76 0.10 0.14
Matches are distributed among these distances:
80 1 0.00
81 15 0.06
82 82 0.31
83 115 0.43
84 26 0.10
85 17 0.06
86 9 0.03
87 1 0.00
ACGTcount: A:0.48, C:0.17, G:0.12, T:0.23
Consensus pattern (83 bp):
ACAACTTTAGAAAATAAATAAAGCTCCTCTAAATAGAAGCTCAACAACTTTGAAAAATAAAAGCT
TCTCTAAACAGAGACACA
Found at i:7580927 original size:23 final size:23
Alignment explanation
Indices: 7580897--7580951 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
7580887 AGCTATTCTT
7580897 AAAGATTCTCATTTGAAAAACTC
1 AAAGATTCTCATTTGAAAAACTC
7580920 AAAGATTCTCATTTGAAAAACTC
1 AAAGATTCTCATTTGAAAAACTC
*
7580943 GAAGATTCT
1 AAAGATTCT
7580952 TGAAGATTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (23 bp):
AAAGATTCTCATTTGAAAAACTC
Found at i:7581011 original size:21 final size:21
Alignment explanation
Indices: 7580979--7581052 Score: 76
Period size: 21 Copynumber: 3.3 Consensus size: 21
7580969 AAAAAAACTT
7580979 AAAGATTCTCATTTAAGACTC
1 AAAGATTCTCATTTAAGACTC
* * *
7581000 AAAGGTTTTCATTTGAAAACGTC
1 AAAGATTCTCATTT-AAGAC-TC
*
7581023 TTAAAGATTCTCATTTAAGGCTC
1 --AAAGATTCTCATTTAAGACTC
7581046 AAAGATT
1 AAAGATT
7581053 ATTACTTGAG
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
21 19 0.45
22 4 0.10
23 4 0.10
24 3 0.07
25 12 0.29
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (21 bp):
AAAGATTCTCATTTAAGACTC
Found at i:7584466 original size:13 final size:13
Alignment explanation
Indices: 7584434--7584472 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7584424 ATTGTATTAT
7584434 TATATTATTACTAG
1 TATATTATTA-TAG
*
7584448 TGTATTATTATAG
1 TATATTATTATAG
*
7584461 TATATTAGTATA
1 TATATTATTATA
7584473 ACACATTACC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (13 bp):
TATATTATTATAG
Found at i:7584961 original size:20 final size:20
Alignment explanation
Indices: 7584925--7584962 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7584915 TTCTAAAATC
*
7584925 GATTTGAGATTTTTGGGTGT
1 GATTTGAGATTTCTGGGTGT
7584945 GATTTGAAGA-TTCTGGGT
1 GATTTG-AGATTTCTGGGT
7584963 TTAATTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.18, C:0.03, G:0.34, T:0.45
Consensus pattern (20 bp):
GATTTGAGATTTCTGGGTGT
Found at i:7585636 original size:37 final size:36
Alignment explanation
Indices: 7585548--7585620 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 36
7585538 AAAGACCAAA
*
7585548 AATAAATAAATATTTTCAAATAAGTTTTCAAAACAAT
1 AATAAA-AAATCTTTTCAAATAAGTTTTCAAAACAAT
7585585 AATAAAAAATCTTTTCAAATAAAGTTTT-AAAA-AAT
1 AATAAAAAATCTTTTCAAAT-AAGTTTTCAAAACAAT
7585620 A
1 A
7585621 TTTATAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
35 4 0.12
36 17 0.50
37 13 0.38
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (36 bp):
AATAAAAAATCTTTTCAAATAAGTTTTCAAAACAAT
Found at i:7586865 original size:15 final size:16
Alignment explanation
Indices: 7586838--7586867 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7586828 TTTTTTTATT
7586838 GTGTATGCATGCATTC
1 GTGTATGCATGCATTC
7586854 GTGTAT-CATGCATT
1 GTGTATGCATGCATT
7586868 GCATTCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (16 bp):
GTGTATGCATGCATTC
Found at i:7587421 original size:34 final size:34
Alignment explanation
Indices: 7587378--7587450 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
7587368 GCCATAAGCA
7587378 TGATTAAGGAAAGATTACGAGCTATAGAAGGCAT
1 TGATTAAGGAAAGATTACGAGCTATAGAAGGCAT
* * * *
7587412 TGATTAAGGAAAGATTATGGGCTGTAGAGGGCAT
1 TGATTAAGGAAAGATTACGAGCTATAGAAGGCAT
7587446 TGATT
1 TGATT
7587451 TCTATGGATC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.36, C:0.07, G:0.30, T:0.27
Consensus pattern (34 bp):
TGATTAAGGAAAGATTACGAGCTATAGAAGGCAT
Found at i:7589662 original size:7 final size:7
Alignment explanation
Indices: 7589650--7589737 Score: 56
Period size: 8 Copynumber: 11.9 Consensus size: 7
7589640 GGTGTACTAA
7589650 AAAAAAG
1 AAAAAAG
7589657 AAAAAA-
1 AAAAAAG
7589663 AAAAGCAA-
1 AAAA--AAG
*
7589671 AAAGAAG
1 AAAAAAG
7589678 AAGAAAATG
1 AA-AAAA-G
7589687 AAAAAATG
1 AAAAAA-G
*
7589695 AAAAATG
1 AAAAAAG
7589702 AAAAAATG
1 AAAAAA-G
7589710 AAAAAA-
1 AAAAAAG
*
7589716 AATAAAAA
1 AA-AAAAG
7589724 AAAGAAAG
1 AAA-AAAG
7589732 AAAAAA
1 AAAAAA
7589738 AGGACAAAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
6 8 0.12
7 22 0.33
8 34 0.51
9 3 0.04
ACGTcount: A:0.81, C:0.01, G:0.12, T:0.06
Consensus pattern (7 bp):
AAAAAAG
Found at i:7589662 original size:8 final size:8
Alignment explanation
Indices: 7589648--7589739 Score: 59
Period size: 7 Copynumber: 11.8 Consensus size: 8
7589638 AAGGTGTACT
7589648 AAAAA-AA
1 AAAAAGAA
*
7589655 AGAAA-AA
1 AAAAAGAA
7589662 AAAAAGCAA
1 AAAAAG-AA
7589671 AAAGAAGAA
1 AAA-AAGAA
*
7589680 GAAAATGAA
1 -AAAAAGAA
*
7589689 AAAATG-A
1 AAAAAGAA
*
7589696 AAAATGAA
1 AAAAAGAA
*
7589704 AAAATGAA
1 AAAAAGAA
*
7589712 AAAAA-AT
1 AAAAAGAA
7589719 AAAAA-AA
1 AAAAAGAA
*
7589726 AGAAAGAA
1 AAAAAGAA
7589734 AAAAAG
1 AAAAAG
7589740 GACAAAGGAT
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
7 28 0.39
8 26 0.37
9 11 0.15
10 6 0.08
ACGTcount: A:0.80, C:0.01, G:0.13, T:0.05
Consensus pattern (8 bp):
AAAAAGAA
Found at i:7590765 original size:42 final size:41
Alignment explanation
Indices: 7590719--7590852 Score: 105
Period size: 42 Copynumber: 3.2 Consensus size: 41
7590709 TCCTTGCAAA
7590719 TCTTGCATCTTTGTGAATCTAGAACCTTTACAAAACTTGGAG
1 TCTTGCATCTTTGT-AATCTAGAACCTTTACAAAACTTGGAG
* * * *
7590761 TCTTGGAATCTTTCT-TTCTCATGAA-C-TTA-AAAATCCTTGTGAA
1 TCTT-GCATCTTTGTAATCT-A-GAACCTTTACAAAA--CTTG-GAG
* * *
7590804 TCTTGCATCTTTGCAAATCTAGAACCTTTGCAAAACTTAGAG
1 TCTTGCATCTTTG-TAATCTAGAACCTTTACAAAACTTGGAG
7590846 TCTTGCA
1 TCTTGCA
7590853 AATCTTTCTT
Statistics
Matches: 70, Mismatches: 11, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
40 4 0.06
41 6 0.09
42 29 0.41
43 22 0.31
44 5 0.07
45 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.37
Consensus pattern (41 bp):
TCTTGCATCTTTGTAATCTAGAACCTTTACAAAACTTGGAG
Found at i:7590901 original size:86 final size:87
Alignment explanation
Indices: 7590648--7591022 Score: 467
Period size: 86 Copynumber: 4.4 Consensus size: 87
7590638 CATCTTTATG
* * * **
7590648 AATCTAAAACCTTTGCAAAACTTGGAGTTTTGCGAATCTTTCTTTCTTG-AGAATTTGAAAATCC
1 AATCTAGAACCTTTGCAAAACTTGGAGTCTTGCAAATCTTTCTTTCTTGCAGAACCTGAAAATCC
**
7590712 TTGCAAATCTTGCATCTTTGTG
66 TTGCAAATCTTGCATCTTTGCA
* * * *
7590734 AATCTAGAACCTTTACAAAACTTGGAGTCTTG-GAATCTTTCTTTC-T-CATGAACTTAAAAATC
1 AATCTAGAACCTTTGCAAAACTTGGAGTCTTGCAAATCTTTCTTTCTTGCA-GAACCTGAAAATC
**
7590796 CTTGTGAATCTTGCATCTTTGCA
65 CTTGCAAATCTTGCATCTTTGCA
*
7590819 AATCTAGAACCTTTGCAAAACTTAGAGTCTTGCAAATCTTTCTTTCTTGCA-AACCTGAAAATCC
1 AATCTAGAACCTTTGCAAAACTTGGAGTCTTGCAAATCTTTCTTTCTTGCAGAACCTGAAAATCC
* **
7590883 TTGCAAATCTTACATCTTTGTG
66 TTGCAAATCTTGCATCTTTGCA
* ** *
7590905 AATCTAGAACCTTAGTGAAACTTGGAGTCTTGCAAATCTTTCTTTCTTGC-GAGCCTGAAAATCC
1 AATCTAGAACCTTTGCAAAACTTGGAGTCTTGCAAATCTTTCTTTCTTGCAGAACCTGAAAATCC
* *
7590969 TTACGAATCTTGCATCTTTGCA
66 TTGCAAATCTTGCATCTTTGCA
**
7590991 AATCTA-AACCTTTGTGAAACTTGGAGTCTTGC
1 AATCTAGAACCTTTGCAAAACTTGGAGTCTTGC
7591023 GAATTTGAAA
Statistics
Matches: 253, Mismatches: 30, Indels: 13
0.85 0.10 0.04
Matches are distributed among these distances:
84 2 0.01
85 98 0.39
86 150 0.59
87 1 0.00
88 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (87 bp):
AATCTAGAACCTTTGCAAAACTTGGAGTCTTGCAAATCTTTCTTTCTTGCAGAACCTGAAAATCC
TTGCAAATCTTGCATCTTTGCA
Found at i:7590928 original size:171 final size:171
Alignment explanation
Indices: 7590648--7591022 Score: 522
Period size: 171 Copynumber: 2.2 Consensus size: 171
7590638 CATCTTTATG
* * **
7590648 AATCTAAAACCTTTGCAAAACTTGGAGTTTTGCGAATCTTTCTTTCTTGAGAATTTGAAAATCCT
1 AATCT-AAACCTTTGCAAAACTTGGAGTCTTGCAAATCTTTCTTTCTTGAGAACCTGAAAATCCT
* *
7590713 TGCAAATCTTGCATCTTTGTGAATCTAGAACCTTTACAAAACTTGGAGTCTTG-GAATCTTTCTT
65 TGCAAATCTTACATCTTTGTGAATCTAGAACCTTTACAAAACTTGGAGTCTTGCAAATCTTTCTT
* * **
7590777 TCTCATGAACTTAAAAATCCTTGTGAATCTTGCATCTTTGCA
130 TCTCACGAACCTAAAAATCCTTACGAATCTTGCATCTTTGCA
*
7590819 AATCTAGAACCTTTGCAAAACTTAGAGTCTTGCAAATCTTTCTTTCTTGCA-AACCTGAAAATCC
1 AATCTA-AACCTTTGCAAAACTTGGAGTCTTGCAAATCTTTCTTTCTTG-AGAACCTGAAAATCC
**
7590883 TTGCAAATCTTACATCTTTGTGAATCTAGAACC-TTAGTGAAACTTGGAGTCTTGCAAATCTTTC
64 TTGCAAATCTTACATCTTTGTGAATCTAGAACCTTTA-CAAAACTTGGAGTCTTGCAAATCTTTC
** * *
7590947 TTTCTTGCGAGCCTGAAAATCCTTACGAATCTTGCATCTTTGCA
128 TTTCTCACGAACCTAAAAATCCTTACGAATCTTGCATCTTTGCA
**
7590991 AATCTAAACCTTTGTGAAACTTGGAGTCTTGC
1 AATCTAAACCTTTGCAAAACTTGGAGTCTTGC
7591023 GAATTTGAAA
Statistics
Matches: 180, Mismatches: 20, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
170 4 0.02
171 125 0.69
172 51 0.28
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (171 bp):
