Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 40 of 147
Found at i:8079622 original size:3 final size:3
Alignment explanation
Indices: 8079614--8079642 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8079604 ATCTTACAAA
8079614 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8079643 ATATATAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8081418 original size:17 final size:18
Alignment explanation
Indices: 8081384--8081419 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8081374 AGAATAAAAT
8081384 AGTATATTGTTGGAATTA
1 AGTATATTGTTGGAATTA
8081402 AGTATATTGTT-GAATTA
1 AGTATATTGTTGGAATTA
8081419 A
1 A
8081420 AAGTATGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.36, C:0.00, G:0.19, T:0.44
Consensus pattern (18 bp):
AGTATATTGTTGGAATTA
Found at i:8082198 original size:29 final size:28
Alignment explanation
Indices: 8082117--8082212 Score: 77
Period size: 31 Copynumber: 3.3 Consensus size: 28
8082107 TCTTGTATTT
* ** *
8082117 ATACAAAATTCAAATTTTGGTCCCTATA
1 ATACAAAATTTAAATTTAAGTCCATATA
* *
8082145 CTAGCATGAAATTTAAATTTAAGTCCTTATA
1 ATA-CA--AAATTTAAATTTAAGTCCATATA
*
8082176 CTCACAAAATTTGAAATTT-AGTCCATATA
1 AT-ACAAAATTT-AAATTTAAGTCCATATA
8082205 ATACAAAA
1 ATACAAAA
8082213 AAATTGGTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
28 8 0.14
29 18 0.32
30 6 0.11
31 23 0.41
32 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (28 bp):
ATACAAAATTTAAATTTAAGTCCATATA
Found at i:8082213 original size:29 final size:29
Alignment explanation
Indices: 8082153--8082212 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
8082143 TACTAGCATG
* *
8082153 AAATTTAAATTTAAGTCCTTATACTCACA
1 AAATTTAAATTTAAGTCCATATAATCACA
8082182 AAATTTGAAATTT-AGTCCATATAAT-ACA
1 AAATTT-AAATTTAAGTCCATATAATCACA
8082210 AAA
1 AAA
8082213 AAATTGGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 6 0.21
29 16 0.57
30 6 0.21
ACGTcount: A:0.47, C:0.13, G:0.05, T:0.35
Consensus pattern (29 bp):
AAATTTAAATTTAAGTCCATATAATCACA
Found at i:8084105 original size:21 final size:21
Alignment explanation
Indices: 8084075--8084115 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8084065 GATAAAATGA
* *
8084075 GATTAATTATTTTAATAATAT
1 GATTAATTATTATAACAATAT
*
8084096 GATTAGTTATTATAACAATA
1 GATTAATTATTATAACAATA
8084116 ATATTAAAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.46
Consensus pattern (21 bp):
GATTAATTATTATAACAATAT
Found at i:8084267 original size:25 final size:26
Alignment explanation
Indices: 8084238--8084286 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
8084228 TAAAAATTTA
*
8084238 AATTATTTAATAGTTA-TAAATTAAT
1 AATTAATTAATAGTTATTAAATTAAT
*
8084263 AATTAATTAATATTTATTAAATTA
1 AATTAATTAATAGTTATTAAATTA
8084287 CTTTTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
AATTAATTAATAGTTATTAAATTAAT
Found at i:8084718 original size:167 final size:166
Alignment explanation
Indices: 8084423--8084751 Score: 464
Period size: 167 Copynumber: 2.0 Consensus size: 166
8084413 GAAAAAAAAT
* * * *
8084423 AATTATAGGGATATTGCTATCTTTTTAATATAATGAGTATGGCAAGAAAGGAAAAAAATCCAACA
1 AATTATAGGGATAATGCTATCTTTGTAATAAAATGAGCATGGCAAGAAAGGAAAAAAATCCAACA
*
8084488 TTGATGGTCATTTCTCAATAGCAAAAATTTTTACCTAAAGGAAAGAAGTTACGATGCGGTTAATT
66 TTGATGGTCATTTCTCAATAGCAAAAATTTTTACCTAAAGAAAAGAAGTTACGATGCGGTTAATT
*
8084553 GGTTCAACTGCAGTGTTATCATGATATCCAAAATTA
131 GGTTCAACTGAAGTGTTATCATGATATCCAAAATTA
* * *
8084589 AATTATAGGGATAATGTTATCTTTGTAATAAAATGTGCATGGCAAGAAAGGAAAAAAAATTTCAA
1 AATTATAGGGATAATGCTATCTTTGTAATAAAATGAGCATGGCAAGAAAGG-AAAAAAA-TCCAA
* * * * * *
8084654 CGTTGATGGTCA-TTCTCAATATG-AACAATTTTTCCCTAAAGAAAATAAGTTACGGTGTGGTTA
64 CATTGATGGTCATTTCTCAATA-GCAAAAATTTTTACCTAAAGAAAAGAAGTTACGATGCGGTTA
* *
8084717 ATTGGTTCAATTGAAGTGTTATCTTGATATCCAAA
128 ATTGGTTCAACTGAAGTGTTATCATGATATCCAAA
8084752 CAGATTTTCA
Statistics
Matches: 143, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
166 45 0.31
167 82 0.57
168 16 0.11
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (166 bp):
AATTATAGGGATAATGCTATCTTTGTAATAAAATGAGCATGGCAAGAAAGGAAAAAAATCCAACA
TTGATGGTCATTTCTCAATAGCAAAAATTTTTACCTAAAGAAAAGAAGTTACGATGCGGTTAATT
GGTTCAACTGAAGTGTTATCATGATATCCAAAATTA
Found at i:8094613 original size:18 final size:18
Alignment explanation
Indices: 8094583--8094631 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
8094573 TTAATTTATG
8094583 TTTATTAA-T-TAAAAAA
1 TTTATTAATTATAAAAAA
8094599 TTTATTAATTATAAAAAA
1 TTTATTAATTATAAAAAA
*
8094617 TTTATAAATATATAA
1 TTTATTAAT-TATAA
8094632 TTTCGATCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 8 0.28
17 1 0.03
18 15 0.52
19 5 0.17
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TTTATTAATTATAAAAAA
Found at i:8094945 original size:14 final size:15
Alignment explanation
Indices: 8094928--8094960 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8094918 TTTATTCATC
8094928 AAATAATA-TTTAAT
1 AAATAATATTTTAAT
*
8094942 AAATCATATTTTAAT
1 AAATAATATTTTAAT
8094957 AAAT
1 AAAT
8094961 TTTTATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
AAATAATATTTTAAT
Found at i:8106623 original size:14 final size:14
Alignment explanation
Indices: 8106606--8106717 Score: 52
Period size: 15 Copynumber: 7.6 Consensus size: 14
8106596 CATTAAATTA
8106606 AATATTAATTTAAT
1 AATATTAATTTAAT
8106620 AATATTAAATATTAA-
1 AATATT-AAT-TTAAT
* *
8106635 ATTATTTATATTCAA-
1 AATA-TTA-ATTTAAT
* *
8106650 ATTAGTTGAATATTATT
1 AATA-TT-AAT-TTAAT
8106667 AA-ATATAATTTAAT
1 AATAT-TAATTTAAT
* *
8106681 AATATTAA-ATATT
1 AATATTAATTTAAT
8106694 CAATATTCAATTTAAT
1 -AATATT-AATTTAAT
8106710 AATATTAA
1 AATATTAA
8106718 AAATTAATTA
Statistics
Matches: 75, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
13 3 0.04
14 23 0.31
15 32 0.43
16 16 0.21
17 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (14 bp):
AATATTAATTTAAT
Found at i:8106626 original size:21 final size:21
Alignment explanation
Indices: 8106602--8106859 Score: 145
Period size: 21 Copynumber: 12.0 Consensus size: 21
8106592 ACTTCATTAA
8106602 ATTAAATATTAATTTAATAAT
1 ATTAAATATTAATTTAATAAT
* * *
8106623 ATTAAATATTAAATTATTTAT
1 ATTAAATATTAATTTAATAAT
* * * *
8106644 ATTCAA-ATTAGTTGAATATT
1 ATTAAATATTAATTTAATAAT
8106664 ATTAAATA-TAATTTAATAAT
1 ATTAAATATTAATTTAATAAT
8106684 ATTAAATATTCAATATTCAATTTAAT
1 ATTAAATATT-AAT-TT-AA--TAAT
* * * *
8106710 AATATTAAAAATTAATTAAATCAT
1 -AT-TAAA-TATTAATTTAATAAT
*
8106734 ATTAAATGTTAATTTAATAAT
1 ATTAAATATTAATTTAATAAT
*
8106755 ATTTTAATA-T--TTTAATAAT
1 A-TTAAATATTAATTTAATAAT
* * *
8106774 ATTTTAATATTAA-TTATTTCAT
1 A-TTAAATATTAATTTA-ATAAT
* * *
8106796 ATAAAATTTTTAATATT-TTAAT
1 ATTAAA-TATTAAT-TTAATAAT
*
8106818 ATTAAATATTAATTTAACAAT
1 ATTAAATATTAATTTAATAAT
*
8106839 ATTTAATATT-ATGTTAATAAT
1 ATTAAATATTAAT-TTAATAAT
8106860 GTTTTCATAT
Statistics
Matches: 180, Mismatches: 37, Indels: 40
0.70 0.14 0.16
Matches are distributed among these distances:
19 18 0.10
20 35 0.19
21 69 0.38
22 29 0.16
23 4 0.02
24 7 0.04
26 6 0.03
27 3 0.02
28 6 0.03
29 3 0.02
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTAAATATTAATTTAATAAT
Found at i:8106764 original size:29 final size:29
Alignment explanation
Indices: 8106732--8106927 Score: 122
Period size: 29 Copynumber: 7.2 Consensus size: 29
8106722 TAATTAAATC
*
8106732 ATATTAAATGTTAATTTAATAATATTTTA
1 ATATTAAATATTAATTTAATAATATTTTA
* *
8106761 ATATTTTAATAAT-ATTT--TAATA--TTA
1 ATA-TTAAATATTAATTTAATAATATTTTA
** * *
8106786 ATTATTTCATATAAAATTT-TTAATATTTTA
1 A-TATTAAATAT-TAATTTAATAATATTTTA
*
8106816 ATATTAAATATTAATTTAACAATA-TTTA
1 ATATTAAATATTAATTTAATAATATTTTA
* * *
8106844 ATA-T---TA-T--GTTAATAATGTTTTC
1 ATATTAAATATTAATTTAATAATATTTTA
8106866 ATATTAAATATTAATTTAATAATATTTTA
1 ATATTAAATATTAATTTAATAATATTTTA
*
8106895 GTATTACAA-ATT-ATTT--TAATATTTTA
1 ATATTA-AATATTAATTTAATAATATTTTA
8106921 ATATTAA
1 ATATTAA
8106928 TTTAGTAATA
Statistics
Matches: 130, Mismatches: 20, Indels: 38
0.69 0.11 0.20
Matches are distributed among these distances:
21 7 0.05
22 6 0.05
23 2 0.02
24 2 0.02
25 11 0.08
26 19 0.15
27 11 0.08
28 21 0.16
29 39 0.30
30 12 0.09
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (29 bp):
ATATTAAATATTAATTTAATAATATTTTA
Found at i:8106769 original size:90 final size:88
Alignment explanation
Indices: 8106606--8106776 Score: 204
Period size: 90 Copynumber: 1.9 Consensus size: 88
8106596 CATTAAATTA
* * * * *
8106606 AATATTAATTTAATAATATTAAATATTAAATTATTTATATTCAAATTAGTTGAATATTATTAAAT
1 AATATTAATTTAATAATATTAAAAATTAAATTAATCATATTCAAATTAATTGAATAATATTAAAT
8106671 ATAATTTAATAATATTAAATATTC
66 AT-ATTTAATAATATTAAATATTC
*
8106695 AATATTCAATTTAATAATATTAAAAATT-AATTAAATCATATT-AAATGTTAATTTAATAATATT
1 AATATT-AATTTAATAATATTAAAAATTAAATT-AATCATATTCAAA--TTAATTGAATAATA-T
*
8106758 TTAATAT-TTTAATAATATT
61 TAAATATATTTAATAATATT
8106777 TTAATATTAA
Statistics
Matches: 70, Mismatches: 7, Indels: 9
0.81 0.08 0.10
Matches are distributed among these distances:
89 13 0.19
90 39 0.56
91 11 0.16
92 7 0.10
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (88 bp):
AATATTAATTTAATAATATTAAAAATTAAATTAATCATATTCAAATTAATTGAATAATATTAAAT
ATATTTAATAATATTAAATATTC
Found at i:8106787 original size:36 final size:36
Alignment explanation
Indices: 8106742--8106923 Score: 97
Period size: 36 Copynumber: 4.9 Consensus size: 36
8106732 ATATTAAATG
8106742 TTAAT-TTAATAATATTTTAATATTTTAATAATATT
1 TTAATATTAATAATATTTTAATATTTTAATAATATT
* *
8106777 TTAATATTAATTAT-TTCATATAAAATTTT--TAATATT
1 TTAATATTAATAATATT--T-TAATATTTTAATAATATT
* * * * *
8106813 TTAATATTAAATATTAATTTAACAATATTTAATATTATG
1 TTAATATT-AATAATATTTTAA-TAT-TTTAATAATATT
** * *
8106852 TTAATAATGTTTTCATA-TTAAATATTAATTTAATAATATT
1 TTAAT-AT-TAATAATATTTTAATA-T--TTTAATAATATT
*
8106892 TTAGTATTACA-AATTATTTTAATATTTTAATA
1 TTAATATTA-ATAA-TATTTTAATATTTTAATA
8106924 TTAATTTAGT
Statistics
Matches: 110, Mismatches: 20, Indels: 32
0.68 0.12 0.20
Matches are distributed among these distances:
35 10 0.09
36 26 0.24
37 15 0.14
38 12 0.11
39 20 0.18
40 26 0.24
41 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (36 bp):
TTAATATTAATAATATTTTAATATTTTAATAATATT
Found at i:8106856 original size:105 final size:104
Alignment explanation
Indices: 8106709--8107031 Score: 252
Period size: 105 Copynumber: 3.1 Consensus size: 104
8106699 TTCAATTTAA
* * * *
8106709 TAATATTAAAAATTAATTAAATC-ATATTAAATGTTAAT-TTAATAATATTTTAATATTTTAATA
1 TAATATTAAATATTAATTTAA-CAATATTTAATATT-ATGTTAATAATATTTTAATATTTTAATA
*
8106772 ATATTTTAATATTAATTATTTCATATAAAATTTTTAATATTT
64 ATATTTTAATATTAA-TATTTAATATAAAATTTTTAATATTT
* * * *
8106814 TAATATTAAATATTAATTTAACAATATTTAATATTATGTTAATAATGTTTTCATA-TTAAATATT
1 TAATATTAAATATTAATTTAACAATATTTAATATTATGTTAATAATATTTTAATATTTTAATAAT
* * *
8106878 AATTTAATAAT-AT-TTTAGTATTACAAATTATTTTAATATTT
66 ATTTTAATATTAATATTTAATA-TA-AAA-T-TTTTAATATTT
* * * * * *
8106919 TAATATTAATTTAGTAATATTTTAATATTATTTAACTA--ATGTT-ATCATATTTTATTATTTTA
1 TAATATTAA---A-TATTAATTTAACAATATTTAA-TATTATGTTAATAATATTTTAATATTTTA
* * *
8106981 A-AATAATTTAAATATTCAATA-TTAATATAATAATTTTAAAAATTT
61 ATAAT-ATTTTAATATT-AATATTTAATATAA-AATTTTTAATATTT
8107026 TAATAT
1 TAATAT
8107032 GAAGTTAATA
Statistics
Matches: 173, Mismatches: 28, Indels: 32
0.74 0.12 0.14
Matches are distributed among these distances:
101 5 0.03
102 3 0.02
103 4 0.02
104 20 0.12
105 64 0.37
107 27 0.16
108 20 0.12
109 21 0.12
110 9 0.05
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (104 bp):
TAATATTAAATATTAATTTAACAATATTTAATATTATGTTAATAATATTTTAATATTTTAATAAT
ATTTTAATATTAATATTTAATATAAAATTTTTAATATTT
Found at i:8106875 original size:50 final size:49
Alignment explanation
Indices: 8106806--8106958 Score: 170
Period size: 50 Copynumber: 3.1 Consensus size: 49
8106796 ATAAAATTTT
*
8106806 TAATATTTTAATATTAAATATTAATTTAACAATATTTAATATTATGTTAA
1 TAATATTTTAATATTAAATATTAATTTAATAATATTTAATATTAT-TTAA
* * *
8106856 TAATGTTTTCATATTAAATATTAATTTAATAATATTT--TAGTA-TTACA
1 TAATATTTTAATATTAAATATTAATTTAATAATATTTAATATTATTTA-A
* *
8106903 -AATTATTTTAATATTTTAATATTAATTTAGTAATATTTTAATATTATTTAA
1 TAA-TATTTTAATA-TTAAATATTAATTTAATAATA-TTTAATATTATTTAA
8106954 CTAAT
1 -TAAT
8106959 GTTATCATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
46 5 0.06
47 9 0.11
48 23 0.27
49 3 0.04
50 34 0.40
51 5 0.06
52 4 0.05
53 2 0.02
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (49 bp):
TAATATTTTAATATTAAATATTAATTTAATAATATTTAATATTATTTAA
Found at i:8106986 original size:99 final size:96
Alignment explanation
Indices: 8106809--8106990 Score: 244
Period size: 99 Copynumber: 1.9 Consensus size: 96
8106799 AAATTTTTAA
*
8106809 TATTTTAATATTAAATATTAATTTAACAATATTTAATATTATGTTAATAATGTTTTCATATTAAA
1 TATTTTAATATTAAATATTAATTTAACAATATTTAATATTATGTTAATAATGTTATCATATT-AA
8106874 TATTAATTTAATAATATTTTAGTATTACAAAT
65 TATTAATTTAATAATATTTTAGTATTACAAAT
* **
8106906 TATTTTAATATTTTAATATTAATTTAGTAATATTTTAATATTAT-TTAACTAATGTTATCATATT
1 TATTTTAATA-TTAAATATTAATTTAACAATA-TTTAATATTATGTTAA-TAATGTTATCATATT
* * *
8106970 -TTATTATTTTAA-AATAATTTA
63 AATATTAATTTAATAATATTTTA
8106991 AATATTCAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
