Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 39 of 147
Found at i:7836885 original size:22 final size:21
Alignment explanation
Indices: 7836857--7836905 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
7836847 CATGATTTAA
7836857 TTATGATATTGTTGC-ATGATAT
1 TTATGATATT-TT-CTATGATAT
7836879 TTATGAT-TTTTCTATGATAT
1 TTATGATATTTTCTATGATAT
7836899 TT-TGATA
1 TTATGATA
7836906 ATACCTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 5 0.20
20 11 0.44
21 2 0.08
22 7 0.28
ACGTcount: A:0.27, C:0.04, G:0.14, T:0.55
Consensus pattern (21 bp):
TTATGATATTTTCTATGATAT
Found at i:7842635 original size:25 final size:25
Alignment explanation
Indices: 7842607--7842656 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
7842597 ATAAGAGAGT
* * *
7842607 CTAATTATAATAATATTAATATTCA
1 CTAATAATAAAAACATTAATATTCA
7842632 CTAATAATAAAAACATTAATATTCA
1 CTAATAATAAAAACATTAATATTCA
7842657 AATATTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (25 bp):
CTAATAATAAAAACATTAATATTCA
Found at i:7842665 original size:23 final size:24
Alignment explanation
Indices: 7842621--7842667 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
7842611 TTATAATAAT
7842621 ATTAATATTCACTAATAATAAAAAC
1 ATTAATATTCAC-AATAATAAAAAC
*
7842646 ATTAATATTCA-AATATTAAAAA
1 ATTAATATTCACAATAATAAAAA
7842668 GATGAAGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.48
25 11 0.52
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (24 bp):
ATTAATATTCACAATAATAAAAAC
Found at i:7843246 original size:6 final size:6
Alignment explanation
Indices: 7843235--7843268 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
7843225 ACTAATCACA
*
7843235 AAAAAT AAAAAT AAAAAT GAAAAT AAAAA- AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
7843269 GAAAGAATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:7843259 original size:18 final size:16
Alignment explanation
Indices: 7843236--7843272 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 16
7843226 CTAATCACAA
7843236 AAAATAAAAATAAAAATG
1 AAAATAAAAA-AAAAA-G
7843254 AAAATAAAAAAAAAAG
1 AAAATAAAAAAAAAAG
7843270 AAA
1 AAA
7843273 GAATCTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.21
17 5 0.26
18 10 0.53
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (16 bp):
AAAATAAAAAAAAAAG
Found at i:7846334 original size:4 final size:4
Alignment explanation
Indices: 7846325--7846349 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7846315 TATTTTAGGA
7846325 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
7846350 TTGAAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:7846359 original size:31 final size:30
Alignment explanation
Indices: 7846303--7846360 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
7846293 TCCTTTTTTG
*
7846303 TATTTTTTATTATATTTTAGGATATTTATT
1 TATTTTTTATTATATTTTAGAATATTTATT
*
7846333 TATTTATTTATT-TATTTTTGAAATATTT
1 TATTT-TTTATTATATTTTAG-AATATTT
7846361 TTGCATGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 12 0.50
31 12 0.50
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (30 bp):
TATTTTTTATTATATTTTAGAATATTTATT
Found at i:7848994 original size:2 final size:2
Alignment explanation
Indices: 7848945--7848978 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
7848935 CATTAAGGAT
*
7848945 TA TA TA TA TA TA TA TA TA TA TA TA GTA TC TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA T
7848979 TTATTTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7851050 original size:23 final size:23
Alignment explanation
Indices: 7851015--7851069 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
7851005 AATCTTTATT
7851015 TAATTTT-ATATTTTGTA-TTTTAA
1 TAATTTTGA-ATTTTG-ACTTTTAA
* *
7851038 TCATTTTGAATTTTGACTTTTTA
1 TAATTTTGAATTTTGACTTTTAA
7851061 TAATTTTGA
1 TAATTTTGA
7851070 GTTGAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 1 0.04
23 25 0.93
24 1 0.04
ACGTcount: A:0.27, C:0.04, G:0.07, T:0.62
Consensus pattern (23 bp):
TAATTTTGAATTTTGACTTTTAA
Found at i:7851324 original size:49 final size:49
Alignment explanation
Indices: 7851271--7851370 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
7851261 TTATAAATGC
7851271 AATTTCACTTTAGAAATACTCTTAAAATTAATTAACTAATTCAACTACA
1 AATTTCACTTTAGAAATACTCTTAAAATTAATTAACTAATTCAACTACA
*
7851320 AATTTCACTTTAGAAATACTCTTAAAATTAATTAACTAATTCAACTGCA
1 AATTTCACTTTAGAAATACTCTTAAAATTAATTAACTAATTCAACTACA
7851369 AA
1 AA
7851371 GACAATAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.36
Consensus pattern (49 bp):
AATTTCACTTTAGAAATACTCTTAAAATTAATTAACTAATTCAACTACA
Found at i:7852235 original size:148 final size:146
Alignment explanation
Indices: 7852046--7852337 Score: 415
Period size: 148 Copynumber: 2.0 Consensus size: 146
7852036 CACTTACAAT
**
7852046 ATTCTTTACTCTTTACAAATAGGGAAGTTGATTGATATCAAAATATCAAAAAAGTTATTTTGAAT
1 ATTCTTTACTCTTTACAAATAAAGAAGTTGATTGATATCAAAATATCAAAAAAGTTATTTTGAAT
* * * **
7852111 GATGGTAATAAGAATAAAGCAATAATTAAAAATATACCATTTTTTCATTTAGTTGAAGAATTTTT
66 GATGGTAAAAAGAATAAAGCAATAATTAAAAATATA-C-TTTTTTCATTTAGTGGAAAAAAATTT
*
7852176 TTATGAAGAATGCGAACA
129 TTATAAAGAATGCGAACA
* * *
7852194 ATTCTTTACTTTTTTCAAATAAAGAAGTTGATTTG-TGTCAAAATATCAAAAAAGTTATTTTGAA
1 ATTCTTTACTCTTTACAAATAAAGAAGTTGA-TTGATATCAAAATATCAAAAAAGTTATTTTGAA
** * *
7852258 TGATGGTAAAAAGAATGCAGCAATGATTAAAAATATACTTTTTTTATTTAGTGGAAAAAAATTTT
65 TGATGGTAAAAAGAATAAAGCAATAATTAAAAATATACTTTTTTCATTTAGTGGAAAAAAATTTT
7852323 TATAAAGAATGCGAA
130 TATAAAGAATGCGAA
7852338 GGTGATTATC
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
146 36 0.28
147 1 0.01
148 88 0.69
149 3 0.02
ACGTcount: A:0.42, C:0.07, G:0.14, T:0.37
Consensus pattern (146 bp):
ATTCTTTACTCTTTACAAATAAAGAAGTTGATTGATATCAAAATATCAAAAAAGTTATTTTGAAT
GATGGTAAAAAGAATAAAGCAATAATTAAAAATATACTTTTTTCATTTAGTGGAAAAAAATTTTT
ATAAAGAATGCGAACA
Found at i:7853002 original size:22 final size:22
Alignment explanation
Indices: 7852942--7853005 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
7852932 TTAAAAATAT
7852942 AAATATAATTAGT-ATAACTTAG
1 AAATA-AATTAGTGATAACTTAG
* * * *
7852964 TAGT-AATCATTGATAACTTAG
1 AAATAAATTAGTGATAACTTAG
7852985 AAATAAATTAGTGATAACTTA
1 AAATAAATTAGTGATAACTTA
7853006 ATAGAAAATA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
20 5 0.16
21 11 0.34
22 16 0.50
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (22 bp):
AAATAAATTAGTGATAACTTAG
Found at i:7853014 original size:22 final size:22
Alignment explanation
Indices: 7852948--7853014 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
7852938 ATATAAATAT
* *
7852948 AATTAGT-ATAACTTAGTAG-T
1 AATTAGTGATAACTTAATAGAA
* *
7852968 AATCATTGATAACTTAGA-A-ATA
1 AATTAGTGATAACTTA-ATAGA-A
7852990 AATTAGTGATAACTTAATAGAA
1 AATTAGTGATAACTTAATAGAA
7853012 AAT
1 AAT
7853015 AAATAATAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 10
0.69 0.12 0.20
Matches are distributed among these distances:
20 5 0.14
21 10 0.29
22 19 0.54
23 1 0.03
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.34
Consensus pattern (22 bp):
AATTAGTGATAACTTAATAGAA
Found at i:7853023 original size:22 final size:22
Alignment explanation
Indices: 7852998--7853047 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
7852988 TAAATTAGTG
7852998 ATAACTTAATAGAAAATAAATA
1 ATAACTTAATAGAAAATAAATA
* * * *
7853020 ATAATTTAGTAGTAAATAATTA
1 ATAACTTAATAGAAAATAAATA
7853042 ATAACT
1 ATAACT
7853048 CTTTTACTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (22 bp):
ATAACTTAATAGAAAATAAATA
Found at i:7853147 original size:44 final size:44
Alignment explanation
Indices: 7853052--7853157 Score: 104
Period size: 44 Copynumber: 2.4 Consensus size: 44
7853042 ATAACTCTTT
* * * *
7853052 TACTAAATCAGTAATAATATAATAATATATGCATAATACCTTAA
1 TACTAAATCAATAATAATATAATAATAAATGCATAATAACATAA
** * * **
7853096 TGGTAAATCAATTATAATATAGTTGTAAATGCATAATAACATAA
1 TACTAAATCAATAATAATATAATAATAAATGCATAATAACATAA
* *
7853140 TACTAAATTAAGAATAAT
1 TACTAAATCAATAATAAT
7853158 TTAACAAAAA
Statistics
Matches: 47, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.34
Consensus pattern (44 bp):
TACTAAATCAATAATAATATAATAATAAATGCATAATAACATAA
Found at i:7853851 original size:32 final size:32
Alignment explanation
Indices: 7853815--7853892 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
7853805 TTTGCTGTTC
*
7853815 AATTTCCTTTTCCGATAGTGGCTCTTTGGTTG
1 AATTTCCTTTTCCGATAGTGGCTCTTCGGTTG
* * * *
7853847 AATTTCTTTTTCTGCTGGTGGCTCTTCGGTTG
1 AATTTCCTTTTCCGATAGTGGCTCTTCGGTTG
* *
7853879 GATTTCCTTCTCCG
1 AATTTCCTTTTCCG
7853893 TTCAATCTCC
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.09, C:0.22, G:0.22, T:0.47
Consensus pattern (32 bp):
AATTTCCTTTTCCGATAGTGGCTCTTCGGTTG
Found at i:7854588 original size:18 final size:17
Alignment explanation
Indices: 7854523--7854585 Score: 56
Period size: 16 Copynumber: 3.6 Consensus size: 17
7854513 AGATATTAGT
* *
7854523 TTAAAGATTATATATAA
1 TTAAAAATTATAAATAA
* *
7854540 -TAAAAATTTTAAATTA
1 TTAAAAATTATAAATAA
7854556 TTGATAAAATTAATAAATAA
1 TT-A-AAAATT-ATAAATAA
7854576 TTAAAAATTA
1 TTAAAAATTA
7854586 ATAGAAACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
16 12 0.33
17 2 0.06
18 7 0.19
19 7 0.19
20 8 0.22
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (17 bp):
TTAAAAATTATAAATAA