AATCTAAACCTTTGCAAAACTTGGAGTCTTGCAAATCTTTCTTTCTTGAGAACCTGAAAATCCTT
GCAAATCTTACATCTTTGTGAATCTAGAACCTTTACAAAACTTGGAGTCTTGCAAATCTTTCTTT
CTCACGAACCTAAAAATCCTTACGAATCTTGCATCTTTGCA
Found at i:7591923 original size:15 final size:15
Alignment explanation
Indices: 7591900--7591931 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7591890 CATTAGTATC
7591900 ATGCCATATTATATT
1 ATGCCATATTATATT
*
7591915 ATGCTATATTATATT
1 ATGCCATATTATATT
7591930 AT
1 AT
7591932 ATTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.50
Consensus pattern (15 bp):
ATGCCATATTATATT
Found at i:7591939 original size:3 final size:3
Alignment explanation
Indices: 7591921--7591999 Score: 108
Period size: 3 Copynumber: 27.0 Consensus size: 3
7591911 TATTATGCTA
* * *
7591921 TAT TA- TAT TA- TAT TAT TAT TAT TAT TAT CAT TAT CAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
7591967 CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7592000 AATATATTTC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
2 4 0.06
3 62 0.94
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:7592373 original size:20 final size:20
Alignment explanation
Indices: 7592348--7592385 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7592338 TTCTAAAATC
7592348 GATTTG-AGATTTTTGGGTGT
1 GATTTGAAGA-TTTTGGGTGT
7592368 GATTTGAAGATTTTGGGT
1 GATTTGAAGATTTTGGGT
7592386 TTAATTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.18, C:0.00, G:0.34, T:0.47
Consensus pattern (20 bp):
GATTTGAAGATTTTGGGTGT
Found at i:7592392 original size:20 final size:20
Alignment explanation
Indices: 7592349--7592392 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7592339 TCTAAAATCG
*
7592349 ATTTGAGATTTTTGGGTGTG
1 ATTTGAGATTTTTGGGTGTA
*
7592369 ATTTGAAGA-TTTTGGGTTTA
1 ATTTG-AGATTTTTGGGTGTA
7592389 ATTT
1 ATTT
7592393 TAGGTTGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.52
Consensus pattern (20 bp):
ATTTGAGATTTTTGGGTGTA
Found at i:7593024 original size:32 final size:31
Alignment explanation
Indices: 7592957--7593031 Score: 98
Period size: 32 Copynumber: 2.3 Consensus size: 31
7592947 TAAAAACAAC
7592957 CAAAAAATAAAAAAAATCTTTTCAAATAAGTTTT
1 CAAAAAATAAAAAAAATCTTTT---ATAAGTTTT
7592991 CAAAACAATAATAAAAAATCTTTT-TAAGTTTT
1 CAAAA-AATAA-AAAAAATCTTTTATAAGTTTT
7593023 CAAAAAATA
1 CAAAAAATA
7593032 TTTATAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
31 4 0.10
32 13 0.33
34 5 0.13
35 5 0.13
36 12 0.31
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.32
Consensus pattern (31 bp):
CAAAAAATAAAAAAAATCTTTTATAAGTTTT
Found at i:7595833 original size:16 final size:16
Alignment explanation
Indices: 7595812--7595862 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
7595802 GTTTGTGTTT
7595812 TTAAAAATTCAAAACC
1 TTAAAAATTCAAAACC
*
7595828 TTAAAAATCCAAAATCC
1 TTAAAAATTCAAAA-CC
7595845 -T-AAAA-TCAAAACC
1 TTAAAAATTCAAAACC
*
7595858 CTAAA
1 TTAAA
7595863 TCCTCCAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
13 2 0.07
14 6 0.20
15 6 0.20
16 14 0.47
17 2 0.07
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.22
Consensus pattern (16 bp):
TTAAAAATTCAAAACC
Found at i:7595891 original size:29 final size:29
Alignment explanation
Indices: 7595815--7595929 Score: 90
Period size: 30 Copynumber: 3.9 Consensus size: 29
7595805 TGTGTTTTTA
* ** *
7595815 AAAATTCAAAACCTTAAAAATCCAAAATCCT
1 AAAA-TCAAAACCATAAACCTCC-AAACCCT
*
7595846 AAAATCAAAACCCTAAATCCTCCAAACCCT
1 AAAATCAAAACCATAAA-CCTCCAAACCCT
* *
7595876 AAAAT-TAAACCATAAACCTCCAAACTCT
1 AAAATCAAAACCATAAACCTCCAAACCCT
* * * *
7595904 AAAAACGAAACCCTAAA-ATCCAAACC
1 AAAATCAAAACCATAAACCTCCAAACC
7595930 TCAAAACCTT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
28 22 0.31
29 18 0.26
30 23 0.33
31 7 0.10
ACGTcount: A:0.52, C:0.30, G:0.01, T:0.17
Consensus pattern (29 bp):
AAAATCAAAACCATAAACCTCCAAACCCT
Found at i:7595900 original size:28 final size:30
Alignment explanation
Indices: 7595843--7595907 Score: 89
Period size: 28 Copynumber: 2.2 Consensus size: 30
7595833 AATCCAAAAT
*
7595843 CCTAAAATCAAAACCCTAAATCCTCCAAAC
1 CCTAAAATCAAAACCATAAATCCTCCAAAC
*
7595873 CCTAAAAT-TAAACCATAAA-CCTCCAAAC
1 CCTAAAATCAAAACCATAAATCCTCCAAAC
*
7595901 TCTAAAA
1 CCTAAAA
7595908 ACGAAACCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
28 15 0.47
29 9 0.28
30 8 0.25
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.18
Consensus pattern (30 bp):
CCTAAAATCAAAACCATAAATCCTCCAAAC
Found at i:7595925 original size:28 final size:29
Alignment explanation
Indices: 7595821--7595936 Score: 85
Period size: 29 Copynumber: 4.0 Consensus size: 29
7595811 TTTAAAAATT
* * * *
7595821 CAAAACCTTAAAAATCCAAAATCCTAAAAT
1 CAAAACCCTAAACATCCAAACT-CTAAAAA
* *
7595851 CAAAACCCTAAATCCTCCAAACCCT-AAAA
1 CAAAACCCTAAA-CATCCAAACTCTAAAAA
** * *
7595880 TTAAACCATAAACCTCCAAACTCTAAAAA
1 CAAAACCCTAAACATCCAAACTCTAAAAA
* *
7595909 CGAAACCCTAAA-ATCCAAAC-CTCAAAA
1 CAAAACCCTAAACATCCAAACTCTAAAAA
7595936 C
1 C
7595937 CTTCGAAACC
Statistics
Matches: 69, Mismatches: 15, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
27 7 0.10
28 18 0.26
29 25 0.36
30 13 0.19
31 6 0.09
ACGTcount: A:0.52, C:0.31, G:0.01, T:0.16
Consensus pattern (29 bp):
CAAAACCCTAAACATCCAAACTCTAAAAA
Found at i:7599483 original size:4 final size:4
Alignment explanation
Indices: 7599462--7599530 Score: 75
Period size: 4 Copynumber: 17.2 Consensus size: 4
7599452 GTTTTGTTAG
* * * * * *
7599462 TCAT GCAT TCAC TCAT TCAT TCAT TTAT TCAT TCGT GCAT TCAT TTAT
1 TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT
*
7599510 TCAT TCAT TCAT TCAT CCAT T
1 TCAT TCAT TCAT TCAT TCAT T
7599531 TATGTATACG
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
4 51 1.00
ACGTcount: A:0.23, C:0.25, G:0.04, T:0.48
Consensus pattern (4 bp):
TCAT
Found at i:7608336 original size:17 final size:18
Alignment explanation
Indices: 7608316--7608352 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
7608306 AAATCATCGG
*
7608316 TTATGTAAA-TCTCATAA
1 TTATGTAAACTCGCATAA
7608333 TTATGTAAACTCGCATAA
1 TTATGTAAACTCGCATAA
7608351 TT
1 TT
7608353 TAATAGAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.41
Consensus pattern (18 bp):
TTATGTAAACTCGCATAA
Found at i:7619062 original size:28 final size:28
Alignment explanation
Indices: 7619028--7619097 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
7619018 CGGGCTAATA
7619028 CCCGATTTCAATTCAATTGGGCTTCAAG
1 CCCGATTTCAATTCAATTGGGCTTCAAG
* * *
7619056 CGCGATTTGAATTTAATTGGGCTTCAAG
1 CCCGATTTCAATTCAATTGGGCTTCAAG
*
7619084 CCCAATTTCAATTC
1 CCCGATTTCAATTC
7619098 TACTGACCCT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (28 bp):
CCCGATTTCAATTCAATTGGGCTTCAAG
Found at i:7627570 original size:49 final size:49
Alignment explanation
Indices: 7627513--7628199 Score: 610
Period size: 49 Copynumber: 14.0 Consensus size: 49
7627503 TTTTGAGAAC
* * * *
7627513 AGAT-AGAATTTTAAAGTTGTTGAGCCTTTTCTGAGATGAGCTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * **
7627561 AGACGAGAATTTTTAAAGTTGTTGAG-CTTTTATAGAGAGGAGC-TTTTCA
1 AGATGAG-ATTTTTAAAGTTGTTGAGCCTCTGCT-GAGAGGAGCTTTTTCA
*
7627610 AGATG-GATTTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCCTTTTT-A
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCA
* * * * **
7627658 AGA-CAGAATTTTAAAGTTGTTAAGCCTCTACTGAGATAAGCTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * * *
7627706 AGTTGAAGATTTTTTTAAAGTTATTGAGCTTCGGCTAAGAGGAGCTTTTTTC-
1 AGATG-AGA--TTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTCA
* * * * * * *
7627758 ATATGAGATTTTTAAAATTGCTGAGCCTTTGCTGAAAGAAGCTTTTTGA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * *
7627807 AGATGAAGATTTTTAAAGTTGTTGAACCTCAGCTTAGAGGAACTTTTTTCA
1 AGATG-AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTCA
* * * *
7627858 A-ATGAGATTTTTAAAGTTATTGAGCATCTGCTTAGATGAGCTTTTTC-
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * *
7627905 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGTTTAGATTG-GCTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGA-GGAGCTTTTTCA
* * *
7627954 AGATGAGAATTTTTAAAGTTGTTGAGCCTCTGCTAAAATGAGCTTTTTTCA
1 AGATGAG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTCA
* * * *
7628005 A-ATGAGATTTTTAAAGTTGTTGAACCTCTACTTAGAGGA-ATTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* *
7628052 AGATGAGGATTTTTAAAGTTGTTGAGCCTCTGTTGAGATGAGCTTTTTTC-
1 AGATGA-GATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTCA
* * * ** * *
7628102 AGATAAGATTTTCAAACTCATTGAGCCTCTGCTTAGAGGAACTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * * *
7628151 AGA-CAAAATTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGTCTCTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCA
7628200 GATTTTAAAG
Statistics
Matches: 517, Mismatches: 94, Indels: 55
0.78 0.14 0.08