96 8 0.11
97 20 0.27
98 22 0.29
99 25 0.33
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (96 bp):
TATTTTAATATTAAATATTAATTTAACAATATTTAATATTATGTTAATAATGTTATCATATTAAT
ATTAATTTAATAATATTTTAGTATTACAAAT
Found at i:8107057 original size:26 final size:24
Alignment explanation
Indices: 8107028--8107076 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
8107018 AAAAATTTTA
8107028 ATATGAAGTTAATAATATTTTATTAG
1 ATATGAAGTTAA-AAT-TTTTATTAG
* *
8107054 ATATTAATTTAAAATTTTTATTA
1 ATATGAAGTTAAAATTTTTATTA
8107077 TATTATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (24 bp):
ATATGAAGTTAAAATTTTTATTAG
Found at i:8107097 original size:24 final size:25
Alignment explanation
Indices: 8107025--8107125 Score: 82
Period size: 28 Copynumber: 4.0 Consensus size: 25
8107015 TTTAAAAATT
* *
8107025 TTAATATGAAGTTAATAATATTTTA
1 TTAATATTAATTTAATAATATTTTA
8107050 TTAGATATTAATTTAA-AAT-TTTTA
1 TTA-ATATTAATTTAATAATATTTTA
*
8107074 TT-ATATTATTTTAATAATAGTTTATAA
1 TTAATATTAATTTAATAATA-TTT-T-A
** * *
8107101 GAAATATTGATTTAATAAAATTTTA
1 TTAATATTAATTTAATAATATTTTA
8107126 AATTATTTAA
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
22 11 0.18
23 3 0.05
24 7 0.11
25 10 0.16
26 12 0.20
27 4 0.07
28 14 0.23
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (25 bp):
TTAATATTAATTTAATAATATTTTA
Found at i:8110811 original size:33 final size:33
Alignment explanation
Indices: 8110769--8110872 Score: 86
Period size: 33 Copynumber: 3.1 Consensus size: 33
8110759 TTTTAAGGAT
* *
8110769 AAATGCTGCTAATTTATTAGCATTTATATAAAA
1 AAATACTGCTAATTTAATAGCATTTATATAAAA
* * *
8110802 AAATACTGCTAAATTAGT-GACATGTATATAAATA
1 AAATACTGCTAATTTAATAG-CATTTATATAAA-A
* * *
8110836 AAATA-TCGCTCTATTTAATAGCATTTGTATTAAA
1 AAATACT-GCT-AATTTAATAGCATTTATATAAAA
8110870 AAA
1 AAA
8110873 GGCCATTAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
32 1 0.02
33 27 0.48
34 13 0.23
35 14 0.25
36 1 0.02
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.37
Consensus pattern (33 bp):
AAATACTGCTAATTTAATAGCATTTATATAAAA
Found at i:8112388 original size:161 final size:159
Alignment explanation
Indices: 8112191--8114260 Score: 1572
Period size: 161 Copynumber: 13.0 Consensus size: 159
8112181 ACATTTTGCC
* * * * * *
8112191 TTTTCATACATATCAA-TCATGAAAATCAAATTCAATCATTTGGATAAGTGTAATATCATATATT
1 TTTTCACACATATCAACT-GTGAAAA-CAAGTTCAATCATTTAGATAAGTTTAATATCATGTATT
* * * * *
8112255 GAAGCTATCAAAACTGTTAAAACATAACAATAATAGCAATTTTGTATTTTTTCTTTTTAATGGCA
64 GAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTTCCTTTTAATGGCA
* *
8112320 CAAAAAGTCCTAAACAGAGGTAAACATCAACT
129 TAAAAAGTCCTAAACAGACGTAAACAT-AACT
* * *
8112352 TTTTCATATATATCAACTGTGAAAATCAAGTTCAATCATTT-GAAAAAGTTTAATATCATGTATT
1 TTTTCACACATATCAACTGTGAAAA-CAAGTTCAATCATTTAG-ATAAGTTTAATATCATGTATT
* * * * *
8112416 GAAGTTATCCAAATTGTTAAAACAGAACAATAATAGCAAATTTGTATTTTTGCCTTTTAATGGTA
64 GAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTTCCTTTTAATGGCA
* * * *
8112481 TAAAAAATCCTAAACAAAGGTAAACAAAAACT
129 TAAAAAGTCCTAAACAGACGTAAAC-ATAACT
* * * * * * * *
8112513 TTTTCAGATATATTAACTATAAAAACCAGGTTCAATCATTTCAAAAAAGTTTAATATCATGTATT
1 TTTTCACACATATCAACTGTGAAAA-CAAGTTCAATCATTT-AGATAAGTTTAATATCATGTATT
* * * *
8112578 GAAGCCATCCAAATTGTTAAAATAGAATAATAATAGCAAATTTGTATTTGTAT-CTTTTAATGGC
64 GAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTT-TTTCCTTTTAATGGC
* * **
8112642 A-AAAATAGTCCTAAATAGATGTAATTGATAACT
128 ATAAAA-AGTCCTAAACAGACGTAA-ACATAACT
* * * * * * * *
8112675 TTTTCACACATTTCTACTGTGGAAACCAAGTTTAATCATTCAGACAAGTTTATTATTATGTATTG
1 TTTTCACACATATCAACTGT-GAAAACAAGTTCAATCATTTAGATAAGTTTAATATCATGTATTG
* * * * *
8112740 AAGCTATCCAAATTGTTAAAATAGGAA-AA-AATAGTAAATTTGCATTTTTACCTTTTAACGGCA
65 AAGCTATCCAAACTGTTAAAATA-GAACAATAATAGCAAATTTGTATTTTTTCCTTTTAATGGCA
* * ** *
8112803 TAAAAAGTCTTAAACA-ATGTAAATGTTAGCT
129 TAAAAAGTCCTAAACAGACGTAAA-CATAACT
* * * * *
8112834 TTTTCACATATATCAATTGTGAAAACTAAGTTCAATCATTCAAAAAAGTTTAATATCATGTATTG
1 TTTTCACACATATCAACTGTGAAAAC-AAGTTCAATCATTTAGATAAGTTTAATATCATGTATTG
* * * * *
8112899 AAGCCATCCAAATTGTTAAAATAGAATAATAATA-AAAATTTTGTATTTTTACCTTTTAATGGCA
65 AAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAA-TTTGTATTTTTTCCTTTTAATGGCA
* * *
8112963 -AAAATAGTCCTAAATAGACGAAAACGATGACT
129 TAAAA-AGTCCTAAACAGACGTAAAC-ATAACT
* * * * *
8112995 TTTTCACACATATCAACTGTAGAAACCAAGTTCAATCATTTGGACAAATTTATTATCATGTATTG
1 TTTTCACACATATCAACTGT-GAAAACAAGTTCAATCATTTAGATAAGTTTAATATCATGTATTG
* * * * * * *
8113060 AAGTTATCCAAACTATTAAAATAGAATAATAATAGCAAATTTATAATTTTGCCTTTTAATGACAT
65 AAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTTCCTTTTAATGGCAT
* * *
8113125 AAAAAGTCCTAAACAGACAT-AACGTTAGCT
130 AAAAAGTCCTAAACAGACGTAAAC-ATAACT
* * * * *
8113155 TTTTCACACATATCGACTGTAAAAATCAAGCTT-AATTATTCA-ATCAAG-TT--TATCATATAT
1 TTTTCACACATATCAACTGTGAAAA-CAAG-TTCAATCATTTAGAT-AAGTTTAATATCATGTAT
* * * * * * * * ****
8113215 TGAAGCTATTCAAACTGTTAAAACA-AA-AAAAATTGCAATTTTGCATTATAT-CTTTTAACATT
63 TGAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTTCCTTTTAATGGC
* * **
8113277 ATAAAAAGTCCTAAACAAACGTAAACGCTAGTTT
128 ATAAAAAGTCCTAAACAGACGTAAAC-ATA-ACT
* * * * * * * *
8113311 TTTTCACACATATTAATTATGGAAACCAAGTTTAATTATTTTGATAAGTTTAATATTATGTATTG
1 TTTTCACACATATCAACTGT-GAAAACAAGTTCAATCATTTAGATAAGTTTAATATCATGTATTG
* * * * * ** * * * * *
8113376 AAGCTATGCAAACTATTAAAACAGAACAATTACAATAAATTTGCATTTTTTACTCTTAATAGCAC
65 AAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTTCCTTTTAATGGCAT
* * **
8113441 AAAAAGTCTTAAACAAATATAAACGATAACT
130 AAAAAGTCCTAAACAGACGTAAAC-ATAACT
* ** * * * * *
8113472 TTTTTATTCATATCAACTATGAAAACTATGTTCAATCATTCAGACAAGTTTAATATCATGCATTG
1 TTTTCACACATATCAACTGTGAAAAC-AAGTTCAATCATTTAGATAAGTTTAATATCATGTATTG
** * * * * *
8113537 AAGCTATTGAAATTGTTAAAATAGAACAATAATAACAAATTTGCA-TTTTACCTTTTAACGGCAT
65 AAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTTCCTTTTAATGGCAT
* * * * *
8113601 AAAAAGTCTTAAACAAATGTAAACGTTACT
130 AAAAAGTCCTAAACAGACGTAAACATAACT
* * **
8113631 TTTTCACATATATCAACTGTGAAAACTAAGTTCAATTATTCCGATAAGTTTAATATCATG--TTG
1 TTTTCACACATATCAACTGTGAAAAC-AAGTTCAATCATTTAGATAAGTTTAATATCATGTATTG
* * * * * * * **
8113694 AAGCTATTCAAACTGTTAAAATATAACAGTAACAACAAATTTGTATTTTTGT-CTCTCAACAGCA
65 AAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTT-TCCTTTTAATGGCA
* * * *
8113758 CAAAAAGTCATAAACAGATGTAAATGATAACT
129 TAAAAAGTCCTAAACAGACGTAAA-CATAACT
* * ** ** * *
8113790 TTTTGACACATATCAATTGTGAAAAC--CCTCAATCATTCGGATAAGTTTAATATCATATATTAA
1 TTTTCACACATATCAACTGTGAAAACAAGTTCAATCATTTAGATAAGTTTAATATCATGTATTGA
* * * *
8113853 AGCTATCCAAACTGTTAAAATAGAACAATAATAACAAA-TT-TATTTTTTAACCTATTAACGACA
66 AGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTT--CCTTTTAATGGCA
* * *
8113916 CAAAAAGTCCTAAATAGACGTAAACGATAATT
129 TAAAAAGTCCTAAACAGACGTAAAC-ATAACT
* * ** * * *
8113948 TTTTTATACATATCAACCATGAAAACTAAGTTCAATAATTTGGATAAATTTAATATCATGTATTG
1 TTTTCACACATATCAACTGTGAAAAC-AAGTTCAATCATTTAGATAAGTTTAATATCATGTATTG
* * * * * * * *
8114013 AAGCTATTCAAACTGTTAAAACATAACAACAACAGCAAATTTGTATTTTTGCATTTTAACGGCAT
65 AAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTTCCTTTTAATGGCAT
* * *
8114078 AAAAAGTCCTAAATAAACATAAACAATAACT
130 AAAAAGTCCTAAACAGACGTAAAC-ATAACT
** * * * * *
8114109 TTTTCTTATATATCAA-TCGT-AAAATCGAAGTTCAATTATTTAAACAAGTTTAATATAATGTAT
1 TTTTCACACATATCAACT-GTGAAAA-C-AAGTTCAATCATTTAGATAAGTTTAATATCATGTAT
* * * * * * * * * ***
8114172 TGAAACTATCAAAATTATTAACATAGAATAATAACTA-TAAA-TTGTATTTTTACCTTTGAACAA
63 TGAAGCTATCCAAACTGTTAAAATAGAACAATAA-TAGCAAATTTGTATTTTTTCCTTTTAATGG
*
8114235 CATAAAAAGTCCTAAACAGACATAAA
127 CATAAAAAGTCCTAAACAGACGTAAA
8114261 TTGCAAATAA
Statistics
Matches: 1544, Mismatches: 310, Indels: 111
0.79 0.16 0.06
Matches are distributed among these distances:
154 27 0.02
155 24 0.02
156 66 0.04
157 81 0.05
158 134 0.09
159 211 0.14
160 199 0.13
161 617 0.40
162 174 0.11
163 11 0.01
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (159 bp):
TTTTCACACATATCAACTGTGAAAACAAGTTCAATCATTTAGATAAGTTTAATATCATGTATTGA
AGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTTTCCTTTTAATGGCATA
AAAAGTCCTAAACAGACGTAAACATAACT
Found at i:8113953 original size:476 final size:475
Alignment explanation
Indices: 8112233--8114148 Score: 1655
Period size: 477 Copynumber: 4.0 Consensus size: 475
8112223 CAATCATTTG
* * *
8112233 GATAAGTGTAATATCATATATTGAAGCTA-TCAAAACTGTTAAAACATAACAATAATAGCAATTT
1 GATAAGTTTAATATC--ATATTGAAGCTATTC-AAACTGTTAAAACATAA-AAAAATAGCAAATT
* ** * * *
8112297 TGTATTTTT-TCTTTTTAATGGCACAAAAAGTCCTAAACAGAGGTAAA-CATCAACTTTTTCATA
62 TGCATTTTTATC-TTTTAACAGCACAAAAAGTCCTAAACAGATGTAAATGAT-AACTTTTTCACA
* * * * *
8112360 TATATCAACTGTGAAAATCAAGTTCAATCATTTGAAAAAGTTTAATATCATGTATTGAAGTTATC
125 CATATCAATTGTGAAAA-C-ACTTCAATCATTCGAAAAAGTTTAATATCATGTATTGAAGCTATC
* * * * ** * *
8112425 CAAATTGTTAAAACAGAACAATAATAGCAAATTTGTATTTTTGCCTTTTAATGGTATAAAAAATC
188 CAAACTGTTAAAACAGAACAATAATAACAAATTTATATTTTTACCTTTTAATGACACAAAAAGTC
* * * * * * * *
8112490 CTAAACAAAGGTAAACAAAAACTTTTTCAGATATATTAACTATAAAAACCAGGTTCAATCATTTC
253 CTAAACAAACGTAAACGATAACTTTTTCATACATATCAACTATGAAAACCAAGTTCAATCA-TTC
* * * *
8112555 A-AAAAAGTTTAATATCATGTATTGAAGCCATCCAAATTGTTAAAATAGAATAATAATAGCAAAT
317 AGACAAA-TTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAAT
* * * * ** **
8112619 TTGTATTTGTATCTTTTAATGGCA-AAAATAGTCCTAAATAGATGTAATTGATAACTTTTTCACA
381 TTGTATTT-TACCTTTTAACGGCATAAAA-AGTCCTAAACAAACATAAACG-TAACTTTTTCACA
* * * * * * *
8112683 CATTTCTACTGTGGAAACCAAGTTTAATCATTCA
443 CATATCAACTGT-AAAACTAAGTTCAATTATTCC
* * * * * * ** *
8112717 GACAAGTTTATTATTATGTATTGAAGCTATCCAAATTGTTAAAATAGGAAAAAATAGTAAATTTG
1 GATAAGTTTAATATCA--TATTGAAGCTATTCAAACTGTTAAAACATAAAAAAATAGCAAATTTG
* * * * * * *
8112782 CATTTTTACCTTTTAACGGCATAAAAAGTCTTAAACA-ATGTAAATGTTAGCTTTTTCACATATA
64 CATTTTTATCTTTTAACAGCACAAAAAGTCCTAAACAGATGTAAATGATAACTTTTTCACACATA
* * *
8112846 TCAATTGTGAAAACTAAGTTCAATCATTCAAAAAAGTTTAATATCATGTATTGAAGCCATCCAAA
129 TCAATTGTGAAAAC--ACTTCAATCATTCGAAAAAGTTTAATATCATGTATTGAAGCTATCCAAA
* * * * *
8112911 TTGTTAAAATAGAATAATAATAA-AAATTTTGTATTTTTACCTTTTAATGGCA-AAAATAGTCCT
192 CTGTTAAAACAGAACAATAATAACAAA-TTTATATTTTTACCTTTTAATGACACAAAA-AGTCCT
* * * * * * **
8112974 AAATAGACGAAAACGATGACTTTTTCACACATATCAACTGT-AGAAACCAAGTTCAATCATTTGG
255 AAACAAACGTAAACGATAACTTTTTCATACATATCAACTATGA-AAACCAAGTTCAATCATTCAG
* * * * *
8113038 ACAAATTTATTATCATGTATTGAAGTTATCCAAACTATTAAAATAGAATAATAATAGCAAATTTA
319 ACAAATTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTG
* * * * *
8113103 TAATTTTGCCTTTTAATGACATAAAAAGTCCTAAACAGACAT-AACGTTAGCTTTTTCACACATA
384 T-ATTTTACCTTTTAACGGCATAAAAAGTCCTAAACAAACATAAACG-TAACTTTTTCACACATA
* *
8113167 TCGACTGTAAAAATCAAGCTT-AATTATT-C
447 TCAACTGTAAAACT-AAG-TTCAATTATTCC
* * *
8113196 AATCAAGTTT-ATCAT-ATATTGAAGCTATTCAAACTGTTAAAACA-AAAAAAATTGCAATTTTG
1 GAT-AAGTTTAAT-ATCATATTGAAGCTATTCAAACTGTTAAAACATAAAAAAATAGCAAATTTG
* ** * * * * * **
8113258 CA-TTATATCTTTTAACATTATAAAAAGTCCTAAACAAACGTAAACGCTAGTTTTTTTCACACAT
64 CATTTTTATCTTTTAACAGCACAAAAAGTCCTAAACAGATGTAAATGATA-ACTTTTTCACACAT
* * * * * * * * * *
8113322 ATTAATTATGGAAACCAAGTTTAATTATTTTG-ATAAGTTTAATATTATGTATTGAAGCTATGCA
128 ATCAATTGT-GAAAAC-ACTTCAATCA-TTCGAAAAAGTTTAATATCATGTATTGAAGCTATCCA
* * * * *
8113386 AACTATTAAAACAGAACAATTACAATAAATTTGCAT-TTTTTA-CTCTTAAT-AGCACAAAAAGT
190 AACTGTTAAAACAGAACAATAATAACAAATTT--ATATTTTTACCTTTTAATGA-CACAAAAAGT
* ** * * * *
8113448 CTTAAACAAATATAAACGATAACTTTTTTATTCATATCAACTATGAAAACTATGTTCAATCATTC
252 CCTAAACAAACGTAAACGATAACTTTTTCATACATATCAACTATGAAAACCAAGTTCAATCATTC
* * ** * *
8113513 AGACAAGTTTAATATCATGCATTGAAGCTATTGAAATTGTTAAAATAGAACAATAATAACAAATT
317 AGACAAATTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATT
* * ** * *
8113578 TGCATTTTACCTTTTAACGGCATAAAAAGTCTTAAACAAATGTAAACGTTACTTTTTCACATATA
382 TGTATTTTACCTTTTAACGGCATAAAAAGTCCTAAACAAACATAAACGTAACTTTTTCACACATA
8113643 TCAACTGTGAAAACTAAGTTCAATTATTCC
447 TCAACTGT-AAAACTAAGTTCAATTATTCC
* * ** * * *
8113673 GATAAGTTTAATATCATGTTGAAGCTATTCAAACTGTTAAAATATAACAGTAACAACAAATTTGT
1 GATAAGTTTAATATCATATTGAAGCTATTCAAACTGTTAAAACATAA-AAAAATAGCAAATTTGC
* * * * *
8113738 ATTTTTGTCTCTCAACAGCACAAAAAGTCATAAACAGATGTAAATGATAACTTTTTGACACATAT
65 ATTTTTATCTTTTAACAGCACAAAAAGTCCTAAACAGATGTAAATGATAACTTTTTCACACATAT
* * * * *
8113803 CAATTGTGAAAAC-CCTCAATCATTCGGATAAGTTTAATATCATATATTAAAGCTATCCAAACTG
130 CAATTGTGAAAACACTTCAATCATTCGAAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTG
* * * *
8113867 TTAAAATAGAACAATAATAACAAATTTAT-TTTTTAACCTATTAACGACACAAAAAGTCCTAAAT
195 TTAAAACAGAACAATAATAACAAATTTATATTTTT-ACCTTTTAATGACACAAAAAGTCCTAAAC
* * * * * * ** *
8113931 AGACGTAAACGATAATTTTTTTATACATATCAACCATGAAAACTAAGTTCAATAATTTGGATAAA
259 AAACGTAAACGATAACTTTTTCATACATATCAACTATGAAAACCAAGTTCAATCATTCAGACAAA
* * * * *
8113996 TTTAATATCATGTATTGAAGCTATTCAAACTGTTAAAACATAACAACAACAGCAAATTTGTATTT
324 TTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTA-TT
* * * * ** *
8114061 TTGCATTTTAACGGCATAAAAAGTCCTAAATAAACATAAACAATAACTTTTTCTTATATATCAA-
