Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 42 of 147
Found at i:8492996 original size:22 final size:22
Alignment explanation
Indices: 8492958--8493001 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
8492948 TAGGTAGGAA
8492958 AAATTTTTTATCACTTTATTTTT
1 AAATTTTTTATCACTTT-TTTTT
8492981 AAATTTTTT-T-AGCTTTTTTTT
1 AAATTTTTTATCA-CTTTTTTTT
8493002 GTTATTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 6 0.30
22 5 0.25
23 9 0.45
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (22 bp):
AAATTTTTTATCACTTTTTTTT
Found at i:8494696 original size:10 final size:10
Alignment explanation
Indices: 8494681--8494784 Score: 70
Period size: 11 Copynumber: 9.8 Consensus size: 10
8494671 AAGTCAAAAG
8494681 TTTTTTTTG-
1 TTTTTTTTGT
8494690 TTTTTTTTGT
1 TTTTTTTTGT
8494700 TTTTTCTTT-T
1 TTTTT-TTTGT
*
8494710 CTTTTCTTTTCT
1 -TTTT-TTTTGT
8494722 TTTTTTTAT-T
1 TTTTTTT-TGT
8494732 TTTGTTTTTGT
1 TTT-TTTTTGT
*
8494743 TTGTATTTTTAT
1 TT-T-TTTTTGT
*
8494755 TTTTGTTTTGC
1 TTTT-TTTTGT
*
8494766 TCTTTTTTGCT
1 TTTTTTTTG-T
8494777 TTTTTTTT
1 TTTTTTTT
8494785 TAACAAAAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
9 9 0.12
10 20 0.26
11 37 0.48
12 11 0.14
ACGTcount: A:0.03, C:0.07, G:0.08, T:0.83
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:8494709 original size:5 final size:5
Alignment explanation
Indices: 8494701--8494733 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
8494691 TTTTTTTGTT
*
8494701 TTTTC TTTTC TTTTC TTTTC TTTT- TTTTA TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
8494734 TGTTTTTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (5 bp):
TTTTC
Found at i:8494751 original size:24 final size:22
Alignment explanation
Indices: 8494684--8494763 Score: 90
Period size: 24 Copynumber: 3.5 Consensus size: 22
8494674 TCAAAAGTTT
*
8494684 TTTTTGTTTTTTTTGTTTTTTC
1 TTTTTGTTTTTTTTGTTTTTTA
*
8494706 TTTTCT-TTTCTTTTCTTTTTTTTA
1 TTTT-TGTTT-TTTT-TGTTTTTTA
8494730 TTTTTGTTTTTGTTTGTATTTTTA
1 TTTTTGTTTTT-TTTGT-TTTTTA
8494754 TTTTTGTTTT
1 TTTTTGTTTT
8494764 GCTCTTTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
22 7 0.14
23 10 0.20
24 32 0.65
ACGTcount: A:0.04, C:0.05, G:0.07, T:0.84
Consensus pattern (22 bp):
TTTTTGTTTTTTTTGTTTTTTA
Found at i:8495507 original size:27 final size:26
Alignment explanation
Indices: 8495447--8495508 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
8495437 AAATTCTCAT
* *
8495447 TAAATTTTTTTTAATCGTAACTATAG
1 TAAATTTTTTTTAATCATAACTACAG
**
8495473 TAATATTTTTTTTCAATCATTGCTACAG
1 TAA-ATTTTTTTT-AATCATAACTACAG
8495501 TAAATTTT
1 TAAATTTT
8495509 ATTACTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 3 0.10
27 14 0.47
28 13 0.43
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (26 bp):
TAAATTTTTTTTAATCATAACTACAG
Found at i:8496580 original size:20 final size:20
Alignment explanation
Indices: 8496557--8496594 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8496547 CCTTTTTTGG
*
8496557 TTTTTTTTTTCAATTTTTAC
1 TTTTTTTGTTCAATTTTTAC
8496577 TTTTTTTGTTCAATTTTT
1 TTTTTTTGTTCAATTTTT
8496595 CTGCTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.76
Consensus pattern (20 bp):
TTTTTTTGTTCAATTTTTAC
Found at i:8497454 original size:20 final size:18
Alignment explanation
Indices: 8497429--8497468 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
8497419 GGACTTTATG
8497429 TTATTTGGACTTCATCATTT
1 TTATTTGG-CTT-ATCATTT
*
8497449 TTATTTGGCTTATTATTT
1 TTATTTGGCTTATCATTT
8497467 TT
1 TT
8497469 CTTATTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 3 0.16
20 8 0.42
ACGTcount: A:0.17, C:0.10, G:0.10, T:0.62
Consensus pattern (18 bp):
TTATTTGGCTTATCATTT
Found at i:8497519 original size:19 final size:19
Alignment explanation
Indices: 8497496--8497542 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
8497486 AACTTAACTT
*
8497496 TTTTATTTTATTATTTATTA
1 TTTTATTTTATTA-CTATTA
8497516 -TTTATTATTATTACTATTA
1 TTTTATT-TTATTACTATTA
8497535 TTTTATTT
1 TTTTATTT
8497543 GTGTGTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTATTTTATTACTATTA
Found at i:8498245 original size:2 final size:2
Alignment explanation
Indices: 8498238--8498267 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8498228 GTTATGTTTG
*
8498238 TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8498268 AAGGAAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:8499545 original size:34 final size:34
Alignment explanation
Indices: 8499502--8499568 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
8499492 GCTCCTACCA
8499502 TTGTCATTACTTATCATTAACAACTTATTAGCTG
1 TTGTCATTACTTATCATTAACAACTTATTAGCTG
8499536 TTGTCATTACTTATCATTAACAACTTATTAGCT
1 TTGTCATTACTTATCATTAACAACTTATTAGCT
8499569 ATCTTTGTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.45
Consensus pattern (34 bp):
TTGTCATTACTTATCATTAACAACTTATTAGCTG
Found at i:8507622 original size:15 final size:16
Alignment explanation
Indices: 8507602--8507634 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
8507592 GTTGTTTATA
8507602 GAACAACT-ATTCATG
1 GAACAACTCATTCATG
8507617 GAACAACTCATTCATG
1 GAACAACTCATTCATG
8507633 GA
1 GA
8507635 GTAGCTGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.24
Consensus pattern (16 bp):
GAACAACTCATTCATG
Found at i:8508280 original size:61 final size:59
Alignment explanation
Indices: 8508163--8508379 Score: 272
Period size: 61 Copynumber: 3.6 Consensus size: 59
8508153 TTTGTACAAA
* ** * *
8508163 AAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTCTTGATAATTTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTT-TTTTTAAATTTTAATTTTAAGG
* * * * *
8508223 AAAATTGGTACTTCCAACTTTTTCTCAAAATGTTTTTTTTTCTGAAATTTTAATTTTAAAG
1 AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTTT-T-AAATTTTAATTTTAAGG
* * * *
8508284 AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTTTTAAGTTTCAATTTCAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTTTTAAATTTTAATTTTAAGG
*
8508343 AAAATTAATACTTTCAACTTTTCCTCAAAATATTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTT
8508380 CTTGATAATT
Statistics
Matches: 135, Mismatches: 20, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
59 50 0.37
60 34 0.25
61 51 0.38
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.49
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTTTTAAATTTTAATTTTAAGG
Found at i:8508300 original size:121 final size:120
Alignment explanation
Indices: 8508163--8508379 Score: 308
Period size: 120 Copynumber: 1.8 Consensus size: 120
8508153 TTTGTACAAA
* * * * * *
8508163 AAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTCTTGATAATTTTTATTTTTAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTT-TTGATAAGTTTCAATTTCAAGAAAAAT
** * *
8508228 TGGTACTTCCAACTTTTTCTCAAAATGTTTTTTTTTCTGAAATTTTAATTTTAAAG
65 TAATACTTCCAACTTTTCCTCAAAATATTTTTTTTTCTGAAATTTTAATTTTAAAG
**
8508284 AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTTTTAAGTTTCAATTTCAAGAAAAATT
1 AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTGATAAGTTTCAATTTCAAGAAAAATT
*
8508349 AATACTTTCAACTTTTCCTCAAAATATTTTT
66 AATACTTCCAACTTTTCCTCAAAATATTTTT
8508380 CTTGATAATT
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
120 47 0.57
121 36 0.43
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.49
Consensus pattern (120 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTGATAAGTTTCAATTTCAAGAAAAATT
AATACTTCCAACTTTTCCTCAAAATATTTTTTTTTCTGAAATTTTAATTTTAAAG
Found at i:8508354 original size:59 final size:59
Alignment explanation
Indices: 8508162--8508379 Score: 267
Period size: 59 Copynumber: 3.6 Consensus size: 59
8508152 TTTTGTACAA
* ** * *
8508162 AAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTCTTGATAATTTTTATTTTTAAG
1 AAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTT-TTTTTAAATTTTAATTTTAAG
* * * * *
8508222 GAAAATTGGTACTTCCAACTTTTTCTCAAAATGTTTTTTTTTCTGAAATTTTAATTTTAA-
1 AAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTTT-T-AAATTTTAATTTTAAG
* * *
8508282 AGAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTTTTAAGTTTCAATTTCAAG
1 A-AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTTTTAAATTTTAATTTTAAG
*
8508342 AAAAATTAATACTTTCAACTTTTCCTCAAAATATTTTT
1 AAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTT
8508380 CTTGATAATT
Statistics
Matches: 135, Mismatches: 19, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
59 50 0.37
60 35 0.26
61 50 0.37
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.49
Consensus pattern (59 bp):
AAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTTTTAAATTTTAATTTTAAG
Found at i:8508405 original size:133 final size:132
Alignment explanation
Indices: 8508266--8508512 Score: 331
Period size: 133 Copynumber: 1.9 Consensus size: 132
8508256 TTTTTTTTCT
* * *
8508266 GAAATTTTA-ATTTTAAAGAAAATTGATACTTTCAAC-TTTTCCTCAAAATATTTTTTTTTTAA-
1 GAAATTTTATATTTTAAA-AAAATTAATACTTTCAACTTTTTCCT-AAAA-ATATATTTTTTAAC
*
8508328 GTTTCAATTTCAAGAAAAATTAATACTTTCAACTTTTCC-TCAAAATATTTTTCTTGATAATTTT
63 GTTTCAATTTC-AGAAAAATTAATACATTCAAC-TTTCCTTCAAAATATTTTTCTTGATAATTTT
8508392 TATTTTA
126 TATTTTA
* *
8508399 GAAATTTTATTTTTTAAAAAAATTAATACTTTCAACTTTTTCCTAAAAATATATTTTTTAACCTT
1 GAAATTTTATATTTTAAAAAAATTAATACTTTCAACTTTTTCCTAAAAATATATTTTTTAA-CGT
* * *
8508464 TTTATTTTCAGAAAAATTGATACATTCAACTTTCCTTCAAAATATTTTT
65 TTCAATTTCAGAAAAATTAATACATTCAACTTTCCTTCAAAATATTTTT
8508513 TCCTTAAATT
Statistics
Matches: 100, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
132 16 0.16
133 62 0.62
134 22 0.22
ACGTcount: A:0.36, C:0.12, G:0.04, T:0.49
Consensus pattern (132 bp):
GAAATTTTATATTTTAAAAAAATTAATACTTTCAACTTTTTCCTAAAAATATATTTTTTAACGTT
TCAATTTCAGAAAAATTAATACATTCAACTTTCCTTCAAAATATTTTTCTTGATAATTTTTATTT
TA
Found at i:8509502 original size:12 final size:12
Alignment explanation
Indices: 8509487--8509563 Score: 61
Period size: 12 Copynumber: 6.3 Consensus size: 12
8509477 ATTAATCAAG
8509487 AAAAGATAA-AAT
1 AAAA-ATAATAAT
8509499 AAAAATAATAAT
1 AAAAATAATAAT
* *
8509511 AATAGTAAT-AT
1 AAAAATAATAAT
8509522 AAATAATAAT-AT
1 AAA-AATAATAAT
* *
8509534 AACAGTAAATAAT
1 AAAAAT-AATAAT
8509547 AAAAATAAATAAT
1 AAAAAT-AATAAT
8509560 AAAA
1 AAAA
8509564 GTAAAAAAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
11 10 0.19
12 26 0.49
13 17 0.32
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.25
Consensus pattern (12 bp):
AAAAATAATAAT
Found at i:8509528 original size:18 final size:18
Alignment explanation
Indices: 8509505--8509548 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
8509495 AAATAAAAAT
*
8509505 AATAATAATAGTAATA-TA
1 AATAATAATA-TAACAGTA
8509523 AATAATAATATAACAGTA
1 AATAATAATATAACAGTA
8509541 AATAATAA
1 AATAATAA
8509549 AAATAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (18 bp):
AATAATAATATAACAGTA
Found at i:8509547 original size:21 final size:21
Alignment explanation
Indices: 8509495--8509553 Score: 64
Period size: 23 Copynumber: 2.7 Consensus size: 21
8509485 AGAAAAGATA
* *
8509495 AAATAAAAATAATAATAATAGT
1 AAATAATAATAAT-ATAACAGT
8509517 AATATAAATAATAATATAACAGT
1 AA-AT-AATAATAATATAACAGT
*
8509540 AAATAATAAAAATA
1 AAATAATAATAATA
8509554 AATAATAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 9 0.28
22 4 0.12
23 11 0.34
24 8 0.25
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (21 bp):
AAATAATAATAATATAACAGT
Found at i:8509861 original size:44 final size:43
Alignment explanation
Indices: 8509767--8510011 Score: 222
Period size: 44 Copynumber: 5.6 Consensus size: 43
8509757 CTCTAATCAG
* * * ** *
8509767 AGGCTCAACGACTTTGAAAAAAATAAATAAGGCTCATTTAATTAG
1 AGGCTCAACGACTTTG--AAAAATAAACAAAGCTCATATAAACAA
* *
8509812 AGGCTCAATGACTTTTGAAAAGTAAACAAAGCTCATATAAACAA
1 AGGCTCAACGAC-TTTGAAAAATAAACAAAGCTCATATAAACAA
* * *
8509856 AGGCTCAACGATTTTTGAAAAATAAACAAAGCTCCTATAAGCAGA
1 AGGCTCAACGA-CTTTGAAAAATAAACAAAGCTCATATAAACA-A
* * * *
8509901 A-GCTCACCGACTTTGAAAAATAAACAAAGCTCATCTAATCAG
1 AGGCTCAACGACTTTGAAAAATAAACAAAGCTCATATAAACAA
* * * * *
8509943 AGGCTTAACGACTTTGAAAAAATAAATAAAGCTCCTCTAAACAG
1 AGGCTCAACGACTTTG-AAAAATAAACAAAGCTCATATAAACAA
* * *
8509987 AGGCACCACAACTTTGAAAAATAAA
1 AGGCTCAACGACTTTGAAAAATAAA
8510012 TTGCTCCTCT
Statistics
Matches: 167, Mismatches: 28, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
42 1 0.01
43 48 0.29
44 101 0.60
45 13 0.08
46 4 0.02
ACGTcount: A:0.46, C:0.18, G:0.14, T:0.22
Consensus pattern (43 bp):
AGGCTCAACGACTTTGAAAAATAAACAAAGCTCATATAAACAA
Found at i:8509933 original size:87 final size:87
Alignment explanation
Indices: 8509825--8510011 Score: 234
Period size: 87 Copynumber: 2.1 Consensus size: 87
8509815 CTCAATGACT
* *
8509825 TTTGAAAAGTAAACAAAGCTCATATAAACAAAGGCTCAACGATTTTTG-AAAAATAAACAAAGCT
1 TTTGAAAAATAAACAAAGCTCATATAAACAAAGGCTCAACGA-CTTTGAAAAAATAAACAAAGCT
* * *
8509889 CCTATAAGCAGAAGC-TCACCGAC
65 CCTATAAACAGAAGCACCA-CAAC
* * * * *
8509912 TTTGAAAAATAAACAAAGCTCATCTAATCAGAGGCTTAACGACTTTGAAAAAATAAATAAAGCTC
1 TTTGAAAAATAAACAAAGCTCATATAAACAAAGGCTCAACGACTTTGAAAAAATAAACAAAGCTC
* *
8509977 CTCTAAACAGAGGCACCACAAC
66 CTATAAACAGAAGCACCACAAC
8509999 TTTGAAAAATAAA
1 TTTGAAAAATAAA
8510012 TTGCTCCTCT
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
86 4 0.05
87 80 0.93
88 2 0.02
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.21
Consensus pattern (87 bp):
TTTGAAAAATAAACAAAGCTCATATAAACAAAGGCTCAACGACTTTGAAAAAATAAACAAAGCTC
CTATAAACAGAAGCACCACAAC
Found at i:8509985 original size:131 final size:132
Alignment explanation
Indices: 8509749--8509990 Score: 308
Period size: 131 Copynumber: 1.8 Consensus size: 132
8509739 AAATCTTGAT
* * * * * * * *
8509749 CAAAGCTTCTCTAATCAGAGGCTCAACGACTTTGAAAAAAATAAATAAGGCTCATTTAATTAGAG
1 CAAAGCTCCTATAAGCAGAAGCTCAACGACTTTG-AAAAAATAAACAAAGCTCATCTAATCAGAG
* *
8509814 GCTCAATGACTTTTGAAAAGTAAACAAAGCTCATATAAACAAAGGCTCAACGATTTTTGAAAAAT
65 GCTCAACGACTTTTGAAAAATAAACAAAGCTCATATAAACAAAGGCTCAACGATTTTTGAAAAAT
8509879 AAA
130 AAA
*
8509882 CAAAGCTCCTATAAGCAGAAGCTCACCGACTTTG-AAAAATAAACAAAGCTCATCTAATCAGAGG
1 CAAAGCTCCTATAAGCAGAAGCTCAACGACTTTGAAAAAATAAACAAAGCTCATCTAATCAGAGG
* * * * *
8509946 CTTAACGAC-TTTGAAAAAATAAATAAAGCTCCTCTAAACAGAGGC
66 CTCAACGACTTTTG-AAAAATAAACAAAGCTCATATAAACAAAGGC
8509991 ACCACAACTT
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
130 4 0.04
131 59 0.64
133 29 0.32
ACGTcount: A:0.44, C:0.19, G:0.14, T:0.23
Consensus pattern (132 bp):
CAAAGCTCCTATAAGCAGAAGCTCAACGACTTTGAAAAAATAAACAAAGCTCATCTAATCAGAGG
CTCAACGACTTTTGAAAAATAAACAAAGCTCATATAAACAAAGGCTCAACGATTTTTGAAAAATA
AA
Found at i:8510058 original size:42 final size:42
Alignment explanation
Indices: 8509955--8510147 Score: 253
Period size: 42 Copynumber: 4.5 Consensus size: 42
8509945 GCTTAACGAC
*
8509955 TTTGAAAAAATAAATAAAGCTCCTCTAAACAGAGGCACCACAAC-
1 TTTG-AAAAATAAAT--TGCTCCTCTAAACAGAGGCACCACAACT
* * *
8509999 TTTGAAAAATAAATTGCTCCTCTAAACAAAGGCACTAAAACT
1 TTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACT
* * *
8510041 TTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACTACCATT
1 TTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACT
* *
8510083 TTTGAAAAATAAATTGCTCCTCCAAACAGAGGCAACCACGACT
1 TTTGAAAAATAAATTGCTCCTCTAAACAGAGGC-ACCACAACT
8510126 TTTGAAAAAATAAATTGCTCCT
1 TTTG-AAAAATAAATTGCTCCT
8510148 TATCAATCAT
Statistics
Matches: 134, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
41 23 0.17
42 70 0.52
43 20 0.15
44 21 0.16
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.25
Consensus pattern (42 bp):
TTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACT
Found at i:8510740 original size:83 final size:83
Alignment explanation
Indices: 8510575--8510806 Score: 358
Period size: 83 Copynumber: 2.8 Consensus size: 83
8510565 CCAAAAGTTC
* * * * * **
8510575 AAAGATTCTCATTCT-AGTTTGAAGATTCACATTCAATGAACTTTAGGGTTTCATATATCAAAGA
1 AAAGATTCTCATT-TGAGTTCGAAGATTCACATTCGAT-AAATTTTGGGTTTCACACCTCAAAGA
8510639 TTCTCATTTAAAAACATCTT
64 TTCTCATTTAAAAACATCTT
* *
8510659 AAAGATTCTCATTTGAGTTCGAAGATTTACATTCGATAAATTTTGGGCTTCACACCTCAAAGATT
1 AAAGATTCTCATTTGAGTTCGAAGATTCACATTCGATAAATTTTGGGTTTCACACCTCAAAGATT
8510724 CTCATTTAAAAACATCTT
66 CTCATTTAAAAACATCTT
8510742 AAAGATTCTCATTTGAGTTCGAAGATTCACATTCGATAAATTTTGGGTTTCACACCTCAAAGATT
1 AAAGATTCTCATTTGAGTTCGAAGATTCACATTCGATAAATTTTGGGTTTCACACCTCAAAGATT
8510807 TAAAGATTCT
Statistics
Matches: 136, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
83 104 0.76
84 32 0.24
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (83 bp):
AAAGATTCTCATTTGAGTTCGAAGATTCACATTCGATAAATTTTGGGTTTCACACCTCAAAGATT
CTCATTTAAAAACATCTT
Found at i:8511975 original size:35 final size:36
Alignment explanation
Indices: 8511936--8512016 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 36
8511926 CTCTTTCGAG
*
8511936 TTTTTAATTTGAGTATTCCTTTTTCTTCTTTCATCT
1 TTTTTCATTTGAGTATTCCTTTTTCTTCTTTCATCT
** * *
8511972 TTTTTCATTT-TTTTTTTCTTTTTCTTCTTTCAT-T
1 TTTTTCATTTGAGTATTCCTTTTTCTTCTTTCATCT
8512006 TTTTTCATTTG
1 TTTTTCATTTG
8512017 TTTTTTTCTT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
34 11 0.28
35 19 0.49
36 9 0.23
ACGTcount: A:0.10, C:0.15, G:0.04, T:0.72
Consensus pattern (36 bp):
TTTTTCATTTGAGTATTCCTTTTTCTTCTTTCATCT
Found at i:8511983 original size:9 final size:9
Alignment explanation
Indices: 8511964--8512047 Score: 56
Period size: 9 Copynumber: 9.8 Consensus size: 9
8511954 CTTTTTCTTC
8511964 TTTCATCTTT
1 TTTCAT-TTT
8511974 TTTCATTTT
1 TTTCATTTT
*
8511983 TTT-TTTCTT
1 TTTCATT-TT
*
8511992 TTTC--TTC
1 TTTCATTTT
8511999 TTTCATTTT
1 TTTCATTTT
8512008 TTTCATTTGT
1 TTTCATTT-T
*
8512018 TTT--TTTC
1 TTTCATTTT
8512025 TTT--TTTT
1 TTTCATTTT
8512032 TTTCATTTT
1 TTTCATTTT
*
8512041 CTTCATT
1 TTTCATT
8512048 CTTTCACCCA
Statistics
Matches: 61, Mismatches: 6, Indels: 15
0.74 0.07 0.18
Matches are distributed among these distances:
7 14 0.23
8 6 0.10
9 31 0.51
10 10 0.16
ACGTcount: A:0.07, C:0.14, G:0.01, T:0.77
Consensus pattern (9 bp):
TTTCATTTT
Found at i:8511985 original size:26 final size:25
Alignment explanation
Indices: 8511955--8512011 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
8511945 TGAGTATTCC
*
8511955 TTTTTCTTCTTTCATCTTTTTTCATT
1 TTTTTCTTCTTT-ATCTTCTTTCATT
* *
8511981 TTTTTTTTCTTTTTCTTCTTTCATT
1 TTTTTCTTCTTTATCTTCTTTCATT
8512006 TTTTTC
1 TTTTTC
8512012 ATTTGTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 16 0.59
26 11 0.41
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (25 bp):
TTTTTCTTCTTTATCTTCTTTCATT
Found at i:8512007 original size:22 final size:22
Alignment explanation
Indices: 8511971--8512032 Score: 61
Period size: 25 Copynumber: 2.7 Consensus size: 22
8511961 TTCTTTCATC
** *
8511971 TTTTTTCATTTTTTTTTTCTTTT
1 TTTTTTCATTTTTTTCAT-TTGT
8511994 TCTTCTTTCATTTTTTTCATTTGT
1 T-TT-TTTCATTTTTTTCATTTGT
*
8512018 TTTTTTCTTTTTTTT
1 TTTTTTCATTTTTTT
8512033 TTCATTTTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
22 11 0.33
23 3 0.09
24 6 0.18
25 13 0.39
ACGTcount: A:0.05, C:0.11, G:0.02, T:0.82
Consensus pattern (22 bp):
TTTTTTCATTTTTTTCATTTGT
Found at i:8512021 original size:35 final size:34
Alignment explanation
Indices: 8511954--8512047 Score: 147
Period size: 35 Copynumber: 2.8 Consensus size: 34
8511944 TTGAGTATTC
8511954 CTTTTTCTTCTTTCATCTTTTTTCATTTTTTTTTT
1 CTTTTTCTTCTTTCAT-TTTTTTCATTTTTTTTTT
8511989 CTTTTTCTTCTTTCATTTTTTTCATTTGTTTTTTT
1 CTTTTTCTTCTTTCATTTTTTTCATTT-TTTTTTT
*
8512024 CTTTTT-TT-TTTCATTTTCTTCATT
1 CTTTTTCTTCTTTCATTTTTTTCATT
8512048 CTTTCACCCA
Statistics
Matches: 57, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
33 15 0.26
34 13 0.23
35 29 0.51
ACGTcount: A:0.06, C:0.16, G:0.01, T:0.77
Consensus pattern (34 bp):
CTTTTTCTTCTTTCATTTTTTTCATTTTTTTTTT
Found at i:8516986 original size:14 final size:15
Alignment explanation
Indices: 8516949--8516991 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
8516939 TACTTCCTAT
8516949 ATGAGAATGATGCAA
1 ATGAGAATGATGCAA
*
8516964 ATGATAATG-TG-AA
1 ATGAGAATGATGCAA
8516977 CATGAGAATGATGCA
1 -ATGAGAATGATGCA
8516992 TATAATGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 2 0.09
14 10 0.43
15 10 0.43
16 1 0.04
ACGTcount: A:0.44, C:0.07, G:0.26, T:0.23
Consensus pattern (15 bp):
ATGAGAATGATGCAA
Found at i:8517005 original size:17 final size:17
Alignment explanation
Indices: 8516978--8517010 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8516968 TAATGTGAAC
8516978 ATGAGAATGATGCATATA
1 ATGAGAATGATG-ATATA
8516996 ATGA-AATGATGATAT
1 ATGAGAATGATGATAT
8517011 GAAAATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.30
Consensus pattern (17 bp):
ATGAGAATGATGATATA
Found at i:8518127 original size:60 final size:60
Alignment explanation
Indices: 8518060--8518297 Score: 288
Period size: 58 Copynumber: 4.0 Consensus size: 60
8518050 GCTTTTGTAA
* * *
8518060 AAGAAAAATTAATACTTTCAACTTTTCTTTAAAATGTTTTTCTTGATAATTTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTCTTTAAAATATTTTTCTTGATAATTTTTAATTTT
* * ** * *
8518120 AAGAAAAATTGATACTTTCAACTTTTCCTTAAAA-ATTTTTTTTTTCTAAAATTTTAATTTC
1 AAGAAAAATTGATACTTTCAACTTTTCTTTAAAATA-TTTTTCTTGAT-AATTTTTAATTTT
* * *
8518181 AAGAAAAATTGATACTTTCAACTTTT-TCTTAAAATATTTTTTTTG--AAGTTTCAATTTT
1 AAGAAAAATTGATACTTTCAACTTTTCT-TTAAAATATTTTTCTTGATAATTTTTAATTTT
* *
8518239 AAGAAAAATTGATACTTTCAACTTTTCTTCAAAATACTTTTCTTGATAATTTTT-ATTTT
1 AAGAAAAATTGATACTTTCAACTTTTCTTTAAAATATTTTTCTTGATAATTTTTAATTTT
8518298 GGAAATTTTA
Statistics
Matches: 152, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
58 50 0.33
59 6 0.04
60 45 0.30
61 50 0.33
62 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.05, T:0.50
Consensus pattern (60 bp):
AAGAAAAATTGATACTTTCAACTTTTCTTTAAAATATTTTTCTTGATAATTTTTAATTTT
Found at i:8518185 original size:61 final size:58
Alignment explanation
Indices: 8518060--8518273 Score: 259
Period size: 61 Copynumber: 3.6 Consensus size: 58
8518050 GCTTTTGTAA
* * * * * *
8518060 AAGAAAAATTAATACTTTCAACTTTTCTTTAAAATGTTTTTCTTGATAATTTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTC-TTAAAATTTTTTTTTTTA-AAATTTTAATTTT
*
8518120 AAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATTTTTTTTTTCTAAAATTTTAATTTC
1 AAGAAAAATTGATACTTTCAACTTTT-CTT-AAAATTTTTTTTTT-TAAAATTTTAATTTT
* * * *
8518181 AAGAAAAATTGATACTTTCAACTTTTTCTTAAAA-TATTTTTTTTGAAGTTTCAATTTT
1 AAGAAAAATTGATACTTTCAAC-TTTTCTTAAAATTTTTTTTTTTAAAATTTTAATTTT
8518239 AAGAAAAATTGATACTTTCAACTTTTCTTCAAAAT
1 AAGAAAAATTGATACTTTCAACTTTTCTT-AAAAT
8518274 ACTTTTCTTG
Statistics
Matches: 136, Mismatches: 12, Indels: 13
0.84 0.07 0.08
Matches are distributed among these distances:
57 7 0.05
58 37 0.27
59 8 0.06
60 31 0.23
61 48 0.35
62 5 0.04
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.49
Consensus pattern (58 bp):
AAGAAAAATTGATACTTTCAACTTTTCTTAAAATTTTTTTTTTTAAAATTTTAATTTT
Found at i:8518317 original size:132 final size:130
Alignment explanation
Indices: 8518168--8518424 Score: 315
Period size: 133 Copynumber: 2.0 Consensus size: 130
8518158 TTTTTTTCTA
* * * *
8518168 AAATTTTAATTTCAAGAAAAATTGATACTTTCAACTTTT-TCTTAAAATATTTTTTTTGAA-GTT
1 AAATTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTT-AACCTT
* *
8518231 TCAATTTT-AAGAAAAATTGATACTTTCAACTTT-TCTTCAAAATACTTTTCTTGATAATTTTTA
65 TCAATTTTCAA-AAAAATTGATACTTTCAACTTTCTC-CCAAAATA--TTT-TTGAAAATTTTTA
8518294 TTTTGG
125 TTTTGG
* * *
8518300 AAATTTTATTTTTAAGAAAAATTGATACTTTCAAGTTTTCCCTAAAAATATATTTTTTAACCTTT
1 AAATTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTAACCTTT
** * *
8518365 TTATTTTCAAAAAAATTGATATTTTTAACTTTCTCCCAAAATATTTTTGAAAATTTTTAT
66 CAATTTTCAAAAAAATTGATACTTTCAACTTTCTCCCAAAATATTTTTGAAAATTTTTAT
8518425 GTTCAAAAGA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
130 13 0.12
131 3 0.03
132 38 0.35
133 50 0.46
134 4 0.04
ACGTcount: A:0.35, C:0.10, G:0.05, T:0.49
Consensus pattern (130 bp):
AAATTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTAACCTTT
CAATTTTCAAAAAAATTGATACTTTCAACTTTCTCCCAAAATATTTTTGAAAATTTTTATTTTGG
Found at i:8518380 original size:59 final size:56
Alignment explanation
Indices: 8518303--8518538 Score: 228
Period size: 59 Copynumber: 4.1 Consensus size: 56
8518293 ATTTTGGAAA
* * *
8518303 TTTTATTTTTAAGAAAAATTGATACTTTCAAGTTTTCCCTAAAAATATATTTTTTAACCT
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTT-CCTCAAAA-ATATTTTTTAA--T
* * *
8518363 TTTTATTTTCAA-AAAAATTGATATTTTTAACTTTCTCC-C-AAAATATTTTTGAAAAT
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTT-TCCTCAAAAATATTTTT--TAAT
* * * * *
8518419 TTTTATGTTCAA-AAGAAATTGATACATTCAACTTTTCTTCAAAAGATTTTTTCCTTAAA
1 TTTTATTTTCAAGAA-AAATTGATACTTTCAACTTTTCCTCAAAA-ATATTTT--TTAAT
* *
8518478 TTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTATT
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAAT
8518534 TTTTA
1 TTTTA
8518539 GAAATTTTAT
Statistics
Matches: 145, Mismatches: 21, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
56 32 0.22
57 21 0.14
58 11 0.08
59 67 0.46
60 13 0.09
61 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.48
Consensus pattern (56 bp):
TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAAT
Found at i:8518449 original size:116 final size:116
Alignment explanation
Indices: 8518318--8518529 Score: 261
Period size: 116 Copynumber: 1.8 Consensus size: 116
8518308 TTTTTAAGAA
* * * *
8518318 AAATTGATACTTTCAAGTTTTCCCTAAAAATATATTTT-TTAACCTTTTTATTTTCAA-AAAAAT
1 AAATTGATACATTCAACTTTT-CCTAAAAAGATATTTTCTTAA--ATTTTATTTTCAAGAAAAAT
* *
8518381 TGATATTTTTAACTTTCTCC-C-AAAATATTTTTGAAAATTTTTATGTTCAAAAG
63 TGATACTTTCAACTTT-TCCTCAAAAATATTTTTGAAAATTTTTATGTTCAAAAG
* * * *
8518434 AAATTGATACATTCAACTTTTCTTCAAAAGATTTTTTCCTTAAATTTTATTTTCAAGGAAAATTG
1 AAATTGATACATTCAACTTTTCCTAAAAAGATATTTT-CTTAAATTTTATTTTCAAGAAAAATTG
8518499 ATACTTTCAACTTTTCCTCAAAAATATTTTT
65 ATACTTTCAACTTTTCCTCAAAAATATTTTT
8518530 TATTTTTTAG
Statistics
Matches: 81, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
115 27 0.33
116 39 0.48
117 15 0.19
ACGTcount: A:0.35, C:0.13, G:0.05, T:0.46
Consensus pattern (116 bp):
AAATTGATACATTCAACTTTTCCTAAAAAGATATTTTCTTAAATTTTATTTTCAAGAAAAATTGA
TACTTTCAACTTTTCCTCAAAAATATTTTTGAAAATTTTTATGTTCAAAAG
Found at i:8518578 original size:6 final size:6
Alignment explanation
Indices: 8518561--8518602 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
8518551 TAGGAAAATC
*
8518561 ATTAAA AATAAA ATT-AA ATT-AA ATT-AA ATTAAA ATTAAA ATT
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATT
8518603 TTAAATTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 15 0.45
6 18 0.55
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
ATTAAA
Found at i:8518579 original size:5 final size:5
Alignment explanation
Indices: 8518566--8518599 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
8518556 AAATCATTAA
*
8518566 AAATA AAATT AAATT AAATT AAATT AAAATT AAA
1 AAATT AAATT AAATT AAATT AAATT -AAATT AAA
8518600 ATTTTAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (5 bp):
AAATT
Found at i:8519494 original size:3 final size:3
Alignment explanation
Indices: 8519486--8519583 Score: 67
Period size: 3 Copynumber: 31.7 Consensus size: 3
8519476 TCAAAAAATA
* *
8519486 AAT AAT AAT AAT AAT AGT AAT -AT AAAG AAT AAT -AT AACT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA-T AAT -AAT
* * * *
8519532 AAT AGT AAAT AAT AAA AAT AAAT AAT AA- ACAA AAA AAT AAT AAT AAT
1 AAT AAT -AAT AAT AAT AAT -AAT AAT AAT A-AT AAT AAT AAT AAT AAT
8519579 AAT AA
1 AAT AA
8519584 ATGGGCCCAT
Statistics
Matches: 77, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
2 5 0.06
3 59 0.77
4 13 0.17
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:8519808 original size:15 final size:15
Alignment explanation
Indices: 8519787--8519841 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
8519777 TACCAACACT
8519787 TTTACTAAAAGCT-C
1 TTTACTAAAAGCTAC
*
8519801 TTTGACTAAAAGTTAC
1 TTT-ACTAAAAGCTAC
* *
8519817 TTTACTAAAAGTTAT
1 TTTACTAAAAGCTAC
8519832 TTTAC-AAAAG
1 TTTACTAAAAG
8519842 ATGTTTCATC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 8 0.22
15 25 0.68
16 4 0.11
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (15 bp):
TTTACTAAAAGCTAC
Found at i:8521434 original size:14 final size:15
Alignment explanation
Indices: 8521400--8521437 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
8521390 TTTATTAACT
8521400 CAAATTAAAAGTATAA
1 CAAA-TAAAAGTATAA
*
8521416 AAAATAAAA-TATAA
1 CAAATAAAAGTATAA
8521430 CAAATAAA
1 CAAATAAA
8521438 TAATTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 5 0.25
16 3 0.15
ACGTcount: A:0.71, C:0.05, G:0.03, T:0.21
Consensus pattern (15 bp):
CAAATAAAAGTATAA
Found at i:8522187 original size:24 final size:24
Alignment explanation
Indices: 8522159--8522207 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
8522149 TTTAATTTTG
* *
8522159 TTTATTTATTCAGCATCTTAATGA
1 TTTATTTAGTAAGCATCTTAATGA
*
8522183 TTTATTTCGTAAGCATCTTAATGA
1 TTTATTTAGTAAGCATCTTAATGA
8522207 T
1 T
8522208 GGGTTGACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.49
Consensus pattern (24 bp):
TTTATTTAGTAAGCATCTTAATGA
Found at i:8522448 original size:31 final size:27
Alignment explanation
Indices: 8522404--8522478 Score: 71
Period size: 31 Copynumber: 2.6 Consensus size: 27
8522394 TAATTTAGTA
*
8522404 AAAATAGATATTTAAAAGTTT-AATAGATTT
1 AAAATA-AAATTTAAAA-TTTGAATA-A-TT
8522434 AAAATAAAAAATTTAAAATTTGAATAATT
1 AAAAT--AAAATTTAAAATTTGAATAATT
*
8522463 ATAATAAAATTTAAAA
1 AAAATAAAATTTAAAA
8522479 AATCATTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
27 11 0.28
29 6 0.15
30 9 0.22
31 13 0.32
32 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (27 bp):
AAAATAAAATTTAAAATTTGAATAATT
Found at i:8523429 original size:15 final size:15
Alignment explanation
Indices: 8523409--8523454 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
8523399 GTCCGCTACC
8523409 TACCCAAATATTTTA
1 TACCCAAATATTTTA
*
8523424 TACCCAAATATTGTA
1 TACCCAAATATTTTA
8523439 TACCCAAATATTTTA
1 TACCCAAATATTTTA
8523454 T
1 T
8523455 GTTCTTTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.39
Consensus pattern (15 bp):
TACCCAAATATTTTA
Found at i:8525124 original size:25 final size:26
Alignment explanation
Indices: 8525069--8525136 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 26
8525059 TATACACCGG
*
8525069 TGTAAAATAACAATAATAATAACTTTA
1 TGTAAAATAATAA-AATAATAACTTTA
*
8525096 --TAAAATAATAAAATAATGA-TTTA
1 TGTAAAATAATAAAATAATAACTTTA
* *
8525119 TGTAAAAAAATAATATAA
1 TGTAAAATAATAAAATAA
8525137 AGTATTATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
23 4 0.11
24 7 0.20
25 24 0.69
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.32
Consensus pattern (26 bp):
TGTAAAATAATAAAATAATAACTTTA
Found at i:8528263 original size:3 final size:3
Alignment explanation
Indices: 8528255--8528306 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
8528245 TAAAACATCA
8528255 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8528303 AAT A
1 AAT A
8528307 TATGATTGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8530198 original size:2 final size:2
Alignment explanation
Indices: 8530191--8530218 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8530181 CCAATTTAAC
8530191 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8530219 AACAAACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8530728 original size:15 final size:17
Alignment explanation
Indices: 8530703--8530734 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8530693 TGGTTAAGGG
8530703 ATGATGCTC-TTATTTT
1 ATGATGCTCTTTATTTT
8530719 ATGA-GCTCTTTATTTT
1 ATGATGCTCTTTATTTT
8530735 CATTTTATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.56
Consensus pattern (17 bp):
ATGATGCTCTTTATTTT
Found at i:8530816 original size:10 final size:10
Alignment explanation
Indices: 8530783--8530817 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
8530773 ACGCTTACAC
8530783 ATATAAATAT
1 ATATAAATAT
8530793 ATAT--ATAT
1 ATATAAATAT
8530801 ATATAAATAT
1 ATATAAATAT
8530811 ATATAAA
1 ATATAAA
8530818 GCCATGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 8 0.35
10 15 0.65
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATAAATAT
Found at i:8531133 original size:17 final size:17
Alignment explanation
Indices: 8531111--8531143 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8531101 TTTTGATTTG
8531111 AATTTAAATAATTATTA
1 AATTTAAATAATTATTA
*
8531128 AATTTATATAATTATT
1 AATTTAAATAATTATT
8531144 CAAACATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
AATTTAAATAATTATTA
Found at i:8531290 original size:17 final size:17
Alignment explanation
Indices: 8531268--8531304 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
8531258 AATAACTTTG
8531268 TATCTTATAAGATAATA
1 TATCTTATAAGATAATA
*
8531285 TATCTTATAATATAATA
1 TATCTTATAAGATAATA
8531302 TAT
1 TAT
8531305 ATATATATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (17 bp):
TATCTTATAAGATAATA
Found at i:8531799 original size:2 final size:2
Alignment explanation
Indices: 8531783--8531823 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
8531773 CTTTGTATCC
*
8531783 TA TA -A TA TA -A TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8531823 T
1 T
8531824 GTAAAGCAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8531971 original size:511 final size:509
Alignment explanation
Indices: 8530783--8534800 Score: 5300
Period size: 511 Copynumber: 7.8 Consensus size: 509
8530773 ACGCTTACAC
* * * * *
8530783 ATATAAATATATATATATATATAAATATATATAAAGCCATGATTAAATTTGAAAAGAGAAGATAA
1 ATATATATATATATATATATATATATATATGTAAAGCAATGATTAAATTTGAAAAGAAAAGATAA
* *
8530848 ATTATGATTTAATATATTTAAATTTAAAATTTATGTAAAATTTTTAATTTTTAATAAAGTTTGAT
66 ATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATTTTTAATTTTTGATAAAGTTTGAT
*
8530913 TTGAATTTAAAT-GATTACCCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGAC
131 TTGAATTTAAATAG-TTACTCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGA-
* * *
8530977 AAG-AAATAAAAGTTTATTAAGCCTATATATATTTGGAATTATGATTAAATTAAAAAAGAAAGAT
194 TAGCAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATT--AAAA-AAAGAT
8531041 AATTTATAATTTAATATATTTGAATTTAAAATTTATGTAAAATTTTCAATATTTTATAGATTTTG
256 AATTTATAATTTAATATATTTGAATTTAAAATTTATGTAAAATTTTCAATATTTTATAGATTTTG
8531106 ATTTGAATTTAAATAATTATTAAATTTATATAATTATTCAAACATATTAAATTTAAATAATTTAT
321 ATTTGAATTTAAATAATTATTAAATTTATATAATTATTCAAACATATTAAATTTAAATAATTTAT
* ** * *
8531171 TAAATATAGTTACTTGATAAATAATAT--TAT-CCTA-TA---T-C---TCATAAAGAGAGACTA
386 TAAATAGAGTTACTTGATAAATAATATAATATAAATATTATCCTACGTGTCATAAAAAGAGATTA
* * * * * *
8531225 TTCACATAAGTATTCATGTCAGCATATC-TGTCCAATAACTTTGTATCTTATAAGATAAT
451 TCCACAT-AGTATCCATGTCAGCACATCTTGTCCAATAACTTTATATCATATAATATAAT
* *
8531284 ATATCT-TATA-ATATAATATATATATATATGTAAAGCTATGATTAAATTTGAAAAGAAAAGATA
1 ATATATATATATATAT-ATATATATATATATGTAAAGCAATGATTAAATTTGAAAAGAAAAGATA
* *
8531347 AATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATTTGTAATTTTTTATAAAGTTTGA
65 AATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATTTTTAATTTTTGATAAAGTTTGA
*
8531412 TTTGAATTTAAATAGTTACCCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGAT
130 TTTGAATTTAAATAGTTACTCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGAT
* *
8531477 AGTAAATAAAAATTTATTAAGCCTATATATATTTGAAATTATAATTAAATTAAAAAAGAAAGATA
195 AGCAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATT--AAAA-AAAGATA
8531542 ATTTATAATTTAATATATTTGAATTTAAAATTTATGTAAAATTTTCAATA-TTTATAGATTTTGA
257 ATTTATAATTTAATATATTTGAATTTAAAATTTATGTAAAATTTTCAATATTTTATAGATTTTGA
* *
8531606 TTTGAATTTAAATAATTATTAAATTTATATAATTATCCAAACATATTAAACTTAAATAATTTATT
322 TTTGAATTTAAATAATTATTAAATTTATATAATTATTCAAACATATTAAATTTAAATAATTTATT
* * * * *
8531671 AAATAGAATTACTTGATGAATAATATAATATAAATATTATTCTACGTGTCATAAAGAGAGAATAT
387 AAATAGAGTTACTTGATAAATAATATAATATAAATATTATCCTACGTGTCATAAAAAGAGATTAT
* * * * * * *
8531736 CCACATAGCATCCATGTTAGTACATCTTATCCGATAACTTTGTATCCTATAATATAAT
452 CCACATAGTATCCATGTCAGCACATCTTGTCCAATAACTTTATATCATATAATATAAT
*
8531794 ATATATATATATATATATATTTATATATATGTAAAGCAATGATTAAATTTGAAAAGAAAAGATAA
1 ATATATATATATATATATATATATATATATGTAAAGCAATGATTAAATTTGAAAAGAAAAGATAA
* * *
8531859 GTTATGATTTAATATTTTTAAATTCAAAATTTATGTAAAACTTTTAATTTTTGATAAAGTTTGAT
66 ATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATTTTTAATTTTTGATAAAGTTTGAT
*
8531924 TTGAATTTAAATAGTTACTCAAAAATATCTAATTTATATAATTTATTAAATAAAATTATTTGATA
131 TTGAATTTAAATAGTTACTCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGATA
* *
8531989 GCAAATAAAAGTTTATTAAGCCTATATGTATTTGGAATTATAATTAAATTAAAAAAAAAAGATAA
196 GCAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATT---AAAAAAAGATAA
* *
8532054 TTTATAATTTAATATATTTGAATTTAAATTTTATGTAAAATTTTCAATATTTTATATATTTTGAT
258 TTTATAATTTAATATATTTGAATTTAAAATTTATGTAAAATTTTCAATATTTTATAGATTTTGAT
*
8532119 TTGAATTTAAATAATTATCCAAACATATTAAATTTATATAATTATTCAAACATATAAAATTTAAA
323 TTGAATTTAAAT-A--AT-------TATTAAATTTATATAATTATTCAAACATATTAAATTTAAA
8532184 TAATTTATTAAATAGAGTTACTTGATAAATAATATAATATAAATATTATCCTACGTGTCATAAAA
378 TAATTTATTAAATAGAGTTACTTGATAAATAATATAATATAAATATTATCCTACGTGTCATAAAA
** * * * * * *
8532249 AGAGATTATCTGCATAGGTGTCCATATCAACACATTTTGTCTAATAACTTTATATTATAT-A-AT
443 AGAGATTATCCACATA-GTATCCATGTCAGCACATCTTGTCCAATAACTTTATATCATATAATAT
8532312 -AT
507 AAT
* * *
8532314 A-ATATATAT-TAGATATATATATATATATGTAAAGCTATGAATAAATTTGAAAAGAAAAGATAA
1 ATATATATATATATATATATATATATATATGTAAAGCAATGATTAAATTTGAAAAGAAAAGATAA
* * * *
8532377 ATTATGATTTTATATATTTAAATTTAAAATTTATGTAAAATTTTTAATTTTTTATAAATTTTGAT
66 ATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATTTTTAATTTTTGATAAAGTTTGAT
*
8532442 TTGAATTTAAATAGTTA-TCCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGAC
131 TTGAATTTAAATAGTTACT-CAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGAT
* *
8532506 AACAAATAAAAATTTATTAAGCTTATATATATTTGGAATTATAATTAAATTAAAAAAAGATAATT
195 AGCAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATTAAAAAAAGATAATT
** * *
8532571 TATAATTTAATATATTTGAATTTAAAATTTATAAAAAAATTTT-AATATTTTTTAGATTATGATT
260 TATAATTTAATATATTTGAATTTAAAATTTAT-GTAAAATTTTCAATATTTTATAGATTTTGATT
* * *
8532635 TGACTTTAAATAATTGTTAAATTTATATCATTATTCAAACATATTAAATTTAAATAATTTATTAA
324 TGAATTTAAATAATTATTAAATTTATATAATTATTCAAACATATTAAATTTAAATAATTTATTAA
* * ** *
8532700 ATAGAGTTACTTAATAAATAAAATAATATAAATATTATTTTACGTGTCATAAAAAGAGAATATCC
389 ATAGAGTTACTTGATAAATAATATAATATAAATATTATCCTACGTGTCATAAAAAGAGATTATCC
** * * * * *
8532765 ACATAACATCCATGTTAGCACATCTTATCCGATTATTTTATATCCTGTAATATAATATATATAT
454 ACATAGTATCCATGTCAGCACATCTTGTCCAATAACTTTATAT-C----ATAT-A-ATATA-AT
*
8532829 ATATATATATTAGAATATTATATATATATATATATGTAATGCAATGATTAAATTTGAAAAGAAAA
1 ATATATATA-T---ATA-TATATATATATATATATGTAAAGCAATGATTAAATTTGAAAAGAAAA
* *
8532894 GATAAGTTATGATTTAATATTTTTAAATTCAAAATTTATGTAAAATTTTTAATTTTTGATAAAGT
61 GATAAATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATTTTTAATTTTTGATAAAGT
* *
8532959 TTGATTTAAATTTAAATAGTTACTCAAAAATATCTAA-TTATATAATTTATTAAATAAAATTATT
126 TTGATTTGAATTTAAATAGTTACTCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATT
* *
8533023 TGATAGCAAATAAAAGTTTATTAAGCCTATATGTATTTGGAATTATAATTAAATTAAAAAAAGAT
191 TGATAGCAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATTAAAAAAAGAT
8533088 AATTTATAATTTAATATATTTGAATTTAAAATTTATGT-AAATTTTCAATATTTTATAGATTTTG
256 AATTTATAATTTAATATATTTGAATTTAAAATTTATGTAAAATTTTCAATATTTTATAGATTTTG
*
8533152 ATTTGAATTTAAATAATTATCCAAACATATTAAATTTATATAATTATTCAAACATATAAAATTTA
321 ATTTGAATTTAAAT-A--AT-------TATTAAATTTATATAATTATTCAAACATATTAAATTTA
*
8533217 AATAATTTATTAAATAGAGTTACTTGATAAATAATATAATATAAATATTATCCTACATGTCATAA
376 AATAATTTATTAAATAGAGTTACTTGATAAATAATATAATATAAATATTATCCTACGTGTCATAA
** * * * * *
8533282 AAAGAGATTATCTGCATAGGTGTCCATATCAGCACATTTTGTCTAATAACTTTATATTATATAAT
441 AAAGAGATTATCCACATA-GTATCCATGTCAGCACATCTTGTCCAATAACTTTATATCATATAAT
8533347 ATAAT
505 ATAAT
* * *
8533352 ATATATTAGATATATATATATATATATATATGTAAAGCTATGAATAAATTTGAAAAGAAAAGATA
1 ATATA-TATATATATATATATATATATATATGTAAAGCAATGATTAAATTTGAAAAGAAAAGATA
* * * *
8533417 AATTATGATTTTATATATTTAAATTTAAAATTTATGTAAAATTTTTAATTTTTTATAAATTTTGA
65 AATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATTTTTAATTTTTGATAAAGTTTGA
8533482 TTTGAATTTAAATAGTTA-TCCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGA
130 TTTGAATTTAAATAGTTACT-CAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGA
* * *
8533546 CAACAAATAAAAATTTATTAAGCTTATATATATTTGGAATTATAATTAAATTAAAAAAAGATAAT
194 TAGCAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATTAAAAAAAGATAAT
* * *
8533611 TTATAATTTAATATATTTGAATTTAAAATTTATATAAAAATTTT-AATATTTTTTAGATTATGAT
259 TTATAATTTAATATATTTGAATTTAAAATTTATGT-AAAATTTTCAATATTTTATAGATTTTGAT
* *
8533675 TTGACTTTAAATAATTATTAAATTTATATCATTATTCAAACATATTAAATTTAAATAATTTATTA
323 TTGAATTTAAATAATTATTAAATTTATATAATTATTCAAACATATTAAATTTAAATAATTTATTA
* * * * * * *
8533740 AATAAAATTACTTAATAAATAAAATAATATAAATATTATTCTA-TTGTCATAAAAAGAGACTATC
388 AATAGAGTTACTTGATAAATAATATAATATAAATATTATCCTACGTGTCATAAAAAGAGATTATC
** * * * *
8533804 CACATAACATCCATGTTAGCACATCTTATTCGATAGTTTTATATCTTGTAATATAATATATATAT
453 CACATAGTATCCATGTCAGCACATCTT-GTCCA-A----TA-A-CTT-T-ATATCATATA-ATAT
8533869 ATAT
507 A-AT
*
8533873 ATATATATATATTAGAATATTATATATATATATATGTAATGCAATGATTAAATTTGAAAAGAAAA
1 ATATATATATA-T---ATA-TATATATATATATATGTAAAGCAATGATTAAATTTGAAAAGAAAA
* * *
8533938 GATAAATTATGATTTAATATTTTTAAATTCAAAATTTATGTAAAATATTTAATTTTTGATAAAAT
61 GATAAATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATTTTTAATTTTTGATAAAGT
* *
8534003 TTGATTTGAATTTAAATAGTTACTCAAAAATATCTAATTTATACAATTTATTAAATAAAATTATT
126 TTGATTTGAATTTAAATAGTTACTCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATT
* *
8534068 TGATAGCAAATAAAAGTTTATTAAGCCTATATATGTTTGGAATTATAATTAAATTAAAAAAAGAT
191 TGATAGCAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATTAAAAAAAGAT
*
8534133 AATTTATAATTTAATATATTTGAATTTAAAATTTATGTAAAATTTTTAATATTTTATAGATTTTG
256 AATTTATAATTTAATATATTTGAATTTAAAATTTATGTAAAATTTTCAATATTTTATAGATTTTG
*
8534198 ATTTGAATTTAAATAATTATCCAAACAGATTAAATTTATATAATTATTCAAACATATCAAATTTA
321 ATTTGAATTTAAATAA-T-T--------ATTAAATTTATATAATTATTCAAACATATTAAATTTA
* * * *
8534263 AATAATTTATTAAATAGAGTTACTTAATAAATAATATACTATAAATATTATCCCATGTGTCATAA
376 AATAATTTATTAAATAGAGTTACTTGATAAATAATATAATATAAATATTATCCTACGTGTCATAA
* ** * * * * ** * * * *
8534328 AGAGTTATTATCTACATATGTGTCTATATCAATACATTTTGTCCAATAATTTTATGTCCTATAAT
441 AAAGAGATTATCCACATA-GTATCCATGTCAGCACATCTTGTCCAATAACTTTATATCATATAAT
8534393 ATAAT
505 ATAAT
* ** *
8534398 ATA-CT-T-TGGATATATATATATATATGTGTAAAGC------T--A--T-----G---A-ATAA
1 ATATATATATATATATATATATATATATATGTAAAGCAATGATTAAATTTGAAAAGAAAAGATAA
* * * *
8534441 ATTATGATTTTATATATTTAAATTTAAAATTTATGTAAAATTTTTAATTTTTGATAAATTTTAAT
66 ATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATTTTTAATTTTTGATAAAGTTTGAT
* *
8534506 TTGAATTTAAATAGTTATTCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGACA
131 TTGAATTTAAATAGTTACTCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGATA
* *
8534571 GCAAATAAAAATTTATTAAGCTTATATATATTTAGAATTATAATTAAATT-AAAAAAGATAATTT
196 GCAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATTAAAAAAAGATAATTT
* * *
8534635 ATAATTTAATATGTTTGAATTTAAAATTTATATAAAAATTTT-AATATGTTT-TAGATTATGATT
261 ATAATTTAATATATTTGAATTTAAAATTTATGT-AAAATTTTCAATAT-TTTATAGATTTTGATT
*
8534698 TAAATTTAAATAATTATTAAATTTATATAATTATTCAAACATATTAAATTTAAATAATTTATTAA
324 TGAATTTAAATAATTATTAAATTTATATAATTATTCAAACATATTAAATTTAAATAATTTATTAA
* *
8534763 ATAGAATTACATGATAAATAATATAATATAAATATTAT
389 ATAGAGTTACTTGATAAATAATATAATATAAATATTAT
8534801 GTATCATGAA
Statistics
Matches: 3135, Mismatches: 281, Indels: 216
0.86 0.08 0.06
Matches are distributed among these distances:
487 83 0.03
495 1 0.00
496 1 0.00
497 73 0.02
498 181 0.06
499 107 0.03
500 281 0.09
501 8 0.00
502 3 0.00
503 2 0.00
504 26 0.01
505 111 0.04
506 1 0.00
507 2 0.00
509 35 0.01
510 79 0.03
511 364 0.12
512 39 0.01
513 3 0.00
514 1 0.00
515 80 0.03
516 16 0.01
517 25 0.01
518 222 0.07
519 160 0.05
520 170 0.05
521 165 0.05
522 255 0.08
523 42 0.01
524 20 0.01
525 296 0.09
526 11 0.00
527 8 0.00
528 1 0.00
529 2 0.00
530 111 0.04
531 29 0.01
535 85 0.03
536 24 0.01
537 12 0.00
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (509 bp):
ATATATATATATATATATATATATATATATGTAAAGCAATGATTAAATTTGAAAAGAAAAGATAA
ATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATTTTTAATTTTTGATAAAGTTTGAT
TTGAATTTAAATAGTTACTCAAAAATATTTAATTTATATAATTTATTAAATAAAATTATTTGATA
GCAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATTAAAAAAAGATAATTT
ATAATTTAATATATTTGAATTTAAAATTTATGTAAAATTTTCAATATTTTATAGATTTTGATTTG
AATTTAAATAATTATTAAATTTATATAATTATTCAAACATATTAAATTTAAATAATTTATTAAAT
AGAGTTACTTGATAAATAATATAATATAAATATTATCCTACGTGTCATAAAAAGAGATTATCCAC
ATAGTATCCATGTCAGCACATCTTGTCCAATAACTTTATATCATATAATATAAT
Found at i:8532153 original size:27 final size:27
Alignment explanation
Indices: 8532122--8532188 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
8532112 TTTTGATTTG
*
8532122 AATTTAAATAATTATCCAAACATATTA
1 AATTTAAATAATTATCCAAACATATAA
* *
8532149 AATTTATATAATTATTCAAACATATAA
1 AATTTAAATAATTATCCAAACATATAA
8532176 AATTTAAATAATT
1 AATTTAAATAATT
8532189 TATTAAATAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (27 bp):
AATTTAAATAATTATCCAAACATATAA
Found at i:8532339 original size:21 final size:19
Alignment explanation
Indices: 8532299--8532341 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
8532289 CTAATAACTT
*
8532299 TATATTATATAATATAATA
1 TATATTAGATAATATAATA
8532318 TATATTAGAT-ATATATATA
1 TATATTAGATAATATA-ATA
8532337 TATAT
1 TATAT
8532342 GTAAAGCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
TATATTAGATAATATAATA
Found at i:8532826 original size:2 final size:2
Alignment explanation
Indices: 8532814--8532863 Score: 63
Period size: 2 Copynumber: 27.0 Consensus size: 2
8532804 ATATCCTGTA
*
8532814 AT AT A- AT AT AT AT AT AT AT AT AT AT -T AG A- AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8532852 AT AT AT AT AT AT
1 AT AT AT AT AT AT
8532864 GTAATGCAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
1 4 0.09
2 39 0.91
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8533188 original size:27 final size:27
Alignment explanation
Indices: 8533157--8533223 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
8533147 TTTTGATTTG
*
8533157 AATTTAAATAATTATCCAAACATATTA
1 AATTTAAATAATTATCCAAACATATAA
* *
8533184 AATTTATATAATTATTCAAACATATAA
1 AATTTAAATAATTATCCAAACATATAA
8533211 AATTTAAATAATT
1 AATTTAAATAATT
8533224 TATTAAATAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (27 bp):
AATTTAAATAATTATCCAAACATATAA
Found at i:8533355 original size:2 final size:2
Alignment explanation
Indices: 8533334--8533382 Score: 61
Period size: 2 Copynumber: 26.5 Consensus size: 2
8533324 CTAATAACTT
*
8533334 TA TA T- TA TA TA -A TA TA -A TA TA TA T- TA GA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8533372 TA TA TA TA TA T
1 TA TA TA TA TA T
8533383 GTAAAGCTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
1 4 0.10
2 37 0.90
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:8533374 original size:21 final size:19
Alignment explanation
Indices: 8533334--8533378 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
8533324 CTAATAACTT
*
8533334 TATATTATATAATATAATA
1 TATATTAGATAATATAATA
8533353 TATATTAGATATATATATATA
1 TATATTAGATA-ATATA-ATA
8533374 TATAT
1 TATAT
8533379 ATATGTAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.43
20 5 0.22
21 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
TATATTAGATAATATAATA
Found at i:8533380 original size:10 final size:10
Alignment explanation
Indices: 8533334--8533382 Score: 61
Period size: 9 Copynumber: 5.3 Consensus size: 10
8533324 CTAATAACTT
8533334 TATAT-TATA
1 TATATATATA
8533343 TA-ATATA-A
1 TATATATATA
8533351 TATATAT-TA
1 TATATATATA
*
8533360 GATATATATA
1 TATATATATA
8533370 TATATATATA
1 TATATATATA
8533380 TAT
1 TAT
8533383 GTAAAGCTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
8 5 0.15
9 15 0.44
10 14 0.41
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (10 bp):
TATATATATA
Found at i:8533866 original size:2 final size:2
Alignment explanation
Indices: 8533854--8533907 Score: 71
Period size: 2 Copynumber: 29.0 Consensus size: 2
8533844 ATATCTTGTA
*
8533854 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT -T AG A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8533893 -T AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
8533908 GTAATGCAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
1 4 0.09
2 43 0.91
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8534010 original size:525 final size:530
Alignment explanation
Indices: 8531783--8534328 Score: 3246
Period size: 525 Copynumber: 4.9 Consensus size: 530
8531773 CTTTGTATCC
* * *
8531783 TATAATATAATATATA-TATATATATATATATTTATATATATGTAAAGCAATGATTAAATTTGAA
1 TATAATATAATATATATTAGATATATATATATATATATATATGTAAAGCAATGAATAAATTTGAA
* *
8531847 AAGAAAAGATAAGTTATGATTTAATATTTTTAAATTCAAAATTTATGTAAAACT-TTTAATTTTT
66 AAGAAAAGATAAATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAA-TATTTAATTTTT
* *
8531911 GATAAAGTTTGATTTGAATTTAAATAGTTACTCAAAAATATCTAATTTATATAATTTATTAAATA
130 GATAAAATTTGATTTGAATTTAAATAGTTACTCAAAAATATCTAATTTATACAATTTATTAAATA
* * * *
8531976 AAATTATTTGATAGCAAATAAAAGTTTATTAAGCCTATATGTATTTGGAATTATAATTAAATTAA
195 AAATTATTTGACAACAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATT--
* *
8532041 AAAAAAAAGATAATTTATAATTTAATATATTTGAATTTAAATTTTATGT-AAAATTTTCAATATT
258 -AAAAAAAGATAATTTATAATTTAATATATTTGAATTTAAAATTTATATAAAAATTTT-AATATT
* *
8532105 TTATATATTTTGATTTGAATTTAAATAATTATCCAAACATATTAAATTTATATAATTATTCAAAC
321 TTATAGATTATGATTTGAATTTAAATAATTAT------A-ATTAAATTTATATAATTATTCAAAC
* * * * *
8532170 ATATAAAATTTAAATAATTTATTAAATAGAGTTACTTGATAAATAATATAATATAAATATTATCC
379 ATATCAAATTTAAATAATTTATTAAATAAAATTACTTAATAAATAAAATAATATAAATATTATCC
* * * ** *** * * *
8532235 TACGTGTCATAAAAAGAGATTATCTGCATAGGTGTCCATATCAACACAT-TT-TGTC--TA----
444 CATGTGTCATAAAAAGAGACTATCCACATA-ACATCCATGTTAGCACATCTTAT-TCGATAGTTT
*
8532292 -ATA------ACT-T--TATATTA
507 TATATCTTGTAATATAATATATTA
*
8532306 TATAATATAATATATATTAG------ATATATATATATATATGTAAAGCTATGAATAAATTTGAA
1 TATAATATAATATATATTAGATATATATATATATATATATATGTAAAGCAATGAATAAATTTGAA
* * * *
8532365 AAGAAAAGATAAATTATGATTTTATATATTTAAATTTAAAATTTATGTAAAATTTTTAATTTTTT
66 AAGAAAAGATAAATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATATTTAATTTTTG
* * *
8532430 ATAAATTTTGATTTGAATTTAAATAGTTA-TCCAAAAATATTTAATTTATATAATTTATTAAATA
131 ATAAAATTTGATTTGAATTTAAATAGTTACT-CAAAAATATCTAATTTATACAATTTATTAAATA
*
8532494 AAATTATTTGACAACAAATAAAAATTTATTAAGCTTATATATATTTGGAATTATAATTAAATTAA
195 AAATTATTTGACAACAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATTAA
* *
8532559 AAAAAGATAATTTATAATTTAATATATTTGAATTTAAAATTTATAAAAAAATTTTAATATTTTTT
260 AAAAAGATAATTTATAATTTAATATATTTGAATTTAAAATTTATATAAAAATTTTAATATTTTAT
* * * *
8532624 AGATTATGATTTGACTTTAAATAA-T-T-GTTAAATTTATATCATTATTCAAACATATTAAATTT
325 AGATTATGATTTGAATTTAAATAATTATAATTAAATTTATATAATTATTCAAACATATCAAATTT
* * *** *
8532686 AAATAATTTATTAAATAGAGTTACTTAATAAATAAAATAATATAAATATTATTTTACGTGTCATA
390 AAATAATTTATTAAATAAAATTACTTAATAAATAAAATAATATAAATATTATCCCATGTGTCATA
* * *
8532751 AAAAGAGAATATCCACATAACATCCATGTTAGCACATCTTATCCGATTA-TTTTATATCCTGTAA
455 AAAAGAGACTATCCACATAACATCCATGTTAGCACATCTTATTCGA-TAGTTTTATATCTTGTAA
8532815 TAT-A-ATA-TA
519 TATAATATATTA
* *
8532824 TAT-ATAT-ATATATATTAGA-ATATTATATATATATATATATGTAATGCAATGATTAAATTTGA
1 TATAATATAATATATATTAGATATA-TATATATATATATATATGTAAAGCAATGAATAAATTTGA
* * *
8532886 AAAGAAAAGATAAGTTATGATTTAATATTTTTAAATTCAAAATTTATGTAAAATTTTTAATTTTT
65 AAAGAAAAGATAAATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATATTTAATTTTT
* * *
8532951 GATAAAGTTTGATTTAAATTTAAATAGTTACTCAAAAATATCTAA-TTATATAATTTATTAAATA
130 GATAAAATTTGATTTGAATTTAAATAGTTACTCAAAAATATCTAATTTATACAATTTATTAAATA
* * * *
8533015 AAATTATTTGATAGCAAATAAAAGTTTATTAAGCCTATATGTATTTGGAATTATAATTAAATTAA
195 AAATTATTTGACAACAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATTAA
*
8533080 AAAAAGATAATTTATAATTTAATATATTTGAATTTAAAATTTATGT--AAATTTTCAATATTTTA
260 AAAAAGATAATTTATAATTTAATATATTTGAATTTAAAATTTATATAAAAATTTT-AATATTTTA
*
8533143 TAGATTTTGATTTGAATTTAAATAATTATCCAAACATATTAAATTTATATAATTATTCAAACATA
324 TAGATTATGATTTGAATTTAAATAATTAT------A-ATTAAATTTATATAATTATTCAAACATA
* * * * * * *
8533208 TAAAATTTAAATAATTTATTAAATAGAGTTACTTGATAAATAATATAATATAAATATTATCCTAC
382 TCAAATTTAAATAATTTATTAAATAAAATTACTTAATAAATAAAATAATATAAATATTATCCCAT
* * ** *** * *
8533273 ATGTCATAAAAAGAGATTATCTGCATAGGTGTCCATATCAGCACAT-TT-TGTC--TA-----AT
447 GTGTCATAAAAAGAGACTATCCACATA-ACATCCATGTTAGCACATCTTAT-TCGATAGTTTTAT
*
8533329 A------ACT-T--TATATTA
510 ATCTTGTAATATAATATATTA
*
8533341 TATAATATAATATATATTAGATATATATATATATATATATATGTAAAGCTATGAATAAATTTGAA
1 TATAATATAATATATATTAGATATATATATATATATATATATGTAAAGCAATGAATAAATTTGAA
* * * *
8533406 AAGAAAAGATAAATTATGATTTTATATATTTAAATTTAAAATTTATGTAAAATTTTTAATTTTTT
66 AAGAAAAGATAAATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATATTTAATTTTTG
* * *
8533471 ATAAATTTTGATTTGAATTTAAATAGTTA-TCCAAAAATATTTAATTTATATAATTTATTAAATA
131 ATAAAATTTGATTTGAATTTAAATAGTTACT-CAAAAATATCTAATTTATACAATTTATTAAATA
*
8533535 AAATTATTTGACAACAAATAAAAATTTATTAAGCTTATATATATTTGGAATTATAATTAAATTAA
195 AAATTATTTGACAACAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATTAA
*
8533600 AAAAAGATAATTTATAATTTAATATATTTGAATTTAAAATTTATATAAAAATTTTAATATTTTTT
260 AAAAAGATAATTTATAATTTAATATATTTGAATTTAAAATTTATATAAAAATTTTAATATTTTAT
* * *
8533665 AGATTATGATTTGACTTTAAATAA-T-T-ATTAAATTTATATCATTATTCAAACATATTAAATTT
325 AGATTATGATTTGAATTTAAATAATTATAATTAAATTTATATAATTATTCAAACATATCAAATTT
* *
8533727 AAATAATTTATTAAATAAAATTACTTAATAAATAAAATAATATAAATATTATTCTAT-TGTCATA
390 AAATAATTTATTAAATAAAATTACTTAATAAATAAAATAATATAAATATTATCCCATGTGTCATA
8533791 AAAAGAGACTATCCACATAACATCCATGTTAGCACATCTTATTCGATAGTTTTATATCTTGTAAT
455 AAAAGAGACTATCCACATAACATCCATGTTAGCACATCTTATTCGATAGTTTTATATCTTGTAAT
8533856 ATAATATA-TA
520 ATAATATATTA
* *
8533866 TATATATATATATATATATTAGA-ATAT-TATATATATATATATGTAATGCAATGATTAAATTTG
1 TATA-ATATA-ATATATATTAGATATATATATATATATATATATGTAAAGCAATGAATAAATTTG
*
8533929 AAAAGAAAAGATAAATTATGATTTAATATTTTTAAATTCAAAATTTATGTAAAATATTTAATTTT
64 AAAAGAAAAGATAAATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATATTTAATTTT
8533994 TGATAAAATTTGATTTGAATTTAAATAGTTACTCAAAAATATCTAATTTATACAATTTATTAAAT
129 TGATAAAATTTGATTTGAATTTAAATAGTTACTCAAAAATATCTAATTTATACAATTTATTAAAT
* * * *
8534059 AAAATTATTTGATAGCAAATAAAAGTTTATTAAGCCTATATATGTTTGGAATTATAATTAAATTA
194 AAAATTATTTGACAACAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATTA
* *
8534124 AAAAAAGATAATTTATAATTTAATATATTTGAATTTAAAATTTATGTAAAATTTTTAATATTTTA
259 AAAAAAGATAATTTATAATTTAATATATTTGAATTTAAAATTTATATAAAAATTTTAATATTTTA
*
8534189 TAGATTTTGATTTGAATTTAAATAATTATCCAAACAGATTAAATTTATATAATTATTCAAACATA
324 TAGATTATGATTTGAATTTAAATAATTAT------A-ATTAAATTTATATAATTATTCAAACATA
* * * *
8534254 TCAAATTTAAATAATTTATTAAATAGAGTTACTTAATAAATAATATACTATAAATATTATCCCAT
382 TCAAATTTAAATAATTTATTAAATAAAATTACTTAATAAATAAAATAATATAAATATTATCCCAT
8534319 GTGTCATAAA
447 GTGTCATAAA
8534329 GAGTTATTAT
Statistics
Matches: 1795, Mismatches: 146, Indels: 151
0.86 0.07 0.07
Matches are distributed among these distances:
504 12 0.01
505 113 0.06
506 1 0.00
508 2 0.00
509 13 0.01
510 27 0.02
511 86 0.05
512 5 0.00
513 1 0.00
514 1 0.00
515 75 0.04
516 23 0.01
517 16 0.01
518 224 0.12
519 160 0.09
520 159 0.09
521 155 0.09
522 143 0.08
523 22 0.01
524 3 0.00
525 304 0.17
526 15 0.01
527 15 0.01
529 1 0.00
530 112 0.06
531 13 0.01
535 85 0.05
536 9 0.01
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (530 bp):
TATAATATAATATATATTAGATATATATATATATATATATATGTAAAGCAATGAATAAATTTGAA
AAGAAAAGATAAATTATGATTTAATATATTTAAATTCAAAATTTATGTAAAATATTTAATTTTTG
ATAAAATTTGATTTGAATTTAAATAGTTACTCAAAAATATCTAATTTATACAATTTATTAAATAA
AATTATTTGACAACAAATAAAAATTTATTAAGCCTATATATATTTGGAATTATAATTAAATTAAA
AAAAGATAATTTATAATTTAATATATTTGAATTTAAAATTTATATAAAAATTTTAATATTTTATA
GATTATGATTTGAATTTAAATAATTATAATTAAATTTATATAATTATTCAAACATATCAAATTTA
AATAATTTATTAAATAAAATTACTTAATAAATAAAATAATATAAATATTATCCCATGTGTCATAA
AAAGAGACTATCCACATAACATCCATGTTAGCACATCTTATTCGATAGTTTTATATCTTGTAATA
TAATATATTA
Found at i:8534240 original size:27 final size:27
Alignment explanation
Indices: 8534203--8534269 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
8534193 TTTTGATTTG
*
8534203 AATTTAAATAATTATCCAAACAGATTA
1 AATTTAAATAATTATCCAAACAGATCA
* * *
8534230 AATTTATATAATTATTCAAACATATCA
1 AATTTAAATAATTATCCAAACAGATCA
8534257 AATTTAAATAATT
1 AATTTAAATAATT
8534270 TATTAAATAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.51, C:0.09, G:0.01, T:0.39
Consensus pattern (27 bp):
AATTTAAATAATTATCCAAACAGATCA
Found at i:8534719 original size:17 final size:17
Alignment explanation
Indices: 8534697--8534732 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
8534687 AGATTATGAT
8534697 TTAAATTTAAATAATTA
1 TTAAATTTAAATAATTA
*
8534714 TTAAATTTATATAATTA
1 TTAAATTTAAATAATTA
8534731 TT
1 TT
8534733 CAAACATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAATTTAAATAATTA
Found at i:8537999 original size:3 final size:3
Alignment explanation
Indices: 8537991--8538017 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8537981 AATTGGCTTG
8537991 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
8538018 ATGAATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8541485 original size:16 final size:16
Alignment explanation
Indices: 8541464--8541497 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
8541454 CAAATCTCCC
8541464 GAACCAAGCTTTAGGA
1 GAACCAAGCTTTAGGA
8541480 GAACCAAGCTTTAGGA
1 GAACCAAGCTTTAGGA
8541496 GA
1 GA
8541498 CTGTTTAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.18, G:0.26, T:0.18
Consensus pattern (16 bp):
GAACCAAGCTTTAGGA
Found at i:8541916 original size:164 final size:164
Alignment explanation
Indices: 8541645--8541970 Score: 616
Period size: 164 Copynumber: 2.0 Consensus size: 164
8541635 GTTGAAGCTG
* *
8541645 CCAATTGTAATTTGCAGCCAATGATAACAAAATCTTAATTGTATTCATCTTGGCAATTGGAGCAA
1 CCAATTGTAATTTGCAGCCAATGATAACAAAATCTTAACTGTATTCATCTTGGCAACTGGAGCAA
8541710 AGGTTTCCTGATAATCCACTCCATAGGTTTGAGTGTAGCCCTTAGCCACTAACTTGGCTTTATAC
66 AGGTTTCCTGATAATCCACTCCATAGGTTTGAGTGTAGCCCTTAGCCACTAACTTGGCTTTATAC
*
8541775 CTTTCAACAGTACCATTTGCCTTGTATTTTACTA
131 CTTTCAACAGTACCATTCGCCTTGTATTTTACTA
8541809 CCAATTGTAATTTGCAGCCAATGATAACAAAATCTTAACTGTATTCATCTTGGCAACTGGAGCAA
1 CCAATTGTAATTTGCAGCCAATGATAACAAAATCTTAACTGTATTCATCTTGGCAACTGGAGCAA
*
8541874 AGGTTTCTTGATAATCCACTCCATAGGTTTGAGTGTAGCCCTTAGCCACTAACTTGGCTTTATAC
66 AGGTTTCCTGATAATCCACTCCATAGGTTTGAGTGTAGCCCTTAGCCACTAACTTGGCTTTATAC
8541939 CTTTCAACAGTACCATTCGCCTTGTATTTTAC
131 CTTTCAACAGTACCATTCGCCTTGTATTTTAC
8541971 AGTGAATACC
Statistics
Matches: 158, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
164 158 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (164 bp):
CCAATTGTAATTTGCAGCCAATGATAACAAAATCTTAACTGTATTCATCTTGGCAACTGGAGCAA
AGGTTTCCTGATAATCCACTCCATAGGTTTGAGTGTAGCCCTTAGCCACTAACTTGGCTTTATAC
CTTTCAACAGTACCATTCGCCTTGTATTTTACTA
Found at i:8544541 original size:22 final size:22
Alignment explanation
Indices: 8544514--8544557 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8544504 ATATTTTGTC
*
8544514 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
* *
8544536 CTTAATTTTAGAGATATAAATA
1 CTTAATTCTAGAGATACAAATA
8544558 TAAATATACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:8548759 original size:95 final size:97
Alignment explanation
Indices: 8548605--8548784 Score: 278
Period size: 95 Copynumber: 1.9 Consensus size: 97
8548595 ATGGTAAAGC
8548605 CAAATATGGGACAATAAAAGGAATTGAACGTGAAGTGTATGAGGTAGAAACTCTCAAGTACAGTC
1 CAAATATGGGACAATAAAAGGAATTGAACGTGAAGTGTATGAGGTAGAAACTCTCAAGTACAGTC
*
8548670 TTAACTTAGGAAACTGACCTCTATGGAAAGGT
66 TTAACTTAAGAAACTGACCTCTATGGAAAGGT
* **
8548702 CAAATATGGGACAA-CAAA-GAATTGAGTGTGACA-TGTATGAGGTTA-AAACTCTCAAGTACAG
1 CAAATATGGGACAATAAAAGGAATTGAACGTGA-AGTGTATGAGG-TAGAAACTCTCAAGTACAG
8548763 TCTTAACTTAAGAAACTGACCT
64 TCTTAACTTAAGAAACTGACCT
8548785 TGCTTTTCAG
Statistics
Matches: 77, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
95 57 0.74
96 6 0.08
97 14 0.18
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.24
Consensus pattern (97 bp):
CAAATATGGGACAATAAAAGGAATTGAACGTGAAGTGTATGAGGTAGAAACTCTCAAGTACAGTC
TTAACTTAAGAAACTGACCTCTATGGAAAGGT
Found at i:8552587 original size:24 final size:24
Alignment explanation
Indices: 8552539--8552595 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
8552529 ATTTTATATT
*
8552539 AATTA-AAATTAAAGTTCATACAA
1 AATTATAAATTAAAGTTCATAAAA
*
8552562 AATTATAAATTAAATTATCA-AAAA
1 AATTATAAATTAAAGT-TCATAAAA
8552586 AATTACTAAA
1 AATTA-TAAA
8552596 ACAGAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 5 0.17
24 17 0.59
25 7 0.24
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.32
Consensus pattern (24 bp):
AATTATAAATTAAAGTTCATAAAA
Found at i:8556213 original size:15 final size:15
Alignment explanation
Indices: 8556195--8556229 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
8556185 AAAAAGGAAA
8556195 AAAATAA-AAAATAAT
1 AAAATAATAAAAT-AT
8556210 AAAATAATAAAATAT
1 AAAATAATAAAATAT
8556225 AAAAT
1 AAAAT
8556230 GGTGTTTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAATAATAAAATAT
Found at i:8556218 original size:18 final size:18
Alignment explanation
Indices: 8556192--8556226 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8556182 AACAAAAAGG
8556192 AAAAAAATAAAAAATAAT
1 AAAAAAATAAAAAATAAT
* *
8556210 AAAATAATAAAATATAA
1 AAAAAAATAAAAAATAA
8556227 AATGGTGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAAAATAAAAAATAAT
Found at i:8556468 original size:44 final size:43
Alignment explanation
Indices: 8556342--8556482 Score: 138
Period size: 44 Copynumber: 3.2 Consensus size: 43
8556332 AATCTTTTTT
* *
8556342 TTTAAAAGGGTTCCTCTAAACAGAGGTTCAATGACATTTTTGAAAA
1 TTTAAAA-GGTTCCTCTAAGCAGAGGCTCAATGAC--TTTTGAAAA
* * * * * ** *
8556388 TTTAAAAAGCTCCTATGAGCAGAGTCTCAACAACTTTTAAAAA
1 TTTAAAAGGTTCCTCTAAGCAGAGGCTCAATGACTTTTGAAAA
*
8556431 TTTAAATAGGTTCCTCTAAGTAGAGGCTCAATGACTTTTGAAAA
1 TTTAAA-AGGTTCCTCTAAGCAGAGGCTCAATGACTTTTGAAAA
8556475 TTTTAAAA
1 -TTTAAAA
8556483 AAGGCTCCTT
Statistics
Matches: 74, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
43 14 0.19
44 29 0.39
45 24 0.32
46 7 0.09
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (43 bp):
TTTAAAAGGTTCCTCTAAGCAGAGGCTCAATGACTTTTGAAAA
Found at i:8556517 original size:89 final size:88
Alignment explanation
Indices: 8556342--8556518 Score: 207
Period size: 89 Copynumber: 2.0 Consensus size: 88
8556332 AATCTTTTTT
* * *
8556342 TTTAAAAGGGTTCCTCTAAACAGAGGTTCAATGACATTTTTGAAAATTTAAAAAGCTCCTATGAG
1 TTTAAAAGGGTTCCTCTAAACAGAGGCTCAATGACA-TTTTGAAAATTTAAAAAGCTCCTATAAA
* *
8556407 CAGAGTCTCAACAACTTTTAAAAA
65 CAGAGACTCAACAACTGTTAAAAA