Matches are distributed among these distances:
47 40 0.08
48 133 0.26
49 188 0.36
50 98 0.19
51 24 0.05
52 28 0.05
53 6 0.01
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (49 bp):
AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
Found at i:7628246 original size:42 final size:43
Alignment explanation
Indices: 7628158--7628250 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
7628148 TCAAGACAAA
* *
7628158 ATTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGTCTCTTTCAG
1 ATTTTAAAGTTGTTAAGCCTTTGCCGAGAGGAGTCTCTTTCAG
*
7628201 ATTTTAAAGTTGTTAAGCCTTTGCCGAG-GGAGTCTCTTTTAG
1 ATTTTAAAGTTGTTAAGCCTTTGCCGAGAGGAGTCTCTTTCAG
7628243 ATTTTAAA
1 ATTTTAAA
7628251 TTTTTAAAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 21 0.45
43 26 0.55
ACGTcount: A:0.24, C:0.13, G:0.23, T:0.41
Consensus pattern (43 bp):
ATTTTAAAGTTGTTAAGCCTTTGCCGAGAGGAGTCTCTTTCAG
Found at i:7628524 original size:28 final size:28
Alignment explanation
Indices: 7628489--7628563 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
7628479 GGGTCGATAT
7628489 CCGATTTCAATTCAACTGGGCTTCAGGC
1 CCGATTTCAATTCAACTGGGCTTCAGGC
* * * *
7628517 CCTATTTCAATTTAATTAGGCTTCAGGC
1 CCGATTTCAATTCAACTGGGCTTCAGGC
* *
7628545 TCGATTTCAATTCCACTGG
1 CCGATTTCAATTCAACTGG
7628564 CCCTAAAGTC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (28 bp):
CCGATTTCAATTCAACTGGGCTTCAGGC
Found at i:7628669 original size:8 final size:8
Alignment explanation
Indices: 7628650--7628746 Score: 107
Period size: 8 Copynumber: 12.6 Consensus size: 8
7628640 TTATTAAATT
7628650 AAAAATAC
1 AAAAATAC
7628658 -AAAATAC
1 AAAAATAC
7628665 AAAAATA-
1 AAAAATAC
*
7628672 TAAAAT--
1 AAAAATAC
7628678 AAAAATAC
1 AAAAATAC
7628686 AAAAATAC
1 AAAAATAC
*
7628694 AAAAATAT
1 AAAAATAC
7628702 AAAAATAC
1 AAAAATAC
7628710 -AAAATACC
1 AAAAATA-C
7628718 AAAAAATAC
1 -AAAAATAC
*
7628727 CAAAATAC
1 AAAAATAC
7628735 -AAAATAC
1 AAAAATAC
7628742 AAAAA
1 AAAAA
7628747 AAATAAAAAA
Statistics
Matches: 77, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
6 5 0.06
7 25 0.32
8 40 0.52
9 1 0.01
10 6 0.08
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.14
Consensus pattern (8 bp):
AAAAATAC
Found at i:7628670 original size:15 final size:15
Alignment explanation
Indices: 7628650--7628746 Score: 101
Period size: 15 Copynumber: 6.3 Consensus size: 15
7628640 TTATTAAATT
7628650 AAAAATACAAAATAC
1 AAAAATACAAAATAC
*
7628665 AAAAATATAAAAT--
1 AAAAATACAAAATAC
7628678 AAAAATACAAAAATAC
1 AAAAATAC-AAAATAC
*
7628694 AAAAATATAAAAATAC
1 AAAAATA-CAAAATAC
7628710 -AAAATACCAAAAAATAC
1 AAAAATA-C--AAAATAC
*
7628727 CAAAATACAAAATAC
1 AAAAATACAAAATAC
7628742 AAAAA
1 AAAAA
7628747 AAATAAAAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
13 7 0.10
14 5 0.07
15 29 0.42
16 14 0.20
17 8 0.12
18 6 0.09
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAAATACAAAATAC
Found at i:7628754 original size:7 final size:7
Alignment explanation
Indices: 7628645--7628764 Score: 75
Period size: 8 Copynumber: 16.4 Consensus size: 7
7628635 TTATTTTATT
*
7628645 AAATTAA
1 AAATAAA
*
7628652 AAATACA
1 AAATAAA
7628659 AAATACAA
1 AAATA-AA
*
7628667 AAATATA
1 AAATAAA
7628674 AAAT-AA
1 AAATAAA
7628680 AAATACAA
1 AAATA-AA
7628688 AAATACAA
1 AAATA-AA
7628696 AAATATAA
1 AAATA-AA
7628704 AAATACAA
1 AAATA-AA
*
7628712 AATACCAAA
1 AA-A-TAAA
*
7628721 AAATACCA
1 AAATA-AA
*
7628729 AAATACA
1 AAATAAA
*
7628736 AAATACA
1 AAATAAA
7628743 AAA-AAA
1 AAATAAA
*
7628749 ATA-AAA
1 AAATAAA
7628755 AAATAAA
1 AAATAAA
7628762 AAA
1 AAA
7628765 GGGGGCATGG
Statistics
Matches: 93, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
6 14 0.15
7 34 0.37
8 39 0.42
9 5 0.05
10 1 0.01
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (7 bp):
AAATAAA
Found at i:7628762 original size:15 final size:15
Alignment explanation
Indices: 7628645--7628764 Score: 75
Period size: 15 Copynumber: 7.7 Consensus size: 15
7628635 TTATTTTATT
* *
7628645 AAATTAAAAAT-ACA
1 AAATAAAAAATAAAA
*
7628659 AAATACAAAAAT-ATA
1 AAATA-AAAAATAAAA
*
7628674 AAAT-AAAAATACAA
1 AAATAAAAAATAAAA
*
7628688 AAATACAAAAATATAA
1 AAATA-AAAAATAAAA
*
7628704 AAATACAAAATACCAAA
1 AAATAAAAAATA--AAA
*
7628721 AAATACCAAAATACAAA
1 AAATA-AAAAATA-AAA
*
7628738 ATACAAAAAAAATAAAA
1 A-A-ATAAAAAATAAAA
7628755 AAATAAAAAA
1 AAATAAAAAA
7628765 GGGGGCATGG
Statistics
Matches: 87, Mismatches: 10, Indels: 17
0.76 0.09 0.15
Matches are distributed among these distances:
13 6 0.07
14 9 0.10
15 25 0.29
16 15 0.17
17 16 0.18
18 14 0.16
19 2 0.02
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (15 bp):
AAATAAAAAATAAAA
Found at i:7628762 original size:24 final size:23
Alignment explanation
Indices: 7628673--7628762 Score: 90
Period size: 24 Copynumber: 3.7 Consensus size: 23
7628663 ACAAAAATAT
*
7628673 AAAATAAAAATACAAAAATACAAA
1 AAAATAAAAAAAC-AAAATACAAA
* * *
7628697 AATATAAAAATACAAAATACCAA
1 AAAATAAAAAAACAAAATACAAA
*
7628720 AAAATACCAAAATACAAAATACAAAA
1 AAAATA--AAAAAACAAAATAC-AAA
*
7628746 AAAATAAAAAAATAAAA
1 AAAATAAAAAAACAAAA
7628763 AAGGGGGCAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.25
24 21 0.37
25 14 0.25
26 8 0.14
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (23 bp):
AAAATAAAAAAACAAAATACAAA
Found at i:7629056 original size:13 final size:13
Alignment explanation
Indices: 7629038--7629063 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7629028 AAGAGATCCA
7629038 AAAAAAAAAAAGT
1 AAAAAAAAAAAGT
7629051 AAAAAAAAAAAGT
1 AAAAAAAAAAAGT
7629064 TTCCAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (13 bp):
AAAAAAAAAAAGT
Found at i:7630275 original size:49 final size:50
Alignment explanation
Indices: 7630180--7630842 Score: 456
Period size: 49 Copynumber: 13.5 Consensus size: 50
7630170 TTTTGAGAAC
7630180 AGAT-AGAA-TTTTAAAGTTGTTGAGCCTTTTCT-GAGAGGAGCTTTTTCA
1 AGATGAGAATTTTTAAAGTTGTTGAG-CTTTTCTAGAGAGGAGCTTTTTCA
* *
7630228 AGACGAGAATTTTTAAAGTTGTTGAGCTTTTATAGAGAGGAGC-TTTTCA
1 AGATGAGAATTTTTAAAGTTGTTGAGCTTTTCTAGAGAGGAGCTTTTTCA
* * * *
7630277 AGATG-G-ATTTTTAAAGTTGTTGAGCCTCTGCT-GAAAAGAGCCTTTTT-A
1 AGATGAGAATTTTTAAAGTTGTTGAG-CTTTTCTAGAGAGGAG-CTTTTTCA
* * *** * *
7630325 AGA-CAGAA-TTTTAAAGTTGTTAAGCCTCGACTA-AGATGAGCATTTTCA
1 AGATGAGAATTTTTAAAGTTGTTGAG-CTTTTCTAGAGAGGAGCTTTTTCA
* * * *
7630373 AGTTAAGGATTTTTTAAAAGTTGTTGAGCTTTTGCTA-AGACGAGCTTTTTTCA
1 AGATGA-GAATTTTT-AAAGTTGTTGAGCTTTT-CTAGAGAGGAGC-TTTTTCA
* * * *
7630426 A-ATGAG-ATTTTTAAAGTTGCTGAGCCTTTGCT-GAAAGGAGCTTTTTGA
1 AGATGAGAATTTTTAAAGTTGTTGAG-CTTTTCTAGAGAGGAGCTTTTTCA
* * * ** *
7630474 AGATGA-AGATTTTTAAAGTTGTTGAGCCTATGTTTAGAGGAACTTTTTTC-
1 AGATGAGA-ATTTTTAAAGTTGTTGAGCTTTTCTAGAGAGGAGC-TTTTTCA
* * * *
7630524 AGATGAG-ATTTTTAAAGTTATTGAGCATTTGCT-TAGAGGAGC-TTTTCC
1 AGATGAGAATTTTTAAAGTTGTTGAGC-TTTTCTAGAGAGGAGCTTTTTCA
* *
7630572 AGATGAG-ATTTTTAAAGTTGTTGAGCTTCTGTTTAGATA--AGCTTTTTCA
1 AGATGAGAATTTTTAAAGTTGTTGAGCTT-T-TCTAGAGAGGAGCTTTTTCA
* *
7630621 AGATGAGAATTTTTAAAGTTGTTGAGCCTCTGCTA-AGAGGAGCTTTTTCCA
1 AGATGAGAATTTTTAAAGTTGTTGAG-CTTTTCTAGAGAGGAGCTTTTT-CA
* * * *
7630672 A-ATGAG-ATTTTCAAAGTTGTTGAGCCTTTACT-TAGAGGA-ATTTTTCA
1 AGATGAGAATTTTTAAAGTTGTTGAG-CTTTTCTAGAGAGGAGCTTTTTCA
* * * *
7630719 AGATGAGGATTTTTAAAGTTGTTGAGCCTCTGTAGAGAGGAGCTTTTTTCA
1 AGATGAGAATTTTTAAAGTTGTTGAGCTTTTCTAGAGAGGAGC-TTTTTCA
* ** * * * *
7630770 A-ATAAG-ATTTTTAAAGTCATTGAGCCTCTGCT-TAGAGGAACTTTTTCA
1 AGATGAGAATTTTTAAAGTTGTTGAG-CTTTTCTAGAGAGGAGCTTTTTCA
* *
7630818 AGA-CA-AAATTTTAAAGTTGTTGAGC
1 AGATGAGAATTTTTAAAGTTGTTGAGC
7630843 CTTTGCCGAG
Statistics
Matches: 489, Mismatches: 82, Indels: 89
0.74 0.12 0.13
Matches are distributed among these distances:
47 40 0.08
48 118 0.24
49 169 0.35
50 107 0.22
51 25 0.05
52 23 0.05
53 7 0.01
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (50 bp):
AGATGAGAATTTTTAAAGTTGTTGAGCTTTTCTAGAGAGGAGCTTTTTCA
Found at i:7630624 original size:147 final size:145
Alignment explanation
Indices: 7630180--7630848 Score: 619
Period size: 147 Copynumber: 4.6 Consensus size: 145
7630170 TTTTGAGAAC
* * * *
7630180 AGAT-AGAATTTTAAAGTTGTTGAGCCTTTTCTGAGAGGAGC-TTTTTCAAGACGAGAATTTTTA
1 AGATAAGATTTTTAAAGTTGTTGAGCC-TTGCTTAGAGGAGCTTTTTTCAAGATGAG-ATTTTTA
** *
7630243 AAGTTGTTGAGCTTTTATAGAGAGGAGCTTTTCAAGATG-GATTTTTAAAGTTGTTGAGCCTCTG
64 AAGTTGTTGAGCTTTGCT-TAGAGGAGCTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTCTG
*
7630307 CTGA-AAAGAGCCTTTTT-A
128 CTGAGAGA-AG-CTTTTTCA
* * * * * * * * *
7630325 AGA-CAGAATTTTAAAGTTGTTAAGCCTCGACTAAGATGAGC-ATTTTCAAGTTAAGGATTTTTT
1 AGATAAGATTTTTAAAGTTGTTGAGCCTTG-CTTAGAGGAGCTTTTTTCAAGATGA-GA-TTTTT
* * *
7630388 AAAAGTTGTTGAGCTTTTGCTAAGACGAGCTTTTTTCAA-ATGAGATTTTTAAAGTTGCTGAGCC
63 -AAAGTTGTTGAGC-TTTGCTTAGAGGAGC--TTTTCAAGATGAGATTTTTAAAGTTGTTGAGCC
* * * *
7630452 TTTGCTGAAAGGAGCTTTTTGA