388 TTACCTTTTAACGGCATAAAAAGTCCTAAACAAACATAAAC-GTAACTTTTTCACACATATCAAC
*
8114125 TCGTAAAATCGAAGTTCAATTATT
452 T-GTAAAA-CTAAGTTCAATTATT
8114149 TAAACAAGTT
Statistics
Matches: 1159, Mismatches: 230, Indels: 92
0.78 0.16 0.06
Matches are distributed among these distances:
474 7 0.01
475 34 0.03
476 284 0.25
477 302 0.26
478 62 0.05
479 36 0.03
480 76 0.07
481 93 0.08
482 184 0.16
483 44 0.04
484 36 0.03
485 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (475 bp):
GATAAGTTTAATATCATATTGAAGCTATTCAAACTGTTAAAACATAAAAAAATAGCAAATTTGCA
TTTTTATCTTTTAACAGCACAAAAAGTCCTAAACAGATGTAAATGATAACTTTTTCACACATATC
AATTGTGAAAACACTTCAATCATTCGAAAAAGTTTAATATCATGTATTGAAGCTATCCAAACTGT
TAAAACAGAACAATAATAACAAATTTATATTTTTACCTTTTAATGACACAAAAAGTCCTAAACAA
ACGTAAACGATAACTTTTTCATACATATCAACTATGAAAACCAAGTTCAATCATTCAGACAAATT
TAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTATTTTA
CCTTTTAACGGCATAAAAAGTCCTAAACAAACATAAACGTAACTTTTTCACACATATCAACTGTA
AAACTAAGTTCAATTATTCC
Found at i:8114158 original size:637 final size:631
Alignment explanation
Indices: 8112191--8114328 Score: 1939
Period size: 637 Copynumber: 3.3 Consensus size: 631
8112181 ACATTTTGCC
* * * *** * * *
8112191 TTTTCATACATATCAATCATGAAAATC-AAATTCAATCATTTGGATAAGTGTAATATCATATATT
1 TTTTCATATATATCAATCGTGAAAATCTAAGTTCAATCATTCAAACAAGTTTAATATCATGTATT
* * * * * * * *
8112255 GAAGCTATCAAAACTGTTAAAACATAACAATAATAGCAATTTTGTATTTTTTCTTTTTAATGGCA
66 GAAGCTATCAAAATTGTTAAAATAGAACAATAATAACAAATTTGTATTTTTACCTTTTAACGGCA
* * * *
8112320 CAAAAAGTCCTAAACAGAGGTAAACATCAACTTTTTCATATATATCAACTGTGAAAA-TCAAGTT
131 TAAAAAGTCCTAAACAGACGTAAACGT-AACTTTTTCACATATATCAACTGTGAAAACT-AAGTT
* * *
8112384 CAATCATTTGAAAAAGTTTAATATCATGTATTGAAGTTATCCAAATTGTTAAAACAGAACAATAA
194 CAATCATTCG-AAAAGTTTAATATCATG-ATTGAAGTTATCCAAACTGTTAAAATAGAACAATAA
* * * * * * *
8112449 TAGCAAATTTGTATTTTTGCCTTTTAATGGTATAAAAAATCCTAAACAAAGGTAAACAAAAACTT
257 TAGCAAATTTGTATTTTTGCCTTTTAA-AGCATAAAAAGTCCTAAACAGACGTAAACGATAACTT
* * * * * * *
8112514 TTTCAGATATATTAACTATAAAAACCAGGTTCAATCATTTCAAAAAAGTTTAATATCATGTATTG
321 TTTCACACATATCAACTGTAAAAACC---CTCAATCA-TTC-AATAAGTTTAATATCATATATTG
* * * * *
8112579 AAGCCATCCAAATTGTTAAAATAGAATAATAATAGCAAATTTGTATTTGT-ATCTTTTAATGGCA
381 AAGCTATCCAAACTGTTAAAATAGAA-AATAATAGCAAATTT-T-TTTTTAATCTTTTAACGACA
* ** * * * * *
8112643 AAAATAGTCCTAAATAGATGTAATTGATAACTTTTTCACACATTTCTACTGTGGAAACCAAGTTT
443 AAAA-AGTCCTAAATAGACGTAAACGATAATTTTTTTACACATATCAACTATGGAAACCAAGTTT
* * * * * * *
8112708 AATCATTCAGACAAGTTTATTATTATGTATTGAAGCTATCCAAATTGTTAAAATAGGAA-AAAAT
507 AATAATTTAGATAAGTTTAATATTATGTATTGAAGCTATCCAAACTGTTAAAACA-GAACAAAAC
* * * * * *
8112772 AGTAAATTTGCATTTTTACCTTTTAACGGCATAAAAAGTCTTAAACAATGTAAATGTTAGCT
571 AGTAAATTTGCATTTTT-CATTTTAACGGCATAAAAAGTCTTAAAAAATATAAACGATAACT
* * *
8112834 TTTTCACATATATCAATTGTGAAAA-CTAAGTTCAATCATTCAAAAAAGTTTAATATCATGTATT
1 TTTTCATATATATCAATCGTGAAAATCTAAGTTCAATCATTCAAACAAGTTTAATATCATGTATT
* * * *
8112898 GAAGCCATCCAAATTGTTAAAATAGAATAATAATAA-AAATTTTGTATTTTTACCTTTTAATGGC
66 GAAGCTATCAAAATTGTTAAAATAGAACAATAATAACAAA-TTTGTATTTTTACCTTTTAACGGC
* * * * *
8112962 A-AAAATAGTCCTAAATAGACGAAAACGATGACTTTTTCACACATATCAACTGT-AGAAACCAAG
130 ATAAAA-AGTCCTAAACAGACGTAAACG-TAACTTTTTCACATATATCAACTGTGA-AAACTAAG
* * * *
8113025 TTCAATCATTTGGACAAA-TTTATTATCATGTATTGAAGTTATCCAAACTATTAAAATAGAATAA
192 TTCAATCA-TTCGA-AAAGTTTAATATCATG-ATTGAAGTTATCCAAACTGTTAAAATAGAACAA
* * * * * *
8113089 TAATAGCAAATTTATAATTTTGCCTTTTAATGACATAAAAAGTCCTAAACAGACAT-AACGTTAG
254 TAATAGCAAATTTGTATTTTTGCCTTTTAAAG-CATAAAAAGTCCTAAACAGACGTAAACGATAA
* * * *
8113153 CTTTTTCACACATATCGACTGTAAAAATCAAGCTTAATTATTCAATCAAG-TT--TATCATATAT
318 CTTTTTCACACATATCAACTGTAAAAA-C--CCTCAATCATTCAAT-AAGTTTAATATCATATAT
* * * * *** *
8113215 TGAAGCTATTCAAACTGTTAAAACA-AAAAAAATTGC-AATTTTGCATTATATCTTTTAAC-ATT
379 TGAAGCTATCCAAACTGTTAAAATAGAAAATAATAGCAAATTTTTTTTTA-ATCTTTTAACGA-C
* * * * * *
8113277 ATAAAAAGTCCTAAACAAACGTAAACGCTAGTTTTTTTCACACATATTAATTATGGAAACCAAGT
442 A-AAAAAGTCCTAAATAGACGTAAACGATAATTTTTTT-ACACATATCAACTATGGAAACCAAGT
* * * * *
8113342 TTAATTATTTTGATAAGTTTAATATTATGTATTGAAGCTATGCAAACTATTAAAACAGAACAATT
505 TTAATAATTTAGATAAGTTTAATATTATGTATTGAAGCTATCCAAACTGTTAAAACAGAACAA-A
* * * ** *
8113407 ACAATAAATTTGCATTTTTTACTCTTAATAGCACAAAAAGTCTTAAACAAATATAAACGATAACT
569 ACAGTAAATTTGCATTTTTCA-TTTTAACGGCATAAAAAGTCTTAAA-AAATATAAACGATAACT
* * * * *
8113472 TTTTTAT-TCATATCAA-CTATGAAAA-CTATGTTCAATCATTCAGACAAGTTTAATATCATGCA
1 TTTTCATAT-ATATCAATC-GTGAAAATCTAAGTTCAATCATTCAAACAAGTTTAATATCATGTA
** *
8113534 TTGAAGCTATTGAAATTGTTAAAATAGAACAATAATAACAAATTTGCA-TTTTACCTTTTAACGG
64 TTGAAGCTATCAAAATTGTTAAAATAGAACAATAATAACAAATTTGTATTTTTACCTTTTAACGG
* * * *
8113598 CATAAAAAGTCTTAAACAAATGTAAACGTTACTTTTTCACATATATCAACTGTGAAAACTAAGTT
129 CATAAAAAGTCCTAAACAGACGTAAACGTAACTTTTTCACATATATCAACTGTGAAAACTAAGTT
* * * * * * *
8113663 CAATTATTCCGATAAGTTTAATATCATG-TTGAAGCTATTCAAACTGTTAAAATATAACAGTAAC
194 CAATCATT-CGAAAAGTTTAATATCATGATTGAAGTTATCCAAACTGTTAAAATAGAACAATAAT
* * * * * * * *
8113727 AACAAATTTGTATTTTTGTCTCTCAACAGCACAAAAAGTCATAAACAGATGTAAATGATAACTTT
258 AGCAAATTTGTATTTTTGCCTTTTAA-AGCATAAAAAGTCCTAAACAGACGTAAACGATAACTTT
* * * * *
8113792 TTGACACATATCAATTGTGAAAACCCTCAATCATTCGGATAAGTTTAATATCATATATTAAAGCT
322 TTCACACATATCAACTGTAAAAACCCTCAATCATTC-AATAAGTTTAATATCATATATTGAAGCT
* * *
8113857 ATCCAAACTGTTAAAATAGAACAATAATAACAAATTTATTTTTTAACCTATTAACGACACAAAAA
386 ATCCAAACTGTTAAAATAGAA-AATAATAGCAAATTT-TTTTTTAATCTTTTAACGACA-AAAAA
* * * * *
8113922 GTCCTAAATAGACGTAAACGATAATTTTTTTATACATATCAACCATGAAAACTAAGTTCAATAAT
448 GTCCTAAATAGACGTAAACGATAATTTTTTTACACATATCAACTATGGAAACCAAGTTTAATAAT
* * * * * *
8113987 TTGGATAAATTTAATATCATGTATTGAAGCTATTCAAACTGTTAAAACATAACAACAACAGCAAA
513 TTAGATAAGTTTAATATTATGTATTGAAGCTATCCAAACTGTTAAAACAGAACAA-AACAGTAAA
* * * *
8114052 TTTGTATTTTTGCATTTTAACGGCATAAAAAGTCCTAAATAAACATAAACAATAACT
577 TTTGCATTTTT-CATTTTAACGGCATAAAAAGTCTTAAA-AAATATAAACGATAACT
* * * * *
8114109 TTTTCTTATATATCAATCGT-AAAATCGAAGTTCAATTATTTAAACAAGTTTAATATAATGTATT
1 TTTTCATATATATCAATCGTGAAAATCTAAGTTCAATCATTCAAACAAGTTTAATATCATGTATT
* * * * * * **
8114173 GAAACTATCAAAATTATTAACATAGAATAATAACT-ATAAA-TTGTATTTTTACCTTTGAACAAC
66 GAAGCTATCAAAATTGTTAAAATAGAACAATAA-TAACAAATTTGTATTTTTACCTTTTAACGGC
* * * * **** ** * *
8114236 ATAAAAAGTCCTAAACAGACATAAATTGCAAATAACGACACATATATCAACAATGGAAACCAAGT
130 ATAAAAAGTCCTAAACAGACGTAAA-CGTAACT-TTTTCACATATATCAACTGTGAAAACTAAGT
*
8114301 TCATTCATTCGAATAAGTTTAATATCAT
193 TCAATCATTCGAA-AAGTTTAATATCAT
8114329 AAACTTACTT
Statistics
Matches: 1198, Mismatches: 248, Indels: 102
0.77 0.16 0.07
Matches are distributed among these distances:
632 12 0.01
633 5 0.00
634 70 0.06
635 106 0.09
636 142 0.12
637 318 0.27
638 192 0.16
639 52 0.04
640 4 0.00
641 6 0.01
642 40 0.03
643 244 0.20
644 7 0.01
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (631 bp):
TTTTCATATATATCAATCGTGAAAATCTAAGTTCAATCATTCAAACAAGTTTAATATCATGTATT
GAAGCTATCAAAATTGTTAAAATAGAACAATAATAACAAATTTGTATTTTTACCTTTTAACGGCA
TAAAAAGTCCTAAACAGACGTAAACGTAACTTTTTCACATATATCAACTGTGAAAACTAAGTTCA
ATCATTCGAAAAGTTTAATATCATGATTGAAGTTATCCAAACTGTTAAAATAGAACAATAATAGC
AAATTTGTATTTTTGCCTTTTAAAGCATAAAAAGTCCTAAACAGACGTAAACGATAACTTTTTCA
CACATATCAACTGTAAAAACCCTCAATCATTCAATAAGTTTAATATCATATATTGAAGCTATCCA
AACTGTTAAAATAGAAAATAATAGCAAATTTTTTTTTAATCTTTTAACGACAAAAAAGTCCTAAA
TAGACGTAAACGATAATTTTTTTACACATATCAACTATGGAAACCAAGTTTAATAATTTAGATAA
GTTTAATATTATGTATTGAAGCTATCCAAACTGTTAAAACAGAACAAAACAGTAAATTTGCATTT
TTCATTTTAACGGCATAAAAAGTCTTAAAAAATATAAACGATAACT
Found at i:8114244 original size:797 final size:789
Alignment explanation
Indices: 8112222--8114252 Score: 2167
Period size: 797 Copynumber: 2.5 Consensus size: 789
8112212 AAAATCAAAT
* * * *
8112222 TCAATCATTTGGATAAGTGTAATATCATATATTGAAGCTATCAAAACTGTTAAAACATAACAATA
1 TCAATCATTTGGATAAGTTTAATATCATATATTGAAGCTATCCAAACTGTTAAAATAGAACAATA
* * * *
8112287 ATAGCAATTTTGTATTTTTTCTTTTTAATGGCACAAAAAGTCCTAAACAGAGGTAAAC-ATCAAC
66 ATAGCAA-ATT-TATTTTTTCCTTTTAATGACACAAAAAGTCCTAAACAGACGTAAACGAT-AAC
* * * *
8112351 TTTTTCATATATATCAACTGTGAAAATCAAGTTCAATCATTTGAAAAAGTTTAATATCATGTATT
128 TTTTTCATACATATCAAC-CTGAAAATCAAGTTCAATAATTTGATAAA-TTTAATATCATGTATT
* * * * *
8112416 GAAGTTATCCAAATTGTTAAAACAGAACAATAATAGCAAATTTGTATTTTTGCCTTTTAATGGTA
191 GAAGCTATTCAAACTGTTAAAACA-AACAAAAATAGCAAATTTGTATTTTTG-CTTTTAACGGTA
* * * * *
8112481 TAAAAAATCCTAAACAAAGGTAAACAAAAACTTTTTCAGATATATTAA-CTATAAAAACCAGGTT
254 TAAAAAGTCCTAAACAAACGTAAACAATAACTTTTTCACATATATTAATC-AT-AAAACCAAGTT
* * * *
8112545 CAATCATTTCAAAAAAGTTTAATATCATGTATTGAAGCCATCCAAATTGTTAAAATAGAATAATA
317 CAATTATTT-AAAAAAGTTTAATATAATGTATTGAAGCTAT-CAAATTATTAAAATAGAATAATA
* * * * * * **
8112610 A-TAGCAAATTTGTATTTGTATCTTTTAATGGCAAAAATAGTCCTAAATAGATGTAATTGATAAC
380 ACTA-TAAATTTGTATTTTTA-C-TTTAATAGCAAAAA-AGTCCTAAACAAATATAAACGATAAC
* * * * * * * *
8112674 TTTTTCACACATTTCTACTGTGGAAACCAAGTTTAATCATTCAGACAAGTTTATTATTATGTATT
441 TTTTTCACACATATCAACTATGAAAACCAAGTTCAATCATTCAGACAAGTTTAATATCATGCATT
**
8112739 GAAGCTATCCAAATTGTTAAAATAGGAAAAAATAGTAAATTTGCATTTTTACCTTTTAACGGCAT
506 GAAGCTATCCAAATTGTTAAAATAGGAAAAAATAACAAATTTGCATTTTTACCTTTTAACGGCAT
* *
8112804 AAAAAGTCTTAAACAATGTAAATGTTAGCTTTTTCACATATATCAATTGTGAAAACTAAGTTCAA
571 AAAAAGTCTTAAACAATGTAAACGTTAGCTTTTTCACATATATCAACTGTGAAAACTAAGTTCAA
* * *
8112869 TCATTCAAAAAAGTTTAATATCATGTATTGAAGCCATCCAAATTGTTAAAATAGAATAATAATAA
636 TCATTCAAAAAAGTTTAATATCATG-ATTGAAGCCATCCAAACTGTTAAAATAGAACAATAACAA
* * ** * * *
8112934 AAATTTTGTATTTTTACCTTTTAATGGCAAAAATAGTCCTAAATAGACGAAAACGATGACTTTTT
700 AAATTTTGTATTTTTACCTCTCAACAGCAAAAATAGTCATAAACAGACGAAAACGATAACTTTTT
*
8112999 CACACATATCAACTGTAGAAACCAAGT
765 CACACATATCAACTGTAGAAACC-A-C
* * * * * * *
8113026 TCAATCATTTGGACAAATTTATTATCATGTATTGAAGTTATCCAAACTATTAAAATAGAATAATA
1 TCAATCATTTGGATAAGTTTAATATCATATATTGAAGCTATCCAAACTGTTAAAATAGAACAATA
* * * * *
8113091 ATAGCAAATTTATAATTTTGCCTTTTAATGACATAAAAAGTCCTAAACAGACAT-AACGTTAGCT
66 ATAGCAAATTTAT--TTTTTCCTTTTAATGACACAAAAAGTCCTAAACAGACGTAAACGATAACT
* * * ** * * *
8113155 TTTTCACACATATCGA-CTGTAAAAATCAAGCTT-AATTATTCAATCAAGTT--TATCATATATT
129 TTTTCATACATATCAACCTG--AAAATCAAG-TTCAATAATTTGATAAATTTAATATCATGTATT
* * * * **
8113216 GAAGCTATTCAAACTGTTAAAACAAA-AAAAATTGCAATTTTGCATTATAT-CTTTTAACATTAT
191 GAAGCTATTCAAACTGTTAAAACAAACAAAAATAGCAAATTTGTATT-TTTGCTTTTAACGGTAT
** ** * * * *
8113279 AAAAAGTCCTAAACAAACGTAAACGCTAGTTTTTTTCACACATATTAATTATGGAAACCAAGTTT
255 AAAAAGTCCTAAACAAACGTAAACAATA-ACTTTTTCACATATATTAATCAT-AAAACCAAGTTC
** * * * * * *
8113344 AATTATTTTGATAAGTTTAATATTATGTATTGAAGCTATGCAAACTATTAAAACAGAACAATTAC
318 AATTATTTAAAAAAGTTTAATATAATGTATTGAAGCTAT-CAAATTATTAAAATAGAATAATAAC
* * *
8113409 AATAAATTTGCATTTTTTACTCTTAATAGCACAAAAAGTCTTAAACAAATATAAACGATAACTTT
382 TATAAATTTGTA-TTTTTACT-TTAATAGCA-AAAAAGTCCTAAACAAATATAAACGATAACTTT
* ** * *
8113474 TTTATTCATATCAACTATGAAAACTATGTTCAATCATTCAGACAAGTTTAATATCATGCATTGAA
444 TTCACACATATCAACTATGAAAACCAAGTTCAATCATTCAGACAAGTTTAATATCATGCATTGAA
**
8113539 GCTATTGAAATTGTTAAAATA-GAACAATAATAACAAATTTGCA-TTTTACCTTTTAACGGCATA
509 GCTATCCAAATTGTTAAAATAGGAA-AA-AATAACAAATTTGCATTTTTACCTTTTAACGGCATA
8113602 AAAAGTCTTAAACAAATGTAAACGTTA-CTTTTTCACATATATCAACTGTGAAAACTAAGTTCAA
572 AAAAGTCTTAAAC-AATGTAAACGTTAGCTTTTTCACATATATCAACTGTGAAAACTAAGTTCAA
* ** * * * * *
8113666 TTATTCCGATAAGTTTAATATCATG-TTGAAGCTATTCAAACTGTTAAAATATAACAGTAACAAC
636 TCATTCAAAAAAGTTTAATATCATGATTGAAGCCATCCAAACTGTTAAAATAGAACAATAACAA-
** * * *
8113730 AAA-TTTGTATTTTTGTCTCTCAACAGCACAAAA-AGTCATAAACAGATGTAAATGATAACTTTT
700 AAATTTTGTATTTTTACCTCTCAACAGCA-AAAATAGTCATAAACAGACGAAAACGATAACTTTT
* *
8113793 TGACACATATCAATTGT-GAAAACC-C
764 TCACACATATCAACTGTAG-AAACCAC
* *
8113818 TCAATCATTCGGATAAGTTTAATATCATATATTAAAGCTATCCAAACTGTTAAAATAGAACAATA
1 TCAATCATTTGGATAAGTTTAATATCATATATTGAAGCTATCCAAACTGTTAAAATAGAACAATA
* * * * *
8113883 ATAACAAATTTATTTTTTAACCTATTAACGACACAAAAAGTCCTAAATAGACGTAAACGATAATT
66 ATAGCAAATTTATTTTTT--CCTTTTAATGACACAAAAAGTCCTAAACAGACGTAAACGATAACT
*
8113948 TTTTTATACATATCAACCATGAAAA-CTAAGTTCAATAATTTGGATAAATTTAATATCATGTATT
129 TTTTCATACATATCAACC-TGAAAATC-AAGTTCAATAATTT-GATAAATTTAATATCATGTATT
* * *
8114012 GAAGCTATTCAAACTGTTAAAACATAACAACAACAGCAAATTTGTATTTTTGCATTTTAACGGCA
191 GAAGCTATTCAAACTGTTAAAACA-AACAAAAATAGCAAATTTGTATTTTTGC-TTTTAACGGTA
* * ** * * *
8114077 TAAAAAGTCCTAAATAAACATAAACAATAACTTTTTCTTATATATCAATCGTAAAATCGAAGTTC
254 TAAAAAGTCCTAAACAAACGTAAACAATAACTTTTTCACATATATTAATCATAAAA-CCAAGTTC
* * *
8114142 AATTATTTAAACAAGTTTAATATAATGTATTGAAACTATCAAAATTATTAACATAGAATAATAAC
318 AATTATTTAAAAAAGTTTAATATAATGTATTGAAGCTATC-AAATTATTAAAATAGAATAATAAC
* *
8114207 TATAAA-TTGTATTTTTACCTTTGAACAACATAAAAAGTCCTAAACA
382 TATAAATTTGTATTTTTA-CTTT-AATAGCA-AAAAAGTCCTAAACA
8114253 GACATAAATT
Statistics
Matches: 998, Mismatches: 192, Indels: 81
0.79 0.15 0.06
Matches are distributed among these distances:
790 4 0.00
792 100 0.10
793 33 0.03
794 8 0.01
795 96 0.10
796 53 0.05
797 314 0.31
798 179 0.18
799 37 0.04
800 31 0.03
801 2 0.00
802 5 0.01
803 39 0.04
804 97 0.10
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.35
