Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 54 of 147
Found at i:10432792 original size:24 final size:23
Alignment explanation
Indices: 10432760--10432812 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 23
10432750 AAATAAAAAA
* *
10432760 TTAAAAAATAATATAATTTAAATT
1 TTAATAAATAATATAA-ATAAATT
*
10432784 TTAATAAATATTATAAATAAATT
1 TTAATAAATAATATAAATAAATT
*
10432807 TAAATA
1 TTAATA
10432813 TATATTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (23 bp):
TTAATAAATAATATAAATAAATT
Found at i:10432812 original size:23 final size:23
Alignment explanation
Indices: 10432752--10432818 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
10432742 AATTATACAA
*
10432752 ATAAA-AAA-TTAAA-AAATAAT
1 ATAAATAAATTTAAATAAATATT
* *
10432772 ATAATTTAAATTTTAATAAATATT
1 ATAA-ATAAATTTAAATAAATATT
*
10432796 ATAAATAAATTTAAATATATATT
1 ATAAATAAATTTAAATAAATATT
10432819 TTATATTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
20 4 0.11
22 3 0.08
23 20 0.54
24 10 0.27
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
ATAAATAAATTTAAATAAATATT
Found at i:10436138 original size:19 final size:17
Alignment explanation
Indices: 10436097--10436138 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
10436087 GTTTATTTTT
10436097 TATTT-GATTTAAATTA
1 TATTTAGATTTAAATTA
*
10436113 AATTTAGATATTAAATATA
1 TATTTAGAT-TTAAAT-TA
10436132 TATTTAG
1 TATTTAG
10436139 TTCAAATCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 4 0.19
17 3 0.14
18 6 0.29
19 8 0.38
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (17 bp):
TATTTAGATTTAAATTA
Found at i:10436421 original size:22 final size:23
Alignment explanation
Indices: 10436378--10436433 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
10436368 ATTAATTATT
* *
10436378 GTATATATAAATCTATTTAAATA
1 GTATATAAAAATCTATTAAAATA
10436401 -TAT-TAAAAATCATATTAAAATA
1 GTATATAAAAATC-TATTAAAATA
10436423 GTATATAAAAA
1 GTATATAAAAA
10436434 ATTTAAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 7 0.25
22 12 0.43
23 3 0.11
24 6 0.21
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (23 bp):
GTATATAAAAATCTATTAAAATA
Found at i:10438811 original size:2 final size:2
Alignment explanation
Indices: 10438804--10438838 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
10438794 TGTCCACTTA
*
10438804 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10438839 CACACACACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10445789 original size:2 final size:2
Alignment explanation
Indices: 10445784--10445820 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
10445774 TGTGTGTGTG
*
10445784 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10445821 TAAGTGGACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:10448473 original size:19 final size:18
Alignment explanation
Indices: 10448442--10448477 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
10448432 TTTTGATTGA
10448442 TTTTTAATTATTTTAATT
1 TTTTTAATTATTTTAATT
*
10448460 TTTTTGATTGATTTTAAT
1 TTTTTAATT-ATTTTAAT
10448478 AATTTATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (18 bp):
TTTTTAATTATTTTAATT
Found at i:10448502 original size:14 final size:14
Alignment explanation
Indices: 10448472--10448504 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
10448462 TTTGATTGAT
10448472 TTTAATAATTTATA
1 TTTAATAATTTATA
10448486 TTTAACTAATTTA-A
1 TTTAA-TAATTTATA
10448500 TTTAA
1 TTTAA
10448505 ATCGAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTAATAATTTATA
Found at i:10450259 original size:37 final size:38
Alignment explanation
Indices: 10450186--10450259 Score: 89
Period size: 37 Copynumber: 2.0 Consensus size: 38
10450176 TATTAAAAAT
* * **
10450186 TAATATATTTATATTATATTTTATATAAAATTTATATA
1 TAATATATTTATATTATATTATAAATAAAAAATATATA
10450224 TAATA-ATTTATATTA-ATATATAAATAAAAAATATAT
1 TAATATATTTATATTATAT-TATAAATAAAAAATATAT
10450260 TTTTTATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
36 2 0.06
37 24 0.77
38 5 0.16
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (38 bp):
TAATATATTTATATTATATTATAAATAAAAAATATATA
Found at i:10450276 original size:21 final size:22
Alignment explanation
Indices: 10450252--10450297 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
10450242 TATAAATAAA
* *
10450252 AAATATATTTTTTAT-TTTATT
1 AAATATATTTATAATATTTATT
*
10450273 AAATTTATTTATAATATTTATT
1 AAATATATTTATAATATTTATT
10450295 AAA