124 TCTGCTGAGAGAAGCTTTTTCA
* *
7630474 AGATGAAGATTTTTAAAGTTGTTGAGCCTATGTTTAGAGGAACTTTTTTC-AGATGAGATTTTTA
1 AGAT-AAGATTTTTAAAGTTGTTGAGCCT-TGCTTAGAGGAGCTTTTTTCAAGATGAGATTTTTA
* * *
7630538 AAGTTATTGAGCATTTGCTTAGAGGAGCTTTTCCAGATGAGATTTTTAAAGTTGTTGAGCTTCTG
64 AAGTTGTTGAGC-TTTGCTTAGAGGAGCTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTCTG
* * *
7630603 TTTAGATAAGCTTTTTCA
128 CTGAGAGAAGCTTTTTCA
* * * *
7630621 AGATGAGAATTTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGCTTTTTCCAA-ATGAGATTTTCA
1 AGATAAG-ATTTTTAAAGTTGTTGAGCCT-TGCTTAGAGGAGCTTTTTTCAAGATGAGATTTTTA
* **
7630685 AAGTTGTTGAGCCTTTACTTAGAGGAATTTTTCAAGATGAGGATTTTTAAAGTTGTTGAGCCTCT
64 AAGTTGTTGAG-CTTTGCTTAGAGGAGCTTTTCAAGATGA-GATTTTTAAAGTTGTTGAGCCTCT
*
7630750 G-TAGAGAGGAGCTTTTTTCA
127 GCT-GAGAGAAGC-TTTTTCA
** * * * *
7630770 A-ATAAGATTTTTAAAGTCATTGAGCCTCTGCTTAGAGGAAC-TTTTTCAAGA-CAAAATTTTAA
1 AGATAAGATTTTTAAAGTTGTTGAGCCT-TGCTTAGAGGAGCTTTTTTCAAGATGAGATTTTTAA
7630832 AGTTGTTGAGCCTTTGC
65 AGTTGTTGAG-CTTTGC
7630849 CGAGAAGATT
Statistics
Matches: 432, Mismatches: 69, Indels: 45
0.79 0.13 0.08
Matches are distributed among these distances:
144 1 0.00
145 43 0.10
146 44 0.10
147 176 0.41
148 74 0.17
149 53 0.12
150 3 0.01
151 32 0.07
152 6 0.01
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.39
Consensus pattern (145 bp):
AGATAAGATTTTTAAAGTTGTTGAGCCTTGCTTAGAGGAGCTTTTTTCAAGATGAGATTTTTAAA
GTTGTTGAGCTTTGCTTAGAGGAGCTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTG
AGAGAAGCTTTTTCA
Found at i:7630646 original size:98 final size:99
Alignment explanation
Indices: 7630179--7630853 Score: 579
Period size: 98 Copynumber: 6.9 Consensus size: 99
7630169 ATTTTGAGAA
* * * * *
7630179 CAGAT-AGAATTTTAAAGTTGTTGAGCCTT-TTCTGAGAGGAGCTTTTTCAAGACGAGAATTTTT
1 CAGATGAGATTTTTAAAGTTGTTGAG-CTTCTGCTTAGAGAAGCTTTTTCAAGATGAGAATTTTT
**
7630242 AAAGTTGTTGAG-CTTTTATAGAGAGGAGC-TTTTC
65 AAAGTTGTTGAGCCTTTGCT-GAGAGGAGCTTTTTC
* * * * *
7630276 AAGATG-GATTTTTAAAGTTGTTGAGCCTCTGCTGA-AAAGAGCCTTTTT-AAGA-CAGAA-TTT
1 CAGATGAGATTTTTAAAGTTGTTGAGCTTCTGCTTAGAGA-AG-CTTTTTCAAGATGAGAATTTT
* * * * *
7630336 TAAAGTTGTTAAGCC-TCGACTAAGATGAGCATTTTC
64 TAAAGTTGTTGAGCCTTTG-CTGAGAGGAGCTTTTTC
* * * * *
7630372 AAGTTAAGGATTTTTTAAAAGTTGTTGAGCTTTTGCTAAGACG-AGCTTTTTTCAA-ATGAG-AT
1 CAGATGA-GA-TTTTT-AAAGTTGTTGAGCTTCTGCTTAGA-GAAGC-TTTTTCAAGATGAGAAT
* * *
7630434 TTTTAAAGTTGCTGAGCCTTTGCTGAAAGGAGCTTTTTG
61 TTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTC
* * * *
7630473 AAGATGAAGATTTTTAAAGTTGTTGAGCCTATGTTTAGAGGAA-CTTTTTTC-AGATGAG-ATTT
1 CAGATG-AGATTTTTAAAGTTGTTGAGCTTCTGCTTAGA-GAAGC-TTTTTCAAGATGAGAATTT
* * *
7630535 TTAAAGTTATTGAGCATTTGCTTAGAGGAGC-TTTTC
63 TTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTC
* *
7630571 CAGATGAGATTTTTAAAGTTGTTGAGCTTCTGTTTAGATAAGCTTTTTCAAGATGAGAATTTTTA
1 CAGATGAGATTTTTAAAGTTGTTGAGCTTCTGCTTAGAGAAGCTTTTTCAAGATGAGAATTTTTA
* *
7630636 AAGTTGTTGAGCCTCTGCTAAGAGGAGCTTTTTC
66 AAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTC
* * * *
7630670 CAAATGAGATTTTCAAAGTTGTTGAGCCTT-TACTTAGAGGAA--TTTTTCAAGATGAGGATTTT
1 CAGATGAGATTTTTAAAGTTGTTGAG-CTTCTGCTTAGA-GAAGCTTTTTCAAGATGAGAATTTT
* *
7630732 TAAAGTTGTTGAGCCTCTG-TAGAGAGGAGCTTTTTT
64 TAAAGTTGTTGAGCCTTTGCT-GAGAGGAGCTTTTTC
* * ** * * *
7630768 CAAATAAGATTTTTAAAGTCATTGAGCCTCTGCTTAGAGGAA-CTTTTTCAAGA-CA-AAATTTT
1 CAGATGAGATTTTTAAAGTTGTTGAGCTTCTGCTTAGA-GAAGCTTTTTCAAGATGAGAATTTTT
*
7630830 AAAGTTGTTGAGCCTTTGCCGAGA
65 AAAGTTGTTGAGCCTTTGCTGAGA
7630854 AGATTCTCTT
Statistics
Matches: 479, Mismatches: 68, Indels: 62
0.79 0.11 0.10
Matches are distributed among these distances:
95 23 0.05
96 26 0.05
97 100 0.21
98 134 0.28
99 115 0.24
100 39 0.08
101 39 0.08
102 3 0.01
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (99 bp):
CAGATGAGATTTTTAAAGTTGTTGAGCTTCTGCTTAGAGAAGCTTTTTCAAGATGAGAATTTTTA
AAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTC
Found at i:7631154 original size:28 final size:28
Alignment explanation
Indices: 7631121--7631186 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
7631111 GCCGATATCC
7631121 GATTTCAATTTAACTGGGCTTCAGGCCTT
1 GATTTCAATTTAACTGGGCTTCAGG-CTT
*
7631150 -ATTTCAATTTAATTGGGCTTCAGGCTT
1 GATTTCAATTTAACTGGGCTTCAGGCTT
7631177 GATTTCAATT
1 GATTTCAATT
7631187 CCACTGGCCC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
27 3 0.09
28 32 0.91
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (28 bp):
GATTTCAATTTAACTGGGCTTCAGGCTT
Found at i:7631291 original size:7 final size:7
Alignment explanation
Indices: 7631281--7631377 Score: 77
Period size: 7 Copynumber: 12.6 Consensus size: 7
7631271 TATTAAATTA
7631281 AAAATAC
1 AAAATAC
*
7631288 AAAATATA
1 AAAATA-C
*
7631296 AAAATAT
1 AAAATAC
7631303 AAAATAC
1 AAAATAC
* *
7631310 AAAAAAT
1 AAAATAC
7631317 AAAATACC
1 AAAATA-C
7631325 AAAAAATAC
1 --AAAATAC
7631334 TAAAATAC
1 -AAAATAC
7631342 AAAATACC
1 AAAATA-C
7631350 AAAAAATAC
1 --AAAATAC
7631359 AAAAATAC
1 -AAAATAC
7631367 AAAATAC
1 AAAATAC
7631374 AAAA
1 AAAA
7631378 AAAATAAAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 14
0.77 0.08 0.14
Matches are distributed among these distances:
7 39 0.52
8 22 0.29
9 2 0.03
10 12 0.16
ACGTcount: A:0.73, C:0.11, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAATAC
Found at i:7631299 original size:15 final size:15
Alignment explanation
Indices: 7631280--7631378 Score: 103
Period size: 15 Copynumber: 6.3 Consensus size: 15
7631270 TTATTAAATT
*
7631280 AAAAATACAAAATAT
1 AAAAATACAAAATAC
*
7631295 AAAAATATAAAATAC
1 AAAAATACAAAATAC
*
7631310 AAAAA-ATAAAATACC
1 AAAAATACAAAATA-C
7631325 AAAAAATACTAAAATAC
1 -AAAAATAC-AAAATAC
7631342 -AAAATACCAAAAAATAC
1 AAAAATA-C--AAAATAC
7631359 AAAAATACAAAATAC
1 AAAAATACAAAATAC
7631374 AAAAA
1 AAAAA
7631379 AAATAAAAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
14 8 0.11
15 37 0.51
16 6 0.08
17 10 0.14
18 12 0.16
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.15
Consensus pattern (15 bp):
AAAAATACAAAATAC
Found at i:7631332 original size:10 final size:9
Alignment explanation
Indices: 7631317--7631395 Score: 59
Period size: 8 Copynumber: 9.4 Consensus size: 9
7631307 TACAAAAAAT
7631317 AAAATACCAA
1 AAAATA-CAA
*
7631327 AAAATAC-T
1 AAAATACAA
7631335 AAAATAC--
1 AAAATACAA
7631342 AAAATACCAA
1 AAAATA-CAA
7631352 AAAATAC-A
1 AAAATACAA
7631360 AAAATAC--
1 AAAATACAA
7631367 AAAATACAA
1 AAAATACAA
7631376 AAAA-A-ATA
1 AAAATACA-A
7631384 AAAA-ACAA
1 AAAATACAA
7631392 AAAA
1 AAAA
7631396 GGGGAGATGG
Statistics
Matches: 61, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
7 14 0.23
8 28 0.46
9 7 0.11
10 12 0.20
ACGTcount: A:0.76, C:0.13, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAATACAA
Found at i:7631345 original size:25 final size:25
Alignment explanation
Indices: 7631303--7631393 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 25
7631293 ATAAAAATAT
*
7631303 AAAATAC-AAAAAATAAAATACCAA
1 AAAATACTAAAAAACAAAATACCAA
*
7631327 AAAATACTAAAATACAAAATACCAA
1 AAAATACTAAAAAACAAAATACCAA
7631352 AAAATAC-AAAAATACAAAATA-CAA
1 AAAATACTAAAAA-ACAAAATACCAA
*
7631376 AAAA-AATAAAAAACAAAA
1 AAAATACTAAAAAACAAAA
7631394 AAGGGGAGAT
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
23 7 0.12
24 23 0.38
25 30 0.50
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (25 bp):
AAAATACTAAAAAACAAAATACCAA
Found at i:7631378 original size:8 final size:8
Alignment explanation
Indices: 7631280--7631378 Score: 84
Period size: 8 Copynumber: 12.6 Consensus size: 8
7631270 TTATTAAATT
7631280 AAAAATAC
1 AAAAATAC
*
7631288 -AAAATAT
1 AAAAATAC
7631295 AAAAATA-
1 AAAAATAC
*
7631302 TAAAATAC
1 AAAAATAC
7631310 AAAAA-A-
1 AAAAATAC
*
7631316 TAAAATACC
1 AAAAATA-C
7631325 AAAAAATAC
1 -AAAAATAC
*
7631334 TAAAATAC
1 AAAAATAC
7631342 -AAAATACC
1 AAAAATA-C
7631350 AAAAAATAC
1 -AAAAATAC
7631359 AAAAATAC
1 AAAAATAC
7631367 -AAAATAC
1 AAAAATAC
7631374 AAAAA
1 AAAAA
7631379 AAATAAAAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 20
0.74 0.06 0.20
Matches are distributed among these distances:
6 4 0.05
7 27 0.36
8 30 0.40
9 2 0.03
10 12 0.16
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.15
Consensus pattern (8 bp):
AAAAATAC
Found at i:7631386 original size:7 final size:7
Alignment explanation
Indices: 7631275--7631395 Score: 50
Period size: 8 Copynumber: 16.4 Consensus size: 7
7631265 TTGTTTTATT
*
7631275 AAATTAA
1 AAATAAA
7631282 AAATACAA
1 AAATA-AA
7631290 AATATAAA
1 AA-ATAAA
7631298 AATATAAA
1 AA-ATAAA
* *
7631306 ATACAAA
1 AAATAAA
7631313 AAATAAA
1 AAATAAA
**
7631320 ATACCAAA
1 A-AATAAA
*
7631328 AAATACTA
1 AAATA-AA
7631336 AAATACAA
1 AAATA-AA
*
7631344 AATACCAAA
1 AA-A-TAAA
7631353 AAATACAA
1 AAATA-AA
*
7631361 AAATACA
1 AAATAAA
7631368 AAAT--A
1 AAATAAA