Consensus pattern (789 bp):
TCAATCATTTGGATAAGTTTAATATCATATATTGAAGCTATCCAAACTGTTAAAATAGAACAATA
ATAGCAAATTTATTTTTTCCTTTTAATGACACAAAAAGTCCTAAACAGACGTAAACGATAACTTT
TTCATACATATCAACCTGAAAATCAAGTTCAATAATTTGATAAATTTAATATCATGTATTGAAGC
TATTCAAACTGTTAAAACAAACAAAAATAGCAAATTTGTATTTTTGCTTTTAACGGTATAAAAAG
TCCTAAACAAACGTAAACAATAACTTTTTCACATATATTAATCATAAAACCAAGTTCAATTATTT
AAAAAAGTTTAATATAATGTATTGAAGCTATCAAATTATTAAAATAGAATAATAACTATAAATTT
GTATTTTTACTTTAATAGCAAAAAAGTCCTAAACAAATATAAACGATAACTTTTTCACACATATC
AACTATGAAAACCAAGTTCAATCATTCAGACAAGTTTAATATCATGCATTGAAGCTATCCAAATT
GTTAAAATAGGAAAAAATAACAAATTTGCATTTTTACCTTTTAACGGCATAAAAAGTCTTAAACA
ATGTAAACGTTAGCTTTTTCACATATATCAACTGTGAAAACTAAGTTCAATCATTCAAAAAAGTT
TAATATCATGATTGAAGCCATCCAAACTGTTAAAATAGAACAATAACAAAAATTTTGTATTTTTA
CCTCTCAACAGCAAAAATAGTCATAAACAGACGAAAACGATAACTTTTTCACACATATCAACTGT
AGAAACCAC
Found at i:8117735 original size:17 final size:17
Alignment explanation
Indices: 8117713--8117752 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
8117703 AATCTATGAT
8117713 CTATTTATTTACTTCGC
1 CTATTTATTTACTTCGC
8117730 CTATTTATTTACTTCGC
1 CTATTTATTTACTTCGC
8117747 C-ATTTA
1 CTATTTA
8117753 AACTATGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.22
17 18 0.78
ACGTcount: A:0.20, C:0.23, G:0.05, T:0.53
Consensus pattern (17 bp):
CTATTTATTTACTTCGC
Found at i:8127803 original size:3 final size:3
Alignment explanation
Indices: 8127795--8127831 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
8127785 AGGATAAGAA
8127795 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8127832 AAGTTACTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:8129830 original size:32 final size:33
Alignment explanation
Indices: 8129787--8129851 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
8129777 TCATCAACAG
*
8129787 ACACACAATTCACATATTATAGAAACAGAATCT
1 ACACACAATTCACAGATTATAGAAACAGAATCT
8129820 ACACA-AATTCACAGATTATAGAAACAGAATCT
1 ACACACAATTCACAGATTATAGAAACAGAATCT
8129852 TACTTATCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 26 0.84
33 5 0.16
ACGTcount: A:0.49, C:0.20, G:0.08, T:0.23
Consensus pattern (33 bp):
ACACACAATTCACAGATTATAGAAACAGAATCT
Found at i:8131768 original size:18 final size:18
Alignment explanation
Indices: 8131724--8131775 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
8131714 TTCTCTCTCT
8131724 CCTTTTCTCTTTCCTTTG
1 CCTTTTCTCTTTCCTTTG
* * *
8131742 CCCTGTCTCTTTCCTTTT
1 CCTTTTCTCTTTCCTTTG
* *
8131760 CTTTTTCTCTATCCTT
1 CCTTTTCTCTTTCCTT
8131776 ATCTCTACCC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.02, C:0.35, G:0.04, T:0.60
Consensus pattern (18 bp):
CCTTTTCTCTTTCCTTTG
Found at i:8131843 original size:17 final size:18
Alignment explanation
Indices: 8131821--8131854 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8131811 GCTCTCTGTC
*
8131821 CCTTTCCCTG-TCCTTTT
1 CCTTTCCATGATCCTTTT
8131838 CCTTTCCATGATCCTTT
1 CCTTTCCATGATCCTTT
8131855 CGATCCTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.06, C:0.38, G:0.06, T:0.50
Consensus pattern (18 bp):
CCTTTCCATGATCCTTTT
Found at i:8138572 original size:2 final size:2
Alignment explanation
Indices: 8138565--8138603 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
8138555 AAGTATTCTT
*
8138565 TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8138604 ATGTGTCGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8141837 original size:2 final size:2
Alignment explanation
Indices: 8141830--8141854 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8141820 ATTTCTCAAA
8141830 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8141855 AAACGTGACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8147739 original size:5 final size:5
Alignment explanation
Indices: 8147729--8147754 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8147719 ATTTAAACAA
8147729 AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG A
8147755 GTAAAAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:8160407 original size:14 final size:15
Alignment explanation
Indices: 8160388--8160416 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8160378 GGTTTTCATT
8160388 AAATG-AAATTAATA
1 AAATGAAAATTAATA
8160402 AAATGAAAATTAATA
1 AAATGAAAATTAATA
8160417 TATTTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATGAAAATTAATA
Found at i:8174978 original size:65 final size:65
Alignment explanation
Indices: 8174847--8174975 Score: 208
Period size: 65 Copynumber: 2.0 Consensus size: 65
8174837 TCACACCAAC
* * * *
8174847 TTAATTGGTGAAATTATTTAAAGATCCGAAAAAATATATATATATATAAATAAAAATATATTATA
1 TTAATTGATGAAATTATTTAAAGATCCGAAAAAAAATATAAATATAAAAATAAAAATATATTATA
8174912 TTAATTGATGAAATTATTTAAAGATCCGAAAAAAAATA-AAATATAAAAATAAAAATAT-TTATA
1 TTAATTGATGAAATTATTTAAAGATCCGAAAAAAAATATAAATATAAAAATAAAAATATATTATA
8174975 T
1 T
8174976 ATTTTGTTTC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
63 6 0.10
64 18 0.30
65 36 0.60
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (65 bp):
TTAATTGATGAAATTATTTAAAGATCCGAAAAAAAATATAAATATAAAAATAAAAATATATTATA
Found at i:8176059 original size:18 final size:18
Alignment explanation
Indices: 8176017--8176059 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
8176007 ATCACAAAGA
*
8176017 GCAGCTTTTTTTTTTTTTT
1 GCAG-TTTTTTTCTTTTTT
**
8176036 TTAGTTTTTTTCTTTTTT
1 GCAGTTTTTTTCTTTTTT
8176054 GCAGTT
1 GCAGTT
8176060 AATTGAAGCG
Statistics
Matches: 19, Mismatches: 5, Indels: 1
0.76 0.20 0.04
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.07, C:0.09, G:0.12, T:0.72
Consensus pattern (18 bp):
GCAGTTTTTTTCTTTTTT
Found at i:8176662 original size:20 final size:19
Alignment explanation
Indices: 8176637--8176691 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
8176627 TTTTATATTT
8176637 ATATTTATATTTAAAAAATA
1 ATATTT-TATTTAAAAAATA
*
8176657 ATATTTTTTATTAAAAAATA
1 ATATTTTAT-TTAAAAAATA
*
8176677 ATATTTTATATAAAA
1 ATATTTTATTTAAAA
8176692 TTTTTTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 7 0.23
20 24 0.77
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATATTTTATTTAAAAAATA
Found at i:8177320 original size:21 final size:20
Alignment explanation
Indices: 8177294--8177333 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8177284 ATATTTTTTA
*
8177294 CTTAATTGTCAAATATTAAAT
1 CTTAATCGTCAAA-ATTAAAT
*
8177315 CTTAATCGTTAAAATTAAA
1 CTTAATCGTCAAAATTAAA
8177334 ACTTCAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (20 bp):
CTTAATCGTCAAAATTAAAT
Found at i:8179227 original size:20 final size:20
Alignment explanation
Indices: 8179202--8179239 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8179192 CCAAAACCTT
*
8179202 GATTTTTTCAAAAATTTCTA
1 GATTTTTCCAAAAATTTCTA
8179222 GATTTTTCCAAAAATTTC
1 GATTTTTCCAAAAATTTC
8179240 CTAAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.13, G:0.05, T:0.47
Consensus pattern (20 bp):
GATTTTTCCAAAAATTTCTA
Found at i:8179249 original size:21 final size:20
Alignment explanation
Indices: 8179205--8179252 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
8179195 AAACCTTGAT
* * *
8179205 TTTTTCAAAAATTTCTAGAT
1 TTTTCCAAAAATTTCTAAAA
8179225 TTTTCCAAAAATTTCCTAAAA
1 TTTTCCAAAAATTT-CTAAAA
8179246 TTTTCCA
1 TTTTCCA
8179253 GCAAACTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.35, C:0.17, G:0.02, T:0.46
Consensus pattern (20 bp):
TTTTCCAAAAATTTCTAAAA
Found at i:8179678 original size:22 final size:22
Alignment explanation
Indices: 8179652--8179739 Score: 61
Period size: 22 Copynumber: 3.8 Consensus size: 22
8179642 TCAACTCATG
*
8179652 AATAAAAGA-AAAAATGAAATGA
1 AATAAAA-ATAAAAATAAAATGA
*
8179674 AATAAAAATAAAAATAAAATCA
1 AATAAAAATAAAAATAAAATGA
* *
8179696 CAATAATATAATAATAATAATAATAA
1 -AATAA-A-AATAAAAATAA-AATGA
* *
8179722 TAATAATAATAATAATAA
1 -AATAAAAATAAAAATAA
8179740 TAAAAGATTA
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
21 1 0.02
22 18 0.33
23 5 0.09
24 12 0.22
25 10 0.18
26 9 0.16
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.24
Consensus pattern (22 bp):
AATAAAAATAAAAATAAAATGA
Found at i:8179709 original size:3 final size:3
Alignment explanation
Indices: 8179674--8179742 Score: 88
Period size: 3 Copynumber: 23.7 Consensus size: 3
8179664 AATGAAATGA
* * * *
8179674 AAT AAA AAT AAA AAT AA- AAT CAC AAT AAT -AT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8179720 AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
8179743 AAGATTAGGC
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
2 4 0.07
3 52 0.93
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:8180277 original size:64 final size:63
Alignment explanation
Indices: 8180150--8180291 Score: 169
Period size: 63 Copynumber: 2.2 Consensus size: 63
8180140 TTACGAGTTA
* * * *
8180150 AAAAAATAAAATGATTTGGACTGAGTTGAGATCAAAACAGTGATTGGGACTGAACCATAAGTC
1 AAAAAATAAAATGATCTAGACTGAGCTGAGATCAAAACAGTGATTGGGACTGAACCACAAGTC
* ** *
8180213 AAAAAATAAAATGATCTAGACTGAGCTGAGATCAAAAGAGCGTGA-TGGGACTGAACTGCGAGTC
1 AAAAAATAAAATGATCTAGACTGAGCTGAGATCAAAACA--GTGATTGGGACTGAACCACAAGTC
*
8180277 AGAAACATAAAATGA
1 A-AAAAATAAAATGA
8180292 GTCAAAAAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
63 35 0.52
64 16 0.24
65 16 0.24
ACGTcount: A:0.44, C:0.12, G:0.23, T:0.20
Consensus pattern (63 bp):
AAAAAATAAAATGATCTAGACTGAGCTGAGATCAAAACAGTGATTGGGACTGAACCACAAGTC
Found at i:8180295 original size:18 final size:18
Alignment explanation
Indices: 8180272--8180309 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8180262 ACTGAACTGC
* *
8180272 GAGTCAGAAACATAAAAT
1 GAGTCAAAAAAATAAAAT
8180290 GAGTCAAAAAAATAAAAT
1 GAGTCAAAAAAATAAAAT
8180308 GA
1 GA
8180310 TCTGAACTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.08, G:0.16, T:0.16
Consensus pattern (18 bp):
GAGTCAAAAAAATAAAAT
Found at i:8180374 original size:83 final size:82
Alignment explanation
Indices: 8180209--8180371 Score: 190
Period size: 83 Copynumber: 2.0 Consensus size: 82
8180199 CTGAACCATA
* * *
8180209 AGTCAAAAAATAAAATGATCTAGACTGAGCTGAGATCAAAAGAGCGTGATGGGACTGAACTGCGA
1 AGTCAAAAAATAAAATGATCTAGACTGAGCTGAGATCAAAAGAGCGTGACGAGACTGAACTCCGA
8180274 GTCAGAAACATAAAATG
66 GTCAGAAACATAAAATG
* *
8180291 AGTCAAAAAAATAAAATGATCT-GAACTGAGCTGAGATCGAAAA-AG-GTTACCGAGATTGAAC-
1 AGTC-AAAAAATAAAATGATCTAG-ACTGAGCTGAGATC-AAAAGAGCGTGA-CGAGACTGAACT
*
8180352 CCGTAAGTTAGAAACATAAA
62 CCG--AGTCAGAAACATAAA
8180372 TGATTTGGAT
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
82 10 0.14
83 41 0.59
84 18 0.26
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.19
Consensus pattern (82 bp):
AGTCAAAAAATAAAATGATCTAGACTGAGCTGAGATCAAAAGAGCGTGACGAGACTGAACTCCGA
GTCAGAAACATAAAATG
Found at i:8180437 original size:64 final size:64
Alignment explanation
Indices: 8180295--8180829 Score: 336
Period size: 65 Copynumber: 8.3 Consensus size: 64
8180285 AAAATGAGTC
* * * * *
8180295 AAAAAAATAAAATGATCTGAACTGAG-CTGAGATCGAAAA-AGGTTACCGAGATTGAACCCGTAA
1 AAAAACATAAAATGATCTGGATTGAGTC-GAGATC-AAAACAGGTGA-CGGGATTGAA-CCGTAA
8180358 GTT
62 GTT
* * * ** * *
8180361 AGAAACAT-AAATGATTTGGATTGAATCGAGATCAAAACAGGTGACAAGATTGAACCATGAGTT
1 AAAAACATAAAATGATCTGGATTGAGTCGAGATCAAAACAGGTGACGGGATTGAACCGTAAGTT
* ** * * * * * *
8180424 AAAAACATAAAATGATTTAAACTGAGCCGAGATC-AAACAAGTAAACGGGATTGAA-TGATGAGT
1 AAAAACATAAAATGATCTGGATTGAGTCGAGATCAAAACAGGT-GACGGGATTGAACCG-TAAGT
*
8180487 C
64 T
* * * * *
8180488 AGAAAA-ATAAAATAATCTGGATTGAGCCGAGATGCAAAATAAGTTACTGGGATTGAACCGTAAG
1 A-AAAACATAAAATGATCTGGATTGAGTCGAGAT-CAAAACAGGTGAC-GGGATTGAACCGTAAG
8180552 TT
63 TT
* * * * *
8180554 AAAAAAATAAAATAATCTGGATTGAGTTGAGATTAAAACAGGTGACTGGGATTAAACTTCG--AG
1 AAAAACATAAAATGATCTGGATTGAGTCGAGATCAAAACAGGTGAC-GGGATTGAAC--CGTAAG
*
8180617 TC
63 TT
* * * * *
8180619 AAAAACATAAAATGATCTGAATTGTGTCGAGAT-AAAACAGTTGATTGGGATTGAACCGCAAGTT
1 AAAAACATAAAATGATCTGGATTGAGTCGAGATCAAAACAGGTGA-CGGGATTGAACCGTAAGTT
* * ** * * ** *
8180683 AAAAACATAAAATGATATGGACT-AAACTGAGATCAAAATAGGTGATTGGGATTGAATTGCAAGT
1 AAAAACATAAAATGATCTGGATTGAGTC-GAGATCAAAACAGGTGA-CGGGATTGAACCGTAAGT
*
8180747 C
64 T
* * * * * *
8180748 ACAAAA-ATAAAATCATCTGGATTGAGTTGAGATCAAAACAAGTGATCGGGGTTGAATCGTGAGT
1 A-AAAACATAAAATGATCTGGATTGAGTCGAGATCAAAACAGGTGA-CGGGATTGAACCGTAAGT
*
8180812 C
64 T
*
8180813 AAAAAAATAAAATGATC
1 AAAAACATAAAATGATC
8180830 CAAACTGAGC
Statistics
Matches: 373, Mismatches: 75, Indels: 43
0.76 0.15 0.09
Matches are distributed among these distances:
62 2 0.01
63 22 0.06
64 121 0.32
65 167 0.45
66 58 0.16
67 3 0.01
ACGTcount: A:0.44, C:0.11, G:0.21, T:0.24
Consensus pattern (64 bp):
AAAAACATAAAATGATCTGGATTGAGTCGAGATCAAAACAGGTGACGGGATTGAACCGTAAGTT
Found at i:8180695 original size:129 final size:129
Alignment explanation
Indices: 8180483--8180787 Score: 346
Period size: 129 Copynumber: 2.3 Consensus size: 129
8180473 ATTGAATGAT
* * *
8180483 GAGTCAGAAAAATAAAATAATCTGGATTGAGCCGAGATGCAAAATAAGTTACTGGGATTGAACCG
1 GAGTCACAAAAATAAAATAATCTGGATTGAGTCGAGAT-CAAAA-CAGTTACTGGGATTGAACCG
* * * * ** *
8180548 TAAGTTAAAAAAATAAAATAATCTGGATTGAGTTGAGATTAAAACAGGTGACTGGGATTAAACTT