Found at i:7856091 original size:156 final size:156
Alignment explanation
Indices: 7855694--7856154 Score: 743
Period size: 152 Copynumber: 3.0 Consensus size: 156
7855684 TAAAATTTTA
* * *
7855694 CCAAGTAATTAGTTGTTGGAAATGATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAA
1 CCAAGTAATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAA
*
7855759 AATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGGGGCTCCGTCGTCGG
66 AATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGG
* *
7855824 ATTTATTAAAGAAAAAACAAAATCAT
131 ATTAATTAAAGAAAAAACAAAATCAG
* *
7855850 CC----AATTAATTATTGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAAAA
1 CCAAGTAATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAA
*
7855911 AATTCCCTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGG
66 AATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGG
7855976 ATTAATTAAA-AAAAAATCAAAATCAG
131 ATTAATTAAAGAAAAAA-CAAAATCAG
* *
7856002 CCAAGTAATTAATTATCGGAAATTATTCTCAATTGACTATAATACTTTTAGCAGAAAATTGAGAA
1 CCAAGTAATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAA
* *
7856067 AATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCG
66 AATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTG-TTTCACTTGCAGAGGCTCCGTCGTCG
*
7856132 GATTAATTAAAGAAAAAAGAAAA
130 GATTAATTAAAGAAAAAACAAAA
7856155 AAAAAATCAA
Statistics
Matches: 281, Mismatches: 17, Indels: 13
0.90 0.05 0.04
Matches are distributed among these distances:
151 6 0.02
152 136 0.48
156 94 0.33
157 39 0.14
158 6 0.02
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (156 bp):
CCAAGTAATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAA
AATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGG
ATTAATTAAAGAAAAAACAAAATCAG
Found at i:7856199 original size:1 final size:1
Alignment explanation
Indices: 7856195--7856224 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
7856185 AAAAAAATTC
7856195 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7856225 CCTGGAGCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7856574 original size:20 final size:20
Alignment explanation
Indices: 7856545--7856590 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
7856535 TGAAGATTCA
*
7856545 CCGGATTCTGGAAATTTTCG
1 CCGGAATCTGGAAATTTTCG
***
7856565 CCGGAATCTGGGTTTTTTCG
1 CCGGAATCTGGAAATTTTCG
7856585 CCGGAA
1 CCGGAA
7856591 GTTGGCCGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.33
Consensus pattern (20 bp):
CCGGAATCTGGAAATTTTCG
Found at i:7856681 original size:31 final size:31
Alignment explanation
Indices: 7856643--7856701 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
7856633 ACTGGGCTGG
*
7856643 TCGCCGGAAACTTCAATGTTGGTCGGAATTT
1 TCGCCGGAAACTTCAATGTTGGCCGGAATTT
7856674 TCGCCGGAAACTTCAATGTTGGCCGGAA
1 TCGCCGGAAACTTCAATGTTGGCCGGAA
7856702 AATTCAACCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (31 bp):
TCGCCGGAAACTTCAATGTTGGCCGGAATTT
Found at i:7857057 original size:12 final size:12
Alignment explanation
Indices: 7857040--7857072 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
7857030 CTAGCCCTCC
7857040 AAAATAAAAATT
1 AAAATAAAAATT
7857052 AAAAT-AAAATT
1 AAAATAAAAATT
7857063 AAAA-AAAAAT
1 AAAATAAAAAT
7857073 CTAGATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAATAAAAATT
Found at i:7857380 original size:20 final size:20
Alignment explanation
Indices: 7857357--7857395 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
7857347 CCATTTGGGC
7857357 CAGGCCCAATTGATCCGGGT
1 CAGGCCCAATTGATCCGGGT
7857377 CAGGCCCAATTGATCCGGG
1 CAGGCCCAATTGATCCGGG
7857396 CCCGGACCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.18
Consensus pattern (20 bp):
CAGGCCCAATTGATCCGGGT
Found at i:7857510 original size:1 final size:1
Alignment explanation
Indices: 7857504--7857599 Score: 156
Period size: 1 Copynumber: 96.0 Consensus size: 1
7857494 GACATTTTCA
* * * *
7857504 TTTTTTTGTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7857569 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7857600 AGCTCCTCTT
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
1 87 1.00
ACGTcount: A:0.00, C:0.00, G:0.04, T:0.96
Consensus pattern (1 bp):
T
Found at i:7857814 original size:42 final size:41
Alignment explanation
Indices: 7857601--7857931 Score: 504
Period size: 42 Copynumber: 8.0 Consensus size: 41
7857591 TTTTTTTTTA
** * * *
7857601 GCTCCTCTTGACAGAGGCTCTACGACTTTGAAAAATAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
* *
7857642 GCTCCTCTAAACAGAGGTACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
7857683 GCTCCTCTAAACAGAGGCA--ACGGAACTTTGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCAC-G-ACTTTGAAAAGTAAATT
*
7857724 GCTCCTCTCAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
7857765 GCTCCTCTCAACAGAGGCACCACGACTTTAGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTT-GAAAAGTAAATT
7857807 GCTCCTCTCAACAGAGGCACCACGACTTTAGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTT-GAAAAGTAAATT
7857849 GCTCCTCTCAACAGAGGCACCACGACTTTAGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTT-GAAAAGTAAATT
*
7857891 GCTCCTCTCAACAGAGGCACCACGACTTTGGAAAAATAAAT
1 GCTCCTCTCAACAGAGGCACCACGACTTT-GAAAAGTAAAT
7857932 ACTCCTTGAC
Statistics
Matches: 273, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
39 2 0.01
40 1 0.00
41 133 0.49
42 135 0.49
43 2 0.01
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (41 bp):
GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:7859010 original size:9 final size:9
Alignment explanation
Indices: 7858998--7859049 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
7858988 CATTTTTTCA
7858998 TTTTTATTT
1 TTTTTATTT
*
7859007 TTTTCATTT
1 TTTTTATTT
*
7859016 TCTCATTT-TTA
1 T-T--TTTATTT
7859027 TTTTTATTT
1 TTTTTATTT
7859036 TTTTTATTT
1 TTTTTATTT
7859045 TTTTT
1 TTTTT
7859050 TCAAGCATAG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
8 3 0.09
9 25 0.71
10 2 0.06
11 3 0.09
12 2 0.06
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTATTT
Found at i:7859039 original size:15 final size:15
Alignment explanation
Indices: 7858944--7859050 Score: 80
Period size: 15 Copynumber: 6.9 Consensus size: 15
7858934 TCCTTTTTCA
*
7858944 TTCACTTTTTCTTTTT
1 TTCA-TTTTTATTTTT
*
7858960 TCCATTTTTTCATTTTT
1 TTCA-TTTTT-ATTTTT
7858977 TCATCATTTTTCA-TTTT
1 T--TCATTTTT-ATTTTT
7858994 TTCATTTTTATTTTT
1 TTCATTTTTATTTTT
7859009 TTCATTTTCTCA--TTT
1 TTCATTTT-T-ATTTTT
7859024 TT-ATTTTTATTTTT
1 TTCATTTTTATTTTT
*
7859038 TTTATTTTT-TTTT
1 TTCATTTTTATTTT
7859051 CAAGCATAGT
Statistics
Matches: 78, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
12 1 0.01
13 1 0.01
14 15 0.19
15 31 0.40
16 9 0.12
17 12 0.15
18 7 0.09
19 2 0.03
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (15 bp):
TTCATTTTTATTTTT
Found at i:7859046 original size:6 final size:7
Alignment explanation
Indices: 7858980--7859037 Score: 59
Period size: 8 Copynumber: 8.1 Consensus size: 7
7858970 CATTTTTTCA
7858980 TCATTTT
1 TCATTTT
7858987 TCATTTTT
1 TCA-TTTT
7858995 TCATTTT
1 TCATTTT
7859002 T-ATTTTTT
1 TCA--TTTT
7859010 TCATTTT
1 TCATTTT
7859017 CTCATTTT
1 -TCATTTT
7859025 T-ATTTT
1 TCATTTT
7859031 T-ATTTT
1 TCATTTT
7859037 T
1 T
7859038 TTTATTTTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
6 13 0.28
7 13 0.28
8 19 0.41
9 1 0.02
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (7 bp):
TCATTTT
Found at i:7862120 original size:20 final size:20
Alignment explanation
Indices: 7862095--7862134 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7862085 GGCTTTTTCA
7862095 AATGTTTCTTATCCTGACAT
1 AATGTTTCTTATCCTGACAT
7862115 AATGTTTCTTATCCTGACAT
1 AATGTTTCTTATCCTGACAT
7862135 TATTCGTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.45
Consensus pattern (20 bp):
AATGTTTCTTATCCTGACAT
Found at i:7870938 original size:29 final size:31
Alignment explanation
Indices: 7870870--7870928 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 31
7870860 TTTTTCTGTT
*
7870870 TATTTTTTTAGAATGTCTGAAAATTATATTA
1 TATTTTTTTAGAATATCTGAAAATTATATTA
7870901 TATTTTTTT-GAATATCT-AAAATTATATT
1 TATTTTTTTAGAATATCTGAAAATTATATT
7870929 TTTTTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 11 0.41
30 7 0.26
31 9 0.33
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.54
Consensus pattern (31 bp):
TATTTTTTTAGAATATCTGAAAATTATATTA
Found at i:7879080 original size:19 final size:20
Alignment explanation
Indices: 7879044--7879087 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
7879034 TAAAAATTAT
* *
7879044 ATTAAAATAATATATCAA-A
1 ATTAAAAAAAAATATCAAGA
*
7879063 ATTAAAAAAAAATTTCAAGA
1 ATTAAAAAAAAATATCAAGA
7879083 ATTAA
1 ATTAA
7879088 TAAATCAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (20 bp):
ATTAAAAAAAAATATCAAGA
Found at i:7884336 original size:47 final size:47
Alignment explanation
Indices: 7884267--7884360 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
7884257 AAGTAGATAG
*
7884267 TACATCACAATAAAGTTCTTCCATAATCATTTCAATTTTGAAAACAT
1 TACATCACAATAAAGTTCTTCCATAATCATTTCAAATTTGAAAACAT
* *
7884314 TACATCACAATAGAGTTCTTCCATTATCATTTCAAATTTGAAAACAT
1 TACATCACAATAAAGTTCTTCCATAATCATTTCAAATTTGAAAACAT
7884361 AAGCTCTCTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.36