1 AAA
10450298 ATTTTAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
AAATATATTTATAATATTTATT
Found at i:10450732 original size:12 final size:12
Alignment explanation
Indices: 10450682--10450748 Score: 50
Period size: 11 Copynumber: 5.6 Consensus size: 12
10450672 ATATAATATT
* *
10450682 AAATTTAAATTT
1 AAATTTAGATTA
10450694 AAATTT-GATTCAA
1 AAATTTAGATT--A
*
10450707 AAATTGAGATTTA
1 AAATTTAGA-TTA
10450720 AAATTTAGATT-
1 AAATTTAGATTA
10450731 AAATTT-GATTA
1 AAATTTAGATTA
*
10450742 AATTTTA
1 AAATTTA
10450749 TTTTTTTAGT
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
10 4 0.09
11 14 0.32
12 8 0.18
13 14 0.32
14 2 0.05
15 2 0.05
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.45
Consensus pattern (12 bp):
AAATTTAGATTA
Found at i:10450738 original size:25 final size:23
Alignment explanation
Indices: 10450679--10450738 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 23
10450669 TTGATATAAT
10450679 ATTAAATTT-AAATTTAAATTTG
1 ATTAAATTTGAAATTTAAATTTG
* *
10450701 ATTCAAAAATTGAGATTTAAAATTTAG
1 ATT--AAATTTGAAATTT-AAATTT-G
10450728 ATTAAATTTGA
1 ATTAAATTTGA
10450739 TTAAATTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
22 3 0.10
24 5 0.17
25 12 0.40
26 6 0.20
27 4 0.13
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (23 bp):
ATTAAATTTGAAATTTAAATTTG
Found at i:10450742 original size:10 final size:11
Alignment explanation
Indices: 10450679--10450746 Score: 50
Period size: 13 Copynumber: 5.8 Consensus size: 11
10450669 TTGATATAAT
*
10450679 ATTAAATTTAA
1 ATTAAATTTAG
10450690 ATTTAAATTT-G
1 A-TTAAATTTAG
*
10450701 ATTCAAAAATTGAG
1 ATT---AAATTTAG
10450715 ATTTAAAATTTAG
1 A-TT-AAATTTAG
10450728 ATTAAATTT-G
1 ATTAAATTTAG
10450738 ATTAAATTT
1 ATTAAATTT
10450747 TATTTTTTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
10 12 0.25
11 8 0.17
12 10 0.21
13 14 0.29
14 2 0.04
15 2 0.04
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.46
Consensus pattern (11 bp):
ATTAAATTTAG
Found at i:10450796 original size:40 final size:40
Alignment explanation
Indices: 10450741--10450818 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
10450731 AAATTTGATT
*
10450741 AAATTTTATTTTTTTAGTTCGAATTCGACTTAAGATAATC
1 AAATTTTATTTTTTTAATTCGAATTCGACTTAAGATAATC
10450781 AAATTTTATTTTTTTAATTCGAATTCGACTTAAGATAA
1 AAATTTTATTTTTTTAATTCGAATTCGACTTAAGATAA
10450819 AAATTGAACT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (40 bp):
AAATTTTATTTTTTTAATTCGAATTCGACTTAAGATAATC
Found at i:10451235 original size:15 final size:14
Alignment explanation
Indices: 10451204--10451237 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
10451194 TATTATATAA
*
10451204 AATAATTTAAATTT
1 AATAATTTAAATAT
10451218 AATAATTTAAAATAT
1 AATAATTT-AAATAT
10451233 AATAA
1 AATAA
10451238 AATAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATAATTTAAATAT
Found at i:10451238 original size:10 final size:10
Alignment explanation
Indices: 10451225--10451267 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 10
10451215 TTTAATAATT
*
10451225 TAAAATATAA
1 TAAAATAAAA
10451235 TAAAATAAAA
1 TAAAATAAAA
*
10451245 TAATAT-AAA
1 TAAAATAAAA
10451254 TAAAA-AAAA
1 TAAAATAAAA
10451263 TAAAA
1 TAAAA
10451268 ATATGCAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 15 0.52
10 14 0.48
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:10451241 original size:5 final size:5
Alignment explanation
Indices: 10451225--10451267 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
10451215 TTTAATAATT
* *
10451225 TAAAA TATAA TAAAA TAAAA TAATA T-AAA TAAAA -AAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
10451268 ATATGCAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
4 7 0.22
5 25 0.78
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:10451243 original size:15 final size:14
Alignment explanation
Indices: 10451225--10451267 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
10451215 TTTAATAATT
10451225 TAAAATATAATAAAA
1 TAAAA-ATAATAAAA
10451240 T-AAAATAATATAAA
1 TAAAAATAATA-AAA
*
10451254 TAAAAAAAATAAAA
1 TAAAAATAATAAAA
10451268 ATATGCAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 6 0.24
14 10 0.40
15 9 0.36
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAAAATAATAAAA
Found at i:10451249 original size:13 final size:14
Alignment explanation
Indices: 10451200--10451258 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 14