64 CAAGTTAAAAAAATAAAATAATATGGACTAAACTGAGATCAAAACAGGTGACTGGGATTAAA-TT
8180613 -C
128 GC
* * * *
8180614 GAGTCA-AAAACATAAAATGATCTGAATTGTGTCGAGAT-AAAACAGTTGATTGGGATTGAACCG
1 GAGTCACAAAA-ATAAAATAATCTGGATTGAGTCGAGATCAAAACAGTT-ACTGGGATTGAACCG
* * * * *
8180677 CAAGTTAAAAACATAAAATGATATGGACTAAACTGAGATCAAAATAGGTGATTGGGATTGAATTG
64 CAAGTTAAAAAAATAAAATAATATGGACTAAACTGAGATCAAAACAGGTGACTGGGATTAAATTG
8180742 C
129 C
* * *
8180743 AAGTCACAAAAATAAAATCATCTGGATTGAGTTGAGATCAAAACA
1 GAGTCACAAAAATAAAATAATCTGGATTGAGTCGAGATCAAAACA
8180788 AGTGATCGGG
Statistics
Matches: 146, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
128 6 0.04
129 97 0.66
130 14 0.10
131 29 0.20
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.25
Consensus pattern (129 bp):
GAGTCACAAAAATAAAATAATCTGGATTGAGTCGAGATCAAAACAGTTACTGGGATTGAACCGCA
AGTTAAAAAAATAAAATAATATGGACTAAACTGAGATCAAAACAGGTGACTGGGATTAAATTGC
Found at i:8183039 original size:18 final size:18
Alignment explanation
Indices: 8183016--8183051 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8183006 AGCCAAAGTG
*
8183016 GCAAATGTATTTGTAATT
1 GCAAATGCATTTGTAATT
8183034 GCAAATGCATTTGTAATT
1 GCAAATGCATTTGTAATT
8183052 TGATTTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (18 bp):
GCAAATGCATTTGTAATT
Found at i:8188011 original size:19 final size:19
Alignment explanation
Indices: 8187989--8188071 Score: 60
Period size: 20 Copynumber: 4.3 Consensus size: 19
8187979 AAGGGTTTGT
*
8187989 GGTTGGTTTTAGTGTTTAG
1 GGTTGGTTTTAGAGTTTAG
* * **
8188008 GGTTTTGCTTTAGAGTTTTT
1 GG-TTGGTTTTAGAGTTTAG
8188028 GGTTAGG-TTTAGAGTTTAG
1 GGTT-GGTTTTAGAGTTTAG
* * *
8188047 GGTTTGTTTTAAGGGTTTAA
1 GGTTGGTTTT-AGAGTTTAG
8188067 GGTTG
1 GGTTG
8188072 ACTTTCGAAT
Statistics
Matches: 48, Mismatches: 12, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
18 1 0.02
19 21 0.44
20 26 0.54
ACGTcount: A:0.14, C:0.01, G:0.34, T:0.51
Consensus pattern (19 bp):
GGTTGGTTTTAGAGTTTAG
Found at i:8188136 original size:20 final size:20
Alignment explanation
Indices: 8188111--8188353 Score: 131
Period size: 20 Copynumber: 12.1 Consensus size: 20
8188101 TGGGGCTTTA
8188111 ACCTTAGGTTTAAGGGTTTG
1 ACCTTAGGTTTAAGGGTTTG
*
8188131 ACCTTAGG-TTAGGGGGTTTG
1 ACCTTAGGTTTA-AGGGTTTG
* *
8188151 A-CTTTGGAAATTAAGGGTTTG
1 ACCTTAGG--TTTAAGGGTTTG
8188172 ACCTTAGGTTT-AGGGATTTG
1 ACCTTAGGTTTAAGGG-TTTG
* * *
8188192 ACTTTGAGATTT--GGGATTG
1 ACCTT-AGGTTTAAGGGTTTG
*
8188211 A-CTTAGGTTTAGGGGTTTG
1 ACCTTAGGTTTAAGGGTTTG
* * *
8188230 ACTTTAAGTTTTAAAGGTTTG
1 ACCTT-AGGTTTAAGGGTTTG
* * *
8188251 ACTTTGGGATTT-GGGGTTTG
1 ACCTTAGG-TTTAAGGGTTTG
* *
8188271 ACCTTGGGTTTAAAGGTTTG
1 ACCTTAGGTTTAAGGGTTTG
* * **
8188291 AACTTGGGTTTTGGGGTTTG
1 ACCTTAGGTTTAAGGGTTTG
* * *
8188311 ACATTGGGCTTTAAGGGTTTA
1 ACCTTAGG-TTTAAGGGTTTG
* * *
8188332 ACTTTGAGCTTTAGGGGTTTG
1 ACCTT-AGGTTTAAGGGTTTG
8188353 A
1 A
8188354 TTTTGAGATT
Statistics
Matches: 172, Mismatches: 36, Indels: 29
0.73 0.15 0.12
Matches are distributed among these distances:
17 5 0.03
18 2 0.01
19 26 0.15
20 73 0.42
21 57 0.33
22 9 0.05
ACGTcount: A:0.19, C:0.07, G:0.32, T:0.41
Consensus pattern (20 bp):
ACCTTAGGTTTAAGGGTTTG
Found at i:8188177 original size:41 final size:40
Alignment explanation
Indices: 8188120--8188359 Score: 166
Period size: 41 Copynumber: 6.0 Consensus size: 40
8188110 AACCTTAGGT
8188120 TTAAGGGTTTGACCTTAGG-TTAGGGGGTTTGACTTTGGAAA
1 TTAAGGGTTTGACCTTAGGTTTA-GGGGTTTGACTTT-GAAA
* *
8188161 TTAAGGGTTTGACCTTAGGTTTAGGGATTTGACTTTGAGA
1 TTAAGGGTTTGACCTTAGGTTTAGGGGTTTGACTTTGAAA
* * *
8188201 TT-TGGGATTGA-CTTAGGTTTAGGGGTTTGACTTT-AAGTT
1 TTAAGGGTTTGACCTTAGGTTTAGGGGTTTGACTTTGAA--A
* * * * ***
8188240 TTAAAGGTTTGACTTTGGGATTT-GGGGTTTGACCTTGGGT
1 TTAAGGGTTTGACCTTAGG-TTTAGGGGTTTGACTTTGAAA
* * * * * ***
8188280 TTAAAGGTTTGAACTTGGGTTTTGGGGTTTGACATTGGGCT
1 TTAAGGGTTTGACCTTAGGTTTAGGGGTTTGAC-TTTGAAA
* * * *
8188321 TTAAGGGTTTAACTTTGAGCTTTAGGGGTTTGATTTTGA
1 TTAAGGGTTTGACCTT-AGGTTTAGGGGTTTGACTTTGA
8188360 GATTTGGTGG
Statistics
Matches: 159, Mismatches: 30, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
37 1 0.01
38 22 0.14
39 12 0.08
40 39 0.25
41 66 0.42
42 19 0.12
ACGTcount: A:0.19, C:0.07, G:0.32, T:0.42
Consensus pattern (40 bp):
TTAAGGGTTTGACCTTAGGTTTAGGGGTTTGACTTTGAAA
Found at i:8188358 original size:21 final size:21
Alignment explanation
Indices: 8188143--8188360 Score: 114
Period size: 21 Copynumber: 10.8 Consensus size: 21
8188133 CTTAGGTTAG
**
8188143 GGGGTTTGACTTTG-GAAATTA
1 GGGGTTTGACTTTGAG-CTTTA
* * *
8188164 AGGGTTTGACCTT-AGGTTTA
1 GGGGTTTGACTTTGAGCTTTA
* *
8188184 GGGATTTGACTTTGAGATTT-
1 GGGGTTTGACTTTGAGCTTTA
* *
8188204 -GGGATTGAC-TT-AGGTTTA
1 GGGGTTTGACTTTGAGCTTTA
* *
8188222 GGGGTTTGACTTTAAGTTTTA
1 GGGGTTTGACTTTGAGCTTTA
** * *
8188243 AAGGTTTGACTTTGGGATTT-
1 GGGGTTTGACTTTGAGCTTTA
* *
8188263 GGGGTTTGACCTTG-GGTTTA
1 GGGGTTTGACTTTGAGCTTTA
** * *
8188283 AAGGTTTGAAC-TTG-GGTTTT
1 GGGGTTTG-ACTTTGAGCTTTA
* *
8188303 GGGGTTTGACATTGGGCTTTA
1 GGGGTTTGACTTTGAGCTTTA
* *
8188324 AGGGTTTAACTTTGAGCTTTA
1 GGGGTTTGACTTTGAGCTTTA
*
8188345 GGGGTTTGATTTTGAG
1 GGGGTTTGACTTTGAG
8188361 ATTTGGTGGT
Statistics
Matches: 151, Mismatches: 36, Indels: 20
0.73 0.17 0.10
Matches are distributed among these distances:
17 5 0.03
18 2 0.01
19 21 0.14
20 49 0.32
21 74 0.49
ACGTcount: A:0.19, C:0.06, G:0.33, T:0.42
Consensus pattern (21 bp):
GGGGTTTGACTTTGAGCTTTA
Found at i:8190329 original size:143 final size:141
Alignment explanation
Indices: 8190103--8190497 Score: 363
Period size: 140 Copynumber: 2.8 Consensus size: 141
8190093 TCCAAAAGAT
* * * * ** *
8190103 CAAATTATGAAAATA-CCTAAAATGGATATTTTGATAATTT-TACCCATTTAAGGTGCAATCAAA
1 CAAATTATGAAAATACCCTTAAA-GGGTATTTTGGTAATTTCAACCTTTTTAAGGTGCAATCAGA
*
8190166 GTTTTGAATGCATCAAAATTCATAGAATAATATTAAAACATGATCTGGAGCTTTTCACAAAAAAT
65 -TTTT-AATGCATCAAAATTCATAGAATAATATTAAAA-ATGATCTGGAGCTTTTCACAAAAAAC
*
8190231 CAA-CTTAAAAAAAGT
127 CAACCTT-AAAAAAGC
* *
8190246 TAAATTATGAAAATACCCTTAAAGGGTATTTTGGTAATTTCAACCTTTTTAGGGTGCAATCTAGA
1 CAAATTATGAAAATACCCTTAAAGGGTATTTTGGTAATTTCAACCTTTTTAAGGTGCAATC-AGA
** * * * * *** **
8190311 TTTTAATGTGTTATAATTCAT-GAAACAATATT-GAAA-GATCTATCGCTTTTCATGAAAAACCA
65 TTTTAATGCATCAAAATTCATAG-AATAATATTAAAAATGATCTGGAGCTTTTCACAAAAAACCA
** *
8190373 ACCTTTTAAATGC
129 ACCTTAAAAAAGC
** * * *
8190386 CAAATTACAAAAATACCCCTAAAGGGCATTTTGGTAATTTCAACCTTTGTAAGGTGCAATCAAGA
1 CAAATTATGAAAATACCCTTAAAGGGTATTTTGGTAATTTCAACCTTTTTAAGGTGCAATC-AGA
* *
8190451 TTTCAATGCATCAAAATTCATTA-AATAATATTAAAAGATGATATGGA
65 TTTTAATGCATCAAAATTCA-TAGAATAATATTAAAA-ATGATCTGGA
8190498 TTTTTTTTTA
Statistics
Matches: 198, Mismatches: 44, Indels: 20
0.76 0.17 0.08
Matches are distributed among these distances:
140 105 0.53
141 7 0.04
142 4 0.02
143 54 0.27
144 26 0.13
145 2 0.01
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (141 bp):
CAAATTATGAAAATACCCTTAAAGGGTATTTTGGTAATTTCAACCTTTTTAAGGTGCAATCAGAT
TTTAATGCATCAAAATTCATAGAATAATATTAAAAATGATCTGGAGCTTTTCACAAAAAACCAAC
CTTAAAAAAGC
Found at i:8193551 original size:29 final size:30
Alignment explanation
Indices: 8193519--8193583 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 30
8193509 TAACAATCAT
*
8193519 TTAAATTCATAGTATTTTATTACAA-TAAA
1 TTAAATTCATAATATTTTATTACAATTAAA
* ** * *
8193548 TTAAGTTTTTAATATTTTATTTCAATTCAA
1 TTAAATTCATAATATTTTATTACAATTAAA
8193578 TTAAAT
1 TTAAAT
8193584 CTTTAACTAG
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
29 20 0.71
30 8 0.29
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (30 bp):
TTAAATTCATAATATTTTATTACAATTAAA
Found at i:8193589 original size:30 final size:29
Alignment explanation
Indices: 8193531--8193589 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
8193521 AAATTCATAG
* *
8193531 TATTTTATTACAATAAATTAAGTTTTTAA
1 TATTTTATTACAATAAATTAAATCTTTAA
* *
8193560 TATTTTATTTCAATTCAATTAAATCTTTAA
1 TATTTTATTACAA-TAAATTAAATCTTTAA
8193590 CTAGATAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.53
Consensus pattern (29 bp):
TATTTTATTACAATAAATTAAATCTTTAA
Found at i:8194535 original size:60 final size:61
Alignment explanation
Indices: 8194398--8194535 Score: 163
Period size: 60 Copynumber: 2.2 Consensus size: 61
8194388 AAGGATTATT
* *
8194398 TTTAAGGTATTTTTGATAAAAAAAAATGTCTTAAATAATTTTCTTTAAAAAATATTAGAGATTA
1 TTTAAGGTA-TTTT--TAAAAAAAAATGCCTTAAAAAATTTTCTTTAAAAAATATTAGAGATTA
* ** * *
8194462 TTTAAAGCGTTTTTAACAAAAAATGCCTTAAACAAATTTT-TTT-AAAAATATTTGAGATTA
1 TTTAAGGTATTTTTAAAAAAAAATGCCTTAAA-AAATTTTCTTTAAAAAATATTAGAGATTA
8194522 TTTAAGGTATTTTT
1 TTTAAGGTATTTTT
8194536 TTTATCAATA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
60 27 0.43
61 20 0.32
62 6 0.10
63 4 0.06
64 6 0.10
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.43
Consensus pattern (61 bp):
TTTAAGGTATTTTTAAAAAAAAATGCCTTAAAAAATTTTCTTTAAAAAATATTAGAGATTA
Found at i:8194536 original size:61 final size:62
Alignment explanation
Indices: 8194398--8194536 Score: 167
Period size: 61 Copynumber: 2.2 Consensus size: 62
8194388 AAGGATTATT
* *
8194398 TTTAAGGTATTTTTGATAAAAAAAAATGTCTTAAATAATTTTCTTTAAAAAATATTAGAGATTA
1 TTTAAGGTATTTTT--TAAAAAAAAATGCCTTAAAAAATTTTCTTTAAAAAATATTAGAGATTA
* ** * *
8194462 TTTAAAG-CGTTTTTAACAAAAAATGCCTTAAACAAATTTT-TTT-AAAAATATTTGAGATTA
1 TTTAAGGTATTTTTTAAAAAAAAATGCCTTAAA-AAATTTTCTTTAAAAAATATTAGAGATTA
8194522 TTTAAGGTATTTTTT
1 TTTAAGGTATTTTTT
8194537 TTATCAATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
60 22 0.35
61 25 0.40
62 6 0.10
63 4 0.06
64 6 0.10
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (62 bp):
TTTAAGGTATTTTTTAAAAAAAAATGCCTTAAAAAATTTTCTTTAAAAAATATTAGAGATTA
Found at i:8195291 original size:17 final size:17
Alignment explanation
Indices: 8195269--8195302 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8195259 AAATTAATAG
8195269 TGTTAACTTTTTCATCC
1 TGTTAACTTTTTCATCC
*
8195286 TGTTAATTTTTTCATCC
1 TGTTAACTTTTTCATCC
8195303 AAATAAGGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (17 bp):
TGTTAACTTTTTCATCC
Found at i:8202107 original size:75 final size:72
Alignment explanation
Indices: 8201939--8202128 Score: 218
Period size: 75 Copynumber: 2.6 Consensus size: 72
8201929 AACACGCCTT
* * * * * * *
8201939 GCATGCCATTTATTTGCACTAAGACATATGGTTTAATTTAGTCCCCATTTTTGTCGATATGCCTA
1 GCATGCCATTTATTTGCATTAAGGCATATGGATTAACTTAGTCCCCATTTTTGTCGACATACCCA
*
8202004 ATGTGCC
66 ACGTGCC
* * * *
8202011 CCATACACCATTTATTTGCATTTAGGCATATGGGTTAACTTAGTCCCCATTTTCTGTCGACATAC
1 GCAT--GCCATTTATTTGCATTAAGGCATATGGATTAACTTAGTCCCCATTTT-TGTCGACATAC
8202076 CCAACGTGGCC
63 CCAACGT-GCC
*
8202087 GGCATGCCATTTATTTGCATTAAGGTATATGGATTAACTTAG
1 -GCATGCCATTTATTTGCATTAAGGCATATGGATTAACTTAG
8202129 CCCTTATTTC
Statistics
Matches: 97, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
72 3 0.03
74 41 0.42
75 47 0.48
76 3 0.03
77 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (72 bp):
GCATGCCATTTATTTGCATTAAGGCATATGGATTAACTTAGTCCCCATTTTTGTCGACATACCCA
ACGTGCC
Found at i:8202338 original size:55 final size:55
Alignment explanation
Indices: 8202200--8202503 Score: 164
Period size: 55 Copynumber: 5.5 Consensus size: 55
8202190 TTACACATCG
* * * * * * *
8202200 ACAC-CTCAACATGCCCCTGGCACCTTTATTTTTTTGTGTTAAGGCTCCATGACA
1 ACACACTCAACATGCCCCTAGCACCTTTATCTATCTGTGTTAAGGATTCATGCCA
* *** * * ** * *
8202254 ACACACTCAATATATGCTTGGCATTTTTATCTATCTGGGTTAAGGTTTCATGCCA
1 ACACACTCAACATGCCCCTAGCACCTTTATCTATCTGTGTTAAGGATTCATGCCA
* * * * * * * *
8202309 ACA-AGCTTAACATGCCCTTAGCACCTTTATTTATTTATTTTAAGGCTTCGTGCCA
1 ACACA-CTCAACATGCCCCTAGCACCTTTATCTATCTGTGTTAAGGATTCATGCCA
* * * * *
8202364 ACACACTCAACTTGCCCCTGGCACTTTTATCTGTCTGTGTTAAGGAATCATGCCA
1 ACACACTCAACATGCCCCTAGCACCTTTATCTATCTGTGTTAAGGATTCATGCCA
** ** * * * * * ** * * *
8202419 ACATGCTCAATGTGCCTCTGGCACCATTATTTATTTAAGTTAAAG-CTCTGTGCCA
1 ACACACTCAACATGCCCCTAGCACCTTTATCTATCTGTGTTAAGGATTC-ATGCCA
*
8202474 ACACACTCAACTTGCCCCTAGCACCTTTAT
1 ACACACTCAACATGCCCCTAGCACCTTTAT
8202504 ATCTCATACT
Statistics
Matches: 182, Mismatches: 64, Indels: 7
0.72 0.25 0.03
Matches are distributed among these distances:
54 7 0.04
55 174 0.96
56 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (55 bp):
ACACACTCAACATGCCCCTAGCACCTTTATCTATCTGTGTTAAGGATTCATGCCA
Found at i:8202339 original size:110 final size:109
Alignment explanation
Indices: 8202207--8202490 Score: 282
Period size: 110 Copynumber: 2.6 Consensus size: 109
8202197 TCGACACCTC
* * *
8202207 AACATGCCCCTGGCACCTTTATTTTTTTGTGTTAAGGCTCCATGACAACACACTCAATATATG-C
1 AACATGCCCCTAGCACCTTTATTTATTTATGTTAAGGCTCCATGACAACACACTCAA-AT-TGCC
* * **
8202271 TTGGCATTTTTATCTATCTGGGTTAAGGTTTCATGCCAACAAGCTT
64 CTGGCACTTTTATCTATCTGGGTTAAGGAATCATGCCAACAAGCTT
* * * * * *
8202317 AACATGCCCTTAGCACCTTTATTTATTTATTTTAAGGCTTCGTGCCAACACACTCAACTTGCCCC
1 AACATGCCCCTAGCACCTTTATTTATTTATGTTAAGGCTCCATGACAACACACTCAAATTG-CCC
* * * *
8202382 TGGCACTTTTATCTGTCTGTGTTAAGGAATCATGCCAACATGCTC
65 TGGCACTTTTATCTATCTGGGTTAAGGAATCATGCCAACAAGCTT
** * * * * * ** * *
8202427 AATGTGCCTCTGGCACCATTATTTATTTAAGTTAAAGCTCTGTGCCAACACACTCAACTTGCCC
1 AACATGCCCCTAGCACCTTTATTTATTTATGTTAAGGCTCCATGACAACACACTCAAATTGCCC