Consensus pattern (47 bp):
TACATCACAATAAAGTTCTTCCATAATCATTTCAAATTTGAAAACAT
Found at i:7894737 original size:6 final size:6
Alignment explanation
Indices: 7894713--7894753 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
7894703 TTCGAATCCA
* * *
7894713 TTTAAT ATTAAA TTAAAT TTTAAT TTTAAT TTTAAT TTTAA
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAA
7894754 AGTTCAAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (6 bp):
TTTAAT
Found at i:7894790 original size:25 final size:25
Alignment explanation
Indices: 7894762--7894811 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
7894752 AAAGTTCAAA
7894762 ATTTATTTAAATTT-AATTAAATTTT
1 ATTT-TTTAAATTTGAATTAAATTTT
* *
7894787 ATTTTTTTAATTTGAATTCAATTTT
1 ATTTTTTAAATTTGAATTAAATTTT
7894812 TATAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
ATTTTTTAAATTTGAATTAAATTTT
Found at i:7895130 original size:19 final size:20
Alignment explanation
Indices: 7895106--7895143 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
7895096 TATTTATAAT
7895106 TAAATAATT-ATA-ATTAAAA
1 TAAAT-ATTAATATATTAAAA
7895125 TAAATATTAATATATTAAA
1 TAAATATTAATATATTAAA
7895144 TTATTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 8 0.47
20 6 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAATATTAATATATTAAAA
Found at i:7895195 original size:127 final size:130
Alignment explanation
Indices: 7894989--7895230 Score: 386
Period size: 127 Copynumber: 1.9 Consensus size: 130
7894979 ATTAAATATA
7894989 AAAATAAATATTAATAAATCAAATTATTTAAATTTAATTCAATTCAATAATAATTAATTTAAATT
1 AAAATAAATATTAATAAATCAAATTATTTAAATTTAATT--ATTCAATAATAATTAATTTAAATT
*
7895054 TAAATTTTATTTAAATCA-AATTATTTATAAG-TATTAATGTATTATTTATAATTAAATAATTAT
64 TAAATTTTATTTAAAT-AGAATAATTTAT-AGTTATTAATGTATTATTTATAATTAAATAATTAT
7895117 AATT
127 AATT
* *
7895121 AAAATAAATATTAATATATTAAATTATTTAAATTTAA-T-TT-AATAATAATTAATTTAAATTTA
1 AAAATAAATATTAATAAATCAAATTATTTAAATTTAATTATTCAATAATAATTAATTTAAATTTA
7895183 AATTTTATTTAAATAGAATAATTTATAGTTATTAATGTATTATTTATA
66 AATTTTATTTAAATAGAATAATTTATAGTTATTAATGTATTATTTATA
7895231 TTTCCAAAAA
Statistics
Matches: 105, Mismatches: 3, Indels: 9
0.90 0.03 0.08
Matches are distributed among these distances:
126 3 0.03
127 64 0.61
128 2 0.02
131 1 0.01
132 35 0.33
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (130 bp):
AAAATAAATATTAATAAATCAAATTATTTAAATTTAATTATTCAATAATAATTAATTTAAATTTA
AATTTTATTTAAATAGAATAATTTATAGTTATTAATGTATTATTTATAATTAAATAATTATAATT
Found at i:7895449 original size:146 final size:146
Alignment explanation
Indices: 7895252--7895526 Score: 403
Period size: 154 Copynumber: 1.8 Consensus size: 146
7895242 AAAAAGTGAA
*
7895252 AGTTCAGATTTTGTCCTTTTTTTTTTTTTTTGTGAATTGTTGGCCAAAAGGGC-GGGGGG-GTTT
1 AGTTCAGATTTTGTCATTTTTTTTTTTTTTTGTGAATTGTTGGCCAAAAGGGCGGGGGGGTGTTT
*
7895315 GGTATTAATGGTGGATTG-GATAGGAAATTTTTGACCCATTTATGAAATGAATTATTTACAGTCC
66 GGTATTAATGGTGGATTGAG-TAGGAAATTTTTGACCCATTTATGAAATGAATCATTTACAGTCC
7895379 TAGAGGAAACAGGCGGC
130 TAGAGGAAACAGGCGGC
7895396 AGTTCAGATTTTGTCTGATTTTTTTTTTTTTTTGTGAATTGTTGGCCAAAAGGGCGAGGGGGGGG
1 AGTTCAGATTTTGTC--ATTTTTTTTTTTTTTTGTGAATTGTTGGCCAAAAGGGC------GGGG
* * *
7895461 GGGTGTTTGGTGTTAATGGTGGATTGAGTGGGAATTTTTTGACCCATTTATGAAATGAATCATTT
58 GGGTGTTTGGTATTAATGGTGGATTGAGTAGGAAATTTTTGACCCATTTATGAAATGAATCATTT
7895526 A
123 A
7895527 TGATAATTTT
Statistics
Matches: 115, Mismatches: 5, Indels: 12
0.87 0.04 0.09
Matches are distributed among these distances:
144 15 0.13
146 37 0.32
153 6 0.05
154 56 0.49
155 1 0.01
ACGTcount: A:0.23, C:0.09, G:0.29, T:0.40
Consensus pattern (146 bp):
AGTTCAGATTTTGTCATTTTTTTTTTTTTTTGTGAATTGTTGGCCAAAAGGGCGGGGGGGTGTTT
GGTATTAATGGTGGATTGAGTAGGAAATTTTTGACCCATTTATGAAATGAATCATTTACAGTCCT
AGAGGAAACAGGCGGC
Found at i:7897550 original size:22 final size:19
Alignment explanation
Indices: 7897525--7897571 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 19
7897515 AAGATGCTCT
*
7897525 TTCATTCTAAATGATATGCTAA
1 TTCATTC-AAATAATAT-CT-A
7897547 TTCATTCAAATAATATCTA
1 TTCATTCAAATAATATCTA
7897566 TTCATT
1 TTCATT
7897572 AAAAGAAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 7 0.29
20 2 0.08
21 8 0.33
22 7 0.29
ACGTcount: A:0.36, C:0.15, G:0.04, T:0.45
Consensus pattern (19 bp):
TTCATTCAAATAATATCTA
Found at i:7905355 original size:3 final size:3
Alignment explanation
Indices: 7905347--7905381 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7905337 TAAACTCATA
7905347 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
7905382 ATTATTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:7909952 original size:10 final size:9
Alignment explanation
Indices: 7909915--7909974 Score: 52
Period size: 9 Copynumber: 6.6 Consensus size: 9
7909905 AATCAAACCA
7909915 AATCATCGAT
1 AATCATC-AT
* *
7909925 CAATCATTAA
1 -AATCATCAT
7909935 AATCATCAT
1 AATCATCAT
7909944 AAGTCATCAT
1 AA-TCATCAT
7909954 AATCAT-A-
1 AATCATCAT
7909961 AATCATCAT
1 AATCATCAT
*
7909970 TATCA
1 AATCA
7909975 ATCGTTTATC
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
7 6 0.15
8 2 0.05
9 17 0.41
10 10 0.24
11 6 0.15
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.32
Consensus pattern (9 bp):
AATCATCAT
Found at i:7909958 original size:16 final size:16
Alignment explanation
Indices: 7909939--7909974 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7909929 CATTAAAATC
*
7909939 ATCATAAGTCATCATA
1 ATCATAAATCATCATA
*
7909955 ATCATAAATCATCATT
1 ATCATAAATCATCATA
7909971 ATCA
1 ATCA
7909975 ATCGTTTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.19, G:0.03, T:0.33
Consensus pattern (16 bp):
ATCATAAATCATCATA
Found at i:7914990 original size:14 final size:15
Alignment explanation
Indices: 7914973--7915001 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7914963 TATATTTATA
7914973 TAATTATA-ATATTT
1 TAATTATATATATTT
7914987 TAATTATATATATTT
1 TAATTATATATATTT
7915002 ATTTCGATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TAATTATATATATTT
Found at i:7924899 original size:37 final size:37
Alignment explanation
Indices: 7924850--7924938 Score: 130
Period size: 37 Copynumber: 2.5 Consensus size: 37
7924840 CTTTTTTTTA
7924850 TTAATA-A-TATAATAATATTTATTAATATATTATTT
1 TTAATATATTATAATAATATTTATTAATATATTATTT
*
7924885 TTAATATATTATAATAGTATTTATTAATATATTATTT
1 TTAATATATTATAATAATATTTATTAATATATTATTT
* *
7924922 ATAA-ATATTATATTAAT
1 TTAATATATTATAATAAT
7924939 TAATATTATA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
35 6 0.12
36 12 0.25
37 30 0.62
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (37 bp):
TTAATATATTATAATAATATTTATTAATATATTATTT
Found at i:7924920 original size:15 final size:15
Alignment explanation
Indices: 7924865--7925067 Score: 83
Period size: 15 Copynumber: 13.8 Consensus size: 15
7924855 AATATAATAA
7924865 TATTTATTAATATAT
1 TATTTATTAATATAT
7924880 TATTT-TT-A-ATA-
1 TATTTATTAATATAT
*
7924891 TA-TTA-T-A-ATAG
1 TATTTATTAATATAT
7924902 TATTTATTAATATAT
1 TATTTATTAATATAT
7924917 TATTTA-TAA-ATAT
1 TATTTATTAATATAT
*
7924930 TA--TATTAAT-TAA
1 TATTTATTAATATAT
*
7924942 TATTATATTAATAAAT
1 TATT-TATTAATATAT
* * *
7924958 AATATATTAATAAAT
1 TATTTATTAATATAT
*
7924973 ATATAATATT-ATATTAGT
1 -TAT-TTATTAATA-TA-T
* * * * *
7924991 AAATAAATAATGTAT
1 TATTTATTAATATAT
*
7925006 TATTTATTAATATAA
1 TATTTATTAATATAT
*
7925021 TATATTATTATATTACTAA
1 TAT-TTATTA-A-TA-TAT
*
7925040 TATTTATTAATATAG
1 TATTTATTAATATAT
7925055 TATTTATATAATA
1 TATTTAT-TAATA
7925068 AAAATATTAT
Statistics
Matches: 145, Mismatches: 21, Indels: 43
0.69 0.10 0.21
Matches are distributed among these distances:
10 7 0.05
11 6 0.04
12 13 0.09
13 8 0.06
14 6 0.04
15 54 0.37
16 25 0.17
17 11 0.08
18 9 0.06
19 6 0.04
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
TATTTATTAATATAT
Found at i:7924942 original size:30 final size:30
Alignment explanation
Indices: 7924902--7925035 Score: 98
Period size: 30 Copynumber: 4.6 Consensus size: 30
7924892 ATTATAATAG
*
7924902 TATTTATTAATATATTATTTATAAATATTA
1 TATTAATTAATATATTATTTATAAATATTA
* *
7924932 TATTAATTAATAT-TATATTAATAAATAATA
1 TATTAATTAATATAT-TATTTATAAATATTA
* * * *
7924962 TATTAATAAATATATAATATTAT-ATTAGTA
1 TATTAATTAATATATTAT-TTATAAATATTA
* * * * *
7924992 -AATAAATAATGTATTATTTATTAATATAA
1 TATTAATTAATATATTATTTATAAATATTA
*
7925021 TA-T-ATTATTATATTA
1 TATTAATTAATATATTA
7925036 CTAATATTTA
Statistics
Matches: 80, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
28 13 0.16
29 18 0.22
30 45 0.56
31 4 0.05
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (30 bp):
TATTAATTAATATATTATTTATAAATATTA
Found at i:7924951 original size:41 final size:37
Alignment explanation
Indices: 7924857--7924954 Score: 126
Period size: 37 Copynumber: 2.5 Consensus size: 37
7924847 TTATTAATAA
*
7924857 TATAATAATATTTATTAATATATTATTTTTAATATAT
1 TATAATAATATTTATTAATATATTATTTTAAATATAT
*
7924894 TATAATAGTATTTATTAATATATTATTTATAAATAT-T
1 TATAATAATATTTATTAATATATTATTT-TAAATATAT
7924931 ATATTAATTAATATTATATTAATA
1 -TA-TAA-TAATATT-TATTAATA
7924955 AATAATATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
37 28 0.53
38 8 0.15
39 3 0.06
40 6 0.11
41 8 0.15
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (37 bp):
TATAATAATATTTATTAATATATTATTTTAAATATAT
Found at i:7925017 original size:37 final size:36