*
7631373 CAA-AAA
1 AAATAAA
7631379 AAATAAA
1 AAATAAA
*
7631386 AAACAAA
1 AAATAAA
7631393 AAA
1 AAA
7631396 GGGGAGATGG
Statistics
Matches: 87, Mismatches: 17, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
5 3 0.03
6 3 0.03
7 34 0.39
8 38 0.44
9 8 0.09
10 1 0.01
ACGTcount: A:0.75, C:0.10, G:0.00, T:0.15
Consensus pattern (7 bp):
AAATAAA
Found at i:7631393 original size:15 final size:15
Alignment explanation
Indices: 7631280--7631395 Score: 63
Period size: 15 Copynumber: 7.3 Consensus size: 15
7631270 TTATTAAATT
*
7631280 AAAAATACAAAATATAA
1 AAAAATA-AAAA-ACAA
* *
7631297 AAATATAAAATAC-A
1 AAAAATAAAAAACAA
*
7631311 AAAAATAAAATACCAA
1 AAAAATAAAA-AACAA
*
7631327 AAAATACTAAAATACAA
1 AAAA-A-TAAAAAACAA
* ** * *
7631344 AATACCAAAAAATAC
1 AAAAATAAAAAACAA
7631359 AAAAATACAAAATACAAA
1 AAAAATA-AAAA-AC-AA
7631377 AAAAATAAAAAACAA
1 AAAAATAAAAAACAA
7631392 AAAA
1 AAAA
7631396 GGGGAGATGG
Statistics
Matches: 73, Mismatches: 19, Indels: 16
0.68 0.18 0.15
Matches are distributed among these distances:
14 10 0.14
15 18 0.25
16 14 0.19
17 18 0.25
18 13 0.18
ACGTcount: A:0.76, C:0.10, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAAATAAAAAACAA
Found at i:7632976 original size:48 final size:47
Alignment explanation
Indices: 7632815--7633478 Score: 259
Period size: 48 Copynumber: 13.9 Consensus size: 47
7632805 TTTTGAGAAC
* *
7632815 AGATAGAATTTTAAAGTTGTTGAGCCTTTTCTGAGATGAGCTTTTTCA
1 AGATAGAATTTTAAAGTTGTTGAGCCTCTTCTGAGAAGAGCTTTTT-A
* * * * *
7632863 AGACGAGAATTTTTAAAGTTGTTGAG-CTTTTATAGAGAGGAGCTTTTCA
1 AGA-TAGAA-TTTTAAAGTTGTTGAGCCTCTTCT-GAGAAGAGCTTTTTA
* * * *
7632912 AGATGGATTTTTAAAGTTGTTGAGCCTCTGCTGAAAAGAGCCTTTTTA
1 AGATAGAATTTTAAAGTTGTTGAGCCTCTTCTGAGAAGAG-CTTTTTA
* ** * *
7632960 AGATAGAATTTTAAAGTTGTTAAGCCTCGACTGAGATGAGCATTTT-
1 AGATAGAATTTTAAAGTTGTTGAGCCTCTTCTGAGAAGAGCTTTTTA
* * * * * *
7633006 AGTTAAGGATTTTTTAAAAGTTGTTGAG-CTTTTGCTAAGACGAGCTTTTTTC
1 AGAT-A-GA-ATTTT-AAAGTTGTTGAGCCTCTT-CTGAGAAGAGC-TTTTTA
** * *
7633058 AGAT-GAGA--TTAAAGTTG-TGAG-CTCGACTGA-AAG-GATTTTCA
1 AGATAGA-ATTTTAAAGTTGTTGAGCCTCTTCTGAGAAGAGCTTTTTA
* * * * *
7633099 AGATGAAGATTTTTTAAAAGTTGTTGAG-CT-TT-TTAGAGGAACTTTTTTC
1 AGAT--AGA-ATTTT-AAAGTTGTTGAGCCTCTTCTGAGAAGAGC-TTTTTA
* * * * *
7633148 AGATGAGATTTTTAAAGTTATTGAG-CT-TTGCTTAGAGGAGCTTTTTG
1 AGAT-AGAATTTTAAAGTTGTTGAGCCTCTT-CTGAGAAGAGCTTTTTA
* *
7633195 AGATGAAGATTTTTAAAGTTGTTGAGCCTCTGT-TTAGAA-A-CTTTTTTCA
1 AGAT--AGAATTTTAAAGTTGTTGAGCCTCT-TCTGAGAAGAGC-TTTTT-A
* * *
7633244 AGATGAGAATTTTTAAAGTTGTTGAGCAT-TGCT-AGAGGAGCTTTTTCCA
1 AGAT-AGAA-TTTTAAAGTTGTTGAGCCTCTTCTGAGAAGAGCTTTTT--A
* * *
7633293 A-AT-GAGATTTTCAAAGTTGTTGAG-CT-TTACTTAGAGGA-ATTTTTCA
1 AGATAGA-ATTTT-AAAGTTGTTGAGCCTCTT-CTGAGAAGAGCTTTTT-A
* ** *
7633339 AGATGAGGATTTTTAAAGTTGTTGAGCCTCTGTAAGAGAGGAGCTTTTTTTCA
1 AGAT-A-GAATTTTAAAGTTGTTGAGCCTCT-TCTGAGAAGAGC--TTTTT-A
** * * * *
7633392 A-ATA-AGATTTTAAAGTCATTGAGCCTCTGCTTAGAGGAACTTTTTCA
1 AGATAGA-ATTTTAAAGTTGTTGAGCCTCTTCTGAGAAGAGCTTTTT-A
* *
7633439 AGATAAAATTTTAAAGTTGTTGAGCCT-TTGCCGAGAAGAG
1 AGATAGAATTTTAAAGTTGTTGAGCCTCTT-CTGAGAAGAG
7633479 TCTCTTTCAG
Statistics
Matches: 476, Mismatches: 87, Indels: 106
0.71 0.13 0.16
Matches are distributed among these distances:
41 8 0.02
42 1 0.00
43 2 0.00
44 5 0.01
45 6 0.01
46 40 0.08
47 88 0.18
48 151 0.32
49 78 0.16
50 77 0.16
51 7 0.01
52 5 0.01
53 8 0.02
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (47 bp):
AGATAGAATTTTAAAGTTGTTGAGCCTCTTCTGAGAAGAGCTTTTTA
Found at i:7633288 original size:144 final size:140
Alignment explanation
Indices: 7632815--7633469 Score: 480
Period size: 144 Copynumber: 4.5 Consensus size: 140
7632805 TTTTGAGAAC
* * *
7632815 AGATAGAATTTTAAAGTTGTTGAGCCTTTTCTGAGATGAGCTTTTTCAAGACGAGAATTTTTAAA
1 AGATAGAATTTTAAAGTTGTTGAG-C-TTGCTGAGAGGAGCTTTTTC-AGATGAG-ATTTTTAAA
** * * *
7632880 GTTGTTGAGCTTTTATAGAGAGGAGCTTTTCAAGATG-GATTTTTAAAGTTGTTGAGCCTCTGCT
62 GTTGTTGAGCTTTGCT-TAGAGGAGCTTTTTAAGATGAGATTTTTAAAGTTGTTGAGCCTCTGTT
* *
7632944 GAAAAGAGCCTTTTT-A
126 TAGAA-A-CCTTTTTCA
* * * * * *
7632960 AGATAGAATTTTAAAGTTGTTAAGCCTCGACTGAGATGAGCATTTT-AGTTAAGGATTTTTTAAA
1 AGATAGAATTTTAAAGTTGTTGAG-CTTG-CTGAGAGGAGCTTTTTCAGATGA-GA-TTTTT-AA
* * *
7633024 AGTTGTTGAGCTTTTGCTAAGACGAGCTTTTTTCAGATGAGA---TTAAAGTTG-TGAG-CTC-G
61 AGTTGTTGAGC-TTTGCTTAGAGGAGC-TTTTTAAGATGAGATTTTTAAAGTTGTTGAGCCTCTG
** ***
7633083 ACT-GAAAGGATTTTCA
124 TTTAGAAACCTTTTTCA
* * * *
7633099 AGATGAAGATTTTTTAAAAGTTGTTGAGCTT-TTTAGAGGAACTTTTTTCAGATGAGATTTTTAA
1 AGAT--AGA-ATTTT-AAAGTTGTTGAGCTTGCTGAGAGGAGC-TTTTTCAGATGAGATTTTTAA
* *
7633163 AGTTATTGAGCTTTGCTTAGAGGAGCTTTTTGAGATGAAGATTTTTAAAGTTGTTGAGCCTCTGT
61 AGTTGTTGAGCTTTGCTTAGAGGAGCTTTTTAAGATG-AGATTTTTAAAGTTGTTGAGCCTCTGT
*
7633228 TTAGAAACTTTTTTCA
125 TTAGAAACCTTTTTCA
* *
7633244 AGATGAGAATTTTTAAAGTTGTTGAGCATTGCT-AGAGGAGCTTTTTCCAAATGAGATTTTCAAA
1 AGAT-AGAA-TTTTAAAGTTGTTGAGC-TTGCTGAGAGGAGCTTTTT-CAGATGAGATTTTTAAA
* *
7633308 GTTGTTGAGCTTTACTTAGAGGA-ATTTTTCAAGATGAGGATTTTTAAAGTTGTTGAGCCTCTG-
62 GTTGTTGAGCTTTGCTTAGAGGAGCTTTTT-AAGATGA-GATTTTTAAAGTTGTTGAGCCTCTGT
* *
7633371 TAAGAGAGGAGCTTTTTTTCA
125 TTAGA-A--A-C-CTTTTTCA
** * * * *
7633392 A-ATA-AGATTTTAAAGTCATTGAGCCTCTGCTTAGAGGAACTTTTTCAAGAT-AAAATTTTAAA
1 AGATAGA-ATTTTAAAGTTGTTGAG-CT-TGCTGAGAGGAGCTTTTTC-AGATGAGATTTTTAAA
7633454 GTTGTTGAGCCTTTGC
62 GTTGTTGAG-CTTTGC
7633470 CGAGAAGAGT
Statistics
Matches: 413, Mismatches: 58, Indels: 76
0.76 0.11 0.14
Matches are distributed among these distances:
137 10 0.02
138 20 0.05
139 18 0.04
140 14 0.03
141 19 0.05
142 17 0.04
143 50 0.12
144 101 0.24
145 91 0.22
146 39 0.09
147 25 0.06
148 9 0.02
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (140 bp):
AGATAGAATTTTAAAGTTGTTGAGCTTGCTGAGAGGAGCTTTTTCAGATGAGATTTTTAAAGTTG
TTGAGCTTTGCTTAGAGGAGCTTTTTAAGATGAGATTTTTAAAGTTGTTGAGCCTCTGTTTAGAA
ACCTTTTTCA
Found at i:7633435 original size:49 final size:49
Alignment explanation
Indices: 7633093--7633465 Score: 310
Period size: 48 Copynumber: 7.7 Consensus size: 49
7633083 ACTGAAAGGA
*
7633093 TTTTCAAGATGAAGATTTTTTAAAAGTTGTTGAG-CT-T-TTTAGAGGAACTT
1 TTTTCAA-AT-AAGA-TTTTT-AAAGTTGTTGAGCCTCTGCTTAGAGGAACTT
* * * * *
7633143 TTTTCAGATGAGATTTTTAAAGTTATTGAG-CTTTGCTTAGAGGAGC-T
1 TTTTCAAATAAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAACTT
* * *
7633190 TTTTGAGATGAAGATTTTTAAAGTTGTTGAGCCTCTGTTTAGA--AACTT
1 TTTTCAAAT-AAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAACTT
* * *
7633238 TTTTCAAGATGAGAATTTTTAAAGTTGTTGAGCAT-TGC-TAGAGGAGCTT
1 TTTTCAA-ATAAG-ATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAACTT
* * * * *
7633287 TTTCCAAATGAGATTTTCAAAGTTGTTGAG-CTTTACTTAGAGGAA--T
1 TTTTCAAATAAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAACTT
* * *
7633333 TTTTCAAGATGAGGATTTTTAAAGTTGTTGAGCCTCTG-TAAGAGAGGAGCTTT
1 TTTTCAA-AT-AAGATTTTTAAAGTTGTTGAGCCTCTGCT--TAGAGGAAC-TT
**
7633386 TTTTCAAATAAGA-TTTTAAAGTCATTGAGCCTCTGCTTAGAGGAAC-T
1 TTTTCAAATAAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAACTT
*
7633433 TTTTCAAGATAA-AATTTTAAAGTTGTTGAGCCT
1 TTTTCAA-ATAAGATTTTTAAAGTTGTTGAGCCT
7633466 TTGCCGAGAA
Statistics
Matches: 264, Mismatches: 37, Indels: 46
0.76 0.11 0.13
Matches are distributed among these distances:
46 21 0.08
47 51 0.19
48 93 0.35
49 53 0.20
50 32 0.12
51 4 0.02
52 2 0.01
53 8 0.03
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (49 bp):
TTTTCAAATAAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAACTT
Found at i:7633454 original size:98 final size:96
Alignment explanation
Indices: 7632822--7633466 Score: 418
Period size: 95 Copynumber: 6.7 Consensus size: 96
7632812 AACAGATAGA
* * * * * *
7632822 ATTTTAAAGTTGTTGAGCCTTTTCTGAGATGAGCTTTTTCAAGACGAGAATTTTTAAAGTTGTTG
1 ATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAACTTTTTCAAGATGAGAATTTTTAAAGTTGTTG
* ** *
7632887 AGCTTTTATAGAGAGGAGC-TTTT-CAAGAT-GG
66 AGCCTTGCT--AGAGGAGCTTTTTCCAA-ATAAG
* * * *
7632918 ATTTTTAAAGTTGTTGAGCCTCTGCTGAAAAGAGCCTTTTT-AAGAT-AGAA-TTTTAAAGTTGT
1 A-TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGA-ACTTTTTCAAGATGAGAATTTTTAAAGTTGT
* * * * **
7632980 TAAGCCTCGACTGAGATGAGCATTTT--AGTTAAGG
64 TGAGCCTTG-CT-AGAGGAGCTTTTTCCAAATAA-G
* * * * *
7633014 ATTTTTTAAAAGTTGTTGAGCTTTTGCTAAGACGAGCTTTTTTC-AGATGAG-A---TTAAAGTT
1 A--TTTT-AAAGTTGTTGAGCCTCTGCTTAGAGGAAC-TTTTTCAAGATGAGAATTTTTAAAGTT
* *
7633074 G-TGAG-CTCGACTGAAAGGA---TTTT-CAAGATGAAG
62 GTTGAGCCTTG-CT-AGAGGAGCTTTTTCCAA-AT-AAG
*
7633107 ATTTTTTAAAAGTTGTTGAG-CT-T-TTTAGAGGAACTTTTTTC-AGATGAG-ATTTTTAAAGTT
1 A--TTTT-AAAGTTGTTGAGCCTCTGCTTAGAGGAAC-TTTTTCAAGATGAGAATTTTTAAAGTT
* * * *
7633167 ATTGAGCTTTGCTTAGAGGAGCTTTTT-GAGATGAAG
62 GTTGAGCCTTGC-TAGAGGAGCTTTTTCCAAAT-AAG
*
7633203 ATTTTTAAAGTTGTTGAGCCTCTGTTTAGA--AACTTTTTTCAAGATGAGAATTTTTAAAGTTGT