8202491 CTAGCACCTT
Statistics
Matches: 144, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
108 2 0.01
109 4 0.03
110 138 0.96
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.35
Consensus pattern (109 bp):
AACATGCCCCTAGCACCTTTATTTATTTATGTTAAGGCTCCATGACAACACACTCAAATTGCCCT
GGCACTTTTATCTATCTGGGTTAAGGAATCATGCCAACAAGCTT
Found at i:8202491 original size:110 final size:110
Alignment explanation
Indices: 8202272--8202503 Score: 288
Period size: 110 Copynumber: 2.1 Consensus size: 110
8202262 AATATATGCT
* ** * *
8202272 TGGCATTTTTATCTATCTGGGTTAAGGTTTCATGCCAACAAGCTTAACATGCCCTTAGCACCTTT
1 TGGCACTTTTATCTATCTGGGTTAAGGAATCATGCCAACAAGCTCAACATGCCCTTAGCACCATT
** *
8202337 ATTTATTTATTTTAAGGCTTCGTGCCAACACACTCAACTTGCCCC
66 ATTTATTTAAGTTAAAGCTTCGTGCCAACACACTCAACTTGCCCC
* * * ** *
8202382 TGGCACTTTTATCTGTCTGTGTTAAGGAATCATGCCAACATGCTCAATGTG-CCTCTGGCACCAT
1 TGGCACTTTTATCTATCTGGGTTAAGGAATCATGCCAACAAGCTCAACATGCCCT-TAGCACCAT
8202446 TATTTATTTAAGTTAAAGC-TCTGTGCCAACACACTCAACTTGCCCC
65 TATTTATTTAAGTTAAAGCTTC-GTGCCAACACACTCAACTTGCCCC
* *
8202492 TAGCACCTTTAT
1 TGGCACTTTTAT
8202504 ATCTCATACT
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
109 5 0.05
110 99 0.95
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (110 bp):
TGGCACTTTTATCTATCTGGGTTAAGGAATCATGCCAACAAGCTCAACATGCCCTTAGCACCATT
ATTTATTTAAGTTAAAGCTTCGTGCCAACACACTCAACTTGCCCC
Found at i:8207143 original size:6 final size:6
Alignment explanation
Indices: 8207100--8207147 Score: 50
Period size: 5 Copynumber: 8.5 Consensus size: 6
8207090 AAAACTTAAT
*
8207100 AAAT-A AAATG- AAATG- AAATGA AATTGGA AAAT-A AAATGA AAATGA
1 AAATGA AAATGA AAATGA AAATGA AAAT-GA AAATGA AAATGA AAATGA
8207145 AAA
1 AAA
8207148 AAGAAAACCT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
5 19 0.51
6 13 0.35
7 5 0.14
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.19
Consensus pattern (6 bp):
AAATGA
Found at i:8207148 original size:18 final size:18
Alignment explanation
Indices: 8207110--8207148 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8207100 AAATAAAATG
* * *
8207110 AAATGAAATGAAATTGGA
1 AAATAAAATGAAAATGAA
8207128 AAATAAAATGAAAATGAA
1 AAATAAAATGAAAATGAA
8207146 AAA
1 AAA
8207149 AGAAAACCTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (18 bp):
AAATAAAATGAAAATGAA
Found at i:8208013 original size:20 final size:20
Alignment explanation
Indices: 8207988--8208046 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
8207978 GAAAAAAATA
8207988 ATAATATGATATAATACTAT
1 ATAATATGATATAATACTAT
* *
8208008 ATAATAT-A-CTAATAATA-
1 ATAATATGATATAATACTAT
*
8208025 AAAATATGATAATAATACTAT
1 ATAATATGAT-ATAATACTAT
8208046 A
1 A
8208047 ATATATTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
17 6 0.20
18 8 0.27
19 1 0.03
20 14 0.47
21 1 0.03
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (20 bp):
ATAATATGATATAATACTAT
Found at i:8209170 original size:52 final size:53
Alignment explanation
Indices: 8209107--8209208 Score: 161
Period size: 52 Copynumber: 1.9 Consensus size: 53
8209097 CATAATATTT
* *
8209107 CAAGTTTCGTAAAGGTTCTAGGTTCACAAAGATTTTT-AGATTCGCAAGATTC
1 CAAGTTTCGTAAAGATTCTAGATTCACAAAGATTTTTCAGATTCGCAAGATTC
* *
8209159 CAAGTTTCGTAAAGATTCTAGATTCATAAAGATTTTTCAGATTCTCAAGA
1 CAAGTTTCGTAAAGATTCTAGATTCACAAAGATTTTTCAGATTCGCAAGA
8209209 AAAGAAAGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
52 34 0.76
53 11 0.24
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (53 bp):
CAAGTTTCGTAAAGATTCTAGATTCACAAAGATTTTTCAGATTCGCAAGATTC
Found at i:8215044 original size:13 final size:14
Alignment explanation
Indices: 8215010--8215043 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
8215000 TTTGAAAAAC
8215010 TTTTTTTATTTCTA
1 TTTTTTTATTTCTA
8215024 TTTTTTTATTAT-TA
1 TTTTTTTATT-TCTA
8215038 TTTTTT
1 TTTTTT
8215044 AAATAGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 18 0.95
15 1 0.05
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTTATTTCTA
Found at i:8215219 original size:18 final size:18
Alignment explanation
Indices: 8215198--8215237 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
8215188 CTTAATAAAT
*
8215198 AAAATAAAATGAAATTGA
1 AAAATAAAATGAAAATGA
8215216 AAAATAAAATGAAAATGA
1 AAAATAAAATGAAAATGA
8215234 AAAA
1 AAAA
8215238 AGGAAAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.17
Consensus pattern (18 bp):
AAAATAAAATGAAAATGA
Found at i:8221633 original size:15 final size:16
Alignment explanation
Indices: 8221604--8221637 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8221594 ACCCCATACA
8221604 TAAAAAGTATAATTTT
1 TAAAAAGTATAATTTT
* *
8221620 TAAAAATTATATTTTT
1 TAAAAAGTATAATTTT
8221636 TA
1 TA
8221638 TAAGTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
TAAAAAGTATAATTTT
Found at i:8221640 original size:25 final size:24
Alignment explanation
Indices: 8221611--8221673 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 24
8221601 ACATAAAAAG
*
8221611 TATAATTTTTAAAAATTATATTTTT
1 TATAATTTTTAAAAATTAT-TTATT
* *
8221636 TATAA--GTTAAAAAGTATTTATT
1 TATAATTTTTAAAAATTATTTATT
* *
8221658 AATTATTTTTAAAAAT
1 TATAATTTTTAAAAAT
8221674 GTAAAAGAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
22 7 0.24
23 10 0.34
24 7 0.24
25 5 0.17
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (24 bp):
TATAATTTTTAAAAATTATTTATT
Found at i:8222200 original size:18 final size:18
Alignment explanation
Indices: 8222177--8222215 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
8222167 AAATAAGAAA
8222177 AAATTAAAAAAAAAAAAG
1 AAATTAAAAAAAAAAAAG
**
8222195 AAATTAAAAAAGTAAAAG
1 AAATTAAAAAAAAAAAAG
8222213 AAA
1 AAA
8222216 AAAAATGTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.08, T:0.13
Consensus pattern (18 bp):
AAATTAAAAAAAAAAAAG
Found at i:8223151 original size:34 final size:34
Alignment explanation
Indices: 8223062--8223175 Score: 122
Period size: 34 Copynumber: 3.4 Consensus size: 34
8223052 CTACAAAATC
* ** *
8223062 AAGATTCTCTAAAATGAATATTCGGTAAGCTTTG
1 AAGATTCTCAAAAATGAATATTCAATAAGTTTTG
*
8223096 AAGATTCTTAAAAATGAATATTCAATAAGTTTTG
1 AAGATTCTCAAAAATGAATATTCAATAAGTTTTG
* ** * *
8223130 AAGTTTCTCAAAAAT-AGATATTTGAGAAGTTTTA
1 AAGATTCTCAAAAATGA-ATATTCAATAAGTTTTG
8223164 AAGATTCTCAAA
1 AAGATTCTCAAA
8223176 TATTCATTTT
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
33 1 0.01
34 66 0.99
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (34 bp):
AAGATTCTCAAAAATGAATATTCAATAAGTTTTG
Found at i:8224330 original size:2 final size:2
Alignment explanation
Indices: 8224323--8224351 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8224313 TTTAGATCTT
8224323 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8224352 CATAGTAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8225469 original size:3 final size:3
Alignment explanation
Indices: 8225461--8225509 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
8225451 AAGGAACAAG
8225461 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8225508 AT
1 AT
8225510 TCTTTTCATT
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:8244241 original size:4 final size:4
Alignment explanation
Indices: 8244220--8244253 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
8244210 TTGGGCTGCG
* *
8244220 AAAC CAAC AAAC ACAC AAAC AAAC AAAC AAAC AA
1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AA
8244254 TTAGAGATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (4 bp):
AAAC
Found at i:8244500 original size:55 final size:55
Alignment explanation
Indices: 8244406--8244517 Score: 170
Period size: 55 Copynumber: 2.0 Consensus size: 55
8244396 AGGAAACTTG
* * * *
8244406 AATAAGCAAAAGAAAACAACGGAAAACATATTCATTTTTATACAGCACCAGAGTT
1 AATAAGCAAAAGAAAACAACGGAAAACACAATCACTTTTATACAGCACCAGAATT
* *
8244461 AATAAGCAAAAGAAAACAATGGAAAACACAATCACTTTTATAGAGCACCAGAATT
1 AATAAGCAAAAGAAAACAACGGAAAACACAATCACTTTTATACAGCACCAGAATT
8244516 AA
1 AA
8244518 AAATACTAAC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.52, C:0.16, G:0.12, T:0.20
Consensus pattern (55 bp):
AATAAGCAAAAGAAAACAACGGAAAACACAATCACTTTTATACAGCACCAGAATT
Found at i:8249074 original size:17 final size:16
Alignment explanation
Indices: 8249038--8249089 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
8249028 TTATTTCGAA
* *
8249038 TTTTGAATTTGGATTT
1 TTTTGGATTCGGATTT
8249054 TTTTGGATTCGGATATT
1 TTTTGGATTCGGAT-TT
8249071 TTTT-GATTCAGG-TTT
1 TTTTGGATTC-GGATTT
8249086 TTTT
1 TTTT
8249090 AATTCAGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 6 0.19
16 18 0.56
17 8 0.25
ACGTcount: A:0.15, C:0.04, G:0.19, T:0.62
Consensus pattern (16 bp):
TTTTGGATTCGGATTT
Found at i:8249087 original size:15 final size:16
Alignment explanation
Indices: 8249048--8249096 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
8249038 TTTTGAATTT
8249048 GGATTTTTTTGGATTC-
1 GGATTTTTTT-GATTCA
8249064 GGATATTTTTTGATTCA
1 GGAT-TTTTTTGATTCA
*
8249081 GG-TTTTTTTAATTCA
1 GGATTTTTTTGATTCA
8249096 G
1 G
8249097 TTAATTTCGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 12 0.40
16 10 0.33
17 8 0.27
ACGTcount: A:0.18, C:0.06, G:0.20, T:0.55
Consensus pattern (16 bp):
GGATTTTTTTGATTCA
Found at i:8249164 original size:16 final size:16
Alignment explanation
Indices: 8249100--8249167 Score: 50
Period size: 16 Copynumber: 4.2 Consensus size: 16
8249090 AATTCAGTTA
*
8249100 ATTTCGAATTTAAATA
1 ATTTCGAATTTAAATT
* **
8249116 ATTTC-AGATTTCAACG
1 ATTTCGA-ATTTAAATT
**
8249132 ATCTT-GAATTTTGATT
1 AT-TTCGAATTTAAATT
8249148 ATTTCGAATTTAAATT
1 ATTTCGAATTTAAATT
8249164 ATTT
1 ATTT
8249168 TTAATTAGAT
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
15 3 0.08
16 33 0.85
17 3 0.08
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.49
Consensus pattern (16 bp):
ATTTCGAATTTAAATT
Found at i:8251405 original size:39 final size:39
Alignment explanation
Indices: 8251354--8251435 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
8251344 CCTGTACTAC
8251354 TGATGGATATCTTTGTTTAGCTGTACATTTTATTGATGA
1 TGATGGATATCTTTGTTTAGCTGTACATTTTATTGATGA
8251393 TGATGGATATCTTTGTTTAGCTGTACATTTTATTGATGA
1 TGATGGATATCTTTGTTTAGCTGTACATTTTATTGATGA
8251432 TGAT
1 TGAT
8251436 TGGAAGTTAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.23, C:0.07, G:0.21, T:0.49
Consensus pattern (39 bp):
TGATGGATATCTTTGTTTAGCTGTACATTTTATTGATGA
Found at i:8253376 original size:14 final size:14
Alignment explanation
Indices: 8253359--8253389 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8253349 CACGATTAAC
8253359 ATATGTCATAACAT
1 ATATGTCATAACAT
*
8253373 ATATGTCATAACGT
1 ATATGTCATAACAT
8253387 ATA
1 ATA
8253390 GATTCGTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (14 bp):
ATATGTCATAACAT
Found at i:8263005 original size:14 final size:14
Alignment explanation
Indices: 8262974--8263012 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
8262964 TTATCTCAAT
8262974 ATAAAATA-AA-AA
1 ATAAAATACAACAA
8262986 AT-AAATACAACAA
1 ATAAAATACAACAA
8262999 ATAAAATACAACAA
1 ATAAAATACAACAA
8263013 CAACATGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.21
12 4 0.17
13 4 0.17
14 11 0.46
ACGTcount: A:0.74, C:0.10, G:0.00, T:0.15
Consensus pattern (14 bp):
ATAAAATACAACAA
Found at i:8264226 original size:49 final size:45
Alignment explanation
Indices: 8264136--8264227 Score: 105
Period size: 48 Copynumber: 2.0 Consensus size: 45
8264126 ATTTTTTTAT
* * *
8264136 AAAAATTAATTTATGAGATTCTCTAATAGTTGGTAGAATTCATAA
1 AAAAATTAATTCATGAGATCCTCCAATAGTTGGTAGAATTCATAA
8264181 AAAAATTAAATTCATGAAAGATCCTCCAATAGTTTGGTA-AGATTCAT
1 AAAAATT-AATTCATG--AGATCCTCCAATAG-TTGGTAGA-ATTCAT
8264228 GAATTTATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
45 7 0.18
46 7 0.18
48 13 0.33
49 12 0.31
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (45 bp):
AAAAATTAATTCATGAGATCCTCCAATAGTTGGTAGAATTCATAA
Found at i:8264338 original size:3 final size:3
Alignment explanation
Indices: 8264321--8264374 Score: 67
Period size: 3 Copynumber: 17.7 Consensus size: 3
8264311 TTTAATTTAA
8264321 AAT AAGT AA- AAT AAT AATT GAA- AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AA-T AAT AAT AAT AA-T -AAT AAT AAT AAT AAT AAT AAT AAT AAT
8264367 AAT AAT AA
1 AAT AAT AA
8264375 AATCTATAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
2 4 0.09
3 36 0.78
4 4 0.09
5 2 0.04
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:8264445 original size:18 final size:19
Alignment explanation
Indices: 8264386--8264445 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
8264376 ATCTATAAAT
*
8264386 AAAAT-AAAAACAAAAACAA
1 AAAATAAAAAACAGAAA-AA
*
8264405 AAAATAAAAAACAGAAAAC
1 AAAATAAAAAACAGAAAAA
*
8264424 AAAATGAAAAA-AGAAAAA
1 AAAATAAAAAACAGAAAAA
8264442 AAAA
1 AAAA
8264446 ACCTACAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
18 10 0.28
19 16 0.44
20 10 0.28
ACGTcount: A:0.83, C:0.07, G:0.05, T:0.05
Consensus pattern (19 bp):
AAAATAAAAAACAGAAAAA
Found at i:8264772 original size:18 final size:18
Alignment explanation
Indices: 8264743--8264781 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