Alignment explanation
Indices: 7924852--7925023 Score: 110
Period size: 37 Copynumber: 4.9 Consensus size: 36
7924842 TTTTTTTATT
* * **
7924852 AATAATATAATAATATTTATTAATA-TATTATTTTTA
1 AATAATATATTATTATTTATTAATATTA-TATTAATA
* * *
7924888 ATATATTATAATAGTATTTATTAATA-TATTATT--T-
1 A-ATAATATATTATTATTTATTAATATTA-TATTAATA
*
7924922 -ATAA-ATATTA-TATTAATTAATATTATATTAATA
1 AATAATATATTATTATTTATTAATATTATATTAATA
* ** *
7924955 AATAATATATTAATAAATATATAATATTATATTAGTA
1 AATAATATATTATTATTTAT-TAATATTATATTAATA
*
7924992 AATAA-ATAATGTATTATTTATTAATATAATAT
1 AATAATAT-AT-TATTATTTATTAATATTATAT
7925024 ATTATTATAT
Statistics
Matches: 112, Mismatches: 13, Indels: 21
0.77 0.09 0.14
Matches are distributed among these distances:
30 15 0.13
31 7 0.06
32 4 0.04
34 4 0.04
35 7 0.06
36 7 0.06
37 61 0.54
38 7 0.06
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (36 bp):
AATAATATATTATTATTTATTAATATTATATTAATA
Found at i:7925043 original size:93 final size:89
Alignment explanation
Indices: 7924909--7925094 Score: 191
Period size: 93 Copynumber: 2.0 Consensus size: 89
7924899 TAGTATTTAT
* *
7924909 TAATATATTATTTATAAATATTATATTAATTAATATTATATTAATAAATAATA-TATTAATA-AA
1 TAATATATTATTTATAAATAATATATTAATTAATATAATATTAATAAAT-ATAGTATTAATATAA
*
7924972 TATATAATATTATATTAGT-AAATAAA
65 TA-AAAATATTATATTAGTAAAAT-AA
* * * *
7924998 TAATGTATTATTTATTAATATAATATATT-ATTATATTACTAATATTTATTAATATAGTATTTAT
1 TAATATATTATTTA-TAA-ATAATATATTAATTA-A-TA-TAATATTAATAAATATAGTATTAAT
* *
7925062 ATAATAAAAATATTATTTTATTAAAATAA
61 ATAATAAAAATATTATATTAGTAAAATAA
7925091 TAAT
1 TAAT
7925095 TGTAACCTCA
Statistics
Matches: 80, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
89 13 0.16
90 7 0.09
91 10 0.12
92 5 0.06
93 37 0.46
94 8 0.10
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (89 bp):
TAATATATTATTTATAAATAATATATTAATTAATATAATATTAATAAATATAGTATTAATATAAT
AAAAATATTATATTAGTAAAATAA
Found at i:7925050 original size:10 final size:11
Alignment explanation
Indices: 7924847--7925064 Score: 95
Period size: 11 Copynumber: 20.0 Consensus size: 11
7924837 CTCCTTTTTT
7924847 TTATTAATA-A
1 TTATTAATATA
*
7924857 TATAATAATAT-
1 T-TATTAATATA
7924868 TTATTAATATA
1 TTATTAATATA
7924879 TTATTTTTAATATA
1 TTA---TTAATATA
7924893 TTA-TAATAGTA
1 TTATTAATA-TA
7924904 TTTATTAATATA
1 -TTATTAATATA
*
7924916 TTATTTATA-A
1 TTATTAATATA
*
7924926 ATATT-ATAT-
1 TTATTAATATA
*
7924935 TAATTAATAT-
1 TTATTAATATA
7924945 TATATTAATA-A
1 T-TATTAATATA
7924956 --A-TAATATA
1 TTATTAATATA
*
7924964 TTAATAA-ATA
1 TTATTAATATA
* *
7924974 TATAATATTATA
1 T-TATTAATATA
* *
7924986 TTAGTAAATAAA
1 TTA-TTAATATA
* *
7924998 TAATGTATTAT-
1 TTAT-TAATATA
7925009 TTATTAATATAA
1 TTATTAATAT-A
*
7925021 TATATTATTATA
1 T-TATTAATATA
*
7925033 TTACTAATAT-
1 TTATTAATATA
7925043 TTATTAATATA
1 TTATTAATATA
* *
7925054 GTATTTATATA
1 TTATTAATATA
7925065 ATAAAAATAT
Statistics
Matches: 159, Mismatches: 24, Indels: 49
0.69 0.10 0.21
Matches are distributed among these distances:
7 5 0.03
8 2 0.01
9 6 0.04
10 43 0.27
11 58 0.36
12 21 0.13
13 13 0.08
14 11 0.07
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (11 bp):
TTATTAATATA
Found at i:7925302 original size:20 final size:21
Alignment explanation
Indices: 7925269--7925315 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
7925259 TTTTAATTTT
*
7925269 CAAAAAATCCGAAAACGAAAA
1 CAAAAAATCAGAAAACGAAAA
* *
7925290 CAAAAAA-CAGAAAATGGAAA
1 CAAAAAATCAGAAAACGAAAA
7925310 CAAAAA
1 CAAAAA
7925316 CAAACGACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.70, C:0.15, G:0.11, T:0.04
Consensus pattern (21 bp):
CAAAAAATCAGAAAACGAAAA
Found at i:7930754 original size:19 final size:19
Alignment explanation
Indices: 7930730--7930767 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7930720 GCCTCAAAAG
7930730 AACCACGTATAAGCAGCAC
1 AACCACGTATAAGCAGCAC
7930749 AACCACGTATAAGCAGCAC
1 AACCACGTATAAGCAGCAC
7930768 CGGCACAGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.32, G:0.16, T:0.11
Consensus pattern (19 bp):
AACCACGTATAAGCAGCAC
Found at i:7938470 original size:21 final size:22
Alignment explanation
Indices: 7938436--7938490 Score: 69
Period size: 20 Copynumber: 2.6 Consensus size: 22
7938426 ATTTTTTTTG
* *
7938436 AATTAATATAATAAAAATTTAT
1 AATTAATAAAATAAAAATTTAA
*
7938458 TATTAA-AAAAT-AAAATTTAA
1 AATTAATAAAATAAAAATTTAA
7938478 AATTAATAAAATA
1 AATTAATAAAATA
7938491 GTTACTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 13 0.48
21 9 0.33
22 5 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
AATTAATAAAATAAAAATTTAA
Found at i:7938755 original size:20 final size:19
Alignment explanation
Indices: 7938715--7938770 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 19
7938705 TTAATTAATA
7938715 TATTA-AATTTTAATAAAAT
1 TATTATAATTTTAA-AAAAT
7938734 TA-TATAATATTTAAAAATAT
1 TATTATAAT-TTTAAAAA-AT
7938754 TATTATAATTTTAAAAA
1 TATTATAATTTTAAAAA
7938771 GTTTTAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
18 2 0.06
19 8 0.24
20 17 0.52
21 6 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
TATTATAATTTTAAAAAAT
Found at i:7951138 original size:23 final size:23
Alignment explanation
Indices: 7951108--7951151 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7951098 TTTGTTATAT
7951108 TAATAATATAAATACAATATAAA
1 TAATAATATAAATACAATATAAA
* *
7951131 TAATAATATTAGTACAATATA
1 TAATAATATAAATACAATATA
7951152 TCATTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (23 bp):
TAATAATATAAATACAATATAAA
Found at i:7955859 original size:23 final size:24
Alignment explanation
Indices: 7955815--7955860 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
7955805 TTATGAGATT
* *
7955815 AAAAATTTATTTTGATACTAATTAA
1 AAAAATATATTTT-ATAATAATTAA
7955840 AAAAATATATTTT-TAATAATT
1 AAAAATATATTTTATAATAATT
7955861 GTAGATCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 7 0.37
25 12 0.63
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (24 bp):
AAAAATATATTTTATAATAATTAA
Found at i:7959525 original size:29 final size:28
Alignment explanation
Indices: 7959475--7959540 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
7959465 CCCGAGTTAC
* *
7959475 AATTTTTT-TATAAAATATAAAATATAT
1 AATTTTTTATATAAAATAAAAAATAAAT
*
7959502 AATTTTTTATTTAATAATAAAAAATAAAT
1 AATTTTTTATATAA-AATAAAAAATAAAT
7959531 ATATTTTTTA
1 A-ATTTTTTA
7959541 AAAAATTACA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 8 0.24
28 4 0.12
29 13 0.39
30 8 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (28 bp):
AATTTTTTATATAAAATAAAAAATAAAT
Found at i:7960538 original size:26 final size:25
Alignment explanation
Indices: 7960508--7960565 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
7960498 TAATTTTAGT
* * *
7960508 TAATTATAATAAGAGAGGTATTTTCG
1 TAATTATAATAAAAGA-GCATTATCG
* *
7960534 TAATTTTGATAAAAGAGCATTATCG
1 TAATTATAATAAAAGAGCATTATCG
7960559 TAATTAT
1 TAATTAT
7960566 GGTTAGAGGA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.40, C:0.05, G:0.16, T:0.40
Consensus pattern (25 bp):
TAATTATAATAAAAGAGCATTATCG
Found at i:7963264 original size:21 final size:24
Alignment explanation
Indices: 7963213--7963264 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
7963203 GTTTTAAGTG
7963213 TAAAAA-AACTTTTAAAATATTTA
1 TAAAAATAACTTTTAAAATATTTA
* *
7963236 TAACAATAA-TTTTATAAT-TTT-
1 TAAAAATAACTTTTAAAATATTTA
7963257 TAAAAATA
1 TAAAAATA
7963265 TTTATTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 7 0.28
22 3 0.12
23 13 0.52
24 2 0.08
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (24 bp):
TAAAAATAACTTTTAAAATATTTA
Found at i:7963527 original size:25 final size:25
Alignment explanation
Indices: 7963490--7963538 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
7963480 ATAAAAATAC
*
7963490 AATTTTAACAAA-TATATATTTTTTT
1 AATTTTAAAAAATTAT-TATTTTTTT
7963515 AATTTTAAAAAATTATTATTTTTT
1 AATTTTAAAAAATTATTATTTTTT
7963539 AAAGGAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (25 bp):
AATTTTAAAAAATTATTATTTTTTT
Found at i:7968030 original size:23 final size:24
Alignment explanation
Indices: 7968004--7968056 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
7967994 AATATAAAAA
7968004 TAAAAAATAAAAAAATA-ATTTTT
1 TAAAAAATAAAAAAATATATTTTT
* *
7968027 TAAAAAATTAAAAATTATATTTTT
1 TAAAAAATAAAAAAATATATTTTT
*
7968051 TTAAAA
1 TAAAAA
7968057 TTTTAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 15 0.58
24 11 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
TAAAAAATAAAAAAATATATTTTT
Found at i:7968040 original size:25 final size:25
Alignment explanation
Indices: 7968004--7968065 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 25
7967994 AATATAAAAA
7968004 TAAAAAA-T-AAAAAAATAATTTTT
1 TAAAAAATTAAAAAAAATAATTTTT
** *
7968027 TAAAAAATTAAAAATTATATTTTTT
1 TAAAAAATTAAAAAAAATAATTTTT
**
7968052 TAAAATTTTAAAAA
1 TAAAAAATTAAAAA
7968066 TTTTTATGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 7 0.22
24 1 0.03
25 24 0.75
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
TAAAAAATTAAAAAAAATAATTTTT
Found at i:7970560 original size:7 final size:6
Alignment explanation
Indices: 7970546--7970588 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
7970536 AGTAAAAAAT
* **
7970546 AATAAA AATATAA AATAAA GATAAA ACCAAA AATAAA AATAAA