** *
8556431 TTTAAATA-GGTTCCTCTAAGTAGAGGCTCAATGAC-TTTTGAAAATTTTAAAAAAGGCTCCTTT
1 TTTAAA-AGGGTTCCTCTAAACAGAGGCTCAATGACATTTTGAAAA-TTT-AAAAA-GCTCCTAT
*
8556494 AAACAGAGACTTAACAA-TGTTAAAA
62 AAACAGAGACTCAACAACTGTTAAAA
8556519 TTCATCATCT
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
87 9 0.12
88 3 0.04
89 42 0.56
90 21 0.28
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (88 bp):
TTTAAAAGGGTTCCTCTAAACAGAGGCTCAATGACATTTTGAAAATTTAAAAAGCTCCTATAAAC
AGAGACTCAACAACTGTTAAAAA
Found at i:8556697 original size:49 final size:49
Alignment explanation
Indices: 8556531--8557345 Score: 672
Period size: 49 Copynumber: 16.8 Consensus size: 49
8556521 CATCATCTTG
*
8556531 AAAAAGC-TCTTCTAAGCAGAGGCTCAACAA-TTTAAAAATCTCATCTG-
1 AAAAAGCTTC-TCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCTGA
* * * *
8556578 AAAAAGCTCCTCTAAGCA-AAGCTCAACAATTTTAAAAATCTCATCTG-
1 AAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCTGA
* *
8556625 AAAAAGC-TCTTTTAAGCAGAGGCTCAACAACTTTAAAAATCTTATATGA
1 AAAAAGCTTC-TCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCTGA
* * ** *
8556674 AAAAAGCTTCTCTAAGCAAAGGCTTAACATTTTTAAAAATCTTATATGA
1 AAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCTGA
** * * *
8556723 AAAAAATTTCTCTAAGCAGAGACTTAACAATTTTAAAAAATCTTATCTGA
1 AAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTT-AAAAATCTTATCTGA
* * * * *
8556773 AAAAGGCTTCTCTAAGCAGAAGCTCAACAACTTTAAAATTCATCATTTTG-
1 AAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATC-TTA-TCTGA
* * * * * * *
8556823 AAAAAGCTTATATAAGTAAAAGCTCAATAACTTTAAAAATCTTATCTGG
1 AAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCTGA
* * * * *
8556872 AAAAGGC-TCATTTAAGTAAAGGCTCAATAACTTTAAAAAAAT-TTATCTGA
1 AAAAAGCTTC-TCTAAGCAGAGGCTCAACAACTTT--AAAAATCTTATCTGA
* * * *
8556922 AAAAAG-TTCATCTAAACAGATGCTCAACAACTTTAAAAATTTTATCTAA
1 AAAAAGCTTC-TCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCTGA
* * * * *
8556971 AAAAAGTTTCTCTAAGCAAAGGTTCAAC-ACTTTAAAATTCATCATCCT-A
1 AAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATC-TTAT-CTGA
* * *
8557020 GAAAAGCTTCTCTAAGCAAAGGTTCAACAACTTTAAAAATCTTATCTGA
1 AAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCTGA
* * * *
8557069 AAAAAGC-TCTCTAAGTAGAGGCTTAACAACTTTAAAAA---AAT-TAA
1 AAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCTGA
* * *
8557113 AAAAAAC-TCTTCTAAGTAGAGGCTCAATAACTTT-AAAATCTTATCTTG-
1 AAAAAGCTTC-TCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATC-TGA
* * ** * * * *
8557161 AAAAAGC-TCATATAAGCAGAGCCTTGACAACTTTAAAACTCTAATATTA
1 AAAAAGCTTC-TCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCTGA
* * * * *
8557210 GAAAAGCTCCTCTAAGTAGAGGCTCGACAACTTTAAAAAT-TCATCTTG-
1 AAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATC-TGA
* * * *
8557258 AAAAAGTTTCTCTAAGCAGAAGG-TCAATAACTTTAAAAATC-CATCTTA
1 AAAAAGCTTCTCTAAGCAG-AGGCTCAACAACTTTAAAAATCTTATCTGA
*
8557306 AAAAAGCTTATCTAAGCAGAGGCTCAACAACTTTAAAAAT
1 AAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAAT
8557346 TCATCTGTTC
Statistics
Matches: 628, Mismatches: 106, Indels: 67
0.78 0.13 0.08
Matches are distributed among these distances:
44 14 0.02
45 24 0.04
46 11 0.02
47 52 0.08
48 172 0.27
49 217 0.35
50 129 0.21
51 9 0.01
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (49 bp):
AAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCTGA
Found at i:8556808 original size:99 final size:96
Alignment explanation
Indices: 8556513--8557345 Score: 673
Period size: 99 Copynumber: 8.6 Consensus size: 96
8556503 CTTAACAATG
* *
8556513 TTAAAATTCATCATCTTG-AAAAAGC-TCTTCTAAGCAGAGGCTCAACAA-TTTAAAAATCTCAT
1 TTAAAAATC-TCATC-TGAAAAAAGCTTC-TCTAAGCAGAGGCTCAACAACTTTAAAAATCTTAT
* *
8556575 CTGAAAAAGCTCCTCTAAGCAAAGCTCAACAATT
63 CTGAAAAAGCTTCTCTAAGCAAAGCTCAACAACT
* *
8556609 TTAAAAATCTCATCTG-AAAAAGC-TCTTTTAAGCAGAGGCTCAACAACTTTAAAAATCTTATAT
1 TTAAAAATCTCATCTGAAAAAAGCTTC-TCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCT
* **
8556672 GAAAAAAGCTTCTCTAAGCAAAGGCTTAACATTT
65 G-AAAAAGCTTCTCTAAGCAAA-GCTCAACAACT
* * ** * * *
8556706 TTAAAAATCTTATATGAAAAAAATTTCTCTAAGCAGAGACTTAACAATTTTAAAAAATCTTATCT
1 TTAAAAATCTCATCTGAAAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTT-AAAAATCTTATCT
8556771 GAAAAAGGCTTCTCTAAGCAGAAGCTCAACAACT
65 GAAAAA-GCTTCTCTAAGCA-AAGCTCAACAACT
* * * * * * * *
8556805 TTAAAATTCATCATTTTG-AAAAAGCTTATATAAGTAAAAGCTCAATAACTTTAAAAATCTTATC
1 TTAAAAATC-TCA-TCTGAAAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATC
* * * *
8556869 TGGAAAAGGC-TCATTTAAGTAAAGGCTCAATAACT
64 T-GAAAAAGCTTC-TCTAAGCAAA-GCTCAACAACT
* * * *
8556904 TTAAAAAAAT-TTATCTGAAAAAAG-TTCATCTAAACAGATGCTCAACAACTTTAAAAATTTTAT
1 TT--AAAAATCTCATCTGAAAAAAGCTTC-TCTAAGCAGAGGCTCAACAACTTTAAAAATCTTAT
* * *
8556967 CTAAAAAAAGTTTCTCTAAGCAAAGGTTCAAC-ACT
63 CT-GAAAAAGCTTCTCTAAGCAAA-GCTCAACAACT
* * * *
8557002 TTAAAATTCATCATCCT-AGAAAAGCTTCTCTAAGCAAAGGTTCAACAACTTTAAAAATCTTATC
1 TTAAAAATC-TCAT-CTGAAAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATC
* * *
8557066 TGAAAAAAGC-TCTCTAAGTAGAGGCTTAACAACT
64 TG-AAAAAGCTTCTCTAAGCA-AAGCTCAACAACT
* * * * *
8557100 TTAAAAA---AAT-TAAAAAAAAC-TCTTCTAAGTAGAGGCTCAATAACTTT-AAAATCTTATCT
1 TTAAAAATCTCATCTGAAAAAAGCTTC-TCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATC-
* * **
8557159 TGAAAAAGC-TCATATAAGCAGAGCCTTGACAACT
64 TGAAAAAGCTTC-TCTAAGCAAAG-CTCAACAACT
* * * * * * * * *
8557193 TTAAAACTCTAATATTAGAAAAGCTCCTCTAAGTAGAGGCTCGACAACTTTAAAAAT-TCATCTT
1 TTAAAAATCTCATCTGAAAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATC-T
* * *
8557257 GAAAAAGTTTCTCTAAGCAGAAGGTCAATAACT
65 GAAAAAGCTTCTCTAAGCA-AAGCTCAACAACT
* *
8557290 TTAAAAATC-CATCTTAAAAAAGCTTATCTAAGCAGAGGCTCAACAACTTTAAAAAT
1 TTAAAAATCTCATCTGAAAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAAT
8557346 TCATCTGTTC
Statistics
Matches: 593, Mismatches: 106, Indels: 76
0.77 0.14 0.10
Matches are distributed among these distances:
92 24 0.04
93 49 0.08
94 33 0.06
95 20 0.03
96 75 0.13
97 100 0.17
98 111 0.19
99 139 0.23
100 34 0.06
101 8 0.01
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (96 bp):
TTAAAAATCTCATCTGAAAAAAGCTTCTCTAAGCAGAGGCTCAACAACTTTAAAAATCTTATCTG
AAAAAGCTTCTCTAAGCAAAGCTCAACAACT
Found at i:8558232 original size:7 final size:7
Alignment explanation
Indices: 8558176--8558232 Score: 53
Period size: 7 Copynumber: 7.9 Consensus size: 7
8558166 TACGTCATTC
8558176 TTTTTTCA
1 TTTTTT-A
*
8558184 TTTTTCA
1 TTTTTTA
*
8558191 TTTTTTG
1 TTTTTTA
*
8558198 TTTTTATT
1 TTTTT-TA
8558206 TTTTTTA
1 TTTTTTA
8558213 TCTTTTTA
1 T-TTTTTA
8558221 -TTTTTA
1 TTTTTTA
8558227 TTTTTT
1 TTTTTT
8558233 TAAGCAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
6 6 0.15
7 18 0.44
8 17 0.41
ACGTcount: A:0.11, C:0.05, G:0.02, T:0.82
Consensus pattern (7 bp):
TTTTTTA
Found at i:8560058 original size:22 final size:21
Alignment explanation
Indices: 8560033--8560102 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 21
8560023 AATTTAGACA
8560033 AAATCAGTAGTAACTTTATATT
1 AAATCA-TAGTAACTTTATATT
* * *
8560055 AAATCAATAATAACTGTGTATT
1 AAATC-ATAGTAACTTTATATT
* * *
8560077 AAATTATAGATAACTTAATAGT
1 AAATCATAG-TAACTTTATATT
8560099 AAAT
1 AAAT
8560103 TAATAATGAC
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
21 3 0.08
22 33 0.89
23 1 0.03
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (21 bp):
AAATCATAGTAACTTTATATT
Found at i:8560103 original size:22 final size:22
Alignment explanation
Indices: 8560076--8560122 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
8560066 AACTGTGTAT
*
8560076 TAAATT-ATAGATAACTTAATAG
1 TAAATTAATA-ATAACATAATAG
*
8560098 TAAATTAATAATGACATAATAG
1 TAAATTAATAATAACATAATAG
8560120 TAA
1 TAA
8560123 GTAACTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.34
Consensus pattern (22 bp):
TAAATTAATAATAACATAATAG
Found at i:8560197 original size:22 final size:22
Alignment explanation
Indices: 8560172--8560213 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8560162 TGTATGCCAG
8560172 TAATAACATAATAATAAATATA
1 TAATAACATAATAATAAATATA
* * *
8560194 TAATAATATAGTAGTAAATA
1 TAATAACATAATAATAAATA
8560214 ACAAATAAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (22 bp):
TAATAACATAATAATAAATATA
Found at i:8560320 original size:22 final size:21
Alignment explanation
Indices: 8560285--8560366 Score: 85
Period size: 22 Copynumber: 3.8 Consensus size: 21
8560275 AATTAAGAAC
*
8560285 AATTTAACAA-AAATAAGTGAT
1 AATTTAATAATAAATAA-TGAT
*
8560306 AACTTAATAATAAATCAATGAT
1 AATTTAATAATAAAT-AATGAT
* *
8560328 AATTTAGTAATAAATTAATAAT
1 AATTTAATAATAAA-TAATGAT
*
8560350 AATTTAATAGTAAATAA
1 AATTTAATAATAAATAA
8560367 GATTCGGTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
21 11 0.22
22 37 0.73
23 3 0.06
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (21 bp):
AATTTAATAATAAATAATGAT
Found at i:8560340 original size:11 final size:11
Alignment explanation
Indices: 8560304--8560358 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
8560294 AAAATAAGTG
*
8560304 ATAACTTAATA
1 ATAATTTAATA
* * *
8560315 ATAAATCAATG
1 ATAATTTAATA
*
8560326 ATAATTTAGTA
1 ATAATTTAATA
*
8560337 ATAAATTAATA
1 ATAATTTAATA
8560348 ATAATTTAATA
1 ATAATTTAATA
8560359 GTAAATAAGA
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (11 bp):
ATAATTTAATA
Found at i:8560729 original size:66 final size:66
Alignment explanation
Indices: 8560652--8560805 Score: 172
Period size: 66 Copynumber: 2.3 Consensus size: 66
8560642 AAATTTAGCA
* * * *
8560652 ATAAATCATCAATAACTTTA-TAGCAAATTAG-TAATTACTTTATAATAAATTATCTATAACTTA
1 ATAAATTATCAATAA-TTTAGTAGCAAATT-GTTAATAACTTAATAATAAATCATCTATAACTTA
8560715 AT-
64 ATG
* * *
8560717 AGTAAATTATCAATAATTTAGTCGCAAATTGTTTATAACTTAATAGTAAATCATCTATAACTTAA
1 A-TAAATTATCAATAATTTAGTAGCAAATTGTTAATAACTTAATAATAAATCATCTATAACTTAA
8560782 TG
65 TG
*
8560784 ATAAATTGAT-GATAATTTAGTA
1 ATAAATT-ATCAATAATTTAGTA
8560806 ATAAATCAGT
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
65 6 0.08
66 66 0.88
67 3 0.04
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (66 bp):
ATAAATTATCAATAATTTAGTAGCAAATTGTTAATAACTTAATAATAAATCATCTATAACTTAAT
G
Found at i:8560767 original size:22 final size:22
Alignment explanation
Indices: 8560653--8560790 Score: 100
Period size: 22 Copynumber: 6.3 Consensus size: 22
8560643 AATTTAGCAA
* * *
8560653 TAAATCATCAATAACTTTATAG
1 TAAATTATCTATAACTTAATAG
* * * * *
8560675 CAAATTAGT-AATTACTTTATAA
1 TAAATTA-TCTATAACTTAATAG
8560697 TAAATTATCTATAACTTAATAG
1 TAAATTATCTATAACTTAATAG
* * * *
8560719 TAAATTATCAATAATTTAGTCG
1 TAAATTATCTATAACTTAATAG
* * *
8560741 CAAATTGTTTATAACTTAATAG
1 TAAATTATCTATAACTTAATAG
*
8560763 TAAATCATCTATAACTTAAT-G
1 TAAATTATCTATAACTTAATAG
8560784 ATAAATT
1 -TAAATT
8560791 GATGATAATT
Statistics
Matches: 88, Mismatches: 25, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
21 2 0.02
22 85 0.97
23 1 0.01
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (22 bp):
TAAATTATCTATAACTTAATAG
Found at i:8560790 original size:44 final size:45
Alignment explanation
Indices: 8560696--8560791 Score: 115
Period size: 44 Copynumber: 2.2 Consensus size: 45
8560686 TTACTTTATA
* * * *
8560696 ATAAATTATCTATAACTTAATAGTAAATTATCAATAATTTAGTCG
1 ATAAATTGTCTATAACTTAATAGTAAATCATCAATAACTTAATCG
* * *
8560741 -CAAATTGTTTATAACTTAATAGTAAATCATCTATAACTTAAT-G
1 ATAAATTGTCTATAACTTAATAGTAAATCATCAATAACTTAATCG
8560784 ATAAATTG
1 ATAAATTG
8560792 ATGATAATTT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
43 1 0.02
44 41 0.98
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (45 bp):
ATAAATTGTCTATAACTTAATAGTAAATCATCAATAACTTAATCG
Found at i:8561115 original size:23 final size:22
Alignment explanation
Indices: 8561088--8561141 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
8561078 GTAAATCATA
*
8561088 AATAACTTACTAATAATTCAACT
1 AATAACTTACTAATAAAT-AACT
* * *
8561111 AATAACTTAGTAGTAAATAATT
1 AATAACTTACTAATAAATAACT
8561133 AATAACTTA
1 AATAACTTA
8561142 ATAGCTAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.50, C:0.11, G:0.04, T:0.35
Consensus pattern (22 bp):
AATAACTTACTAATAAATAACT
Found at i:8561156 original size:22 final size:22
Alignment explanation
Indices: 8561067--8561145 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
8561057 TAATTGATTG
* * *
8561067 ATAAATTAATAGTAAATCATAA
1 ATAACTTAATAGTAAATAATTA
* * * *
8561089 ATAACTTACTAATAATTCAACTA
1 ATAACTTAATAGTAAAT-AATTA
*
8561112 ATAACTTAGTAGTAAATAATTA
1 ATAACTTAATAGTAAATAATTA
8561134 ATAACTTAATAG
1 ATAACTTAATAG
8561146 CTAATTATTA
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
22 28 0.64
23 16 0.36
ACGTcount: A:0.52, C:0.09, G:0.05, T:0.34
Consensus pattern (22 bp):
ATAACTTAATAGTAAATAATTA
Found at i:8561324 original size:22 final size:22
Alignment explanation
Indices: 8561299--8561446 Score: 97
Period size: 22 Copynumber: 6.8 Consensus size: 22
8561289 AGTAGTAAAT
* *
8561299 TAGTTAATCATTGATAATTTTA
1 TAGTAAATCATTGATAATTTCA
*
8561321 TAGTAAATTATTGATAATTTCA
1 TAGTAAATCATTGATAATTTCA
* *
8561343 TAGAAAATTAGTT-ATAACTTT-A
1 TAGTAAATCA-TTGATAA-TTTCA
* * * *
8561365 TAATAAATTA-TCATAACTT-A
1 TAGTAAATCATTGATAATTTCA
* * * *
8561385 GTAGTAAATTATTCATAACTTAA
1 -TAGTAAATCATTGATAATTTCA
* *
8561408 TAGTAAATCATTAATAATTTAA
1 TAGTAAATCATTGATAATTTCA
*
8561430 TAATAAATCATTGATAA
1 TAGTAAATCATTGATAA
8561447 CACAGTAATA
Statistics
Matches: 107, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
20 4 0.04
21 13 0.12
22 84 0.79
23 6 0.06
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.42
Consensus pattern (22 bp):
TAGTAAATCATTGATAATTTCA
Found at i:8561415 original size:43 final size:44
Alignment explanation
Indices: 8561320--8561424 Score: 108
Period size: 43 Copynumber: 2.4 Consensus size: 44
8561310 TGATAATTTT
* * *
8561320 ATAGTAAATTATTGATAATTTCATAGAAAATTAGTTATAACTTT
1 ATAGTAAATTATTCATAACTTCATAGAAAATTAGTTATAACTTA
* *
8561364 ATAATAAATTA-TCATAACTT-AGTAGTAAATTA-TTCATAACTTA
1 ATAGTAAATTATTCATAACTTCA-TAGAAAATTAGTT-ATAACTTA
* *
8561407 ATAGTAAATCATTAATAA
1 ATAGTAAATTATTCATAA
8561425 TTTAATAATA
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
42 3 0.06
43 32 0.64
44 15 0.30
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (44 bp):
ATAGTAAATTATTCATAACTTCATAGAAAATTAGTTATAACTTA
Found at i:8567860 original size:10 final size:10
Alignment explanation
Indices: 8567845--8567869 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8567835 TCTTGTTAAC
8567845 AAACTCTATT
1 AAACTCTATT
8567855 AAACTCTATT
1 AAACTCTATT
8567865 AAACT
1 AAACT
8567870 ACTACGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.36
Consensus pattern (10 bp):
AAACTCTATT
Found at i:8574116 original size:6 final size:7
Alignment explanation
Indices: 8574087--8574115 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
8574077 AGCAACATCA
8574087 AAAGCCC
1 AAAGCCC
8574094 AAAGCCC
1 AAAGCCC
8574101 AAAGCCC
1 AAAGCCC
8574108 -AAGCCC
1 AAAGCCC
8574114 AA
1 AA
8574116 GGCGGAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.45, C:0.41, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAGCCC
Found at i:8574263 original size:2 final size:2
Alignment explanation
Indices: 8574256--8574294 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8574246 TCTTTCCTTG
8574256 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
8574295 AGGTTCGCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:8579083 original size:19 final size:19
Alignment explanation
Indices: 8579061--8579098 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8579051 ATTGCACCAT
*
8579061 ATTATTATTATACAATAGA
1 ATTATTATTATAAAATAGA
8579080 ATTATTATTATAAAATAGA
1 ATTATTATTATAAAATAGA
8579099 GCAGCGTCGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (19 bp):
ATTATTATTATAAAATAGA
Found at i:8579152 original size:2 final size:2
Alignment explanation
Indices: 8579145--8579210 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
8579135 ATGTAAACGT
8579145 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
8579187 CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA
8579211 TATATGTGTG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:8587280 original size:42 final size:42
Alignment explanation
Indices: 8587233--8587502 Score: 411
Period size: 42 Copynumber: 6.5 Consensus size: 42
8587223 AAAGTTCCAT
*
8587233 TGCCTCTGTTTAAAGGAGCAATTTACTTTCTCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGG
* *
8587275 GGCCTCTATTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGG
* *
8587317 TGCCTCTGTTTAGAGGAACAATTTACTTTC-CAAAAGTTGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCTC-AAAGTCGTGG
8587359 TGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCTC-AAAGTCGTGG
* *
8587402 TACCTCTGTTTAGATGAGCAATTTACTTT-TCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGG
**
8587443 TGCCTCTGTTTAGAGGAGCAATTTACTTTC-CAAAGTCGTTA
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGG
*
8587484 AGCCTCTGTTTAGAGGAGC
1 TGCCTCTGTTTAGAGGAGC
8587503 TTTGAAAAAA
Statistics
Matches: 209, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
41 65 0.31
42 106 0.51
43 38 0.18
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (42 bp):
TGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGG
Found at i:8587527 original size:7 final size:7
Alignment explanation
Indices: 8587507--8587554 Score: 62
Period size: 7 Copynumber: 6.9 Consensus size: 7
8587497 AGGAGCTTTG
*
8587507 AAAAAAA
1 AAAAAAT
8587514 AACAAAAT
1 AA-AAAAT
8587522 AAAAAAT
1 AAAAAAT
8587529 AAAAAAT
1 AAAAAAT
*
8587536 AAAACA-
1 AAAAAAT
8587542 AAAAAAT
1 AAAAAAT
8587549 AAAAAA
1 AAAAAA
8587555 CATGCCTCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
6 5 0.14
7 25 0.69
8 6 0.17
ACGTcount: A:0.88, C:0.04, G:0.00, T:0.08
Consensus pattern (7 bp):
AAAAAAT
Found at i:8587527 original size:13 final size:12
Alignment explanation
Indices: 8587509--8587554 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 12
8587499 GAGCTTTGAA
8587509 AAAAAAACAAAAT
1 AAAAAAA-AAAAT
8587522 AAAAAATAAAAAAT
1 -AAAAA-AAAAAAT
8587536 AAAACAAAAAAAT
1 AAAA-AAAAAAAT
8587549 AAAAAA
1 AAAAAA
8587555 CATGCCTCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 2 0.07
13 15 0.50
14 11 0.37
15 2 0.07
ACGTcount: A:0.87, C:0.04, G:0.00, T:0.09
Consensus pattern (12 bp):
AAAAAAAAAAAT
Found at i:8591006 original size:116 final size:116
Alignment explanation
Indices: 8590730--8591233 Score: 635
Period size: 116 Copynumber: 4.3 Consensus size: 116
8590720 TAATTTCAAG
* * * *
8590730 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAGCTTTCCAAAA
1 AAAAAAAAGA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG-TTTCCAAAA
*
8590794 AATATTTTT-AGGAAAAAGTTG-AAGTATCAATTTTTTCCTTAAAAAATAAATTTTC
64 AATATTTTTGA-AAAAAAGTTGAAAGTATCAA--TTTTCCTT-AAAAATAAATTTTC
* *
8590849 AAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAGGTTTCCAAAAAA
1 AAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCCAAAAAA
* *
8590914 TGTTTTTGAAAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
66 TATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
8590965 AAAAAAAAGATTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTCGAAATTAAAGTTTTCAAAAAA
1 AAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCCAAAAAA
* * *
8591030 TATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAGATAAATTTTC
66 TATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
** * * **
8591081 ---AAAGGGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTAAAAAAA
1 AAAAAAAAGA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCCAAAAA
** * * *
8591143 ATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTCGAGATTAAAATTTC
65 ATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * * *
8591195 -TAAAAAATATTTTGGGGAGAAGTTGAAAGTATCAATTTT
1 AAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTT
8591234 TCCTGCACAA
Statistics
Matches: 340, Mismatches: 39, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
113 5 0.01
114 93 0.27
115 27 0.08
116 125 0.37
117 7 0.02
118 63 0.19
119 20 0.06
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.36
Consensus pattern (116 bp):
AAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCCAAAAAA
TATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:8591118 original size:27 final size:26
Alignment explanation
Indices: 8591087--8591176 Score: 65
Period size: 27 Copynumber: 3.2 Consensus size: 26
8591077 TTTCAAAGGG
8591087 ATTTTTGAGAAAAAGTTGAAAGTATCA
1 ATTTTTGA-AAAAAGTTGAAAGTATCA
* * **
8591114 ATTTTCCTTGAAATTAAAGTTTAAA-AAAAA
1 A-TTT--TTGAAA--AAAGTTGAAAGTATCA
8591144 TATTTTTGAAAAAAAGTTGAAAGTATCA
1 -ATTTTTG-AAAAAAGTTGAAAGTATCA
8591172 ATTTT
1 ATTTT
8591177 CCTCGAGATT
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 15 0.32
28 8 0.17
29 5 0.11
30 9 0.19
31 10 0.21
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.38
Consensus pattern (26 bp):
ATTTTTGAAAAAAGTTGAAAGTATCA
Found at i:8591133 original size:31 final size:31
Alignment explanation
Indices: 8591098--8591189 Score: 86
Period size: 31 Copynumber: 3.1 Consensus size: 31
8591088 TTTTTGAGAA
8591098 AAAGTTGAAAGTATCAATTTTCCTTGAAATT
1 AAAGTTGAAAGTATCAATTTTCCTTGAAATT
* ** *
8591129 AAAGTTTAAA--AAAAATATTT--TTGAAA-A
1 AAAGTTGAAAGTATCAAT-TTTCCTTGAAATT
* *
8591156 AAAGTTGAAAGTATCAATTTTCCTCGAGATT
1 AAAGTTGAAAGTATCAATTTTCCTTGAAATT
8591187 AAA
1 AAA
8591190 ATTTCTAAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
27 9 0.20
28 9 0.20
29 8 0.18
30 7 0.16
31 12 0.27
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (31 bp):
AAAGTTGAAAGTATCAATTTTCCTTGAAATT
Found at i:8591237 original size:58 final size:57
Alignment explanation
Indices: 8590732--8591233 Score: 514
Period size: 58 Copynumber: 8.7 Consensus size: 57
8590722 ATTTCAAGAA
* * *
8590732 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAGCTTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG-TTT-C
** * *
8590790 AAAAAATATTTTT-AGGAAAAAGTTG-AAGTATCAATTTTTTCCTTAAAAAATAAATTTTC
1 AAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAA--TTTTCC-TCGAAATTAAAGTTTC
* *
8590849 AAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAGGTTTCC
1 AAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTT-C
* ** * ** * *
8590908 AAAAAATGTTTTTGAAAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
* * *
8590965 AAAAAAAAGATTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTCGAAATTAAAGTTTTC
1 AAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG-TTTC
* * *
8591024 AAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTCCT-TAAAGATAAATTTTC
1 AAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTCGAAA-TTAAAGTTTC
*** * * *
8591081 -AAAGGGATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTAA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTT-C
** * *
8591138 AAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTCGAGATTAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
* *
8591195 TAAAAAATA-TTTTGGGGAGAAGTTGAAAGTATCAATTTT
1 -AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
8591234 TCCTGCACAA
Statistics
Matches: 369, Mismatches: 57, Indels: 37
0.80 0.12 0.08
Matches are distributed among these distances:
56 42 0.11
57 57 0.15
58 197 0.53
59 37 0.10
60 22 0.06
61 14 0.04
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.36
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
Found at i:8594596 original size:18 final size:18
Alignment explanation
Indices: 8594575--8594618 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8594565 AAAAGATGAT
*
8594575 GAAAAAAAATTAAAAAAA
1 GAAAAAAAATGAAAAAAA
* *
8594593 GAAAAAAAATGAGAAAAT
1 GAAAAAAAATGAAAAAAA
8594611 GAAAAAAA
1 GAAAAAAA
8594619 GATATTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (18 bp):
GAAAAAAAATGAAAAAAA
Found at i:8595930 original size:42 final size:41
Alignment explanation
Indices: 8595896--8595981 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 41
8595886 GTGAGCCTTT
8595896 AAACTCAAATGAAAAGCTTT-GAATTTTTGGATGTGAATTTCC
1 AAACTCAAATGAAAAGCTTTAG-ATTTTTGGATGTGAATTT-C
* *
8595938 AAAATTCAAATGAAAAGCTTTAGATTTTTGGATATGAATTTC
1 -AAACTCAAATGAAAAGCTTTAGATTTTTGGATGTGAATTTC
8595980 AA
1 AA
8595982 GTTTGCCAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
41 2 0.05
42 1 0.03
43 36 0.90
44 1 0.03
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (41 bp):
AAACTCAAATGAAAAGCTTTAGATTTTTGGATGTGAATTTC
Found at i:8596329 original size:41 final size:41
Alignment explanation
Indices: 8596299--8596607 Score: 458
Period size: 41 Copynumber: 7.5 Consensus size: 41
8596289 AAAGTTCTAT
*
8596299 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGCGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCC-AAAGTCGTGG
* *
8596341 TGCCTCTGTTCAGAGGAGCAATTTACTTTCTCAAAGTCATGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTC-CAAAGTCGTGG
* *
8596383 TGCCTCTGTTTAGATGAGCAATTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
* *
8596424 TGCCTTTATTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCC-AAAGTCGTGG
8596466 TGCCTC-GTTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTC-CAAAGTCGTGG
* *
8596507 TGCCTTTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
* *