8264733 TTAAATGTTC
8264743 TTCCTAAAATCC-AAATT
1 TTCCTAAAATCCAAAATT
8264760 TTCCTAGAAATCCAAAATT
1 TTCCTA-AAATCCAAAATT
8264779 TTC
1 TTC
8264782 AAATGAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 6 0.30
18 6 0.30
19 8 0.40
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.36
Consensus pattern (18 bp):
TTCCTAAAATCCAAAATT
Found at i:8265569 original size:29 final size:29
Alignment explanation
Indices: 8265537--8265598 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
8265527 ATAATACAAG
* *
8265537 TATACACGAATAGACATGACTAACATGGA
1 TATACACGAATAGACACGACTAACATGAA
* * *
8265566 TATACATGTATAGATACGACTAACATGAA
1 TATACACGAATAGACACGACTAACATGAA
8265595 TATA
1 TATA
8265599 TATAAGAACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.26
Consensus pattern (29 bp):
TATACACGAATAGACACGACTAACATGAA
Found at i:8268571 original size:364 final size:364
Alignment explanation
Indices: 8267897--8268575 Score: 1015
Period size: 364 Copynumber: 1.9 Consensus size: 364
8267887 ACGGAGCTTC
*
8267897 TTTAAGAAAACAAATGGTATTATTGAATATTCTCGATATAAGAAAGTATTTTTAAGAATTTTGTC
1 TTTAAGAAAACAAATGGTATTATTGAATATTCTCGATATAAGAAAGTATTTTTAAGAATTTTATC
* * *
8267962 AGTTTGATGGAGAAATCTTAAAAATTATTTTTAATATTTAAATACTAAAATTTAAGACCATTAGA
66 AATTTGATGAAAAAATCTTAAAAATTATTTTTAATATTTAAATACTAAAATTTAAGACCATTAGA
* *
8268027 ACTATAAACCTTTAAGATAATTTAAAATTAAATGATACTGTCTTTTAAGATAAGCATTGTAGGGA
131 ACTATAAACCTTTAAGATAATTTAAAATTAAATGATACTATCTTTTAAGATAAGCATTGTAGAGA
* * * * * *
8268092 TGCTATAACCTTCCTTACATGTAACCGAACTTCAAAACCTAATTCTGTTTAGAAAGTTACGACCT
196 TACTATAACATTCCTTACATATAACCGAACTTCAAAACCTAATTCTGTTCAGAAAGTTAAGACAT
* * * *
8268157 ATTCTTTAAGGACTCTTAGTTAAGCTTAAAAATTCTTTAAAAAAATAGATTCATTCGGTAACCAA
261 ATTCTTTAAGGACTCTTAGTCAAACTTAAAAACTCCTTAAAAAAATAGATTCATTCGGTAACCAA
8268222 TCATACCTTAATGAAAAAAATTGGTGATGACAAAGCCTT
326 TCATACCTTAATGAAAAAAATTGGTGATGACAAAGCCTT
*
8268261 TTTAAGAAAACAAATGGTATTCTTGAATATTCTCGATATAAGAAAGTATTTTTAAGAATTTTATC
1 TTTAAGAAAACAAATGGTATTATTGAATATTCTCGATATAAGAAAGTATTTTTAAGAATTTTATC
* *
8268326 AATTTGATGAAAAAATCTTAAGAATTATTTTTAATATTTAAATACTAAAATTTAAGACCATTTGA
66 AATTTGATGAAAAAATCTTAAAAATTATTTTTAATATTTAAATACTAAAATTTAAGACCATTAGA
* * * *
8268391 ACTATAAACCTTT-AGAATAATTTAAAATTAAATGGTATTATCTTTTAGGATGAGCATTGTA-AG
131 ACTATAAACCTTTAAG-ATAATTTAAAATTAAATGATACTATCTTTTAAGATAAGCATTGTAGAG
* * * *
8268454 AGTACTATAACATTTCTTACATATAACCGAACTCTC-GAATCTAGTTCTGTTCAGAAAGTTAAGA
195 A-TACTATAACATTCCTTACATATAACCGAACT-TCAAAACCTAATTCTGTTCAGAAAGTTAAGA
* * **
8268518 CATATTCTTT-AGAGACTTTTAGTCAAACTTAGAAACTCCTTAAAATGATAGATTCATT
258 CATATTCTTTAAG-GACTCTTAGTCAAACTTAAAAACTCCTTAAAAAAATAGATTCATT
8268576 AAGTGGTCAA
Statistics
Matches: 280, Mismatches: 31, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
363 6 0.02
364 272 0.97
365 2 0.01
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (364 bp):
TTTAAGAAAACAAATGGTATTATTGAATATTCTCGATATAAGAAAGTATTTTTAAGAATTTTATC
AATTTGATGAAAAAATCTTAAAAATTATTTTTAATATTTAAATACTAAAATTTAAGACCATTAGA
ACTATAAACCTTTAAGATAATTTAAAATTAAATGATACTATCTTTTAAGATAAGCATTGTAGAGA
TACTATAACATTCCTTACATATAACCGAACTTCAAAACCTAATTCTGTTCAGAAAGTTAAGACAT
ATTCTTTAAGGACTCTTAGTCAAACTTAAAAACTCCTTAAAAAAATAGATTCATTCGGTAACCAA
TCATACCTTAATGAAAAAAATTGGTGATGACAAAGCCTT
Found at i:8271485 original size:2 final size:2
Alignment explanation
Indices: 8271478--8271523 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
8271468 CATCTTCCTT
8271478 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8271520 TA TA
1 TA TA
8271524 AGCCCTCAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8281203 original size:718 final size:727
Alignment explanation
Indices: 8279802--8281253 Score: 2133
Period size: 718 Copynumber: 2.0 Consensus size: 727
8279792 ATTGAAGTAA
*
8279802 AAAATTGCTTGCTGCTCTCTATTTGGTATTTCATAGCTACAAGACAAATATCTTTCTCCAACATG
1 AAAATTGCTTGCTGCTCTCTATCTGGTATTTCATAGCTACAAGACAAATATCTTTCTCCAACATG
*
8279867 ATTGATATTTCTCTGGACCTACCTATCCTTTAGAATTGACAGCTCAATGGTTTTCTGGTTCTAAA
66 ATTGATATTTATCTGGACCTACCTATCCTTTAGAATTGACAGCTCAATGGTTTTCTGGTTCTAAA
*
8279932 ATGTAAATTAAATAAAAAAATATTTTTTATTAATAATTTAATATTTCCAAATAAGTCTGGACTCG
131 ATCTAAATTAAATAAAAAAATATTTTTTATTAATAATTTAATATTTCCAAATAAGTCTGGACTCG
*
8279997 AAAAATTACTATTTAAAATTTAATCTGAGTTTCAATCAAATCAAACAGCACAATGTAGATCAAAC
196 AAAAATTA-TATTT-AAATTTAATCTGAATTTCAATCAAATCAAACAGCACAATGTAGATCAAAC
* * ** *
8280062 GGATAACTTTGATTCGTGAATCAATTTACTAATTTAACTTCGAAGAAATTTCGTATGTCCAAAAG
259 GGATAACTTTGATTCGTGAATCAATCTACTAATTTAACTTCGAAGAAATTTCATACATCCAAAAA
* * * *
8280127 CTTGACTAATCAACTAATTAAAGTCTTGTGTTCCAATTTAGAATTTGCTGCTGGTATCCAACGAT
324 CTTGACTAATCAACTAATTAAAGTCTTGTGTTCCAATTCAGAATTTGCTGCTGATATCAAACGAA
* ** * *
8280192 TAACTCCATTTTATGAACATATCTATCATGGAGGAAATTTCGTATCTCCAAAAGCTTGACTACTT
389 TAACTCCAGTCCATGAACATATCTATCATGGAAGAAATTTCGTATCTCCAAAAGCTTGACTAATT
8280257 AAGTAGTTAAAGTCTTCTGTCCCCATTTTGGCATTTGCTGCCGACTATTGATTGCTCTCATTTAT
454 AAGTAGTTAAAGTCTTCTGTCCCCATTTTGGCATTTGCTGCCGACTATTGATTGCTCTCATTTAT
* * ** *
8280322 TGCCATTGTGCTGTATTTCCTTGACTAGTTAGAAACTTGTTAGCCCCATGCTCGATCTTCTTTCC
519 TGCCATTGTGCTATATTTCCCTGACTAGTTAGAAACTTGTTAGCCCCATGAACGATCTTCTTCCC
* *
8280387 TACCGAAGTTTTAGCATGCCAAAATCAAAAGTAAAACTTCCATTATTTGGCCTCATGGCCGCTTT
584 TACCAAAGTTTTAGCATGCCAAAATCAAAAGCAAAACTTCCATTATTTGGCCTCATGGCCGCTTT
8280452 CGCTTTATTTCTAATTCTATTCCCTGCTGCTTGCCTCG-CTAGGCATCGGCACGAGGACTGCCGC
649 CGCTTTATTTCTAATTCTATTCCCTGCTGCTTGCCTCGACTAGGCATCGGCACGAGGACTGCCGC
8280516 TCTGCTTTCTGTGG
714 TCTGCTTTCTGTGG
* * *
8280530 AAAATTGCTTGCTTCTCTCTATCTGGTATTTCATGGCTACAAGACAAATATCTTTCTCCAACATT
1 AAAATTGCTTGCTGCTCTCTATCTGGTATTTCATAGCTACAAGACAAATATCTTTCTCCAACATG
* *
8280595 ATTGATATTTATTTGGACCTACCTATGCTTTAGAATTGACAGCTCAATGGTTTTCTGGTTCTAAA
66 ATTGATATTTATCTGGACCTACCTATCCTTTAGAATTGACAGCTCAATGGTTTTCTGGTTCTAAA
* * * * *
8280660 ATCTAAATT-AATCTAAAAAATA-TTTTTATTAATAATTTAATATTTCGAACTGAA-TTTGGATT
131 ATCTAAATTAAAT-AAAAAAATATTTTTTATTAATAATTTAATATTTCCAAAT-AAGTCTGGACT
* * * ** *
8280722 C-AAAAA-T-TA-TT-ATTTTAATTTGAATTTCAATCCAATCAAATTGCATAATGTAGATC-AAC
194 CGAAAAATTATATTTAAATTTAATCTGAATTTCAATCAAATCAAACAGCACAATGTAGATCAAAC
* * * *
8280781 AGGATAA-TTTGATTCGTGAATCGATCTACTAA-TTAACTTTGAGGAAATTTCATACATCTAAAA
259 -GGATAACTTTGATTCGTGAATCAATCTACTAATTTAACTTCGAAGAAATTTCATACATCCAAAA
* * * *
8280844 ACTTGCCTAATTAA-TCAATTAAAGTCTTGTGTTCCCATTACAGCATTTGCTGCTGATATCAAAC
323 ACTTGACTAATCAACT-AATTAAAGTCTTGTGTTCCAATT-CAGAATTTGCTGCTGATATCAAAC
* *
8280908 GAATAACTCC-GTCCATGAACATATCTATCTTGGAAGAAATTTCTTATCTCCAAAAGCTTGACTA
386 GAATAACTCCAGTCCATGAACATATCTATCATGGAAGAAATTTCGTATCTCCAAAAGCTTGACTA
* * *
8280972 ATTGAG-AGTTAAAGTCTTCTGTCCCCATTTTGGCATTTGCTGTCGACTATTGATTGCTTTCATT
451 ATTAAGTAGTTAAAGTCTTCTGTCCCCATTTTGGCATTTGCTGCCGACTATTGATTGCTCTCATT
* * *
8281036 TATTGCCATTGTGCTATATTTCCCTGACTAGTTAGAAACTTGTTAGCCCCGTTAACGTTCTTCTT
516 TATTGCCATTGTGCTATATTTCCCTGACTAGTTAGAAACTTGTTAGCCCCATGAACGATCTTCTT
* * * *
8281101 CCCTACCCAAATTTTTAGCATGCCAAAATCAAAAGCAAAACTTCCATTGTTTGGCTTCATGGTCG
581 CCCTA-CCAAAGTTTTAGCATGCCAAAATCAAAAGCAAAACTTCCATTATTTGGCCTCATGGCCG
*
8281166 CTTTTGCTTTATTTCTAATTCTATTCCCTGCTGCTTGCCTCGCTACTAGGCATCGGCACGAGGAC
645 CTTTCGCTTTATTTCTAATTCTATTCCCTGCTGCTTGCCTCG--ACTAGGCATCGGCACGAGGAC
* *
8281231 TGCGGCTTTGCTTTCTGTGG
708 TGCCGCTCTGCTTTCTGTGG
8281251 AAA
1 AAA
8281254 CGTTAATATC
Statistics
Matches: 651, Mismatches: 64, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
717 119 0.18
718 204 0.31
719 55 0.08
720 44 0.07
721 41 0.06
722 2 0.00
723 2 0.00
725 1 0.00
726 5 0.01
727 37 0.06
728 141 0.22
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (727 bp):
AAAATTGCTTGCTGCTCTCTATCTGGTATTTCATAGCTACAAGACAAATATCTTTCTCCAACATG
ATTGATATTTATCTGGACCTACCTATCCTTTAGAATTGACAGCTCAATGGTTTTCTGGTTCTAAA
ATCTAAATTAAATAAAAAAATATTTTTTATTAATAATTTAATATTTCCAAATAAGTCTGGACTCG
AAAAATTATATTTAAATTTAATCTGAATTTCAATCAAATCAAACAGCACAATGTAGATCAAACGG
ATAACTTTGATTCGTGAATCAATCTACTAATTTAACTTCGAAGAAATTTCATACATCCAAAAACT
TGACTAATCAACTAATTAAAGTCTTGTGTTCCAATTCAGAATTTGCTGCTGATATCAAACGAATA
ACTCCAGTCCATGAACATATCTATCATGGAAGAAATTTCGTATCTCCAAAAGCTTGACTAATTAA
GTAGTTAAAGTCTTCTGTCCCCATTTTGGCATTTGCTGCCGACTATTGATTGCTCTCATTTATTG
CCATTGTGCTATATTTCCCTGACTAGTTAGAAACTTGTTAGCCCCATGAACGATCTTCTTCCCTA
CCAAAGTTTTAGCATGCCAAAATCAAAAGCAAAACTTCCATTATTTGGCCTCATGGCCGCTTTCG
CTTTATTTCTAATTCTATTCCCTGCTGCTTGCCTCGACTAGGCATCGGCACGAGGACTGCCGCTC
TGCTTTCTGTGG
Found at i:8282123 original size:18 final size:18
Alignment explanation
Indices: 8282100--8282134 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
8282090 TTCCTTATAA
8282100 ATATAAATATATATATTG
1 ATATAAATATATATATTG
8282118 ATATAAATATATATATT
1 ATATAAATATATATATT
8282135 CTTTGCCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
ATATAAATATATATATTG
Found at i:8282297 original size:14 final size:14
Alignment explanation
Indices: 8282280--8282310 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8282270 TTAATTTCAT
*
8282280 AAACAGAATTAATC
1 AAACAGAATTAAAC
8282294 AAACAGAATTAAAC
1 AAACAGAATTAAAC
8282308 AAA
1 AAA
8282311 TGTCACATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.65, C:0.13, G:0.06, T:0.16
Consensus pattern (14 bp):
AAACAGAATTAAAC
Found at i:8285680 original size:11 final size:11
Alignment explanation
Indices: 8285664--8285695 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8285654 AATCTCATAA
8285664 GAGATTTGTTT
1 GAGATTTGTTT
8285675 GAGATTTGTTT
1 GAGATTTGTTT
*
8285686 GAAATTTGTT
1 GAGATTTGTT
8285696 AGATATTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.53
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:8285791 original size:52 final size:52
Alignment explanation
Indices: 8285719--8285875 Score: 165
Period size: 52 Copynumber: 3.0 Consensus size: 52
8285709 TGGACAAGAA
* * *
8285719 GACTTGCAAAAGAAAAATTTTAAAAGAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTACAAGAGAAAAATTTTAAAAGAAAGAGGATTCTTAATAGGCAAGTTT
* ** * ** *
8285771 GATTTGTAAGAGAAGAATTTTAAGGGAAA-AGAGATTCTTAATAAGCAAGTTT
1 GACTTACAAGAGAAAAATTTTAAAAGAAAGAG-GATTCTTAATAGGCAAGTTT
* * *
8285823 GACTTACAAGAGAATAATTCTAAAAAGAAAG-GGATTCTTAATGGGCAAGTTT
1 GACTTACAAGAGAAAAATT-TTAAAAGAAAGAGGATTCTTAATAGGCAAGTTT
8285875 G
1 G
8285876 TATGGTTATA
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
51 2 0.02
52 75 0.88
53 8 0.09
ACGTcount: A:0.43, C:0.06, G:0.22, T:0.29
Consensus pattern (52 bp):
GACTTACAAGAGAAAAATTTTAAAAGAAAGAGGATTCTTAATAGGCAAGTTT
Found at i:8289082 original size:24 final size:23
Alignment explanation
Indices: 8289024--8289085 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
8289014 CTTGTTTGTG
8289024 TATTTTTTACAAA-AT-TAAAGA
1 TATTTTTTACAAACATATAAAGA
* * *
8289045 AATTTTTTATAAACATATAAATGT
1 TATTTTTTACAAACATATAAA-GA
8289069 TATTTTTTACAAACATA
1 TATTTTTTACAAACATA
8289086 ACTATTTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 11 0.33
22 2 0.06
23 4 0.12
24 16 0.48
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (23 bp):
TATTTTTTACAAACATATAAAGA
Found at i:8289451 original size:14 final size:15
Alignment explanation
Indices: 8289428--8289474 Score: 60
Period size: 14 Copynumber: 3.1 Consensus size: 15
8289418 GATTGCTTTC
8289428 TCATTATTTTTTTCAA
1 TCATT-TTTTTTTCAA
*
8289444 TCA-TTTTTTTTCGA
1 TCATTTTTTTTTCAA
8289458 TCATTTCTTTTTTCAA
1 TCATTT-TTTTTTCAA
8289474 T
1 T
8289475 GTGAGATCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 12 0.44
15 3 0.11
16 12 0.44
ACGTcount: A:0.19, C:0.15, G:0.02, T:0.64
Consensus pattern (15 bp):
TCATTTTTTTTTCAA
Found at i:8289453 original size:16 final size:16
Alignment explanation
Indices: 8289428--8289474 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
8289418 GATTGCTTTC
*
8289428 TCATTATTTTTTTCAA
1 TCATTTTTTTTTTCAA
*
8289444 TCA--TTTTTTTTCGA
1 TCATTTTTTTTTTCAA
*
8289458 TCATTTCTTTTTTCAA
1 TCATTTTTTTTTTCAA
8289474 T
1 T
8289475 GTGAGATCTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 12 0.48
16 13 0.52
ACGTcount: A:0.19, C:0.15, G:0.02, T:0.64
Consensus pattern (16 bp):
TCATTTTTTTTTTCAA
Found at i:8300156 original size:44 final size:44
Alignment explanation
Indices: 8300106--8300190 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
8300096 CATGTAGTCA
* *
8300106 ATAACTTAAT-AGTAAATCGTTTATAACTTACTAGTAAATCATCT
1 ATAACTTAATGA-TAAATCGATGATAACTTACTAGTAAATCATCT
* * *
8300150 ATAACTTAATGATAAATTGATGATAATTTAGTAGTAAATCA
1 ATAACTTAATGATAAATCGATGATAACTTACTAGTAAATCA
8300191 GTGATAAGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 34 0.97
45 1 0.03
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (44 bp):
ATAACTTAATGATAAATCGATGATAACTTACTAGTAAATCATCT
Found at i:8300166 original size:22 final size:22
Alignment explanation
Indices: 8300106--8300159 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
8300096 CATGTAGTCA
* *
8300106 ATAACTTAATAGTAAATCGTTT
1 ATAACTTAATAGTAAATCATCT
*
8300128 ATAACTTACTAGTAAATCATCT
1 ATAACTTAATAGTAAATCATCT
8300150 ATAACTTAAT
1 ATAACTTAAT
8300160 GATAAATTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.39
Consensus pattern (22 bp):
ATAACTTAATAGTAAATCATCT