1 A-TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAAC-TTTTTCAAGATGAGAATTTTTAAAGTTGT
* *
7633266 TGAGCATTGCTAGAGGAGCTTTTTCCAAATGAG
64 TGAGCCTTGCTAGAGGAGCTTTTTCCAAATAAG
* * *
7633299 ATTTTCAAAGTTGTTGAG-CTTTACTTAGAGGAA-TTTTTCAAGATGAGGATTTTTAAAGTTGTT
1 ATTTT-AAAGTTGTTGAGCCTCTGCTTAGAGGAACTTTTTCAAGATGAGAATTTTTAAAGTTGTT
*
7633362 GAGCCTCTG-TAAGAGAGGAGCTTTTTTTCAAATAAG
65 GAGCCT-TGCT---AGAGGAGC-TTTTTCCAAATAAG
** *
7633398 ATTTTAAAGTCATTGAGCCTCTGCTTAGAGGAACTTTTTCAAGAT-A-AAATTTTAAAGTTGTTG
1 ATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAACTTTTTCAAGATGAGAATTTTTAAAGTTGTTG
7633461 AGCCTT
66 AGCCTT
7633467 TGCCGAGAAG
Statistics
Matches: 455, Mismatches: 55, Indels: 77
0.78 0.09 0.13
Matches are distributed among these distances:
90 22 0.05
91 5 0.01
92 2 0.00
93 30 0.07
94 37 0.08
95 96 0.21
96 67 0.15
97 76 0.17
98 76 0.17
99 33 0.07
100 11 0.02
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (96 bp):
ATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAACTTTTTCAAGATGAGAATTTTTAAAGTTGTTG
AGCCTTGCTAGAGGAGCTTTTTCCAAATAAG
Found at i:7633777 original size:28 final size:28
Alignment explanation
Indices: 7633744--7633816 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
7633734 GCCGATATCC
7633744 GATTTCAATTCAACTGGGCTTCAGGCCTT
1 GATTTCAATTCAACTGGGCTTCAGG-CTT
* *
7633773 -ATTTCAATTTAATTGGGCTTCAGGCTT
1 GATTTCAATTCAACTGGGCTTCAGGCTT
*
7633800 GATTTCAATTCCACTGG
1 GATTTCAATTCAACTGG
7633817 CCCTAAAGTC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
27 3 0.08
28 35 0.92
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (28 bp):
GATTTCAATTCAACTGGGCTTCAGGCTT
Found at i:7633914 original size:7 final size:7
Alignment explanation
Indices: 7633913--7633987 Score: 69
Period size: 7 Copynumber: 9.6 Consensus size: 7
7633903 AAAAATACAA
7633913 AAAATAC
1 AAAATAC
*
7633920 AAAAATAT
1 -AAAATAC
7633928 AAAATACC
1 AAAATA-C
7633936 AAAAAATAC
1 --AAAATAC
7633945 AAAATAC
1 AAAATAC
7633952 AAAATACC
1 AAAATA-C
7633960 AAAAAATAC
1 --AAAATAC
7633969 AAAAATAC
1 -AAAATAC
7633977 AAAATAC
1 AAAATAC
7633984 AAAA
1 AAAA
7633988 AAAATAAAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 13
0.80 0.03 0.18
Matches are distributed among these distances:
7 30 0.51
8 15 0.25
9 2 0.03
10 12 0.20
ACGTcount: A:0.73, C:0.13, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAATAC
Found at i:7633925 original size:17 final size:16
Alignment explanation
Indices: 7633903--7633988 Score: 90
Period size: 17 Copynumber: 5.3 Consensus size: 16
7633893 TTATTAAATT
7633903 AAAAATACAAAAAATAC
1 AAAAATAC-AAAAATAC
*
7633920 AAAAATA-TAAAATACC
1 AAAAATACAAAAATA-C
7633936 AAAAAATAC-AAAATAC
1 -AAAAATACAAAAATAC
7633952 -AAAATACCAAAAAATAC
1 AAAAATA-C-AAAAATAC
7633969 AAAAATAC-AAAATAC
1 AAAAATACAAAAATAC
7633984 AAAAA
1 AAAAA
7633989 AAATAAAAAA
Statistics
Matches: 61, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
14 6 0.10
15 19 0.31
16 2 0.03
17 28 0.46
18 6 0.10
ACGTcount: A:0.74, C:0.13, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAAATACAAAAATAC
Found at i:7633938 original size:25 final size:25
Alignment explanation
Indices: 7633904--7634003 Score: 145
Period size: 24 Copynumber: 4.2 Consensus size: 25
7633894 TATTAAATTA
*
7633904 AAAATA-CAAAAAATACAAAAATAT
1 AAAATACCAAAAAATACAAAAATAC
7633928 AAAATACCAAAAAATAC-AAAATAC
1 AAAATACCAAAAAATACAAAAATAC
7633952 AAAATACCAAAAAATACAAAAATAC
1 AAAATACCAAAAAATACAAAAATAC
* *
7633977 AAAATA-CAAAAAAAATAAAAA-AC
1 AAAATACCAAAAAATACAAAAATAC
7634000 AAAA
1 AAAA
7634004 AAGGGGAGAT
Statistics
Matches: 71, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
23 6 0.08
24 42 0.59
25 23 0.32
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (25 bp):
AAAATACCAAAAAATACAAAAATAC
Found at i:7634005 original size:25 final size:25
Alignment explanation
Indices: 7633898--7634005 Score: 132
Period size: 25 Copynumber: 4.4 Consensus size: 25
7633888 TTGTTTTATT
*
7633898 AAATTAAAAATA-CAAAAAATACAA
1 AAATAAAAAATACCAAAAAATACAA
*
7633922 AAATATAAAATACCAAAAAATAC-A
1 AAATAAAAAATACCAAAAAATACAA
*
7633946 AAATACAAAATACCAAAAAATACAA
1 AAATAAAAAATACCAAAAAATACAA
* *
7633971 AAATACAAAATACAAAAAAAATA-AA
1 AAATAAAAAATAC-CAAAAAATACAA
*
7633996 AAACAAAAAA
1 AAATAAAAAA
7634006 GGGGAGATGG
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
24 33 0.44
25 34 0.45
26 8 0.11
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.13
Consensus pattern (25 bp):
AAATAAAAAATACCAAAAAATACAA
Found at i:7635710 original size:49 final size:49
Alignment explanation
Indices: 7635426--7636253 Score: 714
Period size: 49 Copynumber: 17.0 Consensus size: 49
7635416 TTTTGAGAAC
* * *
7635426 AGAT-AGAATTTTAAAGTTGTTGAGCCTTTTCTGAGAGGAGC-TTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* *
7635473 AGATG-GATTTTTAAAATTGTTGAGCCTCTGTTGAGAGGAGC-TTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* *
7635520 AGAT-AGATTTTTAAAGTTGTTGAGCCTCTGCTAAAAGGAGCCTTTTT-A
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCA
* * * * *
7635568 AGA-CAGAATTTTAAAGTTGTTAAGCCTCTACTGAGATGAGCTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * * *
7635616 AGTTGAGGATTTTTTTTAAGTTGTTGAACTTCTGCTAAGAGGAGCTTTTTTCA
1 AGATGA-GA--TTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTCA
* * * *
7635669 A-ATGAGATTTTTAAAGTTGCTGAGCCTTTGCTGAAATGAGCTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * *
7635717 AGATGAAGATTTTTAAAGTTGTTGAGCCTCTGATTAGAGAAACTTTTTTC-
1 AGATG-AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTCA
* * * * *
7635767 AGATGAGATTTTTAAAGTTATTGAACATCTGCTTAGAGGAGC-TTTTCT
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * **
7635815 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGTTTAGATAAGCTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* *
7635864 AGATGAGAATTTTTAAAGTTGTTAAGCCTCTGCTAAGAGGAGCTTTTTCA
1 AGATGAG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * * *
7635914 AAATGAGATTTTTAAAGTTGTTGAGCCTCTACTTAAAGGAACTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
*
7635963 AGATGAGGATTTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTTTCA
1 AGATGA-GATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTCA
* * * * * *
7636014 A-ATAAGATTTTTAAA-TTCATTGAGCCTCTACTTAGATGAACTTTTTCA
1 AGATGAGATTTTTAAAGTT-GTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
** * *
7636062 AGAT-A-AAATTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGTCTCTTTC-
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCA
* * *
7636109 -----AGA-TTTTAAAGTTGTTGAGCCTTTGCCGAGAGGAGTCTCTTTC-
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCA
* * * * * *
7636152 AGATTTTAAATTTTTAAAGTTGTTGAGCCTTTGCCGAGAGAAGTCTCTTTCA
1 AGA--TGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCA
* * * *
7636204 A-ATTTTAAATTTTTAAAAGTTGTCGAGCCTCAAG-TGAGAGGAGCATTTTT
1 AGA--TGAGATTTTT-AAAGTTGTTGAGCCTC-TGCTGAGAGGAGC-TTTTT
7636254 GATTTGACGA
Statistics
Matches: 647, Mismatches: 98, Indels: 67
0.80 0.12 0.08
Matches are distributed among these distances:
43 39 0.06
44 1 0.00
47 110 0.17
48 101 0.16
49 148 0.23
50 115 0.18
51 69 0.11
52 55 0.09
53 9 0.01
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (49 bp):
AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
Found at i:7635782 original size:99 final size:98
Alignment explanation
Indices: 7635426--7636109 Score: 682
Period size: 99 Copynumber: 7.0 Consensus size: 98
7635416 TTTTGAGAAC
* * ** * *
7635426 AGAT-AGAATTTTAAAGTTGTTGAGCCTTTTCTGAGAGGAGC-TTTTCAAGATG-GATTTTTAAA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGATTAGAGGAACTTTTTCAAGATGAGATTTTTAAA
* *
7635488 ATTGTTGAGCCTCTGTTGAGAGGAGC-TTTTCA
66 GTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * * * *
7635520 AGAT-AGATTTTTAAAGTTGTTGAGCCTCTGCTAAAAGGAGCCTTTTT-AAGA-CAGAATTTTAA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGATTAGAGGA-ACTTTTTCAAGATGAGATTTTTAA
* * *
7635582 AGTTGTTAAGCCTCTACTGAGATGAGCTTTTTCA
65 AGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * * * * *
7635616 AGTTGAGGATTTTTTTTAAGTTGTTGAACTTCTGCTAAGAGGAGCTTTTTTCAA-ATGAGATTTT
1 AGATGA-GA--TTTTTAAAGTTGTTGAGCCTCTGATTAGAGGAAC-TTTTTCAAGATGAGATTTT
* * * *
7635680 TAAAGTTGCTGAGCCTTTGCTGAAATGAGCTTTTTCA
62 TAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
*
7635717 AGATGAAGATTTTTAAAGTTGTTGAGCCTCTGATTAGAGAAACTTTTTTC-AGATGAGATTTTTA
1 AGATG-AGATTTTTAAAGTTGTTGAGCCTCTGATTAGAGGAAC-TTTTTCAAGATGAGATTTTTA
* * * * *
7635781 AAGTTATTGAACATCTGCTTAGAGGAGC-TTTTCT
64 AAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* *
7635815 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGTTTAGA-TAAGCTTTTTCAAGATGAGAATTTTTA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGATTAGAGGAA-CTTTTTCAAGATGAG-ATTTTTA
* *
7635879 AAGTTGTTAAGCCTCTGCTAAGAGGAGCTTTTTCA