1 AATAAA AATA-AA AATAAA AATAAA AATAAA AATAAA AATAAA
7970589 GTAAGATAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:7971139 original size:44 final size:43
Alignment explanation
Indices: 7970929--7971140 Score: 185
Period size: 44 Copynumber: 4.8 Consensus size: 43
7970919 GAGGTTAGAC
* * * * *
7970929 AACTTTTTGAAAATTAAAAAGGTTTATCTAAACAAAAGCTCGAA
1 AACTTTTTAAAAATTTAAAAGGTTTCTCTAAAC-AAAGCTTGAT
* * *
7970973 AATTTTTTAAAAATTTGAAAGGTTGCTCTAAACAGAAGCTTGAT
1 AACTTTTTAAAAATTTAAAAGGTTTCTCTAAACA-AAGCTTGAT
* * * *
7971017 AACTTTTTAAAAATTTGAAAGGCTTT-TCTTAATAGAGACTTGAT
1 AACTTTTTAAAAATTTAAAAGG-TTTCTCTAAACAAAG-CTTGAT
* ** *
7971061 AACTTTTTAAAATTTTAAAAGG-CCCATATAAACAAAGCCTTGAT
1 AACTTTTTAAAAATTTAAAAGGTTTC-TCTAAACAAAG-CTTGAT
* * *
7971105 AACTTTTTGAGAATTTAAAAGGTTTCTTTAAACAAA
1 AACTTTTTAAAAATTTAAAAGGTTTCTCTAAACAAA
7971141 AACTCGACAA
Statistics
Matches: 134, Mismatches: 28, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
43 3 0.02
44 128 0.96
45 3 0.02
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (43 bp):
AACTTTTTAAAAATTTAAAAGGTTTCTCTAAACAAAGCTTGAT
Found at i:7971156 original size:88 final size:87
Alignment explanation
Indices: 7970929--7971161 Score: 211
Period size: 88 Copynumber: 2.6 Consensus size: 87
7970919 GAGGTTAGAC
* * * * * *
7970929 AACTTTTTGAAAATTAAAAAGGTTTATCTAAACAAAAGCTCGAAAATTTTTTAAAAATTTGAAAG
1 AACTTTTTGAAAATTTAAAAGGTTT-TTTAAACAAAAACTCGAAAACTTTTTAAAATTTTAAAAG
** *
7970994 GTTGCTCTAAACAGAAGCTTGAT
65 GTCCCTATAAACAGAAGCTTGAT
* * * * * * *
7971017 AACTTTTTAAAAATTTGAAAGGCTTTTCTT-AATAGAGACTTGATAACTTTTTAAAATTTTAAAA
1 AACTTTTTGAAAATTTAAAAGG-TTTT-TTAAACAAAAACTCGAAAACTTTTTAAAATTTTAAAA
7971081 GG-CCCATATAAACA-AAGCCTTGAT
64 GGTCCC-TATAAACAGAAG-CTTGAT
* * * *
7971105 AACTTTTTGAGAATTTAAAAGGTTTCTTTAAACAAAAACTCGACAAGTTTTTGAAAT
1 AACTTTTTGAAAATTTAAAAGGTTT-TTTAAACAAAAACTCGAAAACTTTTTAAAAT
7971162 ATTGAAACAT
Statistics
Matches: 113, Mismatches: 26, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
87 9 0.08
88 100 0.88
89 4 0.04
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.35
Consensus pattern (87 bp):
AACTTTTTGAAAATTTAAAAGGTTTTTTAAACAAAAACTCGAAAACTTTTTAAAATTTTAAAAGG
TCCCTATAAACAGAAGCTTGAT
Found at i:7980862 original size:31 final size:31
Alignment explanation
Indices: 7980824--7980885 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
7980814 TTTATGATAG
7980824 CCTATACTCTTGTTTTGTAAAAAGACTTTGT
1 CCTATACTCTTGTTTTGTAAAAAGACTTTGT
7980855 CCTATACTCTTGTTTTGTAAAAAGACTTTGT
1 CCTATACTCTTGTTTTGTAAAAAGACTTTGT
7980886 TAGGACATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (31 bp):
CCTATACTCTTGTTTTGTAAAAAGACTTTGT
Found at i:7982535 original size:8 final size:8
Alignment explanation
Indices: 7982524--7982549 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7982514 AGGAAAGAAG
7982524 AAAATAAA
1 AAAATAAA
7982532 AAAATAAA
1 AAAATAAA
7982540 AAAATAAA
1 AAAATAAA
7982548 AA
1 AA
7982550 TAAAACCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:7982540 original size:6 final size:6
Alignment explanation
Indices: 7982524--7982578 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
7982514 AGGAAAGAAG
* ** *
7982524 AAAATA AAAA-A ATAA-A AAAATA AAAATA AAACCA AAAATA AAATTA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
7982570 AAATTA AAA
1 AAAATA AAA
7982579 CTTAATTGAG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
5 8 0.20
6 33 0.80
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:7987913 original size:8 final size:8
Alignment explanation
Indices: 7987902--7987927 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7987892 AGGAAAGAAG
7987902 AAAATAAA
1 AAAATAAA
7987910 AAAATAAA
1 AAAATAAA
7987918 AAAATAAA
1 AAAATAAA
7987926 AA
1 AA
7987928 TAAAACCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:7987918 original size:6 final size:6
Alignment explanation
Indices: 7987902--7987956 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
7987892 AGGAAAGAAG
* ** *
7987902 AAAATA AAAA-A ATAA-A AAAATA AAAATA AAACCA AAAATA AAATTA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
7987948 AAATTA AAA
1 AAAATA AAA
7987957 CTTAATTGAG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
5 8 0.20
6 33 0.80
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:7991616 original size:13 final size:13
Alignment explanation
Indices: 7991600--7991624 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7991590 TTTTTAAAAA
7991600 ATATTTATTTTAT
1 ATATTTATTTTAT
7991613 ATATTTATTTTA
1 ATATTTATTTTA
7991625 AGAGCTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATATTTATTTTAT
Found at i:7994065 original size:3 final size:3
Alignment explanation
Indices: 7994057--7994086 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7994047 TGTGTACTAA
7994057 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7994087 TGAAGCAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7995814 original size:123 final size:121
Alignment explanation
Indices: 7995611--7995840 Score: 281
Period size: 123 Copynumber: 1.9 Consensus size: 121
7995601 ACCTAATATC
* * *
7995611 TAATGTGATTCTATGATATTTGTGTTTTTGTGTTGGACTTACCAAATGTTTAGTGTGATTCGGTA
1 TAATGTGATTCTATGATATTTGTGTTTTTGTATTGGACTTACCAAATGTTTAGTGTAATTCGATA
*
7995676 GATTTGTATGCTTTGTGTTGAGCTTGA-TGAGAACGTTAAGCTTAGAATTTTAATGTT
66 GATTTGTAT-CTTTGTGTTGAGCTTGATTG-GAACGTCAAGCTTAGAATTTTAATGTT
* *
7995733 TAATGTGATTCTATGAT-TTATGTGTATTTTGTATTAGG-CTTGCTC-AATGTTTGGTGTAATTC
1 TAATGTGATTCTATGATATT-TGTGT-TTTTGTATT-GGACTTAC-CAAATGTTTAGTGTAATTC
* *
7995795 GATGGATCTATGTAT-TTTGTGTTGAGCTTTATTGGAACGTCAAGCT
62 GATAGAT-T-TGTATCTTTGTGTTGAGCTTGATTGGAACGTCAAGCT
7995841 CTAATGAAAG
Statistics
Matches: 93, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
121 2 0.02
122 22 0.24
123 58 0.62
124 6 0.06
125 5 0.05
ACGTcount: A:0.22, C:0.08, G:0.23, T:0.46
Consensus pattern (121 bp):
TAATGTGATTCTATGATATTTGTGTTTTTGTATTGGACTTACCAAATGTTTAGTGTAATTCGATA
GATTTGTATCTTTGTGTTGAGCTTGATTGGAACGTCAAGCTTAGAATTTTAATGTT
Found at i:8006775 original size:20 final size:20
Alignment explanation
Indices: 8006736--8006772 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8006726 TAAAATTATT
*
8006736 TTTTAATTTATATAATAATA
1 TTTTAATTAATATAATAATA
8006756 TTTTAATTAATA-AATAA
1 TTTTAATTAATATAATAA
8006773 ATAATTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTTAATTAATATAATAATA
Found at i:8011042 original size:23 final size:21
Alignment explanation
Indices: 8011016--8011072 Score: 53
Period size: 23 Copynumber: 2.6 Consensus size: 21
8011006 CGGTTTCAAG
8011016 TATAAAAAAACTTTTAAAATATT
1 TATAAAAAAA-TTTTAAAAT-TT
* *
8011039 TATAATAATAATTTTATAATTT
1 TATAA-AAAAATTTTAAAATTT
*
8011061 T-TAAAAATATTT
1 TATAAAAAAATTT
8011073 ATTAAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 6 0.21
21 3 0.10
22 3 0.10
23 13 0.45
24 4 0.14
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
TATAAAAAAATTTTAAAATTT
Found at i:8015886 original size:24 final size:25
Alignment explanation
Indices: 8015859--8015912 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 25
8015849 AATATAAAAA
8015859 TAAAAAATAAAAAAATA-ATTTTTT
1 TAAAAAATAAAAAAATATATTTTTT
* *
8015883 TAAAAAATTAAAAATTATATTTTTT
1 TAAAAAATAAAAAAATATATTTTTT
8015908 TAAAA
1 TAAAA
8015913 TTTTAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 15 0.56
25 12 0.44
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
TAAAAAATAAAAAAATATATTTTTT
Found at i:8015922 original size:25 final size:24
Alignment explanation
Indices: 8015859--8015923 Score: 85
Period size: 25 Copynumber: 2.7 Consensus size: 24
8015849 AATATAAAAA
* *
8015859 TAAAAAATAAAAAAATAATTTTTT
1 TAAAAAATTAAAAATTAATTTTTT
8015883 TAAAAAATTAAAAATTATATTTTTT
1 TAAAAAATTAAAAATTA-ATTTTTT
**
8015908 TAAAATTTTAAAAATT
1 TAAAAAATTAAAAATT
8015924 TTTATGCTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 15 0.42
25 21 0.58
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TAAAAAATTAAAAATTAATTTTTT
Found at i:8019012 original size:7 final size:6
Alignment explanation
Indices: 8018998--8019040 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
8018988 AGTAAAAAAT
* **
8018998 AATAAA AATATAA AATAAA GATAAA ACCAAA AATAAA AATAAA
1 AATAAA AATA-AA AATAAA AATAAA AATAAA AATAAA AATAAA
8019041 GTAAGATAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:8019590 original size:44 final size:43
Alignment explanation
Indices: 8019381--8019591 Score: 185
Period size: 44 Copynumber: 4.8 Consensus size: 43
8019371 GAGGTTAGAC
* * * * *
8019381 AACTTTTTGAAAATTAAAAAGGTTTATCTAAACAAAAGCTCGAA
1 AACTTTTTAAAAATTTAAAAGGTTTCTCTAAAC-AAAGCTTGAT
* * *
8019425 AATTTTTTAAAAATTTGAAAGGTTGCTCTAAACAGAAGCTTGAT
1 AACTTTTTAAAAATTTAAAAGGTTTCTCTAAACA-AAGCTTGAT
* * *
8019469 AACTTTTTAAAAATTTGAAAGGCTTTCT-T-AATAGAGACTTGAT
1 AACTTTTTAAAAATTTAAAAGG-TTTCTCTAAACAAAG-CTTGAT
* ** *
8019512 AACTTTTTAAAATTTTAAAAGG-CCCATATAAACAAAGCCTTGAT
1 AACTTTTTAAAAATTTAAAAGGTTTC-TCTAAACAAAG-CTTGAT
* * *
8019556 AACTTTTTGAGAATTTAAAAGGTTTCTTTAAACAAA
1 AACTTTTTAAAAATTTAAAAGGTTTCTCTAAACAAA
8019592 AACTCGACAA
Statistics
Matches: 135, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 3 0.02
43 31 0.23
44 95 0.70
45 5 0.04
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (43 bp):