Found at i:8300458 original size:22 final size:22
Alignment explanation
Indices: 8300433--8300529 Score: 86
Period size: 22 Copynumber: 4.3 Consensus size: 22
8300423 CTCATATATT
* *
8300433 GTAATTTATTGATAAATTAATA
1 GTAATTAATTGATAACTTAATA
* ** * * *
8300455 GTAAATAATAAATGACTTAGTC
1 GTAATTAATTGATAACTTAATA
*
8300477 GTAATTCAGTTGATAACTTAATA
1 GTAATT-AATTGATAACTTAATA
*
8300500 GTAAATAATTGATAACTTAATA
1 GTAATTAATTGATAACTTAATA
8300522 GTTAATTA
1 G-TAATTA
8300530 TTAAAATGTT
Statistics
Matches: 55, Mismatches: 18, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
22 35 0.64
23 20 0.36
ACGTcount: A:0.44, C:0.05, G:0.11, T:0.39
Consensus pattern (22 bp):
GTAATTAATTGATAACTTAATA
Found at i:8300518 original size:45 final size:44
Alignment explanation
Indices: 8300433--8300518 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 44
8300423 CTCATATATT
* *
8300433 GTAATTTATTGATAAATTAATAGTAAATAATAAATGACTTAGTC
1 GTAATTCATTGATAAATTAATAGTAAATAATAAATAACTTAGTC
* **
8300477 GTAATTCAGTTGATAACTTAATAGTAAATAATTGATAACTTA
1 GTAATTCA-TTGATAAATTAATAGTAAATAATAAATAACTTA
8300519 ATAGTTAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 7 0.19
45 29 0.81
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (44 bp):
GTAATTCATTGATAAATTAATAGTAAATAATAAATAACTTAGTC
Found at i:8300749 original size:22 final size:22
Alignment explanation
Indices: 8300699--8300835 Score: 64
Period size: 22 Copynumber: 6.2 Consensus size: 22
8300689 ATAATTTTGC
8300699 AATAAATTATTGATAACTTCAT
1 AATAAATTATTGATAACTTCAT
* *
8300721 AGA-AAATTAGTT-ATGACTTTAT
1 A-ATAAATTA-TTGATAACTTCAT
**
8300743 AATAAATTATCAATAACTT-AGT
1 AATAAATTATTGATAACTTCA-T
* * * * *
8300765 AGTAAATCATTTATAATTTAAT
1 AATAAATTATTGATAACTTCAT
* * * * *
8300787 AGTAAATCATTTATAATTTAAT
1 AATAAATTATTGATAACTTCAT
* * * *
8300809 AGTAAATCATTGATAATTTAAT
1 AATAAATTATTGATAACTTCAT
8300831 AATAA
1 AATAA
8300836 TTCACTAATA
Statistics
Matches: 98, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
21 3 0.03
22 91 0.93
23 4 0.04
ACGTcount: A:0.47, C:0.06, G:0.07, T:0.41
Consensus pattern (22 bp):
AATAAATTATTGATAACTTCAT
Found at i:8300793 original size:44 final size:44
Alignment explanation
Indices: 8300741--8300872 Score: 142
Period size: 44 Copynumber: 3.0 Consensus size: 44
8300731 TTATGACTTT
*
8300741 ATAATAAATTATCAATAACTTAGTAGTAAATCATTTATAATTTA
1 ATAATAAATTATCAATAACTTAGTAGTAAATCATTGATAATTTA
* * ** * *
8300785 ATAGTAAATCATTTATAATTTAATAGTAAATCATTGATAATTTA
1 ATAATAAATTATCAATAACTTAGTAGTAAATCATTGATAATTTA
* * *
8300829 ATAAT-AATTCA-CTAATAACATAGTAATAAATCAGTGATAATTTA
1 ATAATAAATT-ATC-AATAACTTAGTAGTAAATCATTGATAATTTA
8300873 GTTATCAATC
Statistics
Matches: 70, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
43 3 0.04
44 67 0.96
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.39
Consensus pattern (44 bp):
ATAATAAATTATCAATAACTTAGTAGTAAATCATTGATAATTTA
Found at i:8300846 original size:22 final size:22
Alignment explanation
Indices: 8300745--8300846 Score: 114
Period size: 22 Copynumber: 4.6 Consensus size: 22
8300735 GACTTTATAA
* * * *
8300745 TAAATTATCAATAACTTAGTAG
1 TAAATCATTAATAATTTAATAG
*
8300767 TAAATCATTTATAATTTAATAG
1 TAAATCATTAATAATTTAATAG
*
8300789 TAAATCATTTATAATTTAATAG
1 TAAATCATTAATAATTTAATAG
* *
8300811 TAAATCATTGATAATTTAATAA
1 TAAATCATTAATAATTTAATAG
* *
8300833 TAATTCACTAATAA
1 TAAATCATTAATAA
8300847 CATAGTAATA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 70 1.00
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (22 bp):
TAAATCATTAATAATTTAATAG
Found at i:8300874 original size:22 final size:22
Alignment explanation
Indices: 8300767--8300890 Score: 113
Period size: 22 Copynumber: 5.6 Consensus size: 22
8300757 AACTTAGTAG
* *
8300767 TAAATCATTTATAATTTAATAG
1 TAAATCATTGATAATTTAATAA
* *
8300789 TAAATCATTTATAATTTAATAG
1 TAAATCATTGATAATTTAATAA
8300811 TAAATCATTGATAATTTAATAA
1 TAAATCATTGATAATTTAATAA
* * * ** *
8300833 TAATTCACTAATAACATAGTAA
1 TAAATCATTGATAATTTAATAA
* * *
8300855 TAAATCAGTGATAATTTAGTTA
1 TAAATCATTGATAATTTAATAA
* *
8300877 TCAATCAATGATAA
1 TAAATCATTGATAA
8300891 AATTTTTTTA
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 86 1.00
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.40
Consensus pattern (22 bp):
TAAATCATTGATAATTTAATAA
Found at i:8301004 original size:22 final size:22
Alignment explanation
Indices: 8300974--8301069 Score: 69
Period size: 22 Copynumber: 4.6 Consensus size: 22
8300964 AAATTAGTTA
* *
8300974 TAATAATAAATCAATGTTAACT
1 TAATCATAAATCAATGATAACT
* * * *
8300996 TAGTCATAATTTATTGATAACT
1 TAATCATAAATCAATGATAACT
*
8301018 TAATGATAAATCAATGATAAC-
1 TAATCATAAATCAATGATAACT
*
8301039 -AAT-A-AACT-AATGATAACT
1 TAATCATAAATCAATGATAACT
*
8301057 T-ATAATAAATCAA
1 TAATCATAAATCAA
8301070 ATTTAGCTTA
Statistics
Matches: 56, Mismatches: 13, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
17 9 0.16
18 5 0.09
19 2 0.04
20 6 0.11
21 2 0.04
22 32 0.57
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.34
Consensus pattern (22 bp):
TAATCATAAATCAATGATAACT
Found at i:8301141 original size:22 final size:22
Alignment explanation
Indices: 8301099--8301141 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8301089 TATGGATAAC
*
8301099 TTAATAATAAATTATTCATATT
1 TTAATAATAAATTAGTCATATT
*
8301121 TTAATAATAAATTAGTGATAT
1 TTAATAATAAATTAGTCATAT
8301142 AACTTAGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (22 bp):
TTAATAATAAATTAGTCATATT
Found at i:8303374 original size:14 final size:14
Alignment explanation
Indices: 8303351--8303403 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
8303341 ATTTGATATA
8303351 AATTATTTAAATTTG
1 AATTA-TTAAATTTG
* *
8303366 GATTATTAAGTTTG
1 AATTATTAAATTTG
*
8303380 AATTATTATAAATTTA
1 AATTA-T-TAAATTTG
8303396 AATTATTA
1 AATTATTA
8303404 TGTTTTAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
14 14 0.45
15 6 0.19
16 11 0.35
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.51
Consensus pattern (14 bp):
AATTATTAAATTTG
Found at i:8303394 original size:30 final size:29
Alignment explanation
Indices: 8303351--8303408 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
8303341 ATTTGATATA
**
8303351 AATTATTTAAATTTGGATTATTAAGTTTG
1 AATTATTTAAATTTAAATTATTAAGTTTG
*
8303380 AATTATTATAAATTTAAATTATTATGTTT
1 AATTATT-TAAATTTAAATTATTAAGTTT
8303409 TAAAAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (29 bp):
AATTATTTAAATTTAAATTATTAAGTTTG
Found at i:8303727 original size:21 final size:21
Alignment explanation
Indices: 8303681--8303749 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
8303671 TTTTTGTCAA
*
8303681 AATTTTTTATTATTATT-TATC
1 AATTTTTTATTATT-TTAAATC
8303702 AATTTTTTATTATTTTAAAT-
1 AATTTTTTATTATTTTAAATC
* * *
8303722 ATATTTATAATTATTTTAATATT
1 A-ATTTTTTATTATTTTAA-ATC
8303745 AATTT
1 AATTT
8303750 AATAAAAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
20 3 0.07
21 31 0.76
22 6 0.15
23 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (21 bp):
AATTTTTTATTATTTTAAATC
Found at i:8304509 original size:62 final size:60
Alignment explanation
Indices: 8304416--8304567 Score: 175
Period size: 62 Copynumber: 2.5 Consensus size: 60
8304406 AACATTTTTG
* *
8304416 TAATTATAATAAAGGATATTATAATAATTTTAGTCAATCATG-G-TAGTAGAAATATTTTCA
1 TAATTATAATAAAGAATATTATAATAATTTTAATCAATCATGAGAT-G-AGAAATATTTTCA
* * *
8304476 TAATTATAATAAGAGAAATATTATAATAATTTTAATTAATTATGAGATGAGAGATATTTTCA
1 TAATTATAATAA-AG-AATATTATAATAATTTTAATCAATCATGAGATGAGAAATATTTTCA
*
8304538 TAATTATGACATAAA-AATATCATAATAATT
1 TAATTAT-A-ATAAAGAATATTATAATAATT
8304568 CGTCATTATA
Statistics
Matches: 80, Mismatches: 6, Indels: 11
0.82 0.06 0.11
Matches are distributed among these distances:
60 12 0.15
61 16 0.20
62 43 0.54
63 4 0.05
64 5 0.06
ACGTcount: A:0.47, C:0.04, G:0.10, T:0.39
Consensus pattern (60 bp):
TAATTATAATAAAGAATATTATAATAATTTTAATCAATCATGAGATGAGAAATATTTTCA
Found at i:8307549 original size:16 final size:17
Alignment explanation
Indices: 8307528--8307559 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8307518 AATTATTAAA
8307528 AAATATAT-TTTAATTT
1 AAATATATATTTAATTT
8307544 AAATATATATTTAATT
1 AAATATATATTTAATT
8307560 ATTAAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AAATATATATTTAATTT
Found at i:8307567 original size:20 final size:20
Alignment explanation
Indices: 8307512--8307569 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
8307502 TCGATTCAAG
* *
8307512 ATATTAAATTATTAAAAAAT
1 ATATTTAATTATTAAAATAT
8307532 ATATTTTAA-T-TT-AAATAT
1 ATA-TTTAATTATTAAAATAT
8307550 ATATTTAATTATTAAAATAT
1 ATATTTAATTATTAAAATAT
8307570 TGATATCTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
17 5 0.16
18 9 0.28
19 4 0.12
20 10 0.31
21 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
ATATTTAATTATTAAAATAT
Found at i:8307569 original size:18 final size:18
Alignment explanation
Indices: 8307512--8307569 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 18
8307502 TCGATTCAAG
*
8307512 ATATTAAATTATTAAAAAAT
1 ATATTTAATTATT--AAAAT
8307532 ATATTTTAA-T-TTAAATAT
1 ATA-TTTAATTATTAAA-AT
8307550 ATATTTAATTATTAAAAT
1 ATATTTAATTATTAAAAT
8307568 AT
1 AT
8307570 TGATATCTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
17 8 0.24
18 10 0.30
19 7 0.21
20 4 0.12
21 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATTTAATTATTAAAAT
Found at i:8318997 original size:16 final size:16
Alignment explanation
Indices: 8318943--8319070 Score: 138
Period size: 16 Copynumber: 8.2 Consensus size: 16
8318933 TTTATAGAAA
*
8318943 TTTGAATTTTAA-GGT
1 TTTGGATTTTAAGGGT
8318958 TTTGGATTTT-AGGGT
1 TTTGGATTTTAAGGGT
* * *
8318973 TTAGGATTTAAAGGAT
1 TTTGGATTTTAAGGGT
* *
8318989 TTTGGATTTTAGGGGG
1 TTTGGATTTTAAGGGT
8319005 TTTGGA-TTTAAGGGAT
1 TTTGGATTTTAAGGG-T
* *
8319021 TTTAGATTTTAAGGGG
1 TTTGGATTTTAAGGGT
*
8319037 TTTAGA-TTTAAGGGT
1 TTTGGATTTTAAGGGT
8319052 TTTGGATTTTAAGGGT
1 TTTGGATTTTAAGGGT
8319068 TTT
1 TTT
8319071 AGAATCCTAG
Statistics
Matches: 93, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
14 1 0.01
15 40 0.43
16 44 0.47
17 8 0.09
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.48
Consensus pattern (16 bp):
TTTGGATTTTAAGGGT
Found at i:8319072 original size:31 final size:31
Alignment explanation
Indices: 8318950--8319094 Score: 156
Period size: 32 Copynumber: 4.7 Consensus size: 31
8318940 AAATTTGAAT
8318950 TTTAA-GGTTTTGGATTTT-A-GGGTTTAGGA
1 TTTAAGGGTTTTGGATTTTAAGGGGTTTA-GA
* * *
8318979 TTTAAAGGATTTTGGATTTTAGGGGGTTTGGA
1 TTT-AAGGGTTTTGGATTTTAAGGGGTTTAGA
*
8319011 TTTAAGGGATTTTAGATTTTAAGGGGTTTAGA
1 TTTAAGGG-TTTTGGATTTTAAGGGGTTTAGA
*
8319043 TTTAAGGGTTTTGGATTTTAAGGGTTTTAGAA
1 TTTAAGGGTTTTGGATTTTAAGGGGTTTAG-A
*
8319075 TCCT-AGGGTTTTGG-TTTTAA
1 T-TTAAGGGTTTTGGATTTTAA
8319095 AAATTGAGGT
Statistics
Matches: 99, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
29 3 0.03
30 2 0.02
31 42 0.42
32 45 0.45
33 7 0.07
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.46
Consensus pattern (31 bp):
TTTAAGGGTTTTGGATTTTAAGGGGTTTAGA
Found at i:8320401 original size:11 final size:11
Alignment explanation
Indices: 8320385--8320435 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
8320375 GGGAATAGCT
8320385 GGTGGCTGTAG
1 GGTGGCTGTAG
8320396 GGTGGCTGTAAG
1 GGTGGCTGT-AG
8320408 GAGTGGCATG-A-
1 G-GTGGC-TGTAG
8320419 GGTGGGCTGTAG
1 GGT-GGCTGTAG
8320431 GGTGG
1 GGTGG
8320436 TGAGTAAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
10 4 0.12
11 16 0.47
12 7 0.21
13 5 0.15
14 2 0.06
ACGTcount: A:0.14, C:0.08, G:0.55, T:0.24
Consensus pattern (11 bp):
GGTGGCTGTAG
Found at i:8321536 original size:17 final size:17
Alignment explanation
Indices: 8321526--8321560 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8321516 AGAAGAATAG
8321526 ATAAAATAGAAAGAAAA
1 ATAAAATAGAAAGAAAA
* *
8321543 ATAAAATAAAAATAAAA
1 ATAAAATAGAAAGAAAA
8321560 A
1 A
8321561 ATTAAACATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (17 bp):
ATAAAATAGAAAGAAAA
Found at i:8322456 original size:22 final size:23
Alignment explanation
Indices: 8322407--8322457 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
8322397 TGTTATTTTA
*
8322407 ATTAAAGAACACTTCTTTTAATC
1 ATTAAAGAACACTTCTTTGAATC
8322430 A-TAAAGATAC-CTTC-TTGAATC
1 ATTAAAGA-ACACTTCTTTGAATC
8322451 ATTAAAG
1 ATTAAAG
8322458 TTATATTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 7 0.28
22 15 0.60
23 3 0.12
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (23 bp):
ATTAAAGAACACTTCTTTGAATC
Found at i:8323698 original size:1 final size:1
Alignment explanation
Indices: 8323692--8323717 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
8323682 ATACTTGCAT
8323692 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
8323718 CCTACAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8331640 original size:2 final size:2
Alignment explanation
Indices: 8331635--8331669 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8331625 AAAGAAAATG
8331635 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
8331670 TTCAAAAGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Done.