64 AAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* *
7635914 AAATGAGATTTTTAAAGTTGTTGAGCCTCT-ACTTAAAGGAACTTTTTCAAGATGAGGATTTTTA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGA-TTAGAGGAACTTTTTCAAGATGA-GATTTTTA
*
7635978 AAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTTTCA
64 AAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTCA
* * * **
7636014 A-ATAAGATTTTTAAA-TTCATTGAGCCTCT-ACTTAGATGAACTTTTTCAAGAT-A-AAATTTA
1 AGATGAGATTTTTAAAGTT-GTTGAGCCTCTGA-TTAGAGGAACTTTTTCAAGATGAGATTTTTA
* *
7636074 AAGTTGTTGAGCCTTTGCTGAGAGGAGTCTCTTTCA
64 AAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCA
7636110 GATTTTAAAG
Statistics
Matches: 500, Mismatches: 67, Indels: 44
0.82 0.11 0.07
Matches are distributed among these distances:
94 34 0.07
95 35 0.07
96 57 0.11
97 41 0.08
98 46 0.09
99 195 0.39
100 45 0.09
101 46 0.09
102 1 0.00
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (98 bp):
AGATGAGATTTTTAAAGTTGTTGAGCCTCTGATTAGAGGAACTTTTTCAAGATGAGATTTTTAAA
GTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
Found at i:7635905 original size:246 final size:245
Alignment explanation
Indices: 7635434--7636096 Score: 810
Period size: 246 Copynumber: 2.7 Consensus size: 245
7635424 ACAGATAGAA
* * *
7635434 TTTTAAAGTTGTTGAGCCTTTTCTGAGAGGAGC-TTTTCAAGATG-GATTTTTAAAATTGTTGAG
1 TTTTAAAGTTGTTGAGCCTTTACTGAAAGGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTTGAG
* * *
7635497 CCTCTGTTGAGAGGAGC--TTTTCAAGATAGATTTTTAAAGTTGTTGAGCCTCTGCTAAAAGGAG
66 CCTCTGTTGAGAGGAGCTTTTTTC-AGATAGATTTTTAAAGTTATTGAGCCTCTGCTTAGAGGAG
* * * *
7635560 CCTTTT-TAAGACAGAATTTTAAAGTTGTTAAGCCTCTACTGAGATGAGCTTTTTCAAGTTGAGG
130 -CTTTTCT-AGATAGAATTTTAAAGTTGTTGAGCCTCTACTGAGATAAGCTTTTTCAAGATGAGG
* * *
7635624 ATTTTTTTTAAGTTGTTGAACTTCTGCTAAGAGGAGCTTTTTTC-AAATGAGAT
193 ATATTTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGC-TTTTTCAAAATGAGAT
* * *
7635677 TTTTAAAGTTGCTGAGCCTTTGCTGAAATGAGCTTTTTCAAGATGAAGATTTTTAAAGTTGTTGA
1 TTTTAAAGTTGTTGAGCCTTTACTGAAAGGAGCTTTTTCAAGATG-AGATTTTTAAAGTTGTTGA
* * * *
7635742 GCCTCTGATT-AGAGAAACTTTTTTCAGATGAGATTTTTAAAGTTATTGAACATCTGCTTAGAGG
65 GCCTCTG-TTGAGAGGAGCTTTTTTCAGAT-AGATTTTTAAAGTTATTGAGCCTCTGCTTAGAGG
* ** *
7635806 AGCTTTTCTAGATGAGATTTTTAAAGTTGTTGAGCCTCTGTTTAGATAAGCTTTTTCAAGATGA-
128 AGCTTTTCTAGAT-AGAATTTTAAAGTTGTTGAGCCTCTACTGAGATAAGCTTTTTCAAGATGAG
7635870 GA-ATTTTTAAAGTTGTT-AAGCCTCTGCTAAGAGGAGCTTTTTCAAAATGAGAT
192 GATATTTTTAAAGTTGTTGAA-CCTCTGCTAAGAGGAGCTTTTTCAAAATGAGAT
* * *
7635923 TTTTAAAGTTGTTGAGCCTCTACTTAAAGGAACTTTTTCAAGATGAGGATTTTTAAAGTTGTTGA
1 TTTTAAAGTTGTTGAGCCTTTACTGAAAGGAGCTTTTTCAAGATGA-GATTTTTAAAGTTGTTGA
* * *
7635988 GCCTCTGTTGAGAGGAGCTTTTTTCAAATAAGATTTTTAAA-TTCATTGAGCCTCTACTTAGATG
65 GCCTCTGTTGAGAGGAGCTTTTTTCAGAT-AGATTTTTAAAGTT-ATTGAGCCTCTGCTTAGAGG
* * * * *
7636052 AACTTTTTCAAGATA-AAATTTAAAGTTGTTGAGCCTTTGCTGAGA
128 AGC-TTTTCTAGATAGAATTTTAAAGTTGTTGAGCCTCTACTGAGA
7636097 GGAGTCTCTT
Statistics
Matches: 361, Mismatches: 44, Indels: 28
0.83 0.10 0.06
Matches are distributed among these distances:
243 29 0.08
244 11 0.03
245 38 0.11
246 178 0.49
247 25 0.07
248 80 0.22
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (245 bp):
TTTTAAAGTTGTTGAGCCTTTACTGAAAGGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTTGAG
CCTCTGTTGAGAGGAGCTTTTTTCAGATAGATTTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGC
TTTTCTAGATAGAATTTTAAAGTTGTTGAGCCTCTACTGAGATAAGCTTTTTCAAGATGAGGATA
TTTTTAAAGTTGTTGAACCTCTGCTAAGAGGAGCTTTTTCAAAATGAGAT
Found at i:7636131 original size:43 final size:43
Alignment explanation
Indices: 7636070--7636212 Score: 187
Period size: 43 Copynumber: 3.1 Consensus size: 43
7636060 CAAGATAAAA
*
7636070 TTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGTCTCTTTCAGAT
1 TTTAAAGTTGTTGAGCCTTTGCCGAGAGGAGTCTCTTTCAGAT
7636113 TTTAAAGTTGTTGAGCCTTTGCCGAGAGGAGTCTCTTTCAGATTTTAAATT
1 TTTAAAGTTGTTGAGCCTTTGCCGAGAGGAGTCTCTTTCAG-------A-T
* *
7636164 TTTAAAGTTGTTGAGCCTTTGCCGAGAGAAGTCTCTTTCAAAT
1 TTTAAAGTTGTTGAGCCTTTGCCGAGAGGAGTCTCTTTCAGAT
7636207 TTTAAA
1 TTTAAA
7636213 TTTTTAAAAG
Statistics
Matches: 89, Mismatches: 3, Indels: 16
0.82 0.03 0.15
Matches are distributed among these distances:
43 47 0.53
44 1 0.01
50 1 0.01
51 40 0.45
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (43 bp):
TTTAAAGTTGTTGAGCCTTTGCCGAGAGGAGTCTCTTTCAGAT
Found at i:7636186 original size:51 final size:51
Alignment explanation
Indices: 7636112--7636233 Score: 208
Period size: 51 Copynumber: 2.4 Consensus size: 51
7636102 CTCTTTCAGA
* *
7636112 TTTTAAAGTTGTTGAGCCTTTGCCGAGAGGAGTCTCTTTCAGATTTTAAAT
1 TTTTAAAGTTGTTGAGCCTTTGCCGAGAGAAGTCTCTTTCAAATTTTAAAT
7636163 TTTTAAAGTTGTTGAGCCTTTGCCGAGAGAAGTCTCTTTCAAATTTTAAAT
1 TTTTAAAGTTGTTGAGCCTTTGCCGAGAGAAGTCTCTTTCAAATTTTAAAT
*
7636214 TTTTAAAAGTTGTCGAGCCT
1 TTTT-AAAGTTGTTGAGCCT
7636234 CAAGTGAGAG
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
51 53 0.79
52 14 0.21
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (51 bp):
TTTTAAAGTTGTTGAGCCTTTGCCGAGAGAAGTCTCTTTCAAATTTTAAAT
Found at i:7636515 original size:28 final size:28
Alignment explanation
Indices: 7636457--7636518 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
7636447 GTCGATATCC
* **
7636457 GATTTCAATTCAACTGGGCTTCAGGCTT
1 GATTTCAATTCAACTGGCCTAAAGGCTT
*
7636485 GATTTCAATTCAACTGGCCCTAAAGTC-T
1 GATTTCAATTCAACTGG-CCTAAAGGCTT
7636513 GATTTC
1 GATTTC
7636519 GATTGAGCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 24 0.83
29 5 0.17
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (28 bp):
GATTTCAATTCAACTGGCCTAAAGGCTT
Found at i:7636625 original size:8 final size:8
Alignment explanation
Indices: 7636583--7636694 Score: 85
Period size: 8 Copynumber: 14.4 Consensus size: 8
7636573 TTGTTTTATT
7636583 AAAT-TAA
1 AAATATAA
*
7636590 AAATA-CA
1 AAATATAA
*
7636597 AAATACAA
1 AAATATAA
*
7636605 AATATACAA
1 AA-ATATAA
7636614 AAATATAA
1 AAATATAA
7636622 AAATATAA
1 AAATATAA
7636630 AAATATAA
1 AAATATAA
*
7636638 AAATA-CA
1 AAATATAA
7636645 AAATAT-A
1 AAATATAA
*
7636652 AAATACCAA
1 AAATA-TAA
7636661 AAA-ATACA
1 AAATATA-A
7636669 AAA-ATACA
1 AAATATA-A
*
7636677 AAATAAAA
1 AAATATAA
7636685 AAAT-TAA
1 AAATATAA
7636692 AAA
1 AAA
7636695 ACAAAAAAGG
Statistics
Matches: 89, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
7 28 0.31
8 47 0.53
9 14 0.16
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.19
Consensus pattern (8 bp):
AAATATAA
Found at i:7636644 original size:32 final size:31
Alignment explanation
Indices: 7636583--7636701 Score: 131
Period size: 32 Copynumber: 3.9 Consensus size: 31
7636573 TTGTTTTATT
*
7636583 AAAT-TAAAAATA-CAAAATACAAAATATACAA
1 AAATATAAAAATATAAAAATACAAAA-ATAC-A
*
7636614 AAATATAAAAATATAAAAATATAAAAATACA
1 AAATATAAAAATATAAAAATACAAAAATACA
*
7636645 AAATAT-AAAATACCAAAAAATACAAAAATACA
1 AAATATAAAAATA--TAAAAATACAAAAATACA
*
7636677 AAATAAAAAAAT-TAAAAA-ACAAAAA
1 AAATATAAAAATATAAAAATACAAAAA
7636702 AGGGGGGATG
Statistics
Matches: 77, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
29 7 0.09
30 11 0.14
31 11 0.14
32 33 0.43
33 15 0.19
ACGTcount: A:0.75, C:0.08, G:0.00, T:0.18
Consensus pattern (31 bp):
AAATATAAAAATATAAAAATACAAAAATACA
Found at i:7636664 original size:48 final size:47
Alignment explanation
Indices: 7636583--7636700 Score: 136
Period size: 48 Copynumber: 2.5 Consensus size: 47
7636573 TTGTTTTATT
* *
7636583 AAAT-TAAAAATACAAAATACAAAATATACAAAAATATAAAAATATAA
1 AAATATAAAAATACAAAATACAAAATACACAAAAATACAAAAATA-AA
* *
7636630 AAATATAAAAATACAAAATATAAAATAC-CAAAAAATACAAAAATACA
1 AAATATAAAAATACAAAATACAAAATACAC-AAAAATACAAAAATAAA
*
7636677 AAATAAAAAAATTA-AAAA-ACAAAA
1 AAATATAAAAA-TACAAAATACAAAA
7636701 AAGGGGGGAT
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
46 5 0.08
47 20 0.32
48 37 0.60
ACGTcount: A:0.75, C:0.08, G:0.00, T:0.18
Consensus pattern (47 bp):
AAATATAAAAATACAAAATACAAAATACACAAAAATACAAAAATAAA
Found at i:7636694 original size:15 final size:14
Alignment explanation
Indices: 7636588--7636694 Score: 63
Period size: 15 Copynumber: 6.8 Consensus size: 14
7636578 TTATTAAATT
7636588 AAAAATACAAAATACA
1 AAAAATA-AAAATA-A
*
7636604 AAATATACAAAAATATA
1 AAA-A-ATAAAAATA-A
*
7636621 AAAATATAAAAATAT
1 AAAA-ATAAAAATAA
7636636 AAAAATACAAAATATA
1 AAAAATA-AAAATA-A
*
7636652 AAATACCA-AAAAATAC
1 AAA-A--ATAAAAATAA
7636668 AAAAATACAAAATAA
1 AAAAATA-AAAATAA
7636683 AAAAATTAAAAA
1 AAAAA-TAAAAA
7636695 ACAAAAAAGG
Statistics
Matches: 74, Mismatches: 7, Indels: 21
0.73 0.07 0.21
Matches are distributed among these distances:
13 1 0.01
14 4 0.05
15 26 0.35
16 21 0.28
17 18 0.24
18 3 0.04
19 1 0.01
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (14 bp):
AAAAATAAAAATAA
Found at i:7638083 original size:18 final size:18