8596548 TGCCTCTGTTTGGAGGAGCAATTTACTTTCCAAAGTCGTTG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
* *
8596589 AGCCTTTGTTTAGAGGAGC
1 TGCCTCTGTTTAGAGGAGC
8596608 TTTGAAAAAA
Statistics
Matches: 241, Mismatches: 22, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
41 138 0.57
42 102 0.42
43 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (41 bp):
TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
Found at i:8596440 original size:83 final size:83
Alignment explanation
Indices: 8596299--8596607 Score: 480
Period size: 83 Copynumber: 3.7 Consensus size: 83
8596289 AAAGTTCTAT
* * *
8596299 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGCGGTGCCTCTGTTCAGAGGAGCAATT
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATT
*
8596364 TACTTTCTCAAAGTCATGG
65 TACTTTCTCAAAGTCGTGG
* * *
8596383 TGCCTCTGTTTAGATGAGCAATTTACTTTTCAAAGTCGTGGTGCCTTTATTTAGAGGAGCAATTT
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTT
8596448 ACTTTC-CAAAAGTCGTGG
66 ACTTTCTC-AAAGTCGTGG
8596466 TGCCTC-GTTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATT
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTC-CAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATT
8596530 TACTTT-TCAAAGTCGTGG
65 TACTTTCTCAAAGTCGTGG
* * *
8596548 TGCCTCTGTTTGGAGGAGCAATTTACTTTCCAAAGTCGTTGAGCCTTTGTTTAGAGGAGC
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTTTGTTTAGAGGAGC
8596608 TTTGAAAAAA
Statistics
Matches: 208, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
82 66 0.32
83 113 0.54
84 29 0.14
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (83 bp):
TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTT
ACTTTCTCAAAGTCGTGG
Found at i:8596532 original size:124 final size:124
Alignment explanation
Indices: 8596299--8596607 Score: 485
Period size: 124 Copynumber: 2.5 Consensus size: 124
8596289 AAAGTTCTAT
* * *
8596299 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGCGGTGCCTCTGTTCAGAGGAGCAATT
1 TGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTC-GTTTAGAGGAGCAATT
*
8596364 TACTTTCTCAAAGTCATGGTGCCTCTGTTTAGATGAGCAATTTACTTTTCAAAGTCGTGG
65 TACTTTCTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGG
*
8596424 TGCCTTTATTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCGTTTAGAGGAGCAATTT
1 TGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCGTTTAGAGGAGCAATTT
* *
8596489 ACTTTCTCAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGG
66 ACTTTCTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGG
* * * * *
8596548 TGCCTCTGTTTGGAGGAGCAATTTACTTTCC-AAAGTCGTTGAGCCTTTGTTTAGAGGAGC
1 TGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCC-TCGTTTAGAGGAGC
8596608 TTTGAAAAAA
Statistics
Matches: 170, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
123 12 0.07
124 113 0.66
125 45 0.26
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (124 bp):
TGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCGTTTAGAGGAGCAATTT
ACTTTCTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGG
Found at i:8596632 original size:13 final size:13
Alignment explanation
Indices: 8596614--8596650 Score: 67
Period size: 12 Copynumber: 2.9 Consensus size: 13
8596604 GAGCTTTGAA
8596614 AAAAAAACAAAAC
1 AAAAAAACAAAAC
8596627 -AAAAAACAAAAC
1 AAAAAAACAAAAC
8596639 AAAAAAACAAAA
1 AAAAAAACAAAA
8596651 AAATTACCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAACAAAAC
Found at i:8596812 original size:107 final size:111
Alignment explanation
Indices: 8596574--8596853 Score: 342
Period size: 107 Copynumber: 2.5 Consensus size: 111
8596564 AGCAATTTAC
* * ***
8596574 TTTC-CAAAGTCGTTGAGCCTTTGTTTAGAGGAGCTTTGA--AAAAAAAACAAAACAAAAAACAA
1 TTTCTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCTTTGATCAATTTAAA-AAAACAAAAAACAA
* *
8596636 AACAAAAAAACAAAAAAATTACCTATGTTTAAGGGAGCTTTGTTTATG
65 AACAAAAAAACAAAAAAATTACCTATATTTAA-GGAACTTTGTTTATG
8596684 TTTCTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCTTTGATCAATTTAAAAAAA-AAAAAACAAG
1 TTTCTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCTTTGATCAATTTAAAAAAACAAAAAACAA-
* * *
8596748 AA-AACAAAA-AAAAAAGTTACCTCTATTT-A-GAACTTTGTTTATG
65 AACAAAAAAACAAAAAAATTACCTATATTTAAGGAACTTTGTTTATG
* * *
8596791 TTTCTCAAAGTCATTGAGCCTCAGCTTAGAGGAGCTTTGATCAAAATTTAAAAAAATAAAAAA
1 TTTCTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCTTTGATC--AATTTAAAAAAACAAAAAA
8596854 AATGGGCAAA
Statistics
Matches: 151, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
107 53 0.35
109 13 0.09
110 26 0.17
111 48 0.32
112 6 0.04
113 5 0.03
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.28
Consensus pattern (111 bp):
TTTCTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGCTTTGATCAATTTAAAAAAACAAAAAACAAA
ACAAAAAAACAAAAAAATTACCTATATTTAAGGAACTTTGTTTATG
Found at i:8597017 original size:6 final size:6
Alignment explanation
Indices: 8597006--8597081 Score: 57
Period size: 6 Copynumber: 11.8 Consensus size: 6
8596996 ATTTTTATTC
8597006 ATTTTT ATTTTT ATTTTT -TTATTT CATATTTAT CATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATT-TTT -AT-TTT-T -ATTTTT ATTTTT ATTTTT
* *
8597058 ATGATTTT -TTTTT TTTTTT CTTTT
1 AT--TTTT ATTTTT ATTTTT ATTTT
8597082 GATTATCTGA
Statistics
Matches: 61, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
5 6 0.10
6 38 0.62
7 2 0.03
8 10 0.16
9 5 0.08
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:8597058 original size:21 final size:20
Alignment explanation
Indices: 8597006--8597076 Score: 76
Period size: 21 Copynumber: 3.6 Consensus size: 20
8596996 ATTTTTATTC
*
8597006 ATTTTTATTTTTATTTTTTT
1 ATTTTTATTTTTATATTTTT
* *
8597026 A-TTTCATATTTATCATTTTT
1 ATTTTTATTTTTAT-ATTTTT
8597046 ATTTTTATTTTTATGATTTTT
1 ATTTTTATTTTTAT-ATTTTT
8597067 -TTTTT-TTTTT
1 ATTTTTATTTTT
8597077 CTTTTGATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
19 15 0.35
20 12 0.28
21 16 0.37
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.79
Consensus pattern (20 bp):
ATTTTTATTTTTATATTTTT
Found at i:8597085 original size:22 final size:21
Alignment explanation
Indices: 8597006--8597076 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 21
8596996 ATTTTTATTC
*
8597006 ATTTTTATTTTTAT-TTTTTT
1 ATTTTTATTTTTATGATTTTT
* * *
8597026 ATTTC-ATATTTATCATTTTT
1 ATTTTTATTTTTATGATTTTT
8597046 ATTTTTATTTTTATGATTTTT
1 ATTTTTATTTTTATGATTTTT
8597067 -TTTTT-TTTTT
1 ATTTTTATTTTT
8597077 CTTTTGATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
19 12 0.28
20 18 0.42
21 13 0.30
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.79
Consensus pattern (21 bp):
ATTTTTATTTTTATGATTTTT
Found at i:8597308 original size:31 final size:31
Alignment explanation
Indices: 8597270--8597331 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
8597260 AAAAAAAAAT
8597270 GGAGAAAAGATAG-AGGAGGAATCCGAATAGG
1 GGAGAAAAGATAGAAGGA-GAATCCGAATAGG
8597301 GGAGAAAAGATAGAAGGAGAATCCGAATAGG
1 GGAGAAAAGATAGAAGGAGAATCCGAATAGG
8597332 AGAGGGGAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 26 0.87
32 4 0.13
ACGTcount: A:0.47, C:0.06, G:0.37, T:0.10
Consensus pattern (31 bp):
GGAGAAAAGATAGAAGGAGAATCCGAATAGG
Found at i:8598251 original size:32 final size:32
Alignment explanation
Indices: 8598210--8598279 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
8598200 AGCATTAGAA
8598210 AAGACAGATGCCATTAGGAAAGAAATTGAAAGC
1 AAGA-AGATGCCATTAGGAAAGAAATTGAAAGC
*
8598243 AAGAAGATGCCATTAGGAAAGAAATTGAAGGC
1 AAGAAGATGCCATTAGGAAAGAAATTGAAAGC
8598275 AAGAA
1 AAGAA
8598280 AGAGTTGCTG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 32 0.89
33 4 0.11
ACGTcount: A:0.50, C:0.10, G:0.26, T:0.14
Consensus pattern (32 bp):
AAGAAGATGCCATTAGGAAAGAAATTGAAAGC
Found at i:8600026 original size:58 final size:57
Alignment explanation
Indices: 8599815--8600258 Score: 404
Period size: 59 Copynumber: 7.7 Consensus size: 57
8599805 TTTCAAGAAA
* *
8599815 AAAAAATATTTTT-AGGGAAAAGTTGAAAAGTATCAATTTTTCTCAAAATTAAAGTTTCC
1 AAAAAATATTTTTGA-GGAAAAGTTG-AAAGTATCAATTTTCCTCAAAATTAAA-TTTTC
** * *
8599874 AAAAAATATTTTTGAAAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT-
1 AAAAAATATTTTTG-AGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAATTTTC
* * * * * *
8599931 --TAACTATTTTTTAGGAAAAGTTGAAAGTATTAATTTTCCTCGAAATTAAGGTTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAA-ATTTTC
* * * *
8599987 AAAAAATATTTTTGGGGAAAAGTT-AAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAATTTTC
* * * * *
8600043 AAAAAAAAGATTTTTGAAGAAAAGTTGAAAATATTAATTTTCCTCGAAATTAAAGTTTTC
1 --AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAA-TTTTC
* *
8600103 AAAAAAAATGATTTTTG-GGAAAAAATTGAAAGTATCAATTTTCCTTAAAGA-TAAATTTTC
1 --AAAAAAT-ATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTCAAA-ATTAAATTTTC
*** * * * *
8600163 -AAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAGATTAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAATTTTC
*
8600219 TAAAAAATA-TTTTGGGGAGAAA-TTGAAAGTATCAATTTTC
1 -AAAAAATATTTTTGAGGA-AAAGTTGAAAGTATCAATTTTC
8600259 TCTACACAAA
Statistics
Matches: 311, Mismatches: 56, Indels: 38
0.77 0.14 0.09
Matches are distributed among these distances:
54 31 0.10
55 14 0.05
56 44 0.14
57 51 0.16
58 49 0.16
59 58 0.19
60 27 0.09
61 36 0.12
62 1 0.00
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAATTTTC
Found at i:8601933 original size:21 final size:23
Alignment explanation
Indices: 8601892--8601934 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8601882 AAAATTTGAA
*
8601892 AACTATATAGTTATTTAATTAAT
1 AACTATATACTTATTTAATTAAT
8601915 AACTATATACTT-TTT-ATTAA
1 AACTATATACTTATTTAATTAA
8601935 AAAATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 3 0.16
23 11 0.58
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.49
Consensus pattern (23 bp):
AACTATATACTTATTTAATTAAT
Found at i:8602080 original size:12 final size:12
Alignment explanation
Indices: 8602053--8602087 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
8602043 ATCTTGCCTC
*
8602053 AAATATAATCTTA
1 AAATAT-ATGTTA
8602066 AAATATATGTTA
1 AAATATATGTTA
8602078 AAATATATGT
1 AAATATATGT
8602088 AGATATCAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 15 0.71
13 6 0.29
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.40
Consensus pattern (12 bp):
AAATATATGTTA
Found at i:8605903 original size:17 final size:18
Alignment explanation
Indices: 8605883--8605918 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
8605873 ATTTCAGATT
8605883 TGACACGAAT-ACTTAAA
1 TGACACGAATAACTTAAA
*
8605900 TGACATGAATAACTTAAA
1 TGACACGAATAACTTAAA
8605918 T
1 T
8605919 ACAAATACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (18 bp):
TGACACGAATAACTTAAA
Found at i:8608638 original size:82 final size:82
Alignment explanation
Indices: 8608487--8608638 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 82
8608477 TTAAGTAACT
** * *
8608487 TATTGGCTATAAGCCTTTGACTCAAATACTAACCTATAGCTTATAGGGTTTGGCTTAACTTTTTT
1 TATTGGCTATAAGCCTTTGACTCAAATACTAACCTATAGCTTATAGCATTCGGCATAACTTTTTT
8608552 TTTTTTTTTTGCTTACC
66 TTTTTTTTTTGCTTACC
* *
8608569 TATTGGCTATAA-CCTTTGAC-CTAAATACTAACCTATAGTTTATAGCATTCGTCATAA-TTTTT
1 TATTGGCTATAAGCCTTTGACTC-AAATACTAACCTATAGCTTATAGCATTCGGCATAACTTTTT
*
8608631 TTATTTTT
65 TTTTTTTT
8608639 ACTAACCTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 13 0.21
81 37 0.60
82 12 0.19
ACGTcount: A:0.25, C:0.16, G:0.11, T:0.47
Consensus pattern (82 bp):
TATTGGCTATAAGCCTTTGACTCAAATACTAACCTATAGCTTATAGCATTCGGCATAACTTTTTT
TTTTTTTTTTGCTTACC
Found at i:8613758 original size:2 final size:2
Alignment explanation
Indices: 8613751--8613783 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8613741 TCAAGTTTTC
8613751 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8613784 GAGAGAGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8614748 original size:5 final size:5
Alignment explanation
Indices: 8614735--8614775 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
8614725 CAAAACCTAG
* * *
8614735 AGAAA AGAAG AGAAA AGAAG AGAAA AGAAA GGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A
8614776 CAAGAATAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:8614774 original size:10 final size:10
Alignment explanation
Indices: 8614733--8614773 Score: 66
Period size: 10 Copynumber: 4.1 Consensus size: 10
8614723 GTCAAAACCT
8614733 AGAGAAAAGA
1 AGAGAAAAGA
8614743 AGAGAAAAGA
1 AGAGAAAAGA
8614753 AGAGAAAAGA
1 AGAGAAAAGA
8614763 A-AGGAAAAGA
1 AGA-GAAAAGA
8614773 A
1 A
8614774 AACAAGAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
9 1 0.03
10 29 0.97
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (10 bp):
AGAGAAAAGA
Done.