10451190 TACATATTAT
*
10451200 ATAAAATAATTTAA
1 ATAAAATAATATAA
** *
10451214 ATTTAATAAT-TTA
1 ATAAAATAATATAA
*
10451227 A-AATATAATA-AA
1 ATAAAATAATATAA
10451239 ATAAAATAATATAA
1 ATAAAATAATATAA
10451253 ATAAAA
1 ATAAAA
10451259 AAAATAAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
12 7 0.21
13 11 0.32
14 16 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAAAATAATATAA
Found at i:10451251 original size:18 final size:18
Alignment explanation
Indices: 10451228--10451265 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
10451218 AATAATTTAA
10451228 AATAT-AATAAAATAAAAT
1 AATATAAATAAAA-AAAAT
10451246 AATATAAATAAAAAAAAT
1 AATATAAATAAAAAAAAT
10451264 AA
1 AA
10451266 AAATATGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (18 bp):
AATATAAATAAAAAAAAT
Found at i:10451491 original size:23 final size:24
Alignment explanation
Indices: 10451465--10451512 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
10451455 ATTTATATAT
*
10451465 TTATATAATAT-TTTATACAAAAA
1 TTATATAATATATTGATACAAAAA
**
10451488 TTATATGTTATATTGATACAAAAA
1 TTATATAATATATTGATACAAAAA
10451512 T
1 T
10451513 ATAATATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (24 bp):
TTATATAATATATTGATACAAAAA
Found at i:10455938 original size:26 final size:26
Alignment explanation
Indices: 10455909--10455973 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
10455899 GTCTAGACCT
* * *
10455909 AATTAGACCTATTGGTATTCGAGCCC
1 AATTAGACCCATTAGTATCCGAGCCC
* *
10455935 AATTAGGCCCATTAGTGTCCGAGCCC
1 AATTAGACCCATTAGTATCCGAGCCC
*
10455961 AATTAGGCCCATT
1 AATTAGACCCATT
10455974 TATGTCTAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
AATTAGACCCATTAGTATCCGAGCCC
Found at i:10456020 original size:3 final size:3
Alignment explanation
Indices: 10456014--10456049 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
10456004 TTTTAATGTG
*
10456014 ATT ATT ATT -TG ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
10456050 ATTTTCTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 1 0.03
3 29 0.97
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:10456976 original size:19 final size:19
Alignment explanation
Indices: 10456948--10456993 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
10456938 CGATTGCAGG
*
10456948 TTTT-TTTTTTCATTTTAT
1 TTTTATTTTTTCATTTCAT
*
10456966 TTTTATTTTTTGATTTCAT
1 TTTTATTTTTTCATTTCAT
10456985 TTTTATTTT
1 TTTTATTTT
10456994 ATTTTATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.80
Consensus pattern (19 bp):
TTTTATTTTTTCATTTCAT
Found at i:10457146 original size:22 final size:23
Alignment explanation
Indices: 10457118--10457168 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
10457108 AAAAATAATT
* *
10457118 ATAAAAAAATAAAAATCTTT-TCA
1 ATAAAATAA-AAAAATCTTTGTAA
10457141 ATAAAATAAAAAAATCTTTGTAA
1 ATAAAATAAAAAAATCTTTGTAA
10457164 ATAAA
1 ATAAA
10457169 GTTTTCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.40
23 15 0.60
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (23 bp):
ATAAAATAAAAAAATCTTTGTAA
Found at i:10457243 original size:20 final size:18
Alignment explanation
Indices: 10457188--10457243 Score: 51
Period size: 20 Copynumber: 2.9 Consensus size: 18
10457178 ATAACAGAAG
10457188 ATAATAAAAAA-ATTTTCA
1 ATAA-AAAAAATATTTTCA
*
10457206 ATAAAAAAGAAGTCTTTTCAA
1 ATAAAAAA-AA-TATTTTC-A
10457227 ATAAACAAAAATATTTT
1 ATAAA-AAAAATATTTT
10457244 TATCCTAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
17 4 0.13
18 6 0.19
20 10 0.32
21 8 0.26
22 3 0.10
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.32
Consensus pattern (18 bp):
ATAAAAAAAATATTTTCA
Found at i:10458596 original size:115 final size:115
Alignment explanation
Indices: 10458413--10458636 Score: 258
Period size: 115 Copynumber: 1.9 Consensus size: 115
10458403 GATCCATTCT
* * * *
10458413 TTAGGTGATTAATCCCCTATGTAAGGGATCGATCCCCTTTATTGGTTTTCAAACTCATTTTGCTT
1 TTAGGTGATCAATCCCCTATGTAAGGGATCGATCCCCTTTATTGGTTTTCAAACTCAGTTAGCAT
*
10458478 TCTGTGTAAATAATG-GATCGATC-CTTTTAAGGGAGGGA-TGATCTCATGC
66 TCTGTGTAAA-AAAGAGATCGATCTC-TTTAAGGGAGGGATTGATCTCATGC
* ** * * * *
10458527 TTAGGTGATCGATCCCCTATGTGGGGGGATCGATCCCTTTTGTTGGTTTTTAAAC-GAGGTTAGC
1 TTAGGTGATCAATCCCCTATGT-AAGGGATCGATCCCCTTTATTGGTTTTCAAACTCA-GTTAGC
* *
10458591 ATTCTGTGTAAAAAAGAGATCGATTTCTTTAATGGAGGGATTGATC
64 ATTCTGTGTAAAAAAGAGATCGATCTCTTTAAGGGAGGGATTGATC
10458637 AAGTAAGTAT
Statistics
Matches: 91, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
114 24 0.26
115 61 0.67
116 6 0.07
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.37
Consensus pattern (115 bp):
TTAGGTGATCAATCCCCTATGTAAGGGATCGATCCCCTTTATTGGTTTTCAAACTCAGTTAGCAT
TCTGTGTAAAAAAGAGATCGATCTCTTTAAGGGAGGGATTGATCTCATGC
Found at i:10459331 original size:19 final size:19
Alignment explanation
Indices: 10459303--10459340 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10459293 CAATCTCAAG
*
10459303 ATCAAGCAATATACCAATT
1 ATCAAACAATATACCAATT
10459322 ATCAAACAATATACCAATT
1 ATCAAACAATATACCAATT
10459341 TCACAAGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (19 bp):
ATCAAACAATATACCAATT
Found at i:10467437 original size:116 final size:116
Alignment explanation
Indices: 10467226--10467440 Score: 281
Period size: 116 Copynumber: 1.9 Consensus size: 116
10467216 TATATGATCA
* *
10467226 ATCCCCTAAGTGAGAGAATCGATCCCTTTTGTTGGTTTTCAAACTCATTTTACTTTCTGTGTAAA
1 ATCCCCTAAGTGAGAGAATCGATCCCTTTTGTTGGTTTTCAAACTCAGTTTACATTCTGTGTAAA
* * *
10467291 AAACAGATCGATCCCTTTAAAGGAATGATCAATCCCATGCTTAGGTGATTG
66 AAACAAATCAATCCCTTTAAAGGAAGGATCAATCCCATGCTTAGGTGATTG
* * * *
10467342 ATCCCCTATA-TGGGAGGATCGATCCCTTTTGTTGGTTTTTAAAC-GAGTTTAGCATTCTGTGTA
1 ATCCCCTA-AGTGAGAGAATCGATCCCTTTTGTTGGTTTTCAAACTCAGTTTA-CATTCTGTGTA
* * * *
10467405 AAAAAGAAATTAATCCCTTTAATGGAGGGATCAATC
64 AAAAACAAATCAATCCCTTTAAAGGAAGGATCAATC
10467441 AGGTAAGCAT
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
115 5 0.06
116 78 0.93
117 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (116 bp):
ATCCCCTAAGTGAGAGAATCGATCCCTTTTGTTGGTTTTCAAACTCAGTTTACATTCTGTGTAAA
AAACAAATCAATCCCTTTAAAGGAAGGATCAATCCCATGCTTAGGTGATTG
Found at i:10470054 original size:26 final size:25
Alignment explanation
Indices: 10470006--10470054 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
10469996 TTTGGATTTA
*
10470006 ATTTTTTAATAATTTTATGAAATAT
1 ATTTTTTAATAATTTAATGAAATAT
* *
10470031 ATTTTTATACTAATTTAATTAAAT
1 ATTTTT-TAATAATTTAATGAAAT
10470055 TTAACAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 6 0.30
26 14 0.70
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (25 bp):
ATTTTTTAATAATTTAATGAAATAT
Found at i:10470523 original size:30 final size:29
Alignment explanation
Indices: 10470457--10470523 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 29
10470447 CAAAACAAAT
10470457 CTTTAACTTTTAATTCATATTCAAATAAG
1 CTTTAACTTTTAATTCATATTCAAATAAG
*
10470486 CTCTTAACTTTTAATTTATATAT-AAATAAG
1 CT-TTAACTTTTAATTCATAT-TCAAATAAG
10470516 CCTTTAAC
1 -CTTTAAC
10470524 ATAAATCAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
29 2 0.06
30 29 0.85
31 3 0.09
ACGTcount: A:0.37, C:0.15, G:0.03, T:0.45
Consensus pattern (29 bp):
CTTTAACTTTTAATTCATATTCAAATAAG
Found at i:10471349 original size:35 final size:35
Alignment explanation
Indices: 10471310--10471379 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
10471300 ACTTGTTTTT
10471310 TTTTAT-ATTTTATTTTTTCAAACCAAAGTTTATAA
1 TTTTATGA-TTTATTTTTTCAAACCAAAGTTTATAA
* *
10471345 TTTTATGATTTATTTTTTCAAACTAAGGTTTATAA
1 TTTTATGATTTATTTTTTCAAACCAAAGTTTATAA
10471380 ATATTTCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 31 0.97
36 1 0.03
ACGTcount: A:0.33, C:0.07, G:0.06, T:0.54
Consensus pattern (35 bp):
TTTTATGATTTATTTTTTCAAACCAAAGTTTATAA
Found at i:10473183 original size:54 final size:54
Alignment explanation
Indices: 10473104--10473224 Score: 161
Period size: 54 Copynumber: 2.2 Consensus size: 54
10473094 TTTAAGAGGG
* * * * *
10473104 GATCGATCCCTTTTCTGGGTTTTCAAACTTGGAAAACATTTTGTCTGGGCAATC
1 GATCGATCCTTTTTCTGAGTTTTCAAACTTGGAAAACATTCTGTCTGAGCAACC
* * *
10473158 GATTGATCCTTTTTTTGAGTTTTCAAACTTGGAGAACATTCTGTCTGAGCAACC
1 GATCGATCCTTTTTCTGAGTTTTCAAACTTGGAAAACATTCTGTCTGAGCAACC
*
10473212 GATCAATCCTTTT
1 GATCGATCCTTTT
10473225 AAGAGGAGAT
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (54 bp):
GATCGATCCTTTTTCTGAGTTTTCAAACTTGGAAAACATTCTGTCTGAGCAACC
Found at i:10474048 original size:300 final size:300
Alignment explanation
Indices: 10473500--10474102 Score: 1073
Period size: 300 Copynumber: 2.0 Consensus size: 300
10473490 GAGGGGATCG
* * *
10473500 ATCCCTTCTCTTAGAGGATCGATCTCTTCTATCAAAACTTGCATAAATCATGTTTTGTTTCGAGA
1 ATCCCTTCTCTTAGAGGATCGATCTCTTCTATCAAAACTTGCATAAATCATATTTTGTTCCAAGA
10473565 ATTTGAGTTGTTTTGGTTCTCAAATAGATTTTGGCAAAATAGAAGGGTGAAAAAATGTTCAATTT
66 ATTTGAGTTGTTTTGGTTCTCAAATAGATTTTGGCAAAATAGAAGGGTGAAAAAATGTTCAATTT
*
10473630 AAGCTTAGAAAATATTGATTCAAGTTAGACAAATTTTTTTTTGTCAAATCAAAATTCTTAATCAA
131 AAGCTTAGAAAATATTGATTCAAGTTAGACAAATTTTTTTTTGTCAAATCAAAATTCTTAACCAA
* * *
10473695 TTCAAGGCCAACAATCTCTTTCTTTTTGATATGACAAAACCAAGTGAAAAAAAACTTAAGCATAA
196 TTCAAGACCAACAATCTCCTCCTTTTTGATATGACAAAACCAAGTGAAAAAAAACTTAAGCATAA
* *
10473760 GTTTTAAGCCATTTAAACAAAATCATATCACCGAGCCAAT
261 ATTTTAAGCCATTTAAACAAAATCATATCACCAAGCCAAT
10473800 ATCCCTTCTCTTAGAGGATCGATCTCTTCTATCAAAACTTGCATAAATCATATTTTGTTCCAAGA
1 ATCCCTTCTCTTAGAGGATCGATCTCTTCTATCAAAACTTGCATAAATCATATTTTGTTCCAAGA
*
10473865 ATTTGAGTTGTTTTGGTTCTCAAATGGATTTTGGCAAAATAGAAGGGTGAAAAAATGTTCAATTT
66 ATTTGAGTTGTTTTGGTTCTCAAATAGATTTTGGCAAAATAGAAGGGTGAAAAAATGTTCAATTT
10473930 AAGCTTAGAAAATATTGATTCAAGTTAGACAAATTTTTATTTTGTCAAATCAAAATTCTTAACCA
131 AAGCTTAGAAAATATTGATTCAAGTTAGACAAATTTTT-TTTTGTCAAATCAAAATTCTTAACCA
* *
10473995 ATTCAAGACCAACAATCTCCTCCTTTTTGATATGATAAAATCAAGTG-AAAAAAACTTAAGCATA
195 ATTCAAGACCAACAATCTCCTCCTTTTTGATATGACAAAACCAAGTGAAAAAAAACTTAAGCATA
*
10474059 AATTTTAAGCCATTTAAACAAAATCATATCATCAAGCCAAT
260 AATTTTAAGCCATTTAAACAAAATCATATCACCAAGCCAAT
10474100 ATC
1 ATC
10474103 ATTAGGATCA
Statistics
Matches: 289, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
300 222 0.77
301 67 0.23
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (300 bp):
ATCCCTTCTCTTAGAGGATCGATCTCTTCTATCAAAACTTGCATAAATCATATTTTGTTCCAAGA
ATTTGAGTTGTTTTGGTTCTCAAATAGATTTTGGCAAAATAGAAGGGTGAAAAAATGTTCAATTT
AAGCTTAGAAAATATTGATTCAAGTTAGACAAATTTTTTTTTGTCAAATCAAAATTCTTAACCAA
TTCAAGACCAACAATCTCCTCCTTTTTGATATGACAAAACCAAGTGAAAAAAAACTTAAGCATAA
ATTTTAAGCCATTTAAACAAAATCATATCACCAAGCCAAT
Found at i:10481762 original size:21 final size:21
Alignment explanation
Indices: 10481727--10481774 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 21
10481717 AAAAGGTAGA
10481727 AAAATATTCAATTTAAGCTTAG
1 AAAATATTCAATTTAAG-TTAG
10481749 AAAATATT-AATTTAAGTTAG
1 AAAATATTCAATTTAAGTTAG
10481769 ACAAAT
1 A-AAAT
10481775 TTTTGTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 5 0.20
21 12 0.48
22 8 0.32
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.35
Consensus pattern (21 bp):
AAAATATTCAATTTAAGTTAG
Found at i:10488416 original size:2 final size:2
Alignment explanation
Indices: 10488411--10488444 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
10488401 TGTGTGTGTG
*
10488411 TA TA TA CA TA TA TA TA TA TA TA TA TA -A TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10488445 TAAGTGGACA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:10492023 original size:74 final size:73
Alignment explanation
Indices: 10491939--10492120 Score: 247
Period size: 74 Copynumber: 2.5 Consensus size: 73
10491929 AATGCCTTAC
* *
10491939 CCGATCGATCCTTTTAAGATGGGATCGATCCCTTTTCTGGGTTTTCAAACTTGGAGAACATTTTA
1 CCGATCGATCCTTTTAAGA-GGGATCGATCCCTTTTCTGGGTTTTCAAACTTGGAAAACATTCTA
*
10492004 TCTGGGCAA
65 TCTGAGCAA
* ** * *
10492013 CTGATCGATCCTTTTAAGAGGGGATCGATTTCTTTTTTGGGTTTTCAAACTTGGAAAACATTCTG
1 CCGATCGATCCTTTTAAGA-GGGATCGATCCCTTTTCTGGGTTTTCAAACTTGGAAAACATTCTA
10492078 TCTGAGCAA
65 TCTGAGCAA
* *
10492087 CCGATCAATCCCTTTAAGAGGAGATCGATCCCTT
1 CCGATCGATCCTTTTAAGAGG-GATCGATCCCTT
10492121 GCCTTAGGTG
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
73 2 0.02
74 91 0.98
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (73 bp):
CCGATCGATCCTTTTAAGAGGGATCGATCCCTTTTCTGGGTTTTCAAACTTGGAAAACATTCTAT
CTGAGCAA
Found at i:10492929 original size:301 final size:301
Alignment explanation
Indices: 10492382--10492982 Score: 1035
Period size: 301 Copynumber: 2.0 Consensus size: 301
10492372 TGATCGATCT
* *
10492382 CTTCTCTTAGGGGATCGGTCTATTCTATCAAAACTTGCATAAATCATGTTTTATTCTGAGAATTT
1 CTTCCCTTAGGGGATCGATCTATTCTATCAAAACTTGCATAAATCATGTTTTATTCTGAGAATTT
*
10492447 GAGTTGTTTTGGTTCTCAAATAGATTTTGGCAAAATAAAAGGGTGAAAAAATGTTCAATTTAAGC
66 GAGTTGTTTTGGTTCTCAAATAGATTTTGGCAAAATAAAAGGGTGAAAAAATATTCAATTTAAGC
*
10492512 TTATAAAATATTGATTCAAGTTAGACAAAATTTTGTTTTGTCAAATCAAAATTCTTAATCAATTC
131 TTAAAAAATATTGATTCAAGTTAGACAAAATTTTGTTTTGTCAAATCAAAATTCTTAATCAATTC
* * *
10492577 AAGGCCAAGAATCTCCCTCTTTTTGATATGATAAAACCAAATGAAAAAAAACTTAAGCATAAGTT
196 AAGGCCAACAATCTCCCTCTTTTTGATATGACAAAACCAAATGAAAAAAAACTTAAGCATAAATT
* *
10492642 TTAAGCCATTTAAACAAAATCATATCATCGAGCTAATATCC
261 TTAAGCCATTTAAACAAAATCATATCACCGAGCCAATATCC
* *
10492683 CTTCCCTTAGGGGATCGATCTCTTCTATCAAAACTTGCATAAATCATGTTTTGTT-TCGAGAATT
1 CTTCCCTTAGGGGATCGATCTATTCTATCAAAACTTGCATAAATCATGTTTTATTCT-GAGAATT
*
10492747 TGAGTTGTTTTGGTTCTCAAATAGATTTTGGCAAAATAGAAGGGTGAAAAAATATTCAATTTAAG
65 TGAGTTGTTTTGGTTCTCAAATAGATTTTGGCAAAATAAAAGGGTGAAAAAATATTCAATTTAAG
*
10492812 CTTAAAAAATATTGATTCAAGTTAGACAAATTTTTGTTTTGTCAAATCAAAATTCTTAATCAATT
130 CTTAAAAAATATTGATTCAAGTTAGACAAAATTTTGTTTTGTCAAATCAAAATTCTTAATCAATT
* *
10492877 CAAGGCTAACAATCTCCC-CATTTTTGATATGACAAAACCAAGTGAAAAAAAACTTAAGCATAAA
195 CAAGGCCAACAATCTCCCTC-TTTTTGATATGACAAAACCAAATGAAAAAAAACTTAAGCATAAA
10492941 TTTTAAGCCATTTAAACAAAATCATATCACCGAGCCAATATC
259 TTTTAAGCCATTTAAACAAAATCATATCACCGAGCCAATATC
10492983 ATTAGGATCA
Statistics
Matches: 283, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
300 2 0.01
301 281 0.99
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (301 bp):
CTTCCCTTAGGGGATCGATCTATTCTATCAAAACTTGCATAAATCATGTTTTATTCTGAGAATTT
GAGTTGTTTTGGTTCTCAAATAGATTTTGGCAAAATAAAAGGGTGAAAAAATATTCAATTTAAGC
TTAAAAAATATTGATTCAAGTTAGACAAAATTTTGTTTTGTCAAATCAAAATTCTTAATCAATTC
AAGGCCAACAATCTCCCTCTTTTTGATATGACAAAACCAAATGAAAAAAAACTTAAGCATAAATT
TTAAGCCATTTAAACAAAATCATATCACCGAGCCAATATCC
Found at i:10509518 original size:22 final size:23
Alignment explanation
Indices: 10509475--10509529 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
10509465 TAATTTTTAA
*
10509475 ATTTTTATATATTATTTTAATAGG
1 ATTTTTATATATTATTTAAATA-G
10509499 ATTTTTA-ATA-TATTTAAATAG
1 ATTTTTATATATTATTTAAATAG
*
10509520 ATTTATATAT
1 ATTTTTATAT
10509530 TAAATAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 7 0.25
22 11 0.39
23 3 0.11
24 7 0.25
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (23 bp):
ATTTTTATATATTATTTAAATAG
Found at i:10511524 original size:30 final size:31
Alignment explanation
Indices: 10511483--10511548 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
10511473 TAAAATATTA
* *
10511483 AAAATTAATATAT--TTATATTATATTTATAT
1 AAAATTAATATATAATAAT-TTATATTAATAT
*
10511513 AAAATTTATATATAATAATTTATATTAATAT
1 AAAATTAATATATAATAATTTATATTAATAT
10511544 AAAAT
1 AAAAT
10511549 AAAAAATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 12 0.39
31 16 0.52
32 3 0.10
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (31 bp):
AAAATTAATATATAATAATTTATATTAATAT
Found at i:10511534 original size:14 final size:14
Alignment explanation
Indices: 10511508--10511542 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
10511498 ATATTATATT
10511508 TATATAA-AATTTA
1 TATATAATAATTTA
10511521 TATATAATAATTTA
1 TATATAATAATTTA
10511535 TAT-TAATA
1 TATATAATA
10511543 TAAAATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TATATAATAATTTA
Found at i:10511541 original size:13 final size:13
Alignment explanation
Indices: 10511486--10511542 Score: 68
Period size: 11 Copynumber: 4.5 Consensus size: 13
10511476 AATATTAAAA
10511486 ATTAATATATTTAT
1 ATTAATA-ATTTAT
10511500 ATT-AT-ATTTAT
1 ATTAATAATTTAT
10511511 A-TAA-AATTTAT
1 ATTAATAATTTAT
10511522 ATATAATAATTTAT
1 AT-TAATAATTTAT
10511536 ATTAATA
1 ATTAATA
10511543 TAAAATAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
10 1 0.03
11 15 0.39
13 10 0.26
14 12 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTAATAATTTAT
Found at i:10511559 original size:36 final size:37
Alignment explanation
Indices: 10511488--10511559 Score: 85
Period size: 36 Copynumber: 2.0 Consensus size: 37
10511478 TATTAAAAAT
* * **
10511488 TAATATATTTATATTATATTTATATAAAATTTATATA
1 TAATATATTTATATTATATTAAAATAAAAAATATATA
10511525 TAATA-ATTTATATTA-ATATAAAATAAAAAATATAT
1 TAATATATTTATATTATAT-TAAAATAAAAAATATAT
10511560 TTTTTATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
35 2 0.07
36 23 0.77
37 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (37 bp):
TAATATATTTATATTATATTAAAATAAAAAATATATA
Found at i:10511581 original size:21 final size:22
Alignment explanation
Indices: 10511552--10511597 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
10511542 ATAAAATAAA
* *
10511552 AAATATATTTTTTAT-TTTATT
1 AAATATATTTATAATATTTATT
*
10511573 AAATTTATTTATAATATTTATT
1 AAATATATTTATAATATTTATT
10511595 AAA
1 AAA
10511598 ATTTTAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
AAATATATTTATAATATTTATT
Found at i:10521492 original size:21 final size:23
Alignment explanation
Indices: 10521447--10521493 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
10521437 TTTTGAAAAC
* *
10521447 TTTATTTACAAAGATTTTTTTAT
1 TTTATTGACAAAGATTTTTTAAT
10521470 TTTATTGA-AAAGA-TTTTTAAT
1 TTTATTGACAAAGATTTTTTAAT
10521491 TTT
1 TTT
10521494 TTTATAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.45
22 5 0.23
23 7 0.32
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (23 bp):
TTTATTGACAAAGATTTTTTAAT
Found at i:10521494 original size:22 final size:23
Alignment explanation
Indices: 10521447--10521493 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
10521437 TTTTGAAAAC
* *
10521447 TTTATTTACAAAGATTTTTTTAT
1 TTTATTGACAAAGATTTTTATAT
10521470 TTTATTGA-AAAGATTTTTA-AT
1 TTTATTGACAAAGATTTTTATAT
10521491 TTT
1 TTT
10521494 TTTATAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 10 0.45
23 7 0.32
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (23 bp):
TTTATTGACAAAGATTTTTATAT
Found at i:10521609 original size:16 final size:16
Alignment explanation
Indices: 10521590--10521620 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10521580 TATAAAATAA
10521590 AAAAATCAAATCAAAT
1 AAAAATCAAATCAAAT
*
10521606 AAAAATGAAATCAAA
1 AAAAATCAAATCAAA
10521621 AAATAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAAATCAAATCAAAT
Found at i:10521642 original size:19 final size:19
Alignment explanation
Indices: 10521591--10521635 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
10521581 ATAAAATAAA
10521591 AAAATCAAATCAAATAAAAAT
1 AAAATCAAA--AAATAAAAAT
*
10521612 GAAATCAAAAAATAAAAAT
1 AAAATCAAAAAATAAAAAT
10521631 AAAAT
1 AAAAT
10521636 GGAAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 14 0.64
21 8 0.36
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.18
Consensus pattern (19 bp):
AAAATCAAAAAATAAAAAT
Found at i:10522555 original size:3 final size:3
Alignment explanation
Indices: 10522547--10522571 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10522537 GAAAGAAAAT
10522547 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
10522572 CAAATAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:10523283 original size:119 final size:118
Alignment explanation
Indices: 10522882--10523291 Score: 351
Period size: 119 Copynumber: 3.4 Consensus size: 118
10522872 AAAGGATTAG
* * * * * *
10522882 GATGAAACTATAAGTCATAAAAAATGATCTGGACTGAGCCAAGATCAGGTGATCAGGATAAAATC
1 GATGAAACTCTAAGCCATAAGAAATGATCTAGACT-AACCAAGATCAAGTGATCAGGATAAAATC
* * * * * *
10522947 ACAAATCAAAATGAAGCGATCAAGACTGAGTCGAGGTCAAAAATAAATGACCAA
65 ACGAGTCAAAATAAAGCGACCAAGACTAAGTCGAGATCAAAAATAAATGACCAA
* * * * * * *
10523001 GA-CAAAATCAAGAGTCATAAG-AATGATTTAGACTAAATCAAGATCAAATGATCAGGATAAAAT
1 GATGAAACTCTA-AGCCATAAGAAATGATCTAGACT-AACCAAGATCAAGTGATCAGGATAAAAT
** * * * * * * *
10523064 CACGAGTCAAAAATAAAGTAACTAAGATTTAGTCAAAATAAAAAATAAATGACCGA
64 CACGAGTC-AAAATAAAGCGACCAAGACTAAGTCGAGATCAAAAATAAATGACCAA
* * * * * **
10523120 GATGGAACTAC-AAGCCATAAGAAATGATTTGGATTGAACCAAGATCAAGTGACCAAAATAAAA-
1 GATGAAACT-CTAAGCCATAAGAAATGATCTAGACT-AACCAAGATCAAGTGATCAGGATAAAAT
* ***
10523183 CTATGAGTCAAAATAAAGCGACCAAGACTAAGTCGAGATCAAAAATAAATGACTGG
64 C-ACGAGTCAAAATAAAGCGACCAAGACTAAGTCGAGATCAAAAATAAATGACCAA
* *
10523239 GATGAAACTCTAAGCCATAAGAAATGATCTAGACTAAGCTAAGATTAAGTGAT
1 GATGAAACTCTAAGCCATAAGAAATGATCTAGACTAA-CCAAGATCAAGTGAT
10523292 TGGGATGAAA
Statistics
Matches: 227, Mismatches: 56, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
118 49 0.22
119 134 0.59
120 43 0.19
121 1 0.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (118 bp):
GATGAAACTCTAAGCCATAAGAAATGATCTAGACTAACCAAGATCAAGTGATCAGGATAAAATCA
CGAGTCAAAATAAAGCGACCAAGACTAAGTCGAGATCAAAAATAAATGACCAA
Found at i:10524520 original size:22 final size:22
Alignment explanation
Indices: 10524472--10524521 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
10524462 AGTTTAAGTA
*
10524472 TTTTTTTTTTCCTTCTTTGTCT
1 TTTTTTTTTTACTTCTTTGTCT
* *
10524494 CTTTTTTTTTACTT-TTTG-AT
1 TTTTTTTTTTACTTCTTTGTCT
10524514 TTTTTTTT
1 TTTTTTTT
10524522 GTTTTTTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 8 0.33
21 4 0.17
22 12 0.50
ACGTcount: A:0.04, C:0.12, G:0.04, T:0.80
Consensus pattern (22 bp):
TTTTTTTTTTACTTCTTTGTCT
Found at i:10524534 original size:18 final size:18
Alignment explanation
Indices: 10524493--10524558 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 18
10524483 CTTCTTTGTC
10524493 TCTTTTTTTTTACTTTTT
1 TCTTTTTTTTTACTTTTT
** **
10524511 GATTTTTTTTTGTTTTTT
1 TCTTTTTTTTTACTTTTT
* ** *
10524529 TCTTTTTGTACACCTTCTT
1 TCTTTTTTTTTA-CTTTTT
10524548 TCTTTTTTTTT
1 TCTTTTTTTTT
10524559 CTCCTTTACT
Statistics
Matches: 32, Mismatches: 15, Indels: 1
0.67 0.31 0.02
Matches are distributed among these distances:
18 20 0.62
19 12 0.38
ACGTcount: A:0.06, C:0.12, G:0.05, T:0.77
Consensus pattern (18 bp):
TCTTTTTTTTTACTTTTT
Found at i:10527343 original size:14 final size:14
Alignment explanation
Indices: 10527326--10527364 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
10527316 TTAAATTGCA
*
10527326 TATTTTTATTTTTT
1 TATTTTTATTATTT
*
10527340 TATTTATATTATTT
1 TATTTTTATTATTT
10527354 TA-TTTTATTAT
1 TATTTTTATTAT
10527365 ATTTTAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TATTTTTATTATTT
Found at i:10527361 original size:10 final size:9
Alignment explanation
Indices: 10527329--10527370 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
10527319 AATTGCATAT
10527329 TTTTATTT-
1 TTTTATTTA
10527337 TTTTATTTA
1 TTTTATTTA
*
10527346 TATTATTTTA
1 TTTTA-TTTA
10527356 TTTTATTATA
1 TTTTATT-TA
10527366 TTTTA
1 TTTTA
10527371 AATTATTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 8 0.28
9 6 0.21
10 15 0.52
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTATTTA
Found at i:10527819 original size:40 final size:40
Alignment explanation
Indices: 10527774--10527851 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
10527764 AGTTCAATTT
*
10527774 TTATCTTAAGTCGAATTCGAATTAAAAAAATAAAATTTGA
1 TTATCTTAAGTCGAATTCGAACTAAAAAAATAAAATTTGA
10527814 TTATCTTAAGTCGAATTCGAACTAAAAAAATAAAATTT
1 TTATCTTAAGTCGAATTCGAACTAAAAAAATAAAATTT
10527852 AATCAAATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (40 bp):
TTATCTTAAGTCGAATTCGAACTAAAAAAATAAAATTTGA
Found at i:10527861 original size:10 final size:11
Alignment explanation
Indices: 10527846--10527913 Score: 50
Period size: 11 Copynumber: 5.8 Consensus size: 11
10527836 TAAAAAAATA
10527846 AAATTTAATC-
1 AAATTTAATCT
10527856 AAATTTAATCT
1 AAATTTAATCT
10527867 AAATTTTAAATCT
1 AAA-TTT-AATCT
*
10527880 CAATTTTTGAATC-
1 -AA-ATTT-AATCT
*
10527893 AAATTTAAATTT
1 AAATTT-AATCT
10527905 AAATTTAAT
1 AAATTTAAT
10527914 ATTATATCAA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
10 10 0.21
11 12 0.26
12 11 0.23
13 5 0.11
14 9 0.19
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.46
Consensus pattern (11 bp):
AAATTTAATCT
Found at i:10528340 original size:21 final size:22
Alignment explanation
Indices: 10528295--10528340 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
10528285 AATTTAAAAT
* *
10528295 TTTAATAAATATTATAAATAAA
1 TTTAATAAATATAAAAAATAAA
*
10528317 TTTAATAAA-ATAAAAAATATA
1 TTTAATAAATATAAAAAATAAA
10528338 TTT
1 TTT
10528341 TTTATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
TTTAATAAATATAAAAAATAAA
Found at i:10528382 original size:33 final size:33
Alignment explanation
Indices: 10528345--10528418 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
10528335 ATATTTTTTA
* *
10528345 TTTATATATTAATATAA-ATTATTATATATAAAT
1 TTTATATATTAATATAATATAAATATAT-TAAAT
* *
10528378 TTTATATA-AAATATAATATAAATATATTAATT
1 TTTATATATTAATATAATATAAATATATTAAAT
10528410 TTTA-ATATT
1 TTTATATATT
10528419 TTATATGACA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
31 3 0.09
32 15 0.44
33 16 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (33 bp):
TTTATATATTAATATAATATAAATATATTAAAT
Found at i:10530358 original size:10 final size:10
Alignment explanation
Indices: 10530343--10530376 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
10530333 TCAAATCAAA
10530343 TTATATATTT
1 TTATATATTT
10530353 TTATATATTT
1 TTATATATTT
*
10530363 TT-TAAATTT
1 TTATATATTT
10530372 TTATA
1 TTATA
10530377 AAATAAGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTATATATTT
Found at i:10532840 original size:2 final size:2
Alignment explanation
Indices: 10532833--10532877 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
10532823 TGTCCACTTA
* * *
10532833 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT GT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10532875 AT A
1 AT A
10532878 CACACACACA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10533447 original size:12 final size:12
Alignment explanation
Indices: 10533430--10533454 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10533420 CAATAATACG
10533430 TAAAAAAATTAT
1 TAAAAAAATTAT