Alignment explanation
Indices: 7638044--7638086 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7638034 TGTTATAAAA
*
7638044 TAATAAATAAAAACTAAT
1 TAATAAATAAAAACTAAG
*
7638062 TAATAAATTAAAAA-TAGG
1 TAATAAA-TAAAAACTAAG
7638080 TAATAAA
1 TAATAAA
7638087 AAATGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (18 bp):
TAATAAATAAAAACTAAG
Found at i:7641407 original size:149 final size:153
Alignment explanation
Indices: 7641233--7641512 Score: 426
Period size: 149 Copynumber: 1.8 Consensus size: 153
7641223 AGTGAATGAT
*
7641233 ATAAATACCCTTATAAATTTTAAAAAATAAAAAATTTATCTTTAAAATTCTAGCAGTATTTATTT
1 ATAAATACCCTTATAAATTTTAAAAAATAAAAAATTTATATTTAAAATTCTAGCAGTATTTATTT
7641298 A-ATAA-AA-ATTATTTGTCATTAAATATATAG-CTTTTATT-AGTTAGTTATTTAAATTTAAAT
66 ATATAATAAGATTATTTGTCATTAAATATATAGTCTTTTATTCA-TTAGTTATTTAAATTTAAAT
7641358 CTAAAAGTGTTAAAAATGAGTAAC
130 CTAAAAGTGTTAAAAATGAGTAAC
* * * *
7641382 ATAAATACCCTTATAAATTTTAAAAAATAACAAATTTATATTTCAATTTCTAGCATTATTTATTT
1 ATAAATACCCTTATAAATTTTAAAAAATAAAAAATTTATATTTAAAATTCTAGCAGTATTTATTT
* * * *
7641447 ATCTAATAATGATTATTTGTCATTACATATATAGTTTTTTATTCATTTGTTATTTAAATTTAAAT
66 ATATAATAA-GATTATTTGTCATTAAATATATAGTCTTTTATTCATTAGTTATTTAAATTTAAAT
7641512 C
130 C
7641513 AATTAAAAAT
Statistics
Matches: 116, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
149 61 0.53
150 3 0.03
151 2 0.02
153 22 0.19
154 27 0.23
155 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (153 bp):
ATAAATACCCTTATAAATTTTAAAAAATAAAAAATTTATATTTAAAATTCTAGCAGTATTTATTT
ATATAATAAGATTATTTGTCATTAAATATATAGTCTTTTATTCATTAGTTATTTAAATTTAAATC
TAAAAGTGTTAAAAATGAGTAAC
Found at i:7642007 original size:23 final size:24
Alignment explanation
Indices: 7641960--7642011 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
7641950 AATTTAGATT
*
7641960 AATTA-AAATTAAAGTTCATACAA
1 AATTATAAATTAAAGTTCATAAAA
7641983 AATTATAAATTAAA-TT-ATCAAAA
1 AATTATAAATTAAAGTTCAT-AAAA
7642006 AATTAT
1 AATTAT
7642012 TCAAAAAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 2 0.08
23 16 0.62
24 8 0.31
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.35
Consensus pattern (24 bp):
AATTATAAATTAAAGTTCATAAAA
Found at i:7644109 original size:22 final size:22
Alignment explanation
Indices: 7644084--7644166 Score: 80
Period size: 22 Copynumber: 3.8 Consensus size: 22
7644074 AATTTAGACA
7644084 AAATCAATAATAACTTTATATT
1 AAATCAATAATAACTTTATATT
* *
7644106 AAATCAATTATAACTGTATATT
1 AAATCAATAATAACTTTATATT
* * * *
7644128 AAAT-TATGGATAACTTAATAGT
1 AAATCAAT-AATAACTTTATATT
*
7644150 AAATAAATAATAA-TTTA
1 AAATCAATAATAACTTTA
7644167 GTAGTAAAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
21 5 0.10
22 42 0.86
23 2 0.04
ACGTcount: A:0.51, C:0.06, G:0.05, T:0.39
Consensus pattern (22 bp):
AAATCAATAATAACTTTATATT
Found at i:7644171 original size:22 final size:21
Alignment explanation
Indices: 7644137--7644178 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
7644127 TAAATTATGG
7644137 ATAACTTAATAGTAAATAAATA
1 ATAACTTAATAGTAAA-AAATA
* *
7644159 ATAATTTAGTAGTAAAAAAT
1 ATAACTTAATAGTAAAAAAT
7644179 TGATAAGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (21 bp):
ATAACTTAATAGTAAAAAATA
Found at i:7644184 original size:22 final size:22
Alignment explanation
Indices: 7644084--7644184 Score: 55
Period size: 22 Copynumber: 4.6 Consensus size: 22
7644074 AATTTAGACA
* * * *
7644084 AAATCAATAATAACTTTATATT
1 AAATAAATGATAACTTAATAGT
* * *
7644106 AAATCAATTATAACTGT-ATATT
1 AAATAAATGATAACT-TAATAGT
*
7644128 AAAT-TATGGATAACTTAATAGT
1 AAATAAAT-GATAACTTAATAGT
* * *
7644150 AAATAAATAATAATTTAGTAGT
1 AAATAAATGATAACTTAATAGT
7644172 AAA-AAATTGATAA
1 AAATAAA-TGATAA
7644185 GATAGTTGTA
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
21 6 0.09
22 56 0.86
23 3 0.05
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (22 bp):
AAATAAATGATAACTTAATAGT
Found at i:7644342 original size:22 final size:22
Alignment explanation
Indices: 7644285--7644379 Score: 95
Period size: 22 Copynumber: 4.4 Consensus size: 22
7644275 AACAATATAG
* * *
7644285 TAGTAAATTAAGGATAATTTAA
1 TAGTAAATCAATGATAACTTAA
*
7644307 TA-AAAAT-AAGTGATAACTTAA
1 TAGTAAATCAA-TGATAACTTAA
*
7644328 TATTAAATCAATGATAACTTAA
1 TAGTAAATCAATGATAACTTAA
* * *
7644350 TAGTAAATTAATAATAATTTAA
1 TAGTAAATCAATGATAACTTAA
7644372 TAGTAAAT
1 TAGTAAAT
7644380 AAAATTCAGT
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
20 2 0.03
21 15 0.24
22 43 0.69
23 2 0.03
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (22 bp):
TAGTAAATCAATGATAACTTAA
Found at i:7644362 original size:11 final size:11
Alignment explanation
Indices: 7644324--7644379 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
7644314 AAGTGATAAC
*
7644324 TTAATATTAAA
1 TTAATAGTAAA
* *
7644335 TCAAT-GATAAC
1 TTAATAG-TAAA
7644346 TTAATAGTAAA
1 TTAATAGTAAA
* *
7644357 TTAATAATAAT
1 TTAATAGTAAA
7644368 TTAATAGTAAA
1 TTAATAGTAAA
7644379 T
1 T
7644380 AAAATTCAGT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
11 33 0.97
12 1 0.03
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (11 bp):
TTAATAGTAAA
Found at i:7645156 original size:2 final size:2
Alignment explanation
Indices: 7645149--7645188 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
7645139 CACCAAAAAT
*
7645149 GA GA GA GA GA GA GA GT GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7645189 ACTATAGGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.50, T:0.03
Consensus pattern (2 bp):
GA
Found at i:7649688 original size:55 final size:55
Alignment explanation
Indices: 7649573--7649877 Score: 319
Period size: 55 Copynumber: 5.4 Consensus size: 55
7649563 TTTATATAAA
* * ** * *
7649573 GAAAATTGATACTTTCAACTTTTCCTTAAA-GCATTTGGAAATTTTATTTTCAAAG
1 GAAAATTGATACTTTCAACTTTCCCTAAAATGTTTTTGAAAATTTTATTTT-TAAG
* *
7649628 G-AAATTGATACTTTCAACTTTCCCTAAAATGTTTTTGGAAGTTTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTCCCTAAAATGTTTTTGAAAATTTTATTTTTAAG
* * * * **
7649682 AAAAATTGATACTTTCAACTTTTCCTTAGA-GCATTTGAAAATTTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTCCCTAAAATGTTTTTGAAAATTTTATTTTTAAG
* * *
7649736 GAAAATTGATACTTTCAACTTTTTCCCAAGAATATATACATATTTTTTAAAATTTTATTTTCAAG
1 GAAAATTGATACTTTCAAC--TTTCCC-----TA-A-A-ATGTTTTTGAAAATTTTATTTTTAAG
* *
7649801 GGAAATTGATACTTTCAACTTTCCTTAAAATGTTTTTGAAAATTTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTCCCTAAAATGTTTTTGAAAATTTTATTTTTAAG
7649856 GAAAATTGATACTTTCAACTTT
1 GAAAATTGATACTTTCAACTTT
7649878 TCTCAAAAAA
Statistics
Matches: 208, Mismatches: 29, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
54 67 0.32
55 87 0.42
56 6 0.03
57 1 0.00
58 2 0.01
61 1 0.00
62 1 0.00
63 5 0.02
64 1 0.00
65 37 0.18
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.45
Consensus pattern (55 bp):
GAAAATTGATACTTTCAACTTTCCCTAAAATGTTTTTGAAAATTTTATTTTTAAG
Found at i:7649795 original size:65 final size:57
Alignment explanation
Indices: 7649775--7649921 Score: 158
Period size: 55 Copynumber: 2.6 Consensus size: 57
7649765 GAATATATAC
* * *
7649775 ATATTTTTTAAAATTTTATTTTCAAGGGAAATTGATACTTTCAAC--TTTCCTTAAA
1 ATATTTTTGAAAATTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTTCCTTAAA
* **
7649830 ATGTTTTTGAAAATTTTATTTTTAAGGAAAATTGATACTTTCAAC-TTTTCTCAAAAA
1 ATATTTTTGAAAATTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTTC-CTTAAA
*
7649887 ATATCTTTTTTGAAAATTTTTTATTTTAA-GAAAAT
1 ATA---TTTTTGAAAATTTTAT-TTTTAAGGAAAAT
7649922 CATAAAAAAA
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
55 41 0.53
56 4 0.05
57 6 0.08
60 21 0.27
61 6 0.08
ACGTcount: A:0.36, C:0.08, G:0.07, T:0.48
Consensus pattern (57 bp):
ATATTTTTGAAAATTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTTCCTTAAA
Found at i:7649890 original size:120 final size:119
Alignment explanation
Indices: 7649669--7649890 Score: 331
Period size: 120 Copynumber: 1.9 Consensus size: 119
7649659 TTTTTGGAAG
* *
7649669 TTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTTAGAGCATTTGAAAATTTTATTTTTA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAGCATTTGAAAATTTTATTTTTA
* *
7649734 AGGAAAATTGATACTTTCAACTTTTTCCCAAGAATATATACATATTTTTTAAAA
66 AGGAAAATTGATACTTTCAACTTTTTCCAAAAAATATATACATATTTTTTAAAA
** **
7649788 TTTTATTTTCAAGGGAAATTGATACTTTCAAC-TTTCCTTAAAATGTTTTTGAAAATTTTATTTT
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTT-AAA-GCATTTGAAAATTTTATTTT
7649852 TAAGGAAAATTGATACTTTCAAC-TTTTCTCAAAAAATAT
64 TAAGGAAAATTGATACTTTCAACTTTTTC-CAAAAAATAT
7649891 CTTTTTTGAA
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
118 7 0.08
119 36 0.39
120 49 0.53
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (119 bp):
TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAGCATTTGAAAATTTTATTTTTA
AGGAAAATTGATACTTTCAACTTTTTCCAAAAAATATATACATATTTTTTAAAA
Done.