Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 51 of 147
Found at i:9977075 original size:311 final size:311
Alignment explanation
Indices: 9976512--9977096 Score: 850
Period size: 311 Copynumber: 1.9 Consensus size: 311
9976502 ACCAAAGCAA
* ** * *
9976512 ACAATACCTCACAAGAGTATGAACTATGACAGTTGGGCTAATTTGGGACACCGGATGAGTGCATG
1 ACAATACCTCACAAGAGTATGAACTATAACAGTTAAGCTAATCTGGGACACCGAATGAGTGCATG
** * * * *
9976577 CTTGAGTTCTATAGCCACACGAGCCTGAAGTTTGAGTCTTGGCTCATGACAAGATAAAAAATTTA
66 CCAGAGTTCTAGAGCCACACAAGCCTGAAGGTTGAGTCTTGGCTCATAACAAGATAAAAAATTTA
* *
9976642 GACCATTTCTCAATTTATGCATGTCATCCTTGAGCAGAGGCCATGCTAATCTTCTCTGTATCGTT
131 GACCATTTATCAATTTATGCATGTCATCCCTGAGCAGAGGCCATGCTAATCTTCTCTGTATCGTT
* * ** *
9976707 TCAATTTTATCATATATCTCCTTTTACTTTACTTGTTACGGGCCAAAACTCAACCTTCAAGCCCG
196 CCAATTTTATCATATATCTCCTTTTACTTTACTTGTCACAAGCCAAAACTCAACCTTCAAGCCCA
9976772 CACAGCTCCAGGACCTGGGCATACACTCATCCTACGTTCCAAGACAATTAG
261 CACAGCTCCAGGACCTGGGCATACACTCATCCTACGTTCCAAGACAATTAG
*
9976823 ACAATACCTCACAAG-GATATGAACTGTAACAGTTAAGCTAATCTGGGACACCGAATGAGTGCAT
1 ACAATACCTCACAAGAG-TATGAACTATAACAGTTAAGCTAATCTGGGACACCGAATGAGTGCAT
* * * *
9976887 GCCCAG-GTTTTGGAGCCACACAAGCTTGAGGGTTGAGTCTTGGCTCATAACAAGATAAAAAATT
65 G-CCAGAGTTCTAGAGCCACACAAGCCTGAAGGTTGAGTCTTGGCTCATAACAAGATAAAAAATT
* * * *
9976951 TAGACCATTTATCGATTTATGCATGTCATCCCTGCGTAGAGGTCATGCTAATCTTCTCTGTATCG
129 TAGACCATTTATCAATTTATGCATGTCATCCCTGAGCAGAGGCCATGCTAATCTTCTCTGTATCG
* * *
9977016 TTCCAATTTTATCATATATCTCTTTTTACTTTACTTGTCACAAGCCAAGACTCAACCTTCAGGCC
194 TTCCAATTTTATCATATATCTCCTTTTACTTTACTTGTCACAAGCCAAAACTCAACCTTCAAGCC
* *
9977081 CACGCAGCTCTAGGAC
259 CACACAGCTCCAGGAC
9977097 TCGAGCATGC
Statistics
Matches: 240, Mismatches: 32, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
310 1 0.00
311 237 0.99
312 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (311 bp):
ACAATACCTCACAAGAGTATGAACTATAACAGTTAAGCTAATCTGGGACACCGAATGAGTGCATG
CCAGAGTTCTAGAGCCACACAAGCCTGAAGGTTGAGTCTTGGCTCATAACAAGATAAAAAATTTA
GACCATTTATCAATTTATGCATGTCATCCCTGAGCAGAGGCCATGCTAATCTTCTCTGTATCGTT
CCAATTTTATCATATATCTCCTTTTACTTTACTTGTCACAAGCCAAAACTCAACCTTCAAGCCCA
CACAGCTCCAGGACCTGGGCATACACTCATCCTACGTTCCAAGACAATTAG
Found at i:9985593 original size:24 final size:24
Alignment explanation
Indices: 9985561--9985611 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
9985551 ATTATTAGTA
*
9985561 ATATAATAATAACTAATTATAATT
1 ATATAATAAAAACTAATTATAATT
* *
9985585 ATATTATAAAAATTAATTATAATT
1 ATATAATAAAAACTAATTATAATT
9985609 ATA
1 ATA
9985612 AAAATATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
ATATAATAAAAACTAATTATAATT
Found at i:9985623 original size:18 final size:19
Alignment explanation
Indices: 9985580--9985616 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
9985570 TAACTAATTA
9985580 TAATTAT-ATTATAAAAAT
1 TAATTATAATTATAAAAAT
9985598 TAATTATAATTATAAAAAT
1 TAATTATAATTATAAAAAT
9985617 ATTTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TAATTATAATTATAAAAAT
Found at i:9987814 original size:17 final size:16
Alignment explanation
Indices: 9987774--9987826 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 16
9987764 TAATAATTTT
*
9987774 AATAATAATATTAATAAT
1 AATAATAAT-TTAA-AAA
9987792 AATAATAATTTAAAAA
1 AATAATAATTTAAAAA
9987808 AATTAATAATTTAAAAA
1 AA-TAATAATTTAAAAA
9987825 AA
1 AA
9987827 AAAGGAAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
16 4 0.12
17 20 0.61
18 9 0.27
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AATAATAATTTAAAAA
Found at i:9987817 original size:3 final size:3
Alignment explanation
Indices: 9987758--9987800 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
9987748 CATTTCAATT
** *
9987758 TAA TAA TAA TAA TTT TAA TAA TAA TAT TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
9987801 TTAAAAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (3 bp):
TAA
Found at i:9987906 original size:23 final size:23
Alignment explanation
Indices: 9987880--9987945 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 23
9987870 TGCCGCCCCC
* *
9987880 GACCAGCCCTCTGTCCAGCCTTT
1 GACCAGCCCCCTGTCCAGCCTCT
*
9987903 GACCAGCCCCCTGTCTAGCCTCT
1 GACCAGCCCCCTGTCCAGCCTCT
** *
9987926 GACCAGTGCCCTGTTCAGCC
1 GACCAGCCCCCTGTCCAGCC
9987946 CACCTACAGC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.14, C:0.44, G:0.20, T:0.23
Consensus pattern (23 bp):
GACCAGCCCCCTGTCCAGCCTCT
Found at i:9988903 original size:23 final size:22
Alignment explanation
Indices: 9988872--9988917 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
9988862 ATTTTAAGTT
*
9988872 TTTATATTTATGCATGATAAATA
1 TTTAAATTTAT-CATGATAAATA
*
9988895 TTTAAATTTATTATGATAAATA
1 TTTAAATTTATCATGATAAATA
9988917 T
1 T
9988918 CTAATTGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (22 bp):
TTTAAATTTATCATGATAAATA
Found at i:9991196 original size:24 final size:24
Alignment explanation
Indices: 9991159--9991204 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
9991149 ATATTATTTT
* * *
9991159 TTTCAAAGTGAATGTATGAAATAA
1 TTTCAAAATAAATGTATAAAATAA
9991183 TTTCAAAATAAATGTATAAAAT
1 TTTCAAAATAAATGTATAAAAT
9991205 TATTGAACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.35
Consensus pattern (24 bp):
TTTCAAAATAAATGTATAAAATAA
Found at i:9996000 original size:11 final size:11
Alignment explanation
Indices: 9995962--9996005 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
9995952 GAAAAAATAC
9995962 AAAA-AAAAAG
1 AAAATAAAAAG
*
9995972 AAAAAAAAGAAAG
1 -AAAATAA-AAAG
9995985 AAAATAAAAAG
1 AAAATAAAAAG
9995996 AAAATAAAAA
1 AAAATAAAAA
9996006 AGTGGCAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 18 0.60
12 8 0.27
13 4 0.13
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.05
Consensus pattern (11 bp):
AAAATAAAAAG
Found at i:9997231 original size:3 final size:3
Alignment explanation
Indices: 9997217--9997266 Score: 57
Period size: 3 Copynumber: 16.3 Consensus size: 3
9997207 AGGTTGTTCT
* *
9997217 ATA ATA ATTA ATA ATA ATA ACA ATA ATA A-A CAAA ATA ATA ATA ATA
1 ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
9997263 ATA A
1 ATA A
9997267 AAAGTTATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
2 1 0.02
3 36 0.88
4 4 0.10
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:9997583 original size:20 final size:20
Alignment explanation
Indices: 9997555--9997594 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
9997545 AAAATTTAAA
*
9997555 AAAATTAAAACCAAAACCCT
1 AAAACTAAAACCAAAACCCT
* *
9997575 AAAACTAAATCCTAAACCCT
1 AAAACTAAAACCAAAACCCT
9997595 CTAAACCTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.28, G:0.00, T:0.17
Consensus pattern (20 bp):
AAAACTAAAACCAAAACCCT
Found at i:9997750 original size:60 final size:60
Alignment explanation
Indices: 9997585--9997730 Score: 197
Period size: 60 Copynumber: 2.5 Consensus size: 60
9997575 AAAACTAAAT
* * ** *
9997585 CCTAAACCCTCTAAAC-CTAAAACTAAGCCCTAAAACACTCTAAATCC-CGAAATTGAAAC
1 CCTAAACCCTCAAAACTGTAAAACTAAATCCTAAAACACTCTAAA-CCTAGAAATTGAAAC
* *
9997644 CCTAAACCCTCAGAACTTTAAAACTAAATCCTAAAACACTCTAAACCTAGAAATTGAAAC
1 CCTAAACCCTCAAAACTGTAAAACTAAATCCTAAAACACTCTAAACCTAGAAATTGAAAC
*
9997704 CCTAAATCCTCAAAACTGTAAAACTAA
1 CCTAAACCCTCAAAACTGTAAAACTAA
9997731 GACTTTAAAC
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
59 16 0.21
60 60 0.79
ACGTcount: A:0.46, C:0.29, G:0.05, T:0.21
Consensus pattern (60 bp):
CCTAAACCCTCAAAACTGTAAAACTAAATCCTAAAACACTCTAAACCTAGAAATTGAAAC
Found at i:9997797 original size:14 final size:14
Alignment explanation
Indices: 9997746--9997797 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
9997736 TAAACCCTTC
9997746 AAACCCTAAAATCA
1 AAACCCTAAAATCA
* *** *
9997760 AAAACCTAATCCCC
1 AAACCCTAAAATCA
*
9997774 AAACCTTAAAATCA
1 AAACCCTAAAATCA
9997788 AAACCCTAAA
1 AAACCCTAAA
9997798 CTTTTTAAAC
Statistics
Matches: 26, Mismatches: 12, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15
Consensus pattern (14 bp):
AAACCCTAAAATCA
Found at i:9997907 original size:21 final size:22
Alignment explanation
Indices: 9997883--9997936 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
9997873 ACCCTTGACC
9997883 TTAAACTCTAAAATC-AAAACT
1 TTAAACTCTAAAATCTAAAACT
* * *
9997904 TTAAACCCCAAAATCTGAAACT
1 TTAAACTCTAAAATCTAAAACT
**
9997926 CGAAACTCTAA
1 TTAAACTCTAA
9997937 CCCTAAAATC
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.48, C:0.24, G:0.04, T:0.24
Consensus pattern (22 bp):
TTAAACTCTAAAATCTAAAACT
Found at i:9997968 original size:15 final size:14
Alignment explanation
Indices: 9997942--9998003 Score: 63
Period size: 15 Copynumber: 4.3 Consensus size: 14
9997932 TCTAACCCTA
9997942 AAATCC-AAAATCCC
1 AAATCCTAAAAT-CC
9997956 AAATCCTAAAATCC
1 AAATCCTAAAATCC
* *
9997970 AAAACCTTAAAATTC
1 AAATCC-TAAAATCC
*
9997985 AAATCCAAAAATCGC
1 AAATCCTAAAATC-C
9998000 AAAT
1 AAAT
9998004 TTGGTACGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 18 0.45
15 22 0.55
ACGTcount: A:0.53, C:0.26, G:0.02, T:0.19
Consensus pattern (14 bp):
AAATCCTAAAATCC
Found at i:10000379 original size:41 final size:41
Alignment explanation
Indices: 10000333--10000411 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
10000323 TCCCTGCAAC
* *
10000333 ATAACATTACATTTCTTGTATACACATTCATGGTTGACAAT
1 ATAACATTACATTCCTTGCATACACATTCATGGTTGACAAT
10000374 ATAACATTACATTCCTTGCATACACATTCATGGTTGAC
1 ATAACATTACATTCCTTGCATACACATTCATGGTTGAC
10000412 GAAATTTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (41 bp):
ATAACATTACATTCCTTGCATACACATTCATGGTTGACAAT
Found at i:10004072 original size:15 final size:15
Alignment explanation
Indices: 10004045--10004085 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
10004035 AAGTAACTTT
10004045 CAAGATAAAAAAAAAA
1 CAAGAT-AAAAAAAAA
10004061 CAAGATAAAAAAAAA
1 CAAGATAAAAAAAAA
*
10004076 AAAGA-AAAAA
1 CAAGATAAAAA
10004086 GGTTTTCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 5 0.21
15 13 0.54
16 6 0.25
ACGTcount: A:0.83, C:0.05, G:0.07, T:0.05
Consensus pattern (15 bp):
CAAGATAAAAAAAAA
Found at i:10004073 original size:17 final size:16
Alignment explanation
Indices: 10004045--10004085 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
10004035 AAGTAACTTT
10004045 CAAGATAAAAAAAAAA
1 CAAGATAAAAAAAAAA
10004061 CAAGATAAAAAAAAAA
1 CAAGATAAAAAAAAAA
10004077 -AAGA-AAAAA
1 CAAGATAAAAA
10004086 GGTTTTCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.20
15 4 0.16
16 16 0.64
ACGTcount: A:0.83, C:0.05, G:0.07, T:0.05
Consensus pattern (16 bp):
CAAGATAAAAAAAAAA
Found at i:10006676 original size:110 final size:108
Alignment explanation
Indices: 10006544--10006895 Score: 431
Period size: 110 Copynumber: 3.2 Consensus size: 108
10006534 TTGAGATCTA
* * * * *
10006544 TAAGATCTCCAGGCATGATTTCTAAGACTTTCGAGTATAATTTCAATTCACAGTGTTGTCCATAT
1 TAAGACCTCCAAGCATAATTTCTAAGAC-TTCGAGTATAATTTCAATTTACGGTGTTGTCCA-AT
*
10006609 CGATTCTTTATTTTTTGACTTGTGATGTTGTCCCAGTTGATTCTC
64 CGATTCTTTATTTTTTGACTTGTGATGTTGTCCCAGTCGATTCTC
* * * ** *
10006654 TAAGACCTCCAAGCATGATTTCTAAGACCTCCAGTCATAATTTTGATTTACGGTGTTGTCCCGAT
1 TAAGACCTCCAAGCATAATTTCTAAGACTTCGAGT-ATAATTTCAATTTACGGTGTTGT-CCAAT
* *
10006719 CAATTCTTTATTTTTTGACTTAT-AGTGTTGTCCCAGTCGATTCTC
64 CGATTCTTTATTTTTTGACTTGTGA-TGTTGTCCCAGTCGATTCTC
* *
10006764 TAAGACCTCAAAGCATAATCTT-TAAGACCTTCGAGCATAATTTCAATTTACGGTGTTGTCCCAA
1 TAAGACCTCCAAGCATAAT-TTCTAAGA-CTTCGAGTATAATTTCAATTTACGGTGTTGT-CCAA
* * *
10006828 TCGATTCTTTATTTTTTGACTTGTGGTGTTATCCCAATCGATTCTC
63 TCGATTCTTTATTTTTTGACTTGTGATGTTGTCCCAGTCGATTCTC
10006874 TAAGACCT-CAAGGCATAATTTC
1 TAAGACCTCCAA-GCATAATTTC
10006896 GATTCGTGGT
Statistics
Matches: 208, Mismatches: 26, Indels: 16
0.83 0.10 0.06
Matches are distributed among these distances:
109 10 0.05
110 189 0.91
111 9 0.04
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.40
Consensus pattern (108 bp):
TAAGACCTCCAAGCATAATTTCTAAGACTTCGAGTATAATTTCAATTTACGGTGTTGTCCAATCG
ATTCTTTATTTTTTGACTTGTGATGTTGTCCCAGTCGATTCTC
Found at i:10006696 original size:22 final size:22
Alignment explanation
Indices: 10006652--10006696 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
10006642 CAGTTGATTC
*
10006652 TCTAAGACCTCCAAGCATGATT
1 TCTAAGACCTCCAAGCATAATT
10006674 TCTAAGACCTCC-AGTCATAATT
1 TCTAAGACCTCCAAG-CATAATT
10006696 T
1 T
10006697 TGATTTACGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (22 bp):
TCTAAGACCTCCAAGCATAATT
Found at i:10006994 original size:22 final size:22
Alignment explanation
Indices: 10006954--10007015 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
10006944 TTGTCCTAGT
10006954 TGATTTTGTAAGACCTCCGAGCA
1 TGATTTT-TAAGACCTCCGAGCA
* *
10006977 TGATTTTTAATACCTCCGGGCA
1 TGATTTTTAAGACCTCCGAGCA
* *
10006999 TAATCTTTAAGACCTCC
1 TGATTTTTAAGACCTCC
10007016 AGGCATAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 27 0.79
23 7 0.21
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (22 bp):
TGATTTTTAAGACCTCCGAGCA
Found at i:10007020 original size:22 final size:21
Alignment explanation
Indices: 10006962--10007024 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
10006952 GTTGATTTTG
* *
10006962 TAAGACCTCCGAGCATGATTTT
1 TAAGACCTCCG-GCATAATCTT
*
10006984 TAATACCTCCGGGCATAATCTT
1 TAAGACCTCC-GGCATAATCTT
10007006 TAAGACCTCCAGGCATAAT
1 TAAGACCTCC-GGCATAAT
10007025 TTCGATTCGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 34 0.97
23 1 0.03
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (21 bp):
TAAGACCTCCGGCATAATCTT
Found at i:10007123 original size:22 final size:21
Alignment explanation
Indices: 10007094--10007203 Score: 96
Period size: 22 Copynumber: 5.0 Consensus size: 21
10007084 GTCGATTCTG
*
10007094 TAAGACCTCCAGGCATGATTTT
1 TAAGACCTCC-GGCATAATTTT
* *
10007116 TAAAACCTCCGAGCATAATCTT
1 TAAGACCTCCG-GCATAATTTT
* *
10007138 TAAGACCT-CGGAACATGATTTC
1 TAAGACCTCCGG--CATAATTTT
* *
10007160 TAAGACCTTCGGGCATAATCTT
1 TAAGACC-TCCGGCATAATTTT
10007182 TAAGACCTCCAGGCATAATTTT
1 TAAGACCTCC-GGCATAATTTT
10007204 GATTCATGGT
Statistics
Matches: 69, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
20 1 0.01
21 5 0.07
22 60 0.87
23 1 0.01
24 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (21 bp):
TAAGACCTCCGGCATAATTTT
Found at i:10007157 original size:44 final size:44
Alignment explanation
Indices: 10007107--10007190 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
10007097 GACCTCCAGG
*
10007107 CATGATTTTTAAAACCTCCGAGCATAATCTTTAAGACCTCGGAA
1 CATGATTTCTAAAACCTCCGAGCATAATCTTTAAGACCTCGGAA
* * *
10007151 CATGATTTCTAAGACCTTCGGGCATAATCTTTAAGACCTC
1 CATGATTTCTAAAACCTCCGAGCATAATCTTTAAGACCTC
10007191 CAGGCATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (44 bp):
CATGATTTCTAAAACCTCCGAGCATAATCTTTAAGACCTCGGAA
Found at i:10007159 original size:132 final size:132
Alignment explanation
Indices: 10006874--10007146 Score: 404
Period size: 132 Copynumber: 2.1 Consensus size: 132
10006864 ATCGATTCTC
* * * *
10006874 TAAGACCTCAAGGCATAATTTCGATTCGTGGTGTTGTCACGATTGATTCCTTATTTTTTGACTTG
1 TAAGACCTCCAGGCATAATTTCGATTCGTGATGTTGTCACGATCGATTCCTTATTTTTTGACTTA
** * * * * * *
10006939 TGGTGTTGTCCTAGTTGATTTTGTAAGACCTCCGAGCATGATTTTTAATACCTCCGGGCATAATC
66 CAGTGTTATCCCAGTCGATTCTGTAAGACCTCCGAGCATGATTTTTAAAACCTCCGAGCATAATC
10007004 TT
131 TT
* *
10007006 TAAGACCTCCAGGCATAATTTCGATTCGTGATGTTGTCTCGATCGATTCTTTATTTTTTGACTTA
1 TAAGACCTCCAGGCATAATTTCGATTCGTGATGTTGTCACGATCGATTCCTTATTTTTTGACTTA
10007071 CAGTGTTATCCCAGTCGATTCTGTAAGACCTCC-AGGCATGATTTTTAAAACCTCCGAGCATAAT
66 CAGTGTTATCCCAGTCGATTCTGTAAGACCTCCGA-GCATGATTTTTAAAACCTCCGAGCATAAT
10007135 CTT
130 CTT
10007138 TAAGACCTC
1 TAAGACCTC
10007147 GGAACATGAT
Statistics
Matches: 126, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
131 1 0.01
132 125 0.99
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (132 bp):
TAAGACCTCCAGGCATAATTTCGATTCGTGATGTTGTCACGATCGATTCCTTATTTTTTGACTTA
CAGTGTTATCCCAGTCGATTCTGTAAGACCTCCGAGCATGATTTTTAAAACCTCCGAGCATAATC
TT
Found at i:10007238 original size:308 final size:308
Alignment explanation
Indices: 10006874--10007452 Score: 797
Period size: 308 Copynumber: 1.9 Consensus size: 308
10006864 ATCGATTCTC
* *
10006874 TAAGACCTCAAGGCATAATTTCGATTCGTGGTGTTGTCACGATTGATTCCTTATTTTTTGACTTG
1 TAAGACCTCAAGGCATAATTTCGATTCATGGTGTTATCACGATTGATTCCTTATTTTTTGACTTG
* * * ** * * *
10006939 TGGTGTTGTCCTAGTTGATT-TTGTAAGACCTCC-GAGCATGATTTTTAATACCTCCGGGCATAA
66 CGATGTTGTCCCAGTCAATTCTT-TAAGACCTCCAG-GCATGATTTCTAAGACCTCCGAGCATAA
**
10007002 TCTTTAAGACCTCCAGGCATAATTTCGATTCGTGATGTTGT-CTCGATCGATTCTTTATTTTTTG
129 TCTTTAAGACCTCCAGGCATAATTTCGATTCGTGATGTTGTCCT-GATCGATTCTTTATTTTTCA
* * *
10007066 ACTTACAGTGTTATCCCAGTCGATTCTGTAAGACCTCCAGGCATGATTTTTAAAACCTCCGA-GC
193 ACTTACAGCGTTATCCCAATCGATTCTGTAAGACCTCCAGGCATGATTTCTAAAACCT-CGAGGC
10007130 ATAATCTTTAAGACCTCGGAACATGATTTCTAAGACCTTCGGGCATAATCTT
257 ATAATCTTTAAGACCTCGGAACATGATTTCTAAGACCTTCGGGCATAATCTT
* * * *
10007182 TAAGACCTCCAGGCATAATTTTGATTCATGGTGTTATCCCGATTGATTCTTTATTTTTTGACTTG
1 TAAGACCTCAAGGCATAATTTCGATTCATGGTGTTATCACGATTGATTCCTTATTTTTTGACTTG
* * *
10007247 CGATGTTGTCCCAGTCAATTCTTTAAGATCTCCAGGCATGATTTCTAAGACTTTCGAGCATAATC
66 CGATGTTGTCCCAGTCAATTCTTTAAGACCTCCAGGCATGATTTCTAAGACCTCCGAGCATAATC
* * * * *
10007312 TTTAAGACCTTCAGTCATAATTTTGATTCGTGGTGTTGTCCTGATTGATTCTTTATTTTTCAACT
131 TTTAAGACCTCCAGGCATAATTTCGATTCGTGATGTTGTCCTGATCGATTCTTTATTTTTCAACT
* ** * **
10007377 TACAGCGTTGTCCCAATCGATTCTGTAAGACCTCTGGGCATGATTTCTAAGACCTTTAGGCATAA
196 TACAGCGTTATCCCAATCGATTCTGTAAGACCTCCAGGCATGATTTCTAAAACCTCGAGGCATAA
10007442 TCTTTAAGACC
261 TCTTTAAGACC
10007453 ACTAGGCATA
Statistics
Matches: 234, Mismatches: 33, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
307 1 0.00
308 228 0.97
309 5 0.02
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (308 bp):
TAAGACCTCAAGGCATAATTTCGATTCATGGTGTTATCACGATTGATTCCTTATTTTTTGACTTG
CGATGTTGTCCCAGTCAATTCTTTAAGACCTCCAGGCATGATTTCTAAGACCTCCGAGCATAATC
TTTAAGACCTCCAGGCATAATTTCGATTCGTGATGTTGTCCTGATCGATTCTTTATTTTTCAACT
TACAGCGTTATCCCAATCGATTCTGTAAGACCTCCAGGCATGATTTCTAAAACCTCGAGGCATAA
TCTTTAAGACCTCGGAACATGATTTCTAAGACCTTCGGGCATAATCTT
Found at i:10007261 original size:176 final size:176
Alignment explanation
Indices: 10006962--10007321 Score: 524
Period size: 176 Copynumber: 2.0 Consensus size: 176
10006952 GTTGATTTTG
* * *
10006962 TAAGACCTCCGAGCATGATTTTTAATACCTCCGGGCATAATCTTTAAGACCTCCAGGCATAATTT
1 TAAGACCTCCGAACATGATTTCTAAGACCTCCGGGCATAATCTTTAAGACCTCCAGGCATAATTT
* * * *
10007027 CGATTCGTGATGTTGTCTCGATCGATTCTTTATTTTTTGACTTACAGTGTTATCCCAGTCGATTC
66 CGATTCATGATGTTATCCCGATCGATTCTTTATTTTTTGACTTACAGTGTTATCCCAGTCAATTC
*
10007092 TGTAAGACCTCCAGGCATGATTTTTAAAACCTCCGAGCATAATCTT
131 TGTAAGACCTCCAGGCATGATTTCTAAAACCTCCGAGCATAATCTT
* *
10007138 TAAGACCTCGGAACATGATTTCTAAGACCTTCGGGCATAATCTTTAAGACCTCCAGGCATAATTT
1 TAAGACCTCCGAACATGATTTCTAAGACCTCCGGGCATAATCTTTAAGACCTCCAGGCATAATTT
* * * * *
10007203 TGATTCATGGTGTTATCCCGATTGATTCTTTATTTTTTGACTTGC-GATGTTGTCCCAGTCAATT
66 CGATTCATGATGTTATCCCGATCGATTCTTTATTTTTTGACTTACAG-TGTTATCCCAGTCAATT
* * * * *
10007267 CTTTAAGATCTCCAGGCATGATTTCTAAGACTTTCGAGCATAATCTT
130 CTGTAAGACCTCCAGGCATGATTTCTAAAACCTCCGAGCATAATCTT
10007314 TAAGACCT
1 TAAGACCT
10007322 TCAGTCATAA
Statistics
Matches: 163, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
175 1 0.01
176 162 0.99
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (176 bp):
TAAGACCTCCGAACATGATTTCTAAGACCTCCGGGCATAATCTTTAAGACCTCCAGGCATAATTT
CGATTCATGATGTTATCCCGATCGATTCTTTATTTTTTGACTTACAGTGTTATCCCAGTCAATTC
TGTAAGACCTCCAGGCATGATTTCTAAAACCTCCGAGCATAATCTT
Found at i:10007427 original size:22 final size:22
Alignment explanation
Indices: 10007402--10007467 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
10007392 ATCGATTCTG
* *
10007402 TAAGACCTCTGGGCATGATTTC
1 TAAGACCTCTAGGCATAATTTC
*
10007424 TAAGACCTTTAGGCATAATCTT-
1 TAAGACCTCTAGGCATAAT-TTC
*
10007446 TAAGACCACTAGGCATAATTTC
1 TAAGACCTCTAGGCATAATTTC
10007468 AATTCGCAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (22 bp):
TAAGACCTCTAGGCATAATTTC
Found at i:10007473 original size:132 final size:130
Alignment explanation
Indices: 10007138--10007555 Score: 462
Period size: 132 Copynumber: 3.2 Consensus size: 130
10007128 GCATAATCTT
* ** *
10007138 TAAGACCTC-GGAACATGATTTCTAAGACCTTCGGGCATAATCTTTAAGACCTCCAGGCATAATT
1 TAAGACCTCTGG-GCATGATTTCTAAGACCTTTAGGCATAATCTTTAAGACC-CTAGGCATAATT
* * * * * *
10007202 TTGATTCATGGTGTTATCCCGATTGATTCTTTATTTTTTGACTTGCGATGTTGTCCCAGTCAATT
64 TTGATTCGTGGTGTTGTCCTGATTGATTCTTTATTTTTCGACTTGCG-TGTTGTCCCAATCGATT
*
10007267 CTT
128 CTC
* ** * * *
10007270 TAAGATCTCCAGGCATGATTTCTAAGA-CTTTCGAGCATAATCTTTAAGACCTTCAGTCATAATT
1 TAAGACCTCTGGGCATGATTTCTAAGACCTTTAG-GCATAATCTTTAAGACCCT-AGGCATAATT
* * *
10007334 TTGATTCGTGGTGTTGTCCTGATTGATTCTTTATTTTTCAACTTACAGCGTTGTCCCAATCGATT
64 TTGATTCGTGGTGTTGTCCTGATTGATTCTTTATTTTTCGACTTGC-GTGTTGTCCCAATCGATT
*
10007399 CTG
128 CTC
10007402 TAAGACCTCTGGGCATGATTTCTAAGACCTTTAGGCATAATCTTTAAGACCACTAGGCATAATTT
1 TAAGACCTCTGGGCATGATTTCTAAGACCTTTAGGCATAATCTTTAAGACC-CTAGGCATAATTT
** *** * * * *
10007467 CAATTCGCAATGTTGTCTTGATCGATTCTTTATTTTTCGACTTGTGGTGTTATCCCAATCGATTC
65 TGATTCGTGGTGTTGTCCTGATTGATTCTTTATTTTTCGACTTG-CGTGTTGTCCCAATCGATTC
10007532 TC
129 TC
* *
10007534 TAAGACGTCTGGGCATAATTTC
1 TAAGACCTCTGGGCATGATTTC
10007556 GATTCGTAGT
Statistics
Matches: 240, Mismatches: 39, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
131 4 0.02
132 228 0.95
133 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (130 bp):
TAAGACCTCTGGGCATGATTTCTAAGACCTTTAGGCATAATCTTTAAGACCCTAGGCATAATTTT
GATTCGTGGTGTTGTCCTGATTGATTCTTTATTTTTCGACTTGCGTGTTGTCCCAATCGATTCTC
Found at i:10007598 original size:88 final size:88
Alignment explanation
Indices: 10007457--10007627 Score: 218
Period size: 88 Copynumber: 1.9 Consensus size: 88
10007447 AAGACCACTA
* * * * ** *
10007457 GGCATAATTTCAATTCGCAATGTTGTCTTGATCGATTCTTTATTTTTCGACTTGTGGTGTTATCC
1 GGCATAATTTCAATTCGCAATGTTATCTTAATCGATTCTTAATTTTTCAACTTGCAGTATTATCC
*
10007522 CAATCGATTCTCTAAGACGTCTG
66 CAATCGATTCTATAAGACGTCTG
* * *
10007545 GGCATAATTTCGATTCGTAGTGTTATCTTAATCGATTCCTTAATTTTT-AACTTGCAGTATTATC
1 GGCATAATTTCAATTCGCAATGTTATCTTAATCGATT-CTTAATTTTTCAACTTGCAGTATTATC
*
10007609 CCAGTCGATTCTATAAGAC
65 CCAATCGATTCTATAAGAC
10007628 CTCCGAGCAT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
88 61 0.87
89 9 0.13
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (88 bp):
GGCATAATTTCAATTCGCAATGTTATCTTAATCGATTCTTAATTTTTCAACTTGCAGTATTATCC
CAATCGATTCTATAAGACGTCTG
Found at i:10007659 original size:22 final size:22
Alignment explanation
Indices: 10007622--10007664 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10007612 GTCGATTCTA
*
10007622 TAAGACCTCCGAGCATGATTTT
1 TAAGACCTCCGAGCATAATTTT
10007644 TAAGACCTCC-AGGCATAATTT
1 TAAGACCTCCGA-GCATAATTT
10007665 CGATTCATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (22 bp):
TAAGACCTCCGAGCATAATTTT
Found at i:10007736 original size:110 final size:110
Alignment explanation
Indices: 10007545--10007772 Score: 303
Period size: 110 Copynumber: 2.1 Consensus size: 110
10007535 AAGACGTCTG
* ** *
10007545 GGCATAATTTCGATTCGTAGTGTTATCTTAATCGATTCCTTAATTTTTAACTTGCAGTATTATCC
1 GGCATAATTTCGATTCATAGTGTTATCCCAATCAATTCCTTAATTTTTAACTTGCAGTATTATCC
* *
10007610 CAGTCGATTCTATAAGACCTCCGAGCATGATTTTTAAGACCTCCA
66 CAGTCGATTATATAAGACCTCCAAGCATGATTTTTAAGACCTCCA
* * * * ** * *
10007655 GGCATAATTTCGATTCATGGTGTTGTCCCGATCAATTCCTTATTTTTTAACTTGTGGTGTTCTCC
1 GGCATAATTTCGATTCATAGTGTTATCCCAATCAATTCCTTAATTTTTAACTTGCAGTATTATCC
* * *
10007720 CAGTTGATTATGTAAGACCTCCAAGCATGATTTTTAAGACCTCTA
66 CAGTCGATTATATAAGACCTCCAAGCATGATTTTTAAGACCTCCA
10007765 GGCATAAT
1 GGCATAAT
10007773 CTTTAAGACC
Statistics
Matches: 101, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
110 101 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (110 bp):
GGCATAATTTCGATTCATAGTGTTATCCCAATCAATTCCTTAATTTTTAACTTGCAGTATTATCC
CAGTCGATTATATAAGACCTCCAAGCATGATTTTTAAGACCTCCA
Found at i:10007790 original size:20 final size:21
Alignment explanation
Indices: 10007732--10007792 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
10007722 GTTGATTATG
* * *
10007732 TAAGACCTCCAAGCATGATTTT
1 TAAGACCT-CAGGCATAATCTT
10007754 TAAGACCTCTAGGCATAATCTT
1 TAAGACCTC-AGGCATAATCTT
10007776 TAAGACCTC-GGCATAAT
1 TAAGACCTCAGGCATAAT
10007793 TTCAATTCGC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.23
21 1 0.03
22 26 0.74
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (21 bp):
TAAGACCTCAGGCATAATCTT
Found at i:10007899 original size:22 final size:22
Alignment explanation
Indices: 10007882--10007924 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
10007872 GGGCATGATT
10007882 TTTAAGACCTTCAAGCATAATC
1 TTTAAGACCTTCAAGCATAATC
**
10007904 TTTAAGACCTTCGGGCATAAT
1 TTTAAGACCTTCAAGCATAAT
10007925 TTCAATTCGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.33
Consensus pattern (22 bp):
TTTAAGACCTTCAAGCATAATC
Found at i:10007989 original size:132 final size:132
Alignment explanation
Indices: 10007622--10008124 Score: 526
Period size: 132 Copynumber: 3.8 Consensus size: 132
10007612 GTCGATTCTA
* * * * * * * ***
10007622 TAAGACCTCCGAGCATGATTTTTAAGACCTCCAGGCATAATTTCGATTCATGGTGTTGTCCCGAT
1 TAAGACCTTCAAGCATAATCTTTAAGACCTTCGGGCATAATTTCAATTCGCAGTGTTGTCCCGAT
* * * * * * ***
10007687 CAATTCCTTATTTTTTAACTTGTGGTGTTCTCCCAGTTGATTATGTAAGACCTCCAAGCATGATT
66 CGATTCCTTATTTTTTAACTTGCGGTGTTGTCCCAATCGATTTTGTAAGACCTCTGGGCATGATT
10007752 TT
131 TT
* * ***
10007754 TAAGACC-TCTAGGCATAATCTTTAAGACC-TC-GGCATAATTTCAATTCGCAATGTTGTTTTGA
1 TAAGACCTTC-AAGCATAATCTTTAAGACCTTCGGGCATAATTTCAATTCGCAGTGTTGTCCCGA
* * * * *
10007816 TCGATTCTTTATTTTTTGACTTGCGGTGTTGTTCTAGTCGATTTTGTAAGACCTCTGGGCATGAT
65 TCGATTCCTTATTTTTTAACTTGCGGTGTTGTCCCAATCGATTTTGTAAGACCTCTGGGCATGAT
10007881 TTT
130 TTT
** *
10007884 TAAGACCTTCAAGCATAATCTTTAAGACCTTCGGGCATAATTTCAATTCGTGGTGTTGTCTCGAT
1 TAAGACCTTCAAGCATAATCTTTAAGACCTTCGGGCATAATTTCAATTCGCAGTGTTGTCCCGAT
* * * *
10007949 CGATTCCTTATTTTTTGACTTGTGGTATTGTCCCAATCGATTCTGTAAGACCTCTGGGCATGATT
66 CGATTCCTTATTTTTTAACTTGCGGTGTTGTCCCAATCGATTTTGTAAGACCTCTGGGCATGATT
*
10008014 TC
131 TT
** * * * ** * *
10008016 TAAGACCTTCGGGCATAATCTTTAAGACATTTGGACATAATTTTGATTCGCATTGTTGTCCCAAT
1 TAAGACCTTCAAGCATAATCTTTAAGACCTTCGGGCATAATTTCAATTCGCAGTGTTGTCCCGAT
* * * *
10008081 CGATTCTTTATTTTTCAACTTGCGGTGTTGTCCTAATCAATTTT
66 CGATTCCTTATTTTTTAACTTGCGGTGTTGTCCCAATCGATTTT
10008125 TTATTCCTCA
Statistics
Matches: 307, Mismatches: 60, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
130 104 0.34
131 6 0.02
132 197 0.64
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (132 bp):
TAAGACCTTCAAGCATAATCTTTAAGACCTTCGGGCATAATTTCAATTCGCAGTGTTGTCCCGAT
CGATTCCTTATTTTTTAACTTGCGGTGTTGTCCCAATCGATTTTGTAAGACCTCTGGGCATGATT
TT
Found at i:10008041 original size:22 final size:22
Alignment explanation
Indices: 10007994--10008058 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
10007984 ATCGATTCTG
*
10007994 TAAGACCTCTGGGCATGATTTC
1 TAAGACCTCTGGGCATAATTTC
10008016 TAAGACCT-TCGGGCATAATCTT-
1 TAAGACCTCT-GGGCATAAT-TTC
* * *
10008038 TAAGACATTTGGACATAATTT
1 TAAGACCTCTGGGCATAATTT
10008059 TGATTCGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
21 3 0.08
22 31 0.84
23 3 0.08
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (22 bp):
TAAGACCTCTGGGCATAATTTC
Found at i:10008110 original size:37 final size:37
Alignment explanation
Indices: 10008069--10008170 Score: 150
Period size: 37 Copynumber: 2.8 Consensus size: 37
10008059 TGATTCGCAT
* *
10008069 TGTTGTCCCAATCGATTCTTTATTTTTCAACTTGCGG
1 TGTTGTCCCAATCAATTCTTTATTTCTCAACTTGCGG
* * *
10008106 TGTTGTCCTAATCAATTTTTTATTCCTCAACTTGCGG
1 TGTTGTCCCAATCAATTCTTTATTTCTCAACTTGCGG
*
10008143 TGTTGTCCCAGTCAATTCTTTATTTCTC
1 TGTTGTCCCAATCAATTCTTTATTTCTC
10008171 GGTTCACGGC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.17, C:0.23, G:0.14, T:0.47
Consensus pattern (37 bp):
TGTTGTCCCAATCAATTCTTTATTTCTCAACTTGCGG
Found at i:10008651 original size:30 final size:32
Alignment explanation
Indices: 10008591--10008651 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
10008581 AAAGCACTAC
* *
10008591 AGCCATCCCTACAGCCGCCCCCTACAACCATT
1 AGCCATACCTACAGCCGCACCCTACAACCATT
*
10008623 AGCCATACCTACAG-C-CACCCTACGACCAT
1 AGCCATACCTACAGCCGCACCCTACAACCAT
10008652 CACAGACTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 12 0.46
31 1 0.04
32 13 0.50
ACGTcount: A:0.28, C:0.48, G:0.10, T:0.15
Consensus pattern (32 bp):
AGCCATACCTACAGCCGCACCCTACAACCATT
Found at i:10008941 original size:11 final size:11
Alignment explanation
Indices: 10008927--10008965 Score: 55
Period size: 10 Copynumber: 3.7 Consensus size: 11
10008917 TAGAAAACAA
10008927 AAAAAAAATCC
1 AAAAAAAATCC
10008938 AAAAAAAATCC
1 AAAAAAAATCC
*
10008949 -ATAAAAA-CC
1 AAAAAAAATCC
10008958 AAAAAAAA
1 AAAAAAAA
10008966 ATAAAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.08
10 12 0.48
11 11 0.44
ACGTcount: A:0.77, C:0.15, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAATCC
Found at i:10009732 original size:3 final size:3
Alignment explanation
Indices: 10009726--10009766 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
10009716 ATGTTGTTCT
*
10009726 ATA ATA ACTA ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA A
1 ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10009767 AAGTTATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:10010079 original size:20 final size:20
Alignment explanation
Indices: 10010051--10010090 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
10010041 AAAATTCAAA
*
10010051 AAAATTAAAACCAAAACCCT
1 AAAACTAAAACCAAAACCCT
* *
10010071 AAAACTAAACCCTAAACCCT
1 AAAACTAAAACCAAAACCCT
10010091 CTAAACCCTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.30, G:0.00, T:0.15
Consensus pattern (20 bp):
AAAACTAAAACCAAAACCCT
Found at i:10010080 original size:13 final size:13
Alignment explanation
Indices: 10010064--10010117 Score: 54
Period size: 13 Copynumber: 3.9 Consensus size: 13
10010054 ATTAAAACCA
10010064 AAACCCTAAAACT
1 AAACCCTAAAACT
*
10010077 AAACCCTAAACCCTCT
1 AAACCCTAAA---ACT
*
10010093 AAACCCTAAGACT
1 AAACCCTAAAACT
*
10010106 AAGCCCTAAAAC
1 AAACCCTAAAAC
10010118 ACTCTAAATC
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
13 22 0.67
16 11 0.33
ACGTcount: A:0.46, C:0.35, G:0.04, T:0.15
Consensus pattern (13 bp):
AAACCCTAAAACT
Found at i:10010125 original size:30 final size:29
Alignment explanation
Indices: 10010064--10010253 Score: 121
Period size: 30 Copynumber: 6.4 Consensus size: 29
10010054 ATTAAAACCA
*
10010064 AAACCCTAAAACTAAACCCTAAACCCTCT
1 AAACCCTAAAACTAAACCCTAAACACTCT
* *
10010093 AAACCCTAAGACTAAGCCCTAAAACACTCT
1 AAACCCTAAAACTAAACCCT-AAACACTCT
* * * * *
10010123 AAATCCTAAAATTGAAACCTTAAACCCTCA
1 AAACCCTAAAACT-AAACCCTAAACACTCT
** * * *
10010153 AAACTTTAAAATTAGATCCTAAAACACTCT
1 AAACCCTAAAACTAAACCCT-AAACACTCT
* * * *
10010183 AAACCTTGAAATTGAAACCCTAAATC-CTCC
1 AAACCCTAAAACT-AAACCCTAAA-CACTCT
* * * * *
10010213 AAATCGTAAAACTAAGACCTTAAACCCTTT
1 AAACCCTAAAACTAA-ACCCTAAACACTCT
10010243 AAACCCTAAAA
1 AAACCCTAAAA
10010254 TCAAAAAACT
Statistics
Matches: 122, Mismatches: 32, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
29 25 0.20
30 86 0.70
31 11 0.09
ACGTcount: A:0.45, C:0.28, G:0.04, T:0.22
Consensus pattern (29 bp):
AAACCCTAAAACTAAACCCTAAACACTCT
Found at i:10010147 original size:60 final size:58
Alignment explanation
Indices: 10010068--10010254 Score: 169
Period size: 60 Copynumber: 3.1 Consensus size: 58
10010058 AAACCAAAAC
* * *
10010068 CCTAAAACT-AAACCCTAAACCCTCTAAACCCTAAGACTAAGCCCTAAAACACTCTAAA
1 CCTAAAATTGAAACCCTAAACCCTCAAAACCCTAA-ACTAAGACCTAAAACACTCTAAA
* ** * *
10010126 TCCTAAAATTGAAACCTTAAACCCTCAAAACTTTAAAATTAGATCCTAAAACACTCTAAA
1 -CCTAAAATTGAAACCCTAAACCCTCAAAACCCTAAACTAAGA-CCTAAAACACTCTAAA
* * * * * * * *
10010186 CCTTGAAATTGAAACCCTAAATCCTCCAAATCGTAAAACTAAGACCTTAAACCCTTTAAA
1 CC-TAAAATTGAAACCCTAAACCCTCAAAACCCT-AAACTAAGACCTAAAACACTCTAAA
10010246 CCCTAAAAT
1 -CCTAAAAT
10010255 CAAAAAACTA
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
59 14 0.14
60 79 0.77
61 9 0.09
ACGTcount: A:0.44, C:0.28, G:0.04, T:0.23
Consensus pattern (58 bp):
CCTAAAATTGAAACCCTAAACCCTCAAAACCCTAAACTAAGACCTAAAACACTCTAAA
Found at i:10010412 original size:28 final size:27
Alignment explanation
Indices: 10010381--10010450 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 27
10010371 CCCTCGACCT
*
10010381 CAAACTCTAAAATCAAAAACCTAAACCC
1 CAAAATCTAAAATCAAAAACCT-AACCC
*
10010409 CAAAATCTGAAACTC-AAAACTCTAACCC
1 CAAAATCT-AAAATCAAAAAC-CTAACCC
*
10010437 TAAAATCTAAAATC
1 CAAAATCTAAAATC
10010451 CCAAACCCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 5 0.14
28 24 0.67
29 7 0.19
ACGTcount: A:0.51, C:0.29, G:0.01, T:0.19
Consensus pattern (27 bp):
CAAAATCTAAAATCAAAAACCTAACCC
Found at i:10014460 original size:8 final size:8
Alignment explanation
Indices: 10014449--10014477 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
10014439 CAAACAATGA
10014449 AGTTGAAT
1 AGTTGAAT
10014457 AGTTGAAT
1 AGTTGAAT
10014465 AGTTGAAT
1 AGTTGAAT
10014473 AGTTG
1 AGTTG
10014478 TCTTGAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.28, T:0.38
Consensus pattern (8 bp):
AGTTGAAT
Found at i:10022983 original size:22 final size:22
Alignment explanation
Indices: 10022958--10023041 Score: 69
Period size: 22 Copynumber: 3.8 Consensus size: 22
10022948 AGTTATGACT
* **
10022958 GATTTGTTATTATGTTATCAAC
1 GATTTATTATTAAATTATCAAC
*
10022980 GATTTATTATTAAATTATCAAT
1 GATTTATTATTAAATTATCAAC
* * ** *
10023002 GATTTACTATTAAGTTAAGAAT
1 GATTTATTATTAAATTATCAAC
* *
10023024 GATTTACTACTAAATTAT
1 GATTTATTATTAAATTAT
10023042 TGATAATTTA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (22 bp):
GATTTATTATTAAATTATCAAC
Found at i:10023300 original size:22 final size:22
Alignment explanation
Indices: 10023273--10023355 Score: 78
Period size: 22 Copynumber: 3.7 Consensus size: 22
10023263 TAATAAATAG
10023273 CTATTAAATTATCAATTATATA
1 CTATTAAATTATCAATTATATA
10023295 CTATTAAATTATCAATTCA-ATTA
1 CTATTAAATTATCAATT-ATA-TA
* * ** * *
10023318 CTACTAAGTTATTTATGATTTA
1 CTATTAAATTATCAATTATATA
*
10023340 CTATTAATTTATCAAT
1 CTATTAAATTATCAAT
10023356 AAATTACAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
22 33 0.69
23 15 0.31
ACGTcount: A:0.40, C:0.11, G:0.02, T:0.47
Consensus pattern (22 bp):
CTATTAAATTATCAATTATATA
Found at i:10023362 original size:22 final size:22
Alignment explanation
Indices: 10023264--10023362 Score: 76
Period size: 22 Copynumber: 4.5 Consensus size: 22
10023254 CTAACTTTTT
10023264 AATAAA-TAGCTATTAAATTATC
1 AATAAATTA-CTATTAAATTATC
*
10023286 AAT-TATATACTATTAAATTATC
1 AATAAAT-TACTATTAAATTATC
* * * *
10023308 AATTCAATTACTACTAAGTTATT
1 AA-TAAATTACTATTAAATTATC
* * * *
10023331 TATGATTTACTATTAATTTATC
1 AATAAATTACTATTAAATTATC
10023353 AATAAATTAC
1 AATAAATTAC
10023363 AATATATAAG
Statistics
Matches: 59, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
21 1 0.02
22 40 0.68
23 16 0.27
24 2 0.03
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.43
Consensus pattern (22 bp):
AATAAATTACTATTAAATTATC
Found at i:10023656 original size:18 final size:18
Alignment explanation
Indices: 10023630--10023664 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10023620 TTATCATCAA
*
10023630 TTTATTACTAAGTTATAG
1 TTTACTACTAAGTTATAG
10023648 TTTACTACTAAGTTATA
1 TTTACTACTAAGTTATA
10023665 AATGATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.49
Consensus pattern (18 bp):
TTTACTACTAAGTTATAG
Found at i:10024215 original size:63 final size:62
Alignment explanation
Indices: 10024148--10024303 Score: 246
Period size: 60 Copynumber: 2.5 Consensus size: 62
10024138 TTTTGTACAG
10024148 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAAAAACCTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAAAAACC-TTTTTTGAAAATTTATTTTTAA
* *
10024211 GGAAAATTGATACTTTTAACTTTTCCTC--AAAAAAAATCTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAAAAACCTTTTTTGAAAATTTATTTTTAA
*
10024271 GGAAAATTGATACATTCAACTTTTTCC-CAAAAA
1 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAAA
10024304 TATTTTTTTT
Statistics
Matches: 86, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
60 41 0.48
61 15 0.17
62 3 0.03
63 27 0.31
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (62 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAAAAACCTTTTTTGAAAATTTATTTTTAA
Found at i:10024384 original size:35 final size:35
Alignment explanation
Indices: 10024331--10024400 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
10024321 CTTATCTAAA
*
10024331 GAAAAGAAAATAATAAAATAAA-ATACAATAAAAAT
1 GAAAAGAAAATAATAAAATAAATA-AAAATAAAAAT
*
10024366 GAAAATGAAAGTAA-AAAATAAATAAAAATAAAAAT
1 GAAAA-GAAAATAATAAAATAAATAAAAATAAAAAT
10024401 ATTAAACAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 23 0.74
36 8 0.26
ACGTcount: A:0.74, C:0.01, G:0.07, T:0.17
Consensus pattern (35 bp):
GAAAAGAAAATAATAAAATAAATAAAAATAAAAAT
Found at i:10024977 original size:16 final size:17
Alignment explanation
Indices: 10024958--10025022 Score: 71
Period size: 17 Copynumber: 3.9 Consensus size: 17
10024948 CAAAATAAAA
* *
10024958 AGATAAATATATTAA-T
1 AGATAAATAAAATAATT
10024974 AGATAAA-AAAATAATT
1 AGATAAATAAAATAATT
* *
10024990 AGATAAATAAAAGAAAT
1 AGATAAATAAAATAATT
10025007 AGATAAATAATAATAA
1 AGATAAATAA-AATAA
10025023 AAAATAAAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
15 5 0.12
16 15 0.37
17 17 0.41
18 4 0.10
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (17 bp):
AGATAAATAAAATAATT
Found at i:10024987 original size:32 final size:34
Alignment explanation
Indices: 10024949--10025030 Score: 89
Period size: 32 Copynumber: 2.5 Consensus size: 34
10024939 AAAATTAATC
* **
10024949 AAAATAAAAAGATAAAT-ATATTAATAGATAAA-
1 AAAATAAAAAGATAAATAAAAGAAATAGATAAAT
**
10024981 AAAATAATTAGATAAATAAAAGAAATAGATAAAT
1 AAAATAAAAAGATAAATAAAAGAAATAGATAAAT
10025015 AATAATAAAAA-ATAAA
1 AA-AATAAAAAGATAAA
10025031 AGAAGATAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 15 0.38
33 12 0.30
34 7 0.17
35 6 0.15
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (34 bp):
AAAATAAAAAGATAAATAAAAGAAATAGATAAAT
Found at i:10024998 original size:24 final size:24
Alignment explanation
Indices: 10024952--10025063 Score: 67
Period size: 24 Copynumber: 4.9 Consensus size: 24
10024942 ATTAATCAAA
* * *
10024952 ATAAAAAGATAAATATATTAATAG
1 ATAAAAAAATAAATAGATAAATAG
*
10024976 ATAAAAAAATAATTAGATAAAT--
1 ATAAAAAAATAAATAGATAAATAG
* * *
10024998 A-AAAGAAATAGATAAAT-AATA-
1 ATAAAAAAATAAATAGATAAATAG
*
10025019 AT-AAAAAATAAAAGAAGATAAATA-
1 ATAAAAAAAT-AAA-TAGATAAATAG
* *
10025043 ATAAAAATATTAATAGATAAA
1 ATAAAAAAATAAATAGATAAA
10025064 AAAAATATAT
Statistics
Matches: 67, Mismatches: 15, Indels: 13
0.71 0.16 0.14
Matches are distributed among these distances:
20 3 0.04
21 19 0.28
22 3 0.04
23 10 0.15
24 26 0.39
25 6 0.09
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (24 bp):
ATAAAAAAATAAATAGATAAATAG
Found at i:10025060 original size:67 final size:67
Alignment explanation
Indices: 10024971--10025097 Score: 154
Period size: 67 Copynumber: 1.9 Consensus size: 67
10024961 TAAATATATT
*
10024971 AATAGATAAAAAAATAATTAGATAAATAAAAGAAATAGATAAATAAT-AATA-AAAAATAAAAGA
1 AATAGATAAAAAAATAATTAGATAAA-AAAA-AAATA-ATAAATAATGAAAATAAAAATAAAAGA
10025034 AGATA
63 AGATA
* * *
10025039 AATA-ATAAAAATATTAA-TAGATAAAAAAAATATATTAAATAATGAAAATAAAAATAAAA
1 AATAGATAAAAA-AATAATTAGATAAAAAAAAAATAATAAATAATGAAAATAAAAATAAAA
10025098 ACCCATTGGG
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
64 8 0.15
65 7 0.13
66 14 0.27
67 15 0.29
68 8 0.15
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (67 bp):
AATAGATAAAAAAATAATTAGATAAAAAAAAAATAATAAATAATGAAAATAAAAATAAAAGAAGA
TA
Found at i:10025065 original size:17 final size:17
Alignment explanation
Indices: 10024966--10025066 Score: 68
Period size: 17 Copynumber: 6.1 Consensus size: 17
10024956 AAAGATAAAT
10024966 ATATTAATAGATAAAAA
1 ATATTAATAGATAAAAA
10024983 A-A-TAATTAGATAAATAA
1 ATATTAA-TAGATAAA-AA
** *
10025000 A-AGAAATAGATAAATA
1 ATATTAATAGATAAAAA
* * *
10025016 ATAATAAAAAATAAAAGA
1 ATATTAATAGATAAAA-A
* *
10025034 AGATAAATA-AT-AAAA
1 ATATTAATAGATAAAAA
10025049 ATATTAATAGATAAAAA
1 ATATTAATAGATAAAAA
10025066 A
1 A
10025067 AATATATTAA
Statistics
Matches: 64, Mismatches: 13, Indels: 14
0.70 0.14 0.15
Matches are distributed among these distances:
15 11 0.17
16 16 0.25
17 29 0.45
18 8 0.12
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (17 bp):
ATATTAATAGATAAAAA
Found at i:10025075 original size:21 final size:21
Alignment explanation
Indices: 10024962--10025076 Score: 89
Period size: 21 Copynumber: 5.5 Consensus size: 21
10024952 ATAAAAAGAT
10024962 AAATATATTAATAGAT-AAAA
1 AAATATATTAATAGATAAAAA
* *
10024982 AAATA-ATTAGATAAATAAAAG
1 AAATATATTA-ATAGATAAAAA
* *
10025003 AAATAGATAAATA-ATAATAAA
1 AAATATATTAATAGATAA-AAA
*
10025024 AAATA-A--AAGAAGATAAATAA
1 AAATATATTAA-TAGATAAA-AA
*
10025044 TAAAAATATTAATAGATAAAAA
1 -AAATATATTAATAGATAAAAA
10025066 AAATATATTAA
1 AAATATATTAA
10025077 ATAATGAAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
18 2 0.03
19 6 0.08
20 21 0.28
21 32 0.42
22 6 0.08
23 7 0.09
24 2 0.03
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (21 bp):
AAATATATTAATAGATAAAAA
Found at i:10025086 original size:19 final size:19
Alignment explanation
Indices: 10025036--10025088 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
10025026 ATAAAAGAAG
10025036 ATAAATAATAAAAATATTA
1 ATAAATAATAAAAATATTA
* *
10025055 ATAGATAAAAAAAATA-TA
1 ATAAATAATAAAAATATTA
* *
10025073 TTAAATAATGAAAATA
1 ATAAATAATAAAAATA
10025089 AAAATAAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (19 bp):
ATAAATAATAAAAATATTA
Found at i:10025086 original size:21 final size:20
Alignment explanation
Indices: 10024962--10025086 Score: 71
Period size: 20 Copynumber: 6.0 Consensus size: 20
10024952 ATAAAAAGAT
10024962 AAATATATT-AATAGATAAAA
1 AAATATATTAAATA-ATAAAA
*
10024982 AAATA-ATTAGATAAATAAAA
1 AAATATATTAAAT-AATAAAA
*
10025002 GAAATAGA-TAAATAATAATAAA
1 -AAATATATTAAATAAT-A-AAA
* ** *
10025024 AAATAAAAGAAGATAAATAATA
1 AAATATATTAA-AT-AATAAAA
10025046 AAA-ATATT-AATAGATAAAAA
1 AAATATATTAAATA-AT-AAAA
*
10025066 AAATATATTAAATAATGAAA
1 AAATATATTAAATAATAAAA
10025086 A
1 A
10025087 TAAAAATAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 26
0.69 0.08 0.22
Matches are distributed among these distances:
18 1 0.01
19 7 0.09
20 27 0.33
21 26 0.32
22 15 0.18
23 3 0.04
24 3 0.04
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (20 bp):
AAATATATTAAATAATAAAA
Found at i:10025294 original size:1 final size:1
Alignment explanation
Indices: 10025288--10025337 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
10025278 AATTTGACAC
* * * * *
10025288 TTTTTTTTTGTTTTTGTTTTTTTTTCTTTTTTTGTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
10025338 GTTAAAATTT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.00, C:0.02, G:0.08, T:0.90
Consensus pattern (1 bp):
T
Found at i:10025310 original size:17 final size:16
Alignment explanation
Indices: 10025288--10025340 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 16
10025278 AATTTGACAC
*
10025288 TTTTTTTTTGTTTTTG
1 TTTTTTTTTTTTTTTG
10025304 TTTTTTTTTCTTTTTTTG
1 -TTTTTTTT-TTTTTTTG
10025322 TTTTGTTTTTTTTTTTG
1 TTTT-TTTTTTTTTTTG
10025339 TT
1 TT
10025341 AAAATTTTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
17 22 0.67
18 11 0.33
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (16 bp):
TTTTTTTTTTTTTTTG
Found at i:10025336 original size:24 final size:24
Alignment explanation
Indices: 10025290--10025335 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 24
10025280 TTTGACACTT
10025290 TTTTTTTGTTTTTGTTTTTTTTTC
1 TTTTTTTGTTTTTGTTTTTTTTTC
10025314 TTTTTTTG-TTTTGTTTTTTTTT
1 TTTTTTTGTTTTTGTTTTTTTTT
10025336 TTGTTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (24 bp):
TTTTTTTGTTTTTGTTTTTTTTTC
Found at i:10025498 original size:41 final size:41
Alignment explanation
Indices: 10025356--10025654 Score: 316
Period size: 41 Copynumber: 7.1 Consensus size: 41
10025346 TTTGATCAAA
* * * * **
10025356 GCTCCTTTAAGCAGAGGCTTAACGACTTTGAGAAAATAAACAAA
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGA-AAAAT-AA-ATT
* **
10025400 GCTCCTCTAATCAGAGGCTCAACGACTTTTGAAAAATAAACG
1 GCTCCTCTAATCAGAGGCTCAACAAC-TTTGAAAAATAAATT
*
10025442 GCTCCTCTAATCAGAGGCTCAACAACTTT-AAAAAGTAAATG
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAA-TAAATT
*
10025483 GCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAATT
1 GCTCCTCTAATCAGAGGCTCAACAACTTT-GAAAAATAAATT
*
10025525 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAGTAAATT
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAATAAATT
* * * *
10025566 GCTCTTCTAAAT-AGAGGCACCACAACTTTGGAAAATAAATT
1 GCTCCTCT-AATCAGAGGCTCAACAACTTTGAAAAATAAATT
* * * *
10025607 GCTTCTCTAAACAGAGGCACCAC-ACTTTGAAAAAAATAAATT
1 GCTCCTCTAATCAGAGGCTCAACAACTTTG--AAAAATAAATT
10025649 GCTCCT
1 GCTCCT
10025655 TAACAATCAT
Statistics
Matches: 226, Mismatches: 21, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
40 13 0.06
41 96 0.42
42 77 0.34
43 7 0.03
44 28 0.12
45 5 0.02
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (41 bp):
GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAATAAATT
Found at i:10025501 original size:83 final size:83
Alignment explanation
Indices: 10025400--10025624 Score: 319
Period size: 83 Copynumber: 2.7 Consensus size: 83
10025390 AATAAACAAA
**
10025400 GCTCCTCTAATCAGAGGCTCAACGACTTTTGAAAAATAAACGGCTCCTCTAATCAGAGGCTCAAC
1 GCTCCTCTAATCAGAGGCTCAACGACTTTTGAAAAATAAATTGCTCCTCTAATCAGAGGCTCAAC
10025465 AACTTTAAAAAGTAAATG
66 AACTTTAAAAAGTAAATG
*
10025483 GCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAATTGCTCCTCTAATCAGAGGCTCAAC
1 GCTCCTCTAATCAGAGGCTCAACGACTTTTGAAAAATAAATTGCTCCTCTAATCAGAGGCTCAAC
* *
10025548 AACTTTGAAAAGTAAATT
66 AACTTTAAAAAGTAAATG
* * * * * * *
10025566 GCTCTTCTAAAT-AGAGGCACCACAAC-TTTGGAAAATAAATTGCTTCTCTAAACAGAGGC
1 GCTCCTCT-AATCAGAGGCTCAACGACTTTTGAAAAATAAATTGCTCCTCTAATCAGAGGC
10025625 ACCACACTTT
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
82 29 0.23
83 96 0.75
84 3 0.02
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.25
Consensus pattern (83 bp):
GCTCCTCTAATCAGAGGCTCAACGACTTTTGAAAAATAAATTGCTCCTCTAATCAGAGGCTCAAC
AACTTTAAAAAGTAAATG
Found at i:10025647 original size:83 final size:83
Alignment explanation
Indices: 10025356--10025654 Score: 311
Period size: 83 Copynumber: 3.6 Consensus size: 83
10025346 TTTGATCAAA
* * * * ** *
10025356 GCTCCTTTAAGCAGAGGCTTAACGACTTTGAGAAAA-TAAACAAAGCTCCTCTAATCAGAGGCTC
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGA-AAAAGT-AA-ATTGCTCCTCTAATCAGAGGCAC
* * **
10025420 AACGACTTTTGAAAAATAAACG
63 AACAAC-TTTGGAAAATAAATT
* *
10025442 GCTCCTCTAATCAGAGGCTCAACAACTTT-AAAAAGTAAATGGCTCCTCTAATCAGAGGCTCAAC
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAGTAAATTGCTCCTCTAATCAGAGGCACAAC
*
10025506 GACTTTGGAAAAATAAATT
66 AACTTTGG-AAAATAAATT
* *
10025525 GCTCCTCTAATCAGAGGCTCAACAACTTTG-AAAAGTAAATTGCTCTTCTAAAT-AGAGGCACCA
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAGTAAATTGCTCCTCT-AATCAGAGGCACAA
10025588 CAACTTTGGAAAATAAATT
65 CAACTTTGGAAAATAAATT
* * * * *
10025607 GCTTCTCTAAACAGAGGCACCAC-ACTTTGAAAAAAATAAATTGCTCCT
1 GCTCCTCTAATCAGAGGCTCAACAACTTTG-AAAAAGTAAATTGCTCCT
10025655 TAACAATCAT
Statistics
Matches: 187, Mismatches: 20, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
81 6 0.03
82 33 0.18
83 112 0.60
84 9 0.05
85 2 0.01
86 25 0.13
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (83 bp):
GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAGTAAATTGCTCCTCTAATCAGAGGCACAAC
AACTTTGGAAAATAAATT
Found at i:10027296 original size:8 final size:8
Alignment explanation
Indices: 10027283--10027320 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
10027273 TTTGAATTTT
10027283 TTTTTTCA
1 TTTTTTCA
10027291 TTTTTTCA
1 TTTTTTCA
*
10027299 TTTTCTCA
1 TTTTTTCA
10027307 TTTTTTC-
1 TTTTTTCA
10027314 TTTTTTC
1 TTTTTTC
10027321 TTTCTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 7 0.25
8 21 0.75
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTTCA
Found at i:10027302 original size:16 final size:15
Alignment explanation
Indices: 10027279--10027349 Score: 67
Period size: 16 Copynumber: 4.7 Consensus size: 15
10027269 TCAATTTGAA
10027279 TTTT-TTTTTTCATT
1 TTTTCTTTTTTCATT
*
10027293 TTTTCATTTTCTCATT
1 TTTTC-TTTTTTCATT
10027309 TTTTCTTTTTTC-TT
1 TTTTCTTTTTTCATT
**
10027323 TCTTT-TTTCCTCTATT
1 T-TTTCTTTTTTC-ATT
10027339 TTTTCTTTTTT
1 TTTTCTTTTTT
10027350 TTTTCTCATT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
14 12 0.27
15 12 0.27
16 21 0.47
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTCTTTTTTCATT
Found at i:10027340 original size:23 final size:21
Alignment explanation
Indices: 10027314--10027362 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 21
10027304 TCATTTTTTC
10027314 TTTTTTCTTTCTTTTTTCCTCTA
1 TTTTTTCTTT-TTTTTTCCTC-A
*
10027337 TTTTTTCTTTTTTTTTTCTCA
1 TTTTTTCTTTTTTTTTCCTCA
10027358 TTTTT
1 TTTTT
10027363 CATCCATTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 6 0.24
22 9 0.36
23 10 0.40
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTTCTTTTTTTTTCCTCA
Found at i:10027340 original size:30 final size:28
Alignment explanation
Indices: 10027299--10027355 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 28
10027289 CATTTTTTCA
10027299 TTTTCTCATTTTTTCTTTTTTCTTTCTT
1 TTTTCTCATTTTTTCTTTTTTCTTTCTT
*
10027327 TTTTCCTCTATTTTTTCTTTTTTTTTTCT
1 TTTT-CTC-ATTTTTTCTTTTTTCTTTCT
10027356 CATTTTTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 4 0.15
29 3 0.12
30 19 0.73
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.79
Consensus pattern (28 bp):
TTTTCTCATTTTTTCTTTTTTCTTTCTT
Found at i:10027361 original size:11 final size:10
Alignment explanation
Indices: 10027299--10027362 Score: 51
Period size: 11 Copynumber: 6.2 Consensus size: 10
10027289 CATTTTTTCA
*
10027299 TTTTCTCATT
1 TTTTCTCTTT
10027309 TTTTCT-TTT
1 TTTTCTCTTT
10027318 TTCTT-TCTTT
1 TT-TTCTCTTT
*
10027328 TTTCCTCTATT
1 TTTTCTCT-TT
*
10027339 TTTTCTTTTTT
1 TTTTC-TCTTT
10027350 TTTTCTCATTT
1 TTTTCTC-TTT
10027361 TT
1 TT
10027363 CATCCATTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
9 6 0.14
10 17 0.40
11 18 0.42
12 2 0.05
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTCTCTTT
Found at i:10030348 original size:41 final size:41
Alignment explanation
Indices: 10030303--10030385 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
10030293 ATAATGAAAA
*
10030303 TGATGCACAAAGCCAGACAATCAAAATGATTAGATAAACAT
1 TGATGCACAAAGCCAAACAATCAAAATGATTAGATAAACAT
* *
10030344 TGATGCATAAAGCCAAACAATTAAAATGATTAGATAAACAT
1 TGATGCACAAAGCCAAACAATCAAAATGATTAGATAAACAT
10030385 T
1 T
10030386 CTTCTTGTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.49, C:0.14, G:0.13, T:0.23
Consensus pattern (41 bp):
TGATGCACAAAGCCAAACAATCAAAATGATTAGATAAACAT
Found at i:10031725 original size:60 final size:59
Alignment explanation
Indices: 10031325--10031724 Score: 453
Period size: 60 Copynumber: 6.7 Consensus size: 59
10031315 TTGTACAGAA
* * * **
10031325 AAAATTAATACTTTCAACTTTTCCCC-AAAATA-TTTTTTAGAAACTTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTAATTTTAAGG
* * * * *
10031382 AAAATTGATACTTTCAACTTTTCCTCAATAAAAACCTTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCCCAA-AAATACTTTTTTTGAAAATTTAATTTTAAGG
* * *
10031442 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAACTTTAATTTTGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTAATTTTAAGG
** * * *
10031501 AAAATTGATACTTTCAACTTTTCCTAAAAAAAAAACCTTTTTTTAAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC--CCAAAAATA-CTTTTTTTGAAAATTTAATTTTAAGG
* * * **
10031563 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTTTGGAAACTTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATA-CTTTTTTT-GAAAATTTAATTTTAAGG
** * * * *
10031624 AAAATTGATACTTTCAACTTTTCCTAAAAAAAAACCTTTTTTGAAAATTTACTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCC-CCAAAAATACTTTTTTTGAAAATTTAATTTTAAGG
*
10031684 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTT
10031725 TTAGAAAGCT
Statistics
Matches: 282, Mismatches: 53, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
57 24 0.09
58 1 0.00
59 64 0.23
60 95 0.34
61 48 0.17
62 50 0.18
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGAAAATTTAATTTTAAGG
Found at i:10031725 original size:121 final size:119
Alignment explanation
Indices: 10031324--10031724 Score: 671
Period size: 121 Copynumber: 3.4 Consensus size: 119
10031314 TTTGTACAGA
* *
10031324 AAAAATTAATACTTTCAACTTTTCCCC-AAAATA-TTTTTTAGAAACTTTAATTTCGAGGAAAAT
1 AAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAACTTTAATTTCGAGGAAAAT
* *
10031387 TGATACTTTCAACTTTTCCTCAATAAAAACCTTTTTTGAAAATTTATTTTTAAG
66 TGATACTTTCAACTTTTCCTAAAAAAAAACCTTTTTTGAAAATTTATTTTTAAG
*
10031441 AAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAACTTTAATTTTGAGGAAAAT
1 AAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAACTTTAATTTCGAGGAAAAT
*
10031506 TGATACTTTCAACTTTTCCTAAAAAAAAAACCTTTTTTTAAAAATTTATTTTTAAG
66 TGATACTTTCAACTTTTCCT-AAAAAAAAACC-TTTTTTGAAAATTTATTTTTAAG
* *
10031562 GAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTTTGGAAACTTTAATTTCGAGGAAA
1 AAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTT-GAAACTTTAATTTCGAGGAAA
*
10031627 ATTGATACTTTCAACTTTTCCTAAAAAAAAACCTTTTTTGAAAATTTACTTTTAAG
64 ATTGATACTTTCAACTTTTCCTAAAAAAAAACCTTTTTTGAAAATTTATTTTTAAG
10031683 AAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 AAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
10031725 TTAGAAAGCT
Statistics
Matches: 265, Mismatches: 13, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
117 26 0.10
118 6 0.02
119 48 0.18
120 17 0.06
121 107 0.40
122 19 0.07
123 42 0.16
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (119 bp):
AAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAACTTTAATTTCGAGGAAAAT
TGATACTTTCAACTTTTCCTAAAAAAAAACCTTTTTTGAAAATTTATTTTTAAG
Found at i:10031754 original size:5 final size:5
Alignment explanation
Indices: 10031744--10031822 Score: 63
Period size: 5 Copynumber: 14.8 Consensus size: 5
10031734 TTATCTAAAG
*
10031744 AAAAT AAAAT --AAT AAAAT AAAAT ACAAT AAAAAT GAAAAT GAAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT -AAAAT
*
10031790 GAAAAT AAAAA ATAAAT AAAATT AAAAAT AAAA
1 -AAAAT AAAAT A-AAAT AAAA-T -AAAAT AAAA
10031823 ATATTTAAAC
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
3 3 0.05
5 29 0.46
6 27 0.43
7 4 0.06
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:10031800 original size:6 final size:6
Alignment explanation
Indices: 10031744--10031825 Score: 64
Period size: 6 Copynumber: 14.0 Consensus size: 6
10031734 TTATCTAAAG
* * * *
10031744 AAAAT- AAAATA ATAAA-A TAAAAT- ACAATA AAAATG AAAATG AAAATG
1 AAAATA AAAATA A-AAATA -AAAATA AAAATA AAAATA AAAATA AAAATA
* *
10031791 AAAATA AAAA-A TAAATA AAATTA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
10031826 TTTAAACAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
5 13 0.21
6 46 0.73
7 4 0.06
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:10031806 original size:29 final size:28
Alignment explanation
Indices: 10031744--10031822 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
10031734 TTATCTAAAG
* *
10031744 AAAATAAAATAATAAAATAAAATACAATA
1 AAAATAAAATTA-AAAATAAAATACAAAA
*
10031773 AAAATGAAAA-TGAAAATGAAAATA-AAAA
1 AAAAT-AAAATTAAAAAT-AAAATACAAAA
10031801 ATAAATAAAATTAAAAATAAAA
1 A-AAATAAAATTAAAAATAAAA
10031823 ATATTTAAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
28 17 0.40
29 21 0.50
30 4 0.10
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (28 bp):
AAAATAAAATTAAAAATAAAATACAAAA
Found at i:10031817 original size:23 final size:22
Alignment explanation
Indices: 10031744--10031823 Score: 83
Period size: 23 Copynumber: 3.5 Consensus size: 22
10031734 TTATCTAAAG
10031744 AAAATAAAATAATAAAATAAAAT
1 AAAATAAAA-AATAAAATAAAAT
*
10031767 ACAAT-AAAAATGAAAATGAAAAT
1 AAAATAAAAAAT-AAAAT-AAAAT
10031790 GAAAATAAAAAAT-AAATAAAATT
1 -AAAATAAAAAATAAAATAAAA-T
10031813 AAAAATAAAAA
1 -AAAATAAAAA
10031824 TATTTAAACA
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
21 3 0.06
22 12 0.24
23 24 0.49
24 4 0.08
25 6 0.12
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (22 bp):
AAAATAAAAAATAAAATAAAAT
Found at i:10031831 original size:16 final size:16
Alignment explanation
Indices: 10031749--10031821 Score: 62
Period size: 16 Copynumber: 4.5 Consensus size: 16
10031739 TAAAGAAAAT
10031749 AAAAT-AATAAAA-T-
1 AAAATAAATAAAATTA
* *
10031762 AAAATACAATAAAAATG
1 AAAATA-AATAAAATTA
*
10031779 AAAATGAAAATGAAAATAA
1 AAAAT--AAAT-AAAATTA
10031798 AAAATAAATAAAATTA
1 AAAATAAATAAAATTA
10031814 AAAATAAA
1 AAAATAAA
10031822 AATATTTAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
13 5 0.10
15 7 0.14
16 15 0.31
17 9 0.18
18 3 0.06
19 10 0.20
ACGTcount: A:0.75, C:0.01, G:0.04, T:0.19
Consensus pattern (16 bp):
AAAATAAATAAAATTA
Found at i:10032490 original size:41 final size:43
Alignment explanation
Indices: 10032385--10032501 Score: 121
Period size: 45 Copynumber: 2.7 Consensus size: 43
10032375 ATAAAAGGAT
* * **
10032385 AAATATATTAATAGATAACAAAAAAAATAATTAGATAAATAAAAG
1 AAATATATTAATAAATAA-AAAAATAA-AAGCAGATAAATAAAAG
* *
10032430 AAATAGATAAATAATAATAAAAAAATAAAAGCAGATAAATAAAA-
1 AAATATATTAAT-A-AATAAAAAAATAAAAGCAGATAAATAAAAG
10032474 AAA-ATATTAATAAATAAAAAAAATAAAA
1 AAATATATTAATAAAT-AAAAAAATAAAA
10032502 AAATATATAT
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
41 3 0.05
42 13 0.21
43 6 0.10
44 3 0.05
45 24 0.39
46 8 0.13
47 4 0.07
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (43 bp):
AAATATATTAATAAATAAAAAAATAAAAGCAGATAAATAAAAG
Found at i:10032497 original size:9 final size:9
Alignment explanation
Indices: 10032466--10032504 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
10032456 AAAAGCAGAT
10032466 AAATAAAAA
1 AAATAAAAA
* *
10032475 AAATATTAAT
1 AAATA-AAAA
10032485 AAATAAAAA
1 AAATAAAAA
10032494 AAATAAAAA
1 AAATAAAAA
10032503 AA
1 AA
10032505 TATATATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
9 18 0.72
10 7 0.28
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (9 bp):
AAATAAAAA
Found at i:10032671 original size:22 final size:22
Alignment explanation
Indices: 10032646--10032698 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
10032636 GGGTGTCTAC
*
10032646 AATTTACTACTAAATTATTGAT
1 AATTTACTACTAAATTATAGAT
**
10032668 AATTTACTGTTAAATTATAGAT
1 AATTTACTACTAAATTATAGAT
10032690 AATTTACTA
1 AATTTACTA
10032699 TGAATTTATC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.45
Consensus pattern (22 bp):
AATTTACTACTAAATTATAGAT
Found at i:10032707 original size:22 final size:22
Alignment explanation
Indices: 10032646--10032724 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 22
10032636 GGGTGTCTAC
*
10032646 AATTTACTACT-AAATTATTGAT
1 AATTTACTA-TGAAATTATAGAT
* *
10032668 AATTTACTGTTAAATTATAGAT
1 AATTTACTATGAAATTATAGAT
*
10032690 AATTTACTATGAATTTATCA-AT
1 AATTTACTATGAAATTAT-AGAT
* *
10032712 GATTTAATATGAA
1 AATTTACTATGAA
10032725 GTAGTTAATA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.02
22 46 0.96
23 1 0.02
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (22 bp):
AATTTACTATGAAATTATAGAT
Found at i:10032790 original size:22 final size:22
Alignment explanation
Indices: 10032743--10032879 Score: 71
Period size: 22 Copynumber: 6.2 Consensus size: 22
10032733 TAATTAACTA
* * *
10032743 ATTTAAAACTAAATTATTATTA
1 ATTTAAAACTAAATTATCAATG
* *
10032765 ATTTATAACTAAATTATCACTG
1 ATTTAAAACTAAATTATCAATG
* *
10032787 ATTTACAGA-TAAGTTATCAATG
1 ATTTA-AAACTAAATTATCAATG
* * * *
10032809 ATTTAATA-TGACATTATTAGTG
1 ATTTAAAACT-AAATTATCAATG
** * **
10032831 ATTTACTACTAAATTATTAACA
1 ATTTAAAACTAAATTATCAATG
** *
10032853 ATTTACTATTAAATTATCAATG
1 ATTTAAAACTAAATTATCAATG
10032875 ATTTA
1 ATTTA
10032880 CTATATACTG
Statistics
Matches: 90, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
21 3 0.03
22 85 0.94
23 2 0.02
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.43
Consensus pattern (22 bp):
ATTTAAAACTAAATTATCAATG
Found at i:10032880 original size:22 final size:22
Alignment explanation
Indices: 10032774--10033287 Score: 166
Period size: 22 Copynumber: 23.4 Consensus size: 22
10032764 AATTTATAAC
* *
10032774 TAAATTATCACTGATTTAC-AGA
1 TAAATTATCAATGATTTACTA-T
* *
10032796 TAAGTTATCAATGATTTAATAT
1 TAAATTATCAATGATTTACTAT
* * * * *
10032818 GACATTATTAGTGATTTACTAC
1 TAAATTATCAATGATTTACTAT
* **
10032840 TAAATTATTAACAATTTACTAT
1 TAAATTATCAATGATTTACTAT
10032862 TAAATTATCAATGATTTACTA-
1 TAAATTATCAATGATTTACTAT
* * * * *
10032883 TATACTGT-TATGCATTTATTAT
1 TAAATTATCAATG-ATTTACTAT
** *
10032905 TATGTTATCATTGATTTACTAT
1 TAAATTATCAATGATTTACTAT
* * * * * *
10032927 TGAGTT-TTAGTGATTAACTAC
1 TAAATTATCAATGATTTACTAT
* * * *
10032948 TAAATGATCATTGATTTATTAC
1 TAAATTATCAATGATTTACTAT
* ** * **
10032970 TAAGTTATTTATAATTTACTGC
1 TAAATTATCAATGATTTACTAT
* * * * *
10032992 TAAGTT-TACAATTTAATTGCCAT
1 TAAATTAT-CAA-TGATTTACTAT
* *
10033015 TAAACTA-AAATAGATTTACTAT
1 TAAATTATCAAT-GATTTACTAT
* ** * *
10033037 TAAGTTATCTGTAATTTACTAC
1 TAAATTATCAATGATTTACTAT
* * *
10033059 TAAATTTTTATTGATTTACTAT
1 TAAATTATCAATGATTTACTAT
* * * *
10033081 TAAATTTTCAATAATTAACTTT
1 TAAATTATCAATGATTTACTAT
* * * **
10033103 TAAGTTATCATTTATTTTTTAT
1 TAAATTATCAATGATTTACTAT
* *
10033125 TAAATTATCATTGATTTACTAC
1 TAAATTATCAATGATTTACTAT
* * *
10033147 T-ATTCTAT-TATGCATTTACAAT
1 TAAAT-TATCAATG-ATTTACTAT
**
10033169 TATGTTAT-AATTGATTTACTAT
1 TAAATTATCAA-TGATTTACTAT
* *
10033191 TAAGTTAT-TATGTATTTACTAT
1 TAAATTATCAATG-ATTTACTAT
* * * *
10033213 TATATTATTATTGATTTACTAC
1 TAAATTATCAATGATTTACTAT
* *
10033235 TAAGTTATCAATTATTTACTAT
1 TAAATTATCAATGATTTACTAT
* * *
10033257 TAAATTATTATTGATATACTAT
1 TAAATTATCAATGATTTACTAT
*
10033279 TAACTTATC
1 TAAATTATC
10033288 TCTAATTTAC
Statistics
Matches: 348, Mismatches: 128, Indels: 32
0.69 0.25 0.06
Matches are distributed among these distances:
20 3 0.01
21 34 0.10
22 293 0.84
23 18 0.05
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.48
Consensus pattern (22 bp):
TAAATTATCAATGATTTACTAT
Found at i:10033278 original size:66 final size:65
Alignment explanation
Indices: 10032807--10033280 Score: 251
Period size: 66 Copynumber: 7.2 Consensus size: 65
10032797 AAGTTATCAA
* * * * * * ** *
10032807 TGATTTAATATGACATTATTAGTGATTTACTACTAAATTATTAACAATTTACTATTAAATTATCA
1 TGATTTACTATTATATTATTA-TGATTTACTATTAAGTTATCAATTATTTACTATTAAATTATTA
*
10032872 A
65 T
* * * * * *
10032873 TGATTTACTA-TATACTGTTATGCATTTATTATTATGTTATC-ATTGATTTACTATTGAGTT-TT
1 TGATTTACTATTATATTATTATG-ATTTACTATTAAGTTATCAATT-ATTTACTATTAAATTATT
*
10032935 AG
64 AT
* * * * * * * ** * ** * **
10032937 TGATTAACTACTAAATGATCATTGATTTATTACTAAGTTATTTATAATTTACTGCTAAGTTTACA
1 TGATTTACTATTATATTATTA-TGATTTACTATTAAGTTATCAATTATTTACTATTAA-ATTATT
10033002 AT
64 AT
* * * * * * ** ** * * *
10033004 TTAATTGCCATTAAACTAAAATAGATTTACTATTAAGTTATCTGTAATTTACTACTAAATTTTTA
1 TGATTTACTATTATATTATTAT-GATTTACTATTAAGTTATCAATTATTTACTATTAAATTATTA
10033069 T
65 T
* * * * * ** *
10033070 TGATTTACTATTAAATT-TTCAATAATTAACTTTTAAGTTATCATTTATTTTTTATTAAATTATC
1 TGATTTACTATTATATTATT--ATGATTTACTATTAAGTTATCAATTATTTACTATTAAATTATT
10033134 AT
64 AT
* * * *
10033136 TGATTTACTACTAT-TCTATTATGCATTTACAATTATGTTAT-AATTGATTTACTATTAAGTTAT
1 TGATTTACTATTATAT-TATTATG-ATTTACTATTAAGTTATCAATT-ATTTACTATTAAATTAT
10033199 TA-
63 TAT
*
10033201 TGTATTTACTATTATATTATTATTGATTTACTACTAAGTTATCAATTATTTACTATTAAATTATT
1 TG-ATTTACTATTATATTATTA-TGATTTACTATTAAGTTATCAATTATTTACTATTAAATTATT
10033266 AT
64 AT
*
10033268 TGATATACTATTA
1 TGATTTACTATTA
10033281 ACTTATCTCT
Statistics
Matches: 301, Mismatches: 88, Indels: 38
0.70 0.21 0.09
Matches are distributed among these distances:
64 14 0.05
65 69 0.23
66 163 0.54
67 55 0.18
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (65 bp):
TGATTTACTATTATATTATTATGATTTACTATTAAGTTATCAATTATTTACTATTAAATTATTAT
Found at i:10033296 original size:44 final size:44
Alignment explanation
Indices: 10033028--10033297 Score: 185
Period size: 44 Copynumber: 6.1 Consensus size: 44
10033018 ACTAAAATAG
* * * * * *
10033028 ATTTACTATTAAGTTATCT-GTAATTTACTACTAAATT-TTTATT
1 ATTTACTATTAAATTAT-TATTGATTTACTATTAAGTTATCTATT
* * * *
10033071 GATTTACTATTAAATT-TTCAATAATTAACTTTTAAGTTATC-ATTT
1 -ATTTACTATTAAATTATT-ATTGATTTACTATTAAGTTATCTA-TT
** * * * *
10033116 ATTTTTTATTAAATTATCATTGATTTACTACT-ATTCTAT-TATGC
1 ATTTACTATTAAATTATTATTGATTTACTATTAAGT-TATCTAT-T
* ** *
10033160 ATTTACAATTATGTTATAATTGATTTACTATTAAGTTAT-TATGT
1 ATTTACTATTAAATTATTATTGATTTACTATTAAGTTATCTAT-T
* * *
10033204 ATTTACTATTATATTATTATTGATTTACTACTAAGTTATCAATT
1 ATTTACTATTAAATTATTATTGATTTACTATTAAGTTATCTATT
* * * *
10033248 ATTTACTATTAAATTATTATTGATATACTATTAACTTATCTCTA
1 ATTTACTATTAAATTATTATTGATTTACTATTAAGTTATCTATT
10033292 ATTTAC
1 ATTTAC
10033298 GATACTAAAT
Statistics
Matches: 178, Mismatches: 38, Indels: 20
0.75 0.16 0.08
Matches are distributed among these distances:
42 1 0.01
43 4 0.02
44 165 0.93
45 8 0.04
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52
Consensus pattern (44 bp):
ATTTACTATTAAATTATTATTGATTTACTATTAAGTTATCTATT
Found at i:10033296 original size:66 final size:64
Alignment explanation
Indices: 10033028--10033429 Score: 238
Period size: 66 Copynumber: 6.0 Consensus size: 64
10033018 ACTAAAATAG
** * * *
10033028 ATTTACTATTAAGTTATCTGTAATTTACTACTAAATTTTTATTGATTTACTATTAAATT-TTCAA
1 ATTTACTATTAAGTTATCAATTATTTACTATTAAATTATTATTGATTTACTATT-AATTATT--A
10033092 TA
63 TA
* * * ** * * *
10033094 ATTAACTTTTAAGTTATCATTTATTTTTTATTAAATTATCATTGATTTACTACTATTCTATTATG
1 ATTTACTATTAAGTTATCAATTATTTACTATTAAATTATTATTGATTTACTATTAAT-TATTAT-
*
10033159 C
64 A
* * *
10033160 ATTTACAATTATGTTAT-AATTGATTTACTATTAAGTTATTA-TGTATTTACTATTATATTATTA
1 ATTTACTATTAAGTTATCAATT-ATTTACTATTAAATTATTATTG-ATTTACTATTA-ATTATTA
*
10033223 TTG
63 -TA
* * *
10033226 ATTTACTACTAAGTTATCAATTATTTACTATTAAATTATTATTGATATACTATTAACTTATCTCT
1 ATTTACTATTAAGTTATCAATTATTTACTATTAAATTATTATTGATTTACTATTAA-TTAT-TAT
10033291 A
64 A
* * * * *
10033292 ATTTACGATACTAAATTATCACTGATTAATGATTACTATTAAGTTA-TATTGATTTATTTTTAAT
1 ATTTAC--TATTAAGTTATCA---ATT-AT--TTACTATTAAATTATTATTGATTTACTATTAA-
10033356 TCTCAATTATTA
57 T-T--ATTA-TA
* * * * * * *
10033368 A-TTACTACTAAGTTCTAAATTATTTACTAATAAATTATCATATAATTTATTATTAAGTTATT
1 ATTTACTATTAAGTTATCAATTATTTACTATTAAATTATTAT-TGATTTACTATTAA-TTATT
10033430 TACGATTTAC
Statistics
Matches: 263, Mismatches: 48, Indels: 50
0.73 0.13 0.14
Matches are distributed among these distances:
65 10 0.04
66 143 0.54
67 23 0.09
68 15 0.06
69 15 0.06
70 3 0.01
71 3 0.01
72 2 0.01
73 25 0.10
74 14 0.05
75 5 0.02
76 5 0.02
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (64 bp):
ATTTACTATTAAGTTATCAATTATTTACTATTAAATTATTATTGATTTACTATTAATTATTATA
Found at i:10033765 original size:22 final size:22
Alignment explanation
Indices: 10033740--10033843 Score: 113
Period size: 22 Copynumber: 4.8 Consensus size: 22
10033730 ACTAAATCTT
*
10033740 ATTTACTATTAAATTATTATTA
1 ATTTACTATTAAATTATCATTA
* *
10033762 ATTTACTATTAAGTTATCATTG
1 ATTTACTATTAAATTATCATTA
*
10033784 ATTTACTATTAAGTTATCACTT-
1 ATTTACTATTAAATTATCA-TTA
* *
10033806 ATTT-TTATTAAATTATCCTTA
1 ATTTACTATTAAATTATCATTA
* *
10033827 ATTTACTACTATATTAT
1 ATTTACTATTAAATTAT
10033844 TATGTATCTA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
20 2 0.03
21 15 0.21
22 51 0.73
23 2 0.03
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (22 bp):
ATTTACTATTAAATTATCATTA
Found at i:10033930 original size:22 final size:22
Alignment explanation
Indices: 10033870--10033930 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
10033860 TGTGTAAATA
*
10033870 ATTTACTATTAAGTTATTTGTT
1 ATTTACTATTATGTTATTTGTT
* * *
10033892 ATTTACAACTATATTATTCTG-T
1 ATTTACTATTATGTTATT-TGTT
*
10033914 ATTTATTATTATGTTAT
1 ATTTACTATTATGTTAT
10033931 CACTGGCATA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
ATTTACTATTATGTTATTTGTT
Found at i:10033974 original size:22 final size:22
Alignment explanation
Indices: 10033949--10034006 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
10033939 TACAACTATC
*
10033949 TTATCAATTATTTACTATTAAA
1 TTATCAATTATTTACAATTAAA
* *
10033971 TTATTATTTATTTACAATTAAA
1 TTATCAATTATTTACAATTAAA
* *
10033993 TTATCCATAATTTA
1 TTATCAATTATTTA
10034007 ATATATATTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.52
Consensus pattern (22 bp):
TTATCAATTATTTACAATTAAA
Found at i:10034040 original size:22 final size:22
Alignment explanation
Indices: 10033989--10034091 Score: 70
Period size: 22 Copynumber: 4.8 Consensus size: 22
10033979 TATTTACAAT
*
10033989 TAAA-TTATCCATAATTTAATA
1 TAAAGTTATCAATAATTTAATA
* * *
10034010 TATATTTATCATTAATTTAATA
1 TAAAGTTATCAATAATTTAATA
* * ** *
10034032 TAAAGTTATTACT-ATTTTTTC
1 TAAAGTTATCAATAATTTAATA
*
10034053 T-AAGTTATCAGTAATTTACA-A
1 TAAAGTTATCAATAATTTA-ATA
*
10034074 TAAAATTATCAATAATTT
1 TAAAGTTATCAATAATTT
10034092 GCCACTATAT
Statistics
Matches: 61, Mismatches: 17, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
20 9 0.15
21 14 0.23
22 38 0.62
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.48
Consensus pattern (22 bp):
TAAAGTTATCAATAATTTAATA
Found at i:10034259 original size:20 final size:19
Alignment explanation
Indices: 10034234--10034283 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
10034224 TTTTTAATGT
10034234 TAAAAAGTAAAAAAAAATCA
1 TAAAAAGTAAAAAAAAAT-A
* * *
10034254 TAAAAAATAATATAAAATA
1 TAAAAAGTAAAAAAAAATA
10034273 TAAAAAAGTAA
1 T-AAAAAGTAA
10034284 GAATTTTAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (19 bp):
TAAAAAGTAAAAAAAAATA
Found at i:10036168 original size:23 final size:24
Alignment explanation
Indices: 10036141--10036192 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
10036131 CTCTTTTTGA
10036141 ATAATTTT-T-TGATACTTTAATTT
1 ATAATTTTGTATGA-ACTTTAATTT
10036164 ATAATTTTGTATGAACTTTAATTT
1 ATAATTTTGTATGAACTTTAATTT
10036188 -TAATT
1 ATAATT
10036193 AATCTAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 13 0.48
24 11 0.41
25 3 0.11
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.58
Consensus pattern (24 bp):
ATAATTTTGTATGAACTTTAATTT
Found at i:10036886 original size:152 final size:152
Alignment explanation
Indices: 10036637--10036942 Score: 402
Period size: 152 Copynumber: 2.0 Consensus size: 152
10036627 ATTTTTAATT
* * *
10036637 GATTTAAATTTAAATAATTAATGAATAAAAAACTATATATTTAATGTCAAATAATCTTTATTAAA
1 GATTTAAATTTAAATAACTAATGAATAAAAAACTATATATTTAATGACAAATAATCTTAATTAAA
* * * * *
10036702 TAAATAAAAAATGCTAGAAATTGAAATATAAATTTGTTATGTTTTAAAATTTATAAGGGTATTTA
66 TAAATAAAAAATGCTAAAAATTGAAAGATAAATTTGTTATCTCTTAAAATTCAT-AGGGTATTTA
*
10036767 TGTTATTCATTTTTAACACTTTTA
130 TGTTATTCA-CTTTAACACTTTTA
* *
10036791 GATTTAAATTTAAATAACTAACT-ACT-AAAAGCTATATATTTAATGACAAATAAT-TTAATTAA
1 GATTTAAATTTAAATAACTAA-TGAATAAAAAACTATATATTTAATGACAAATAATCTTAATTAA
* * * * *
10036853 ATAAATAAATAATGTTAAAAATTTAAAGGTAAATTTGTTATCTCTTAAAATTCATATGGTATTTA
65 ATAAATAAAAAATGCTAAAAATTGAAAGATAAATTTGTTATCTCTTAAAATTCATAGGGTATTTA
* *
10036918 TGTTGTTCACTTTAATACTTTTA
130 TGTTATTCACTTTAACACTTTTA
10036941 GA
1 GA
10036943 GTTCACACTT
Statistics
Matches: 133, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
150 14 0.11
151 17 0.13
152 53 0.40
153 26 0.20
154 22 0.17
155 1 0.01
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (152 bp):
GATTTAAATTTAAATAACTAATGAATAAAAAACTATATATTTAATGACAAATAATCTTAATTAAA
TAAATAAAAAATGCTAAAAATTGAAAGATAAATTTGTTATCTCTTAAAATTCATAGGGTATTTAT
GTTATTCACTTTAACACTTTTA
Found at i:10036985 original size:2 final size:2
Alignment explanation
Indices: 10036978--10037010 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
10036968 TAGATAGCTG
10036978 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10037011 ATGATTGAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10037259 original size:2 final size:2
Alignment explanation
Indices: 10037252--10037287 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
10037242 GAGCAAACTA
10037252 AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10037288 CACTCACATA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:10040744 original size:6 final size:6
Alignment explanation
Indices: 10040731--10040768 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
10040721 CCTTAAGAAG
10040731 AAGA-A AAGAGA AAGAGA AA-AGAA AAGAGA AAGAGA AAG
1 AAGAGA AAGAGA AAGAGA AAGAG-A AAGAGA AAGAGA AAG
10040769 GGCAAATCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
5 6 0.20
6 22 0.73
7 2 0.07
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (6 bp):
AAGAGA
Found at i:10040748 original size:13 final size:13
Alignment explanation
Indices: 10040732--10040768 Score: 60
Period size: 12 Copynumber: 3.0 Consensus size: 13
10040722 CTTAAGAAGA
10040732 AGAAAAGAGAAAG
1 AGAAAAGAGAAAG
10040745 AGAAAAGA-AAAG
1 AGAAAAGAGAAAG
10040757 AG-AAAGAGAAAG
1 AGAAAAGAGAAAG
10040769 GGCAAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.22
12 10 0.43
13 8 0.35
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (13 bp):
AGAAAAGAGAAAG
Found at i:10040754 original size:18 final size:18
Alignment explanation
Indices: 10040726--10040767 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
10040716 GAAACCCTTA
10040726 AGAAGAAGAAAAGAGAAAG
1 AGAA-AAGAAAAGAGAAAG
10040745 AGAAAAGAAAAGAGAAAG
1 AGAAAAGAAAAGAGAAAG
10040763 AGAAA
1 AGAAA
10040768 GGGCAAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
AGAAAAGAAAAGAGAAAG
Found at i:10041537 original size:19 final size:20
Alignment explanation
Indices: 10041501--10041538 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10041491 TTAGTTATAT
*
10041501 TATTTTTACTTATTTTAATA
1 TATTTTTACTTATGTTAATA
10041521 TATTTTTAC-TATGTTAAT
1 TATTTTTACTTATGTTAAT
10041539 TCTACAGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (20 bp):
TATTTTTACTTATGTTAATA
Found at i:10062944 original size:22 final size:22
Alignment explanation
Indices: 10062919--10063236 Score: 132
Period size: 22 Copynumber: 14.9 Consensus size: 22
10062909 AATATATAAC
10062919 AATTAATGATAACTGT-ATAGTA
1 AATTAATGATAACT-TAATAGTA
*
10062941 AATT-ATGGATAACTTAATAGCA
1 AATTAAT-GATAACTTAATAGTA
* *
10062963 AAATAATAATAACTTAATAGTA
1 AATTAATGATAACTTAATAGTA
* * * *
10062985 AATAAATAATAATTTAGTAGTA
1 AATTAATGATAACTTAATAGTA
10063007 AA-TAATTGATAA---AATAGT-
1 AATTAA-TGATAACTTAATAGTA
* * *
10063025 --GT-ATGATAACATAATAATA
1 AATTAATGATAACTTAATAGTA
* **
10063044 AA-TACATAATAAAATAATAAG-A
1 AATTA-ATGATAACTTAAT-AGTA
**
10063066 AA-TAACAAATAACTTAACT-GTA
1 AATTAA-TGATAACTTAA-TAGTA
* * * * *
10063088 AATCATTTAT-ACATAATTGTA
1 AATTAATGATAACTTAATAGTA
* * *
10063109 AATGT-AT-A-ACACATATTGGTA
1 AAT-TAATGATA-ACTTAATAGTA
* **
10063130 AATTAAAGATAACTTAATAAAA
1 AATTAATGATAACTTAATAGTA
* * * *
10063152 AATAAATAATAACTTAGTAGTT
1 AATTAATGATAACTTAATAGTA
* *
10063174 AATTATTGATAACTTAATAATA
1 AATTAATGATAACTTAATAGTA
*
10063196 AATTAATGATAACTTAATAGCA
1 AATTAATGATAACTTAATAGTA
10063218 AATTAATGATAACTTAATA
1 AATTAATGATAACTTAATA
10063237 AATAAGATTC
Statistics
Matches: 222, Mismatches: 49, Indels: 50
0.69 0.15 0.16
Matches are distributed among these distances:
15 6 0.03
16 1 0.00
17 1 0.00
18 5 0.02
19 5 0.02
20 4 0.02
21 32 0.14
22 162 0.73
23 6 0.03
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (22 bp):
AATTAATGATAACTTAATAGTA
Found at i:10063178 original size:44 final size:44
Alignment explanation
Indices: 10063129--10063238 Score: 148
Period size: 44 Copynumber: 2.5 Consensus size: 44
10063119 ACATATTGGT
* * *
10063129 AAATTAAAGATAACTTAATAAAAAATAAATAATAACTTAGTAGT
1 AAATTAATGATAACTTAATAAAAAATAAATAATAACTTAATAGC
* * * * *
10063173 TAATTATTGATAACTTAATAATAAATTAATGATAACTTAATAGC
1 AAATTAATGATAACTTAATAAAAAATAAATAATAACTTAATAGC
10063217 AAATTAATGATAACTTAATAAA
1 AAATTAATGATAACTTAATAAA
10063239 TAAGATTCAA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (44 bp):
AAATTAATGATAACTTAATAAAAAATAAATAATAACTTAATAGC
Found at i:10063201 original size:11 final size:11
Alignment explanation
Indices: 10063128--10063237 Score: 60
Period size: 11 Copynumber: 10.0 Consensus size: 11
10063118 CACATATTGG
10063128 TAAATTAA-AGA
1 TAAATTAATA-A
*
10063139 TAACTTAATAA
1 TAAATTAATAA
* *
10063150 AAAATAAATAA
1 TAAATTAATAA
* * *
10063161 TAACTTAGTAG
1 TAAATTAATAA
* * *
10063172 TTAATTATTGA
1 TAAATTAATAA
*
10063183 TAACTTAATAA
1 TAAATTAATAA
*
10063194 TAAATTAATGA
1 TAAATTAATAA
* *
10063205 TAACTTAATAG
1 TAAATTAATAA
* *
10063216 CAAATTAATGA
1 TAAATTAATAA
*
10063227 TAACTTAATAA
1 TAAATTAATAA
10063238 ATAAGATTCA
Statistics
Matches: 68, Mismatches: 30, Indels: 2
0.68 0.30 0.02
Matches are distributed among these distances:
11 67 0.99
12 1 0.01
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (11 bp):
TAAATTAATAA
Found at i:10063759 original size:22 final size:21
Alignment explanation
Indices: 10063734--10063785 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
10063724 TCTAATTTAG
10063734 TAGTAAATTAGTAATAA-TATAA
1 TAGTAAATTA-TAATAACT-TAA
*
10063756 TAGTCAAAGTATAATAACTTAA
1 TAGT-AAATTATAATAACTTAA
*
10063778 TAATAAAT
1 TAGTAAAT
10063786 CAATTATAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 3 0.12
22 16 0.64
23 6 0.24
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.35
Consensus pattern (21 bp):
TAGTAAATTATAATAACTTAA
Found at i:10063806 original size:22 final size:22
Alignment explanation
Indices: 10063791--10063839 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
10063781 TAAATCAATT
10063791 ATAACATAGTTGTAAATGCATA
1 ATAACATAGTTGTAAATGCATA
10063813 ATAACATAGTTGTAAATGCATA
1 ATAACATAGTTGTAAATGCATA
10063835 ATAAC
1 ATAAC
10063840 TTCATAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (22 bp):
ATAACATAGTTGTAAATGCATA
Found at i:10063912 original size:22 final size:22
Alignment explanation
Indices: 10063769--10063913 Score: 72
Period size: 22 Copynumber: 6.8 Consensus size: 22
10063759 TCAAAGTATA
* * *
10063769 ATAACTTAATAATAAATCAATT
1 ATAACTTAGTAGTAAATCAATG
* * *
10063791 ATAACATAGTTGTAAATGC-ATA
1 ATAACTTAGTAGTAAAT-CAATG
* * *
10063813 ATAACATAGTTGTAAATGC-ATA
1 ATAACTTAGTAGTAAAT-CAATG
10063835 ATAACTTCA-TA--AAA--AATG
1 ATAACTT-AGTAGTAAATCAATG
* * *
10063853 ATAACTTAATAGTTAATCATTG
1 ATAACTTAGTAGTAAATCAATG
*
10063875 ATAATTTAGT-GATAAATCAATG
1 ATAACTTAGTAG-TAAATCAATG
*
10063897 AAAACTTAGTAGTAAAT
1 ATAACTTAGTAGTAAAT
10063914 TAGTGATAGC
Statistics
Matches: 97, Mismatches: 16, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
17 1 0.01
18 11 0.11
20 5 0.05
21 1 0.01
22 76 0.78
23 3 0.03
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.34
Consensus pattern (22 bp):
ATAACTTAGTAGTAAATCAATG
Found at i:10064184 original size:22 final size:22
Alignment explanation
Indices: 10064115--10064199 Score: 71
Period size: 22 Copynumber: 3.9 Consensus size: 22
10064105 AGTAGCTTAT
* *
10064115 TGATAACTTAGTAGTAAATTAC
1 TGATAACTTAATAGTAAATCAC
* * * *
10064137 TAATAACGTAATAGTAAAACAT
1 TGATAACTTAATAGTAAATCAC
* * *
10064159 TGATAACTTAGTTGTAAATCAG
1 TGATAACTTAATAGTAAATCAC
* *
10064181 TGATAATTTAATTGTAAAT
1 TGATAACTTAATAGTAAAT
10064200 TAGTTAATTA
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.36
Consensus pattern (22 bp):
TGATAACTTAATAGTAAATCAC
Found at i:10064225 original size:22 final size:22
Alignment explanation
Indices: 10064200--10064306 Score: 133
Period size: 22 Copynumber: 4.9 Consensus size: 22
10064190 AATTGTAAAT
*
10064200 TAGTTAATTATTAATAACTTTA
1 TAGTAAATTATTAATAACTTTA
*
10064222 TAGTAAATCATTAATAACTTTA
1 TAGTAAATTATTAATAACTTTA
* * *
10064244 TAGTAAATCAATAATAACATTA
1 TAGTAAATTATTAATAACTTTA
* *
10064266 TAATAAATTATTAATAACTTAA
1 TAGTAAATTATTAATAACTTTA
* *
10064288 TATTAAATTATCAATAACT
1 TAGTAAATTATTAATAACT
10064307 GAGTAATAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 74 1.00
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.41
Consensus pattern (22 bp):
TAGTAAATTATTAATAACTTTA
Found at i:10064259 original size:44 final size:43
Alignment explanation
Indices: 10064211--10064341 Score: 140
Period size: 44 Copynumber: 3.0 Consensus size: 43
10064201 AGTTAATTAT
*
10064211 TAATAACTTTATAGTAAATCATTAATAACTTTATAGTAAATCAA
1 TAATAAC-TTATAATAAATCATTAATAACTTTATAGTAAATCAA
* * * *
10064255 TAATAACATTATAATAAATTATTAATAACTTAATATTAAAT-TA
1 TAATAAC-TTATAATAAATCATTAATAACTTTATAGTAAATCAA
* *
10064298 TCAATAACTGAGTAATAAATCATTTATAAC-TTAGTAGTAAATCA
1 T-AATAACTTA-TAATAAATCATTAATAACTTTA-TAGTAAATCA
10064342 TCTATAAGTT
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
43 6 0.08
44 65 0.92
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (43 bp):
TAATAACTTATAATAAATCATTAATAACTTTATAGTAAATCAA
Found at i:10064339 original size:66 final size:66
Alignment explanation
Indices: 10064200--10064339 Score: 158
Period size: 66 Copynumber: 2.1 Consensus size: 66
10064190 AATTGTAAAT
* * * * *
10064200 TAGTTAATTATTAATAACTTTATAGTAAATCATTAATAACTTTATAGTAAATCAATAATAACATT
1 TAGTAAATTATTAATAACTTAATAGTAAATCATCAATAACTTGATAATAAATCAATAATAACATT
10064265 A
66 A
* * * * *
10064266 TAATAAATTATTAATAACTTAATATTAAATTATCAATAAC-TGAGTAATAAATCATTTATAAC-T
1 TAGTAAATTATTAATAACTTAATAGTAAATCATCAATAACTTGA-TAATAAATCAATAATAACAT
10064329 TA
65 TA
10064331 GTAGTAAAT
1 -TAGTAAAT
10064340 CATCTATAAG
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
65 5 0.08
66 56 0.92
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (66 bp):
TAGTAAATTATTAATAACTTAATAGTAAATCATCAATAACTTGATAATAAATCAATAATAACATT
A
Found at i:10064353 original size:22 final size:21
Alignment explanation
Indices: 10064213--10064384 Score: 109
Period size: 22 Copynumber: 7.9 Consensus size: 21
10064203 TTAATTATTA
10064213 ATAACTTTA-TAGTAAATCATT
1 ATAAC-TTAGTAGTAAATCATT
*
10064234 AATAACTTTA-TAGTAAATCAATA
1 -ATAAC-TTAGTAGTAAATC-ATT
* *
10064257 ATAACATTA-TAATAAATTATT
1 ATAAC-TTAGTAGTAAATCATT
* * * *
10064278 AATAACTTAATATTAAATTATCA
1 -ATAACTTAGTAGTAAATCAT-T
* *
10064301 ATAACTGAGTAATAAATCATTT
1 ATAACTTAGTAGTAAATCA-TT
10064323 ATAACTTAGTAGTAAATCATCT
1 ATAACTTAGTAGTAAATCAT-T
* * *
10064345 ATAAGTTAGT-GATAGATCATG
1 ATAACTTAGTAG-TAAATCATT
*
10064366 ATAATTTAGTAGTAAATCA
1 ATAACTTAGTAGTAAATCA
10064385 GTGATAAGAT
Statistics
Matches: 123, Mismatches: 19, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
21 22 0.18
22 98 0.80
23 3 0.02
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.38
Consensus pattern (21 bp):
ATAACTTAGTAGTAAATCATT
Found at i:10064820 original size:22 final size:21
Alignment explanation
Indices: 10064759--10064838 Score: 63
Period size: 22 Copynumber: 3.8 Consensus size: 21
10064749 AATATAATAG
* *
10064759 TAAATCACTAA-ATTTAGCAA
1 TAAATCACTAATAATTAGTAA
10064779 TAAATCACTAATAATGTAGTAA
1 TAAATCACTAATAAT-TAGTAA
* * *
10064801 TAAGTCACTTATAACTTAGTTA
1 TAAATCACTAATAA-TTAGTAA
* * *
10064823 TATATCAATGATAATT
1 TAAATCACTAATAATT
10064839 TTGTGTAGTA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
20 11 0.23
21 4 0.08
22 32 0.67
23 1 0.02
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (21 bp):
TAAATCACTAATAATTAGTAA
Found at i:10064872 original size:22 final size:21
Alignment explanation
Indices: 10064844--10064970 Score: 94
Period size: 22 Copynumber: 5.8 Consensus size: 21
10064834 TAATTTTGTG
*
10064844 TAGTAAATCATCGATAACTTCA
1 TAGTAAATCATCAATAACTT-A
* *
10064866 TAGTAAATTAGT-TATAACTTTA
1 TAGTAAATCA-TCAATAAC-TTA
* *
10064888 TAATAAATTATCAATAACTTA
1 TAGTAAATCATCAATAACTTA
*
10064909 GTACTAAATCATCAATAACTTA
1 -TAGTAAATCATCAATAACTTA
** *
10064931 GTAGTAAATCATTTATAGCTTAA
1 -TAGTAAATCATCAATAACTT-A
* *
10064954 TAGTAAATAATTAATAA
1 TAGTAAATCATCAATAA
10064971 TTTAATAATA
Statistics
Matches: 87, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
21 4 0.05
22 79 0.91
23 4 0.05
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37
Consensus pattern (21 bp):
TAGTAAATCATCAATAACTTA
Found at i:10064947 original size:66 final size:66
Alignment explanation
Indices: 10064847--10064970 Score: 160
Period size: 66 Copynumber: 1.9 Consensus size: 66
10064837 TTTTGTGTAG
* * * *
10064847 TAAATCATCGATAACTTCATAGTAAATTAGTTATAACTTTATAATAAATTATCAATAACTTAGTA
1 TAAATCATCAATAACTTCATAGTAAATCAGTTATAACTTAATAATAAATAATCAATAACTTAGTA
10064912 C
66 C
* * * *
10064913 TAAATCATCAATAACTT-AGTAGTAAATCATTTATAGCTTAATAGTAAATAATTAATAA
1 TAAATCATCAATAACTTCA-TAGTAAATCAGTTATAACTTAATAATAAATAATCAATAA
10064971 TTTAATAATA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
65 1 0.02
66 48 0.98
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.37
Consensus pattern (66 bp):
TAAATCATCAATAACTTCATAGTAAATCAGTTATAACTTAATAATAAATAATCAATAACTTAGTA
C
Found at i:10067039 original size:20 final size:18
Alignment explanation
Indices: 10067014--10067056 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
10067004 TTTTTGTTAT
*
10067014 ATTTACTTTTTTAAATTTAA
1 ATTTACGTTTTT-AATTT-A
10067034 ATTTACGTTTTTAATTTA
1 ATTTACGTTTTTAATTTA
10067052 ATTTA
1 ATTTA
10067057 GTATAATGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
19 5 0.23
20 11 0.50
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (18 bp):
ATTTACGTTTTTAATTTA
Found at i:10069552 original size:30 final size:30
Alignment explanation
Indices: 10069516--10069573 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
10069506 CCCCCTCTCT
10069516 TTTGTTTTTTCATTCTCTT-ATTTTTTTTTG
1 TTTGTTTTTT-ATTCTCTTCATTTTTTTTTG
* *
10069546 TTTGTTTTTTTTTCTTTTCATTTTTTTT
1 TTTGTTTTTTATTCTCTTCATTTTTTTT
10069574 GTATTTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.05, C:0.09, G:0.05, T:0.81
Consensus pattern (30 bp):
TTTGTTTTTTATTCTCTTCATTTTTTTTTG
Found at i:10069617 original size:21 final size:22
Alignment explanation
Indices: 10069591--10069641 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
10069581 GTTTAATTTT
10069591 TATTATTGTAT-TTAATAATA-A
1 TATTATT-TATCTTAATAATATA
10069612 TATTA-TTATCTTAATAATATA
1 TATTATTTATCTTAATAATATA
10069633 TATTATTTA
1 TATTATTTA
10069642 ATAAAAATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 3 0.11
20 10 0.37
21 11 0.41
22 3 0.11
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTATTTATCTTAATAATATA
Found at i:10069627 original size:20 final size:18
Alignment explanation
Indices: 10069599--10069650 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
10069589 TTTATTATTG
10069599 TATTTAATAATAATATTAT
1 TATTTAATAATAATA-TAT
10069618 TATCTTAATAAT-ATATAT
1 TAT-TTAATAATAATATAT
*
10069636 TATTTAATAAAAATA
1 TATTTAATAATAATA
10069651 GCAAATTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 7 0.23
18 9 0.30
19 6 0.20
20 8 0.27
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
TATTTAATAATAATATAT
Found at i:10069628 original size:17 final size:17
Alignment explanation
Indices: 10069599--10069645 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 17
10069589 TTTATTATTG
10069599 TATTTAATAATAATATTAT
1 TATTTAATAAT-ATA-TAT
10069618 TATCTTAATAATATATAT
1 TAT-TTAATAATATATAT
10069636 TATTTAATAA
1 TATTTAATAA
10069646 AAATAGCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.26
18 6 0.22
19 6 0.22
20 8 0.30
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTTAATAATATATAT
Done.