AACTTTTTAAAAATTTAAAAGGTTTCTCTAAACAAAGCTTGAT
Found at i:8029293 original size:31 final size:31
Alignment explanation
Indices: 8029255--8029316 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
8029245 TTTATGATAG
8029255 CCTATACTCTTGTTTTGTAAAAAGACTTTGT
1 CCTATACTCTTGTTTTGTAAAAAGACTTTGT
8029286 CCTATACTCTTGTTTTGTAAAAAGACTTTGT
1 CCTATACTCTTGTTTTGTAAAAAGACTTTGT
8029317 TAGGACATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (31 bp):
CCTATACTCTTGTTTTGTAAAAAGACTTTGT
Found at i:8030963 original size:8 final size:8
Alignment explanation
Indices: 8030952--8030977 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
8030942 AGGAAAGAAG
8030952 AAAATAAA
1 AAAATAAA
8030960 AAAATAAA
1 AAAATAAA
8030968 AAAATAAA
1 AAAATAAA
8030976 AA
1 AA
8030978 TAAAACCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:8030968 original size:6 final size:6
Alignment explanation
Indices: 8030952--8031006 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
8030942 AGGAAAGAAG
* ** *
8030952 AAAATA AAAA-A ATAA-A AAAATA AAAATA AAACCA AAAATA AAATTA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
8030998 AAATTA AAA
1 AAAATA AAA
8031007 CTTAATTGAG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
5 8 0.20
6 33 0.80
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:8034669 original size:13 final size:13
Alignment explanation
Indices: 8034653--8034677 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8034643 TTTTTAAAAA
8034653 ATATTTATTTTAT
1 ATATTTATTTTAT
8034666 ATATTTATTTTA
1 ATATTTATTTTA
8034678 AGAGCTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATATTTATTTTAT
Found at i:8034741 original size:20 final size:22
Alignment explanation
Indices: 8034721--8034766 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 22
8034711 CATTTAATTT
8034721 ACTGATAATATATAAAATTTATA
1 ACTGATAATATATAAAA-TTATA
8034744 CACTGATAATATATAAAA-TATA
1 -ACTGATAATATATAAAATTATA
8034766 A
1 A
8034767 ATTCATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 1 0.05
22 4 0.18
24 17 0.77
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (22 bp):
ACTGATAATATATAAAATTATA
Found at i:8037106 original size:3 final size:3
Alignment explanation
Indices: 8037098--8037148 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
8037088 TGTGTACTAA
8037098 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8037146 AAT
1 AAT
8037149 TGAAGCAATA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8038877 original size:123 final size:121
Alignment explanation
Indices: 8038674--8038903 Score: 272
Period size: 123 Copynumber: 1.9 Consensus size: 121
8038664 ACCTAATATC
* * * *
8038674 TAATGTGATTCTATGATATTTGTGTTTTTGTGTTGGACTTACCAAATGTTTAGTGTGATTCGGTA
1 TAATGTGAATCTATGATATTTGTGTTTTTGTATTGGACTTACCAAATGTTTAGTGTAATTCGATA
*
8038739 GATTTGTATGCTTTGTGTTGAGCTTGA-TGAGAACGTTAAGCTTAGAATTTTAATGTT
66 GATTTGTAT-CTTTGTGTTGAGCTTGATTG-GAACGTCAAGCTTAGAATTTTAATGTT
* *
8038796 TAATGTGAATCTATGAT-TTATGTGTATTTTGTATTAGG-CTTGCTC-AATGTTTGGTGTAATTC
1 TAATGTGAATCTATGATATT-TGTGT-TTTTGTATT-GGACTTAC-CAAATGTTTAGTGTAATTC
* *
8038858 GATGGATCTATGTAT-TTTGTGTTGAGCTTTATTGGAACGTCAAGCT
62 GATAGAT-T-TGTATCTTTGTGTTGAGCTTGATTGGAACGTCAAGCT
8038904 CTAATGAAAG
Statistics
Matches: 92, Mismatches: 9, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
121 2 0.02
122 21 0.23
123 58 0.63
124 6 0.07
125 5 0.05
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (121 bp):
TAATGTGAATCTATGATATTTGTGTTTTTGTATTGGACTTACCAAATGTTTAGTGTAATTCGATA
GATTTGTATCTTTGTGTTGAGCTTGATTGGAACGTCAAGCTTAGAATTTTAATGTT
Found at i:8047500 original size:64 final size:64
Alignment explanation
Indices: 8047389--8047792 Score: 523
Period size: 64 Copynumber: 6.3 Consensus size: 64
8047379 ACTGACTTTT
* * *
8047389 AGACTTAAAATTTTCC-AA--A-GGCTTGGGCTTGATTAGTTCACTGACTTTTCAAACCAGGGA
1 AGACTTAAATTTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTGACTTTTCAAACCAGGGA
* ** * *
8047449 AGATTTAACA-TTTTCCAAAGGAGGGCTTGGGCTTGTTTAGTTGACTAACTTTTCAAAAGCAGGG
1 AGACTTAA-ATTTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTGACTTTTC-AAACCAGGG
8047513 A
64 A
* *
8047514 AGACTTAAATTTTTTCAAAGGAGGGCTTGGGCTTAATTAGTTGACTGACTTTTCAACCCAGGGA
1 AGACTTAAATTTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTGACTTTTCAAACCAGGGA
* * * *
8047578 AGACTTAAATTTTTTCAAAGGATGGCTTGGGCTTAATTAGTTGACTGACTTTTCAACCCAGAGA
1 AGACTTAAATTTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTGACTTTTCAAACCAGGGA
* * * *
8047642 AGACTTAAAATTTTCCAAAGGAGGGCTTGGGCTTAAGTAATTCACTGACTTTTCAAACCAGGGA
1 AGACTTAAATTTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTGACTTTTCAAACCAGGGA
* * * *
8047706 AGATTTAACA-TTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTAACTTTCCAAAAGCAAGG
1 AGACTTAA-ATTTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTGACTTTTC-AAA-CCAGG
8047770 GA
63 GA
8047772 AGACTTAAATTTTTCCAAAGG
1 AGACTTAAATTTTTCCAAAGG
8047793 TATACTTCTT
Statistics
Matches: 303, Mismatches: 30, Indels: 16
0.87 0.09 0.05
Matches are distributed among these distances:
60 13 0.04
61 3 0.01
63 1 0.00
64 201 0.66
65 61 0.20
66 24 0.08
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (64 bp):
AGACTTAAATTTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTGACTTTTCAAACCAGGGA
Found at i:8047703 original size:128 final size:129
Alignment explanation
Indices: 8047389--8047792 Score: 577
Period size: 128 Copynumber: 3.2 Consensus size: 129
8047379 ACTGACTTTT
*
8047389 AGACTTAAAATTTTCC-AA--A-GGCTTGGGCTTGATTAGTTCACTGACTTTTCAAACCAGGGAA
1 AGACTTAAAATTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTCACTGACTTTTCAAACCAGGGAA
** *
8047450 GATTTAACATTTTCCAAAGGAGGGCTTGGGCTTGTTTAGTTGACTAACTTTTCAAAAGCAGGGA
66 GATTTAACATTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTAACTTTTCAAAACCAGGGA
* * * *
8047514 AGACTTAAATTTTTTCAAAGGAGGGCTTGGGCTTAATTAGTTGACTGACTTTTCAACCCAGGGAA
1 AGACTTAAAATTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTCACTGACTTTTCAAACCAGGGAA
* * * * * *
8047579 GACTTAA-ATTTTTTCAAAGGATGGCTTGGGCTTAATTAGTTGACTGACTTTTC-AACCCAGAGA
66 GATTTAACA-TTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTAACTTTTCAAAACCAGGGA
* *
8047642 AGACTTAAAATTTTCCAAAGGAGGGCTTGGGCTTAAGTAATTCACTGACTTTTCAAACCAGGGAA
1 AGACTTAAAATTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTCACTGACTTTTCAAACCAGGGAA
* *
8047707 GATTTAACATTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTAACTTTCCAAAAGCAAGGGA
66 GATTTAACATTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTAACTTTTCAAAA-CCAGGGA
*
8047772 AGACTTAAATTTTTCCAAAGG
1 AGACTTAAAATTTTCCAAAGG
8047793 TATACTTCTT
Statistics
Matches: 242, Mismatches: 29, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
125 14 0.06
126 2 0.01
128 114 0.47
129 87 0.36
130 25 0.10
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (129 bp):
AGACTTAAAATTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTCACTGACTTTTCAAACCAGGGAA
GATTTAACATTTTCCAAAGGAGGGCTTGGGCTTAATTAGTTGACTAACTTTTCAAAACCAGGGA
Found at i:8048484 original size:10 final size:10
Alignment explanation
Indices: 8048469--8048518 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 10
8048459 AGATGGATAT
8048469 TTTTATGATG
1 TTTTATGATG
8048479 TTTTATG--G
1 TTTTATGATG
8048487 ATTTTATGAATG
1 -TTTTATG-ATG
8048499 TTTTATGATG
1 TTTTATGATG
8048509 TATTT-TGATG
1 T-TTTATGATG
8048519 GATGTTATCA
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
8 1 0.03
9 7 0.20
10 16 0.46
11 10 0.29
12 1 0.03
ACGTcount: A:0.22, C:0.00, G:0.20, T:0.58
Consensus pattern (10 bp):
TTTTATGATG
Found at i:8048487 original size:46 final size:44
Alignment explanation
Indices: 8048437--8048524 Score: 115
Period size: 46 Copynumber: 2.0 Consensus size: 44
8048427 TATTTGATGG
* *
8048437 ATGGATGTTATGGATGTTTTATAGATGGATATTTTTAT-GATGTTTT
1 ATGGATGTTATGAATGTTTTAT-GAT-G-TATTTTGATGGATGTTTT
*
8048483 ATGGATTTTATGAATGTTTTATGATGTATTTTGATGGATGTT
1 ATGGATGTTATGAATGTTTTATGATGTATTTTGATGGATGTT
8048525 ATCAGGATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 8 0.21
44 7 0.18
45 3 0.08
46 20 0.53
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (44 bp):
ATGGATGTTATGAATGTTTTATGATGTATTTTGATGGATGTTTT
Found at i:8049587 original size:21 final size:21
Alignment explanation
Indices: 8049541--8049641 Score: 75
Period size: 21 Copynumber: 4.8 Consensus size: 21
8049531 AATAATTTTT
*
8049541 AATAAAATTTTGGTAATCTTC
1 AATATAATTTTGGTAATCTTC
8049562 AATATAATTTTGGTAA-CATTC
1 AATATAATTTTGGTAATC-TTC
* * *
8049583 AATATAAGTATAGTAAT-TT-
1 AATATAATTTTGGTAATCTTC
**
8049602 ATTATATAATTTTAATAATCATT-
1 A--ATATAATTTTGGTAATC-TTC
*
8049625 GATATAATTTTGGTAAT
1 AATATAATTTTGGTAAT
8049642 TTTTTATAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
19 1 0.02
20 3 0.05
21 58 0.91
23 2 0.03
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.46
Consensus pattern (21 bp):
AATATAATTTTGGTAATCTTC
Found at i:8058562 original size:12 final size:12
Alignment explanation
Indices: 8058545--8058575 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8058535 AGCAAATCGA
*
8058545 AGAAAATGATGC
1 AGAAAACGATGC
8058557 AGAAAACGATGC
1 AGAAAACGATGC
8058569 AGAAAAC
1 AGAAAAC
8058576 AGCCAGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.55, C:0.13, G:0.23, T:0.10
Consensus pattern (12 bp):
AGAAAACGATGC
Found at i:8059936 original size:8 final size:8
Alignment explanation
Indices: 8059923--8059950 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
8059913 AACAAAACTT
8059923 AAATTTTA
1 AAATTTTA
8059931 AAATTTTA
1 AAATTTTA
8059939 AAATTTTA
1 AAATTTTA
8059947 AAAT
1 AAAT
8059951 AAAAAGTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
AAATTTTA
Found at i:8064208 original size:26 final size:26
Alignment explanation
Indices: 8064179--8064231 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8064169 TTGTTAATAC
*
8064179 TGAAAATAAAATTATTATAAATCGTA
1 TGAAAATAAAATCATTATAAATCGTA
8064205 TGAAAATAAAATCATTATAAATCGTA
1 TGAAAATAAAATCATTATAAATCGTA
8064231 T
1 T
8064232 ATATTTTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.34
Consensus pattern (26 bp):
TGAAAATAAAATCATTATAAATCGTA
Found at i:8064924 original size:41 final size:43
Alignment explanation
Indices: 8064850--8064933 Score: 136
Period size: 41 Copynumber: 2.0 Consensus size: 43
8064840 GACAAATCTT
*
8064850 TATTTAATTGTTTATTTAGTATTTCAATTATTTTAAATGTTGA
1 TATTTAATTGCTTATTTAGTATTTCAATTATTTTAAATGTTGA
*
8064893 TATTTAATTGCTTA-TTA-TATTTCAATTATTTTAAATTTTGA
1 TATTTAATTGCTTATTTAGTATTTCAATTATTTTAAATGTTGA
8064934 CTTCTCATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
41 23 0.59
42 3 0.08
43 13 0.33
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (43 bp):
TATTTAATTGCTTATTTAGTATTTCAATTATTTTAAATGTTGA
Found at i:8066040 original size:21 final size:21
Alignment explanation
Indices: 8065938--8066040 Score: 75
Period size: 22 Copynumber: 4.9 Consensus size: 21
8065928 TTAGTTATTG
** *
8065938 ATAATTTAATAATAAATAAGT
1 ATAATTTAATTGTAAATATGT
* **
8065959 GATAATTTAATAGTAAAT-TAA
1 -ATAATTTAATTGTAAATATGT
*
8065980 ATAATTTAATTGTCAATCAATGT
1 ATAATTTAATTGTAAAT--ATGT
* *
8066003 -TAATTTAATGGTAAATATTT
1 ATAATTTAATTGTAAATATGT
*
8066023 ATAATTTAATTGTTAATA
1 ATAATTTAATTGTAAATA
8066041 ATTGAAAAGT
Statistics
Matches: 64, Mismatches: 13, Indels: 9
0.74 0.15 0.10
Matches are distributed among these distances:
20 18 0.28
21 15 0.23
22 30 0.47
23 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.44
Consensus pattern (21 bp):
ATAATTTAATTGTAAATATGT
Found at i:8066141 original size:22 final size:22
Alignment explanation
Indices: 8066097--8066176 Score: 76
Period size: 22 Copynumber: 3.7 Consensus size: 22
8066087 AAAGATTAGA
*
8066097 AGTAAATCAATC--TAATTTAAT
1 AGTAAATC-ATCGATAAATTAAT
8066118 AGTAAATCATCGATAAATTAAT
1 AGTAAATCATCGATAAATTAAT
* * *
8066140 AGTTAATAAAT-GATAACTTAAT
1 AGTAAAT-CATCGATAAATTAAT
*
8066162 AGTAAATCATGGATA
1 AGTAAATCATCGATA
8066177 GTATAATATA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
20 3 0.06
21 10 0.20
22 34 0.69
23 2 0.04
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (22 bp):
AGTAAATCATCGATAAATTAAT
Found at i:8066229 original size:22 final size:22
Alignment explanation
Indices: 8066109--8066233 Score: 92
Period size: 22 Copynumber: 5.7 Consensus size: 22
8066099 TAAATCAATC
* *
8066109 TAATTTAATAGTAAATCATCGA
1 TAATTTAATAATAAATCATGGA
* * * *
8066131 TAAATTAATAGTTAATAAAT-GA
1 TAATTTAATAATAAAT-CATGGA
* *
8066153 TAACTTAATAGTAAATCATGGA
1 TAATTTAATAATAAATCATGGA
* * * *
8066175 TAGTATAAT-ATAAATTATTGA
1 TAATTTAATAATAAATCATGGA
** *
8066196 TAATTTGGTAATGAATCATGGA
1 TAATTTAATAATAAATCATGGA
8066218 TAATTTAATAATAAAT
1 TAATTTAATAATAAAT
8066234 TGATAATAAA
Statistics
Matches: 78, Mismatches: 22, Indels: 6
0.74 0.21 0.06
Matches are distributed among these distances:
21 16 0.21
22 60 0.77
23 2 0.03
ACGTcount: A:0.47, C:0.04, G:0.11, T:0.38
Consensus pattern (22 bp):
TAATTTAATAATAAATCATGGA
Found at i:8066298 original size:22 final size:22
Alignment explanation
Indices: 8066273--8066453 Score: 64
Period size: 22 Copynumber: 8.2 Consensus size: 22
8066263 AATTAAGTGA
* *
8066273 TAAATCAGTACTAATATAGTAG
1 TAAATCAATAATAATATAGTAG
* *
8066295 TAAAT-ATATAATAATATAATAA
1 TAAATCA-ATAATAATATAGTAG
* * *
8066317 TAAGTCATTAATAATTTAGTAG
1 TAAATCAATAATAATATAGTAG
* * * *
8066339 TAAATTAATTATTGATA-ACTTAG
1 TAAATCAA-TAATAATATA-GTAG
* * *
8066362 T-AATAAATTAATAACT-TAATAA
1 TAAATCAA-TAATAA-TATAGTAG
* * * *
8066384 TAAATCATTAATAGTTTAGTAA
1 TAAATCAATAATAATATAGTAG
* * *
8066406 TAAATTAATAATAATTTAGTTG
1 TAAATCAATAATAATATAGTAG
* * * *
8066428 TAATTCAGTGATAATTTAGTAG
1 TAAATCAATAATAATATAGTAG
8066450 TAAA
1 TAAA
8066454 ATGGTTAATC
Statistics
Matches: 115, Mismatches: 36, Indels: 16
0.69 0.22 0.10
Matches are distributed among these distances:
21 2 0.02
22 97 0.84
23 16 0.14
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (22 bp):
TAAATCAATAATAATATAGTAG
Found at i:8066377 original size:19 final size:19
Alignment explanation
Indices: 8066353--8066416 Score: 74
Period size: 19 Copynumber: 3.2 Consensus size: 19
8066343 TTAATTATTG
8066353 ATAACTTAGTAATAAATTA
1 ATAACTTAGTAATAAATTA
*
8066372 ATAACTTAATAATAAATCATTA
1 ATAACTTAGTAAT-AA--ATTA
**
8066394 ATAGTTTAGTAATAAATTA
1 ATAACTTAGTAATAAATTA
8066413 ATAA
1 ATAA
8066417 TAATTTAGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
19 19 0.51
20 2 0.05
21 2 0.05
22 14 0.38
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (19 bp):
ATAACTTAGTAATAAATTA
Found at i:8066537 original size:21 final size:23
Alignment explanation
Indices: 8066495--8066571 Score: 65
Period size: 22 Copynumber: 3.5 Consensus size: 23
8066485 CTTCGATAAA
* *
8066495 TTAGTAATAAACCAGT-TATAACT
1 TTAGTAATAAATCA-TCAATAACT
8066518 TTA-TAA-AAATCATCAATAAC-
1 TTAGTAATAAATCATCAATAACT
*
8066538 TTAGTAATAAATTATCAATAA-T
1 TTAGTAATAAATCATCAATAACT
* *
8066560 TTAATAGTAAAT
1 TTAGTAATAAAT
8066572 TATTAATGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
20 4 0.09
21 13 0.29
22 25 0.56
23 3 0.07
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.36
Consensus pattern (23 bp):
TTAGTAATAAATCATCAATAACT
Found at i:8066617 original size:11 final size:11
Alignment explanation
Indices: 8066602--8066654 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
8066592 TAATATAAAG
*
8066602 ATAAATCATTG
1 ATAAATCATTA
* *
8066613 ATAAATTAATA
1 ATAAATCATTA
8066624 ATAAATCATTA
1 ATAAATCATTA
* * *
8066635 ATAATTTAGTA
1 ATAAATCATTA
8066646 ATAAATCAT
1 ATAAATCAT
8066655 ACGACATAAT
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.38
Consensus pattern (11 bp):
ATAAATCATTA
Found at i:8066627 original size:22 final size:22
Alignment explanation
Indices: 8066602--8066654 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
8066592 TAATATAAAG
*
8066602 ATAAATCATTGATAAATTAATA
1 ATAAATCATTAATAAATTAATA
* *
8066624 ATAAATCATTAATAATTTAGTA
1 ATAAATCATTAATAAATTAATA
8066646 ATAAATCAT
1 ATAAATCAT
8066655 ACGACATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.38
Consensus pattern (22 bp):
ATAAATCATTAATAAATTAATA
Found at i:8068507 original size:23 final size:22
Alignment explanation
Indices: 8068471--8068516 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
8068461 TAAAATTAAA
8068471 TATTATATTTTGATTTTGTTATT
1 TATTATATTTTGATTTTG-TATT
8068494 TATTA-ATTTATGATTTTGTATT
1 TATTATATTT-TGATTTTGTATT
8068516 T
1 T
8068517 GAAATTTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (22 bp):
TATTATATTTTGATTTTGTATT
Found at i:8068517 original size:29 final size:28
Alignment explanation
Indices: 8068473--8068531 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
8068463 AAATTAAATA
** *
8068473 TTATATTTTGATTTTGTTATTTATTAAT
1 TTATATTTTGATTTTGAAATTTAGTAAT
8068501 TTATGATTTTG-TATTTGAAATTTAGTAAT
1 TTAT-ATTTTGAT-TTTGAAATTTAGTAAT
8068530 TT
1 TT
8068532 TTTATTGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (28 bp):
TTATATTTTGATTTTGAAATTTAGTAAT
Found at i:8070994 original size:152 final size:152
Alignment explanation
Indices: 8070718--8071167 Score: 812
Period size: 152 Copynumber: 3.0 Consensus size: 152
8070708 TTTACCAAGT
* *
8070718 AATTAGTTGTTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
1 AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
* *
8070783 CTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGGGGCTCCGTCGTCGGATTTAT
66 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTTAT
8070848 TAAAGAAAAAACAAAATCATCC
131 TAAAGAAAAAACAAAATCATCC
*
8070870 AATTAATTATTGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
1 AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
8070935 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTTAT
66 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTTAT
8071000 TAAA-AAAAATACAAAATCATCC
131 TAAAGAAAAA-ACAAAATCATCC
8071022 AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
1 AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
* *
8071087 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGTAGAGGCTCCGTCGTCGGATTAAT
66 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTTAT
*
8071152 TAAAGAAAAAAGAAAA
131 TAAAGAAAAAACAAAA
8071168 AAAAATCAAG
Statistics
Matches: 287, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
151 5 0.02
152 277 0.97
153 5 0.02
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Consensus pattern (152 bp):
AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTTAT
TAAAGAAAAAACAAAATCATCC
Found at i:8071212 original size:1 final size:1
Alignment explanation
Indices: 8071208--8071237 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
8071198 AAAAAAATTC
8071208 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8071238 CCTGGAGCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8071215 original size:15 final size:14
Alignment explanation
Indices: 8071191--8071231 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 14
8071181 AAAATCAAAG
*
8071191 TCAAATAAAAAAAAT
1 TCAAA-AAAAAAAAA
8071206 TCAAAAAAAAAAAA
1 TCAAAAAAAAAAAA
8071220 --AAAAAAAAAAAA
1 TCAAAAAAAAAAAA
8071232 AAAAAACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 12 0.48
14 8 0.32
15 5 0.20
ACGTcount: A:0.85, C:0.05, G:0.00, T:0.10
Consensus pattern (14 bp):
TCAAAAAAAAAAAA
Found at i:8071601 original size:20 final size:20
Alignment explanation
Indices: 8071572--8071617 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
8071562 TGAAGATTCA
*
8071572 CCGGATTCTGGAAATTTTCG
1 CCGGAATCTGGAAATTTTCG
***
8071592 CCGGAATCTGGGTTTTTTCG
1 CCGGAATCTGGAAATTTTCG
8071612 CCGGAA
1 CCGGAA
8071618 GTTGGCCGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.33
Consensus pattern (20 bp):
CCGGAATCTGGAAATTTTCG
Found at i:8071659 original size:20 final size:20
Alignment explanation
Indices: 8071634--8071677 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
8071624 CGGAAATTCA
*
8071634 CCGGTTTCTGGGATTCTTTG
1 CCGGTTTCTGGGATTCTTCG
8071654 CCGGTTTCTGGGATTCTTCG
1 CCGGTTTCTGGGATTCTTCG
8071674 CCGG
1 CCGG
8071678 AAACTGGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.05, C:0.25, G:0.32, T:0.39
Consensus pattern (20 bp):
CCGGTTTCTGGGATTCTTCG
Found at i:8071684 original size:20 final size:20
Alignment explanation
Indices: 8071641--8071685 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
8071631 TCACCGGTTT
* ***
8071641 CTGGGATTCTTTGCCGGTTT
1 CTGGGATTCTTCGCCGGAAA
8071661 CTGGGATTCTTCGCCGGAAA
1 CTGGGATTCTTCGCCGGAAA
8071681 CTGGG
1 CTGGG
8071686 CAGTTCGCCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.33
Consensus pattern (20 bp):
CTGGGATTCTTCGCCGGAAA
Found at i:8072261 original size:3 final size:3
Alignment explanation
Indices: 8072253--8072278 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8072243 ATCTTACAAA
8072253 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
8072279 ATATATAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8072562 original size:1 final size:1
Alignment explanation
Indices: 8072552--8072670 Score: 94
Period size: 1 Copynumber: 119.0 Consensus size: 1
8072542 CAACTCAACA
* ** * * * ** * ** *
8072552 TTTTTATTTTTTGATTTTTTTTTATTTTTGTTTTTTATTTTTTTGATTTTTTTCTGATTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** *
8072617 ATTTTTTTTTTGATTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8072671 GCCGAAGCTC
Statistics
Matches: 91, Mismatches: 27, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 91 1.00
ACGTcount: A:0.07, C:0.01, G:0.06, T:0.87
Consensus pattern (1 bp):
T
Found at i:8072594 original size:21 final size:20
Alignment explanation
Indices: 8072568--8072670 Score: 108
Period size: 19 Copynumber: 5.2 Consensus size: 20
8072558 TTTTTTGATT
8072568 TTTTTTTATTTTTGTTTTTTA
1 TTTTTTTATTTTT-TTTTTTA
* *
8072589 TTTTTTTGA-TTTTTTTCTGA
1 TTTTTTT-ATTTTTTTTTTTA
*
8072609 TTTTTTTGATTTTTTTTTTGA
1 TTTTTTT-ATTTTTTTTTTTA
8072630 TTTTTTT-TTTTTTTTTTT-
1 TTTTTTTATTTTTTTTTTTA
8072648 TTGTTTTT-TTTTTTTTTTT-
1 TT-TTTTTATTTTTTTTTTTA
8072667 TTTT
1 TTTT
8072671 GCCGAAGCTC
Statistics
Matches: 75, Mismatches: 4, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.05
19 28 0.37
20 14 0.19
21 28 0.37
22 1 0.01
ACGTcount: A:0.06, C:0.01, G:0.06, T:0.87
Consensus pattern (20 bp):
TTTTTTTATTTTTTTTTTTA
Found at i:8072599 original size:32 final size:30
Alignment explanation
Indices: 8072552--8072670 Score: 138
Period size: 32 Copynumber: 3.9 Consensus size: 30
8072542 CAACTCAACA
8072552 TTTTTA-TTTTTTGATTTTTTTTTATTTTTGT
1 TTTTTATTTTTTTGATTTTTTTTT-TTTTT-T
8072583 TTTTTATTTTTTTGATTTTTTTCTGATTTTTTT
1 TTTTTATTTTTTTGATTTTTTT-T--TTTTTTT
**
8072616 GATTT-TTTTTTTGATTTTTTTTTTTTTTT
1 TTTTTATTTTTTTGATTTTTTTTTTTTTTT
*
8072645 TTTTTGTTTTTTT--TTTTTTTTTTTTT
1 TTTTTATTTTTTTGATTTTTTTTTTTTT
8072671 GCCGAAGCTC
Statistics
Matches: 79, Mismatches: 4, Indels: 13
0.82 0.04 0.14
Matches are distributed among these distances:
28 13 0.16
29 10 0.13
30 7 0.09
31 7 0.09
32 31 0.39
33 5 0.06
34 5 0.06
35 1 0.01
ACGTcount: A:0.07, C:0.01, G:0.06, T:0.87
Consensus pattern (30 bp):
TTTTTATTTTTTTGATTTTTTTTTTTTTTT
Found at i:8072743 original size:41 final size:41
Alignment explanation
Indices: 8072677--8073272 Score: 955
Period size: 41 Copynumber: 14.5 Consensus size: 41
8072667 TTTTGCCGAA
* * * *
8072677 GCTCCTCTAAACAGAGACTCAACGACTTTTG-AAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
*
8072718 GCTCCTCTCAACAGAGGTACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
8072759 GCTCCTCTCAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
8072800 GCTCATCTTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTC-TCAACAGAGGCACCACGACTTTGAAAAGTAAATT
* *
8072842 GCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTT-GAAAAGTAAATT
* * *
8072884 GCTCCTCTAAACAGAGGCA--ACGGAACTTTGGAAATTAAATT
1 GCTCCTCTCAACAGAGGCACCAC-G-ACTTTGAAAAGTAAATT
8072925 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
8072966 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
8073007 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
8073048 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
8073089 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
8073130 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
* *
8073171 GCTCCTCTAAACAGAGGTACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
8073212 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGATAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAG-TAAATT
*
8073254 GCTCCTCTAAACAGAGGCA
1 GCTCCTCTCAACAGAGGCA
8073273 ACGGAACTTT
Statistics
Matches: 521, Mismatches: 26, Indels: 15
0.93 0.05 0.03
Matches are distributed among these distances:
40 6 0.01
41 416 0.80
42 97 0.19
43 2 0.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (41 bp):
GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:8074538 original size:19 final size:18
Alignment explanation
Indices: 8074516--8074586 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 18
8074506 CTTTTTTTCA
8074516 TTTTCTCATTTTTTCCTTT
1 TTTTCTCATTTTTT-CTTT
*
8074535 TTTTTTCTATTTTTTTCTTT
1 TTTTCTC-A-TTTTTTCTTT
* * *
8074555 TTTTTTCATCATCTTCTTT
1 TTTTCTCAT-TTTTTCTTT
8074574 TTTTCTCATTTTT
1 TTTTCTCATTTTT
8074587 CATCCATTGT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
18 3 0.07
19 22 0.51
20 12 0.28
21 6 0.14
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTCTCATTTTTTCTTT
Found at i:8074546 original size:20 final size:21
Alignment explanation
Indices: 8074516--8074566 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 21
8074506 CTTTTTTTCA
8074516 TTTTCTCATTTTTTCCTTTTT
1 TTTTCTCATTTTTTCCTTTTT
*
8074537 TTTTCT-ATTTTTTTCTTTTT
1 TTTTCTCATTTTTTCCTTTTT
8074557 TTTTCATCAT
1 TTTTC-TCAT
8074567 CTTCTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 18 0.67
21 7 0.26
22 2 0.07
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTCTCATTTTTTCCTTTTT
Found at i:8074968 original size:1 final size:1
Alignment explanation
Indices: 8074962--8074998 Score: 56
Period size: 1 Copynumber: 37.0 Consensus size: 1
8074952 TTTTGTGGTG
* *
8074962 TTTTTTTTTTTTTTCTCTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8074999 CAAAAATTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.05, G:0.00, T:0.95
Consensus pattern (1 bp):
T
Found at i:8078530 original size:152 final size:153
Alignment explanation
Indices: 8078254--8078545 Score: 523
Period size: 152 Copynumber: 1.9 Consensus size: 153
8078244 TTTACCAAGT
* *
8078254 AATTAGTTGTTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
1 AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
* *
8078319 CTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTTAT
66 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAAT
8078384 TAAA-AAAAATACAAAATCATCC
131 TAAAGAAAAATACAAAATCATCC
8078406 AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
1 AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
* *
8078471 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGTAGAGGCTCTGTCGTCGGATTAAT
66 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAAT
8078536 TAAAGAAAAA
131 TAAAGAAAAA
8078546 AGAAAAAAAA
Statistics
Matches: 133, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
152 128 0.96
153 5 0.04
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (153 bp):
AATTAATTATTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAAT
TAAAGAAAAATACAAAATCATCC
Found at i:8079022 original size:20 final size:20
Alignment explanation
Indices: 8078997--8079034 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
8078987 CGAAAATTCA
8078997 CCGGTTTCTGGGATTCTTTG
1 CCGGTTTCTGGGATTCTTTG
8079017 CCGGTTTCTGGGATTCTT
1 CCGGTTTCTGGGATTCTT
8079035 CGTCGAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.05, C:0.21, G:0.29, T:0.45
Consensus pattern (20 bp):
CCGGTTTCTGGGATTCTTTG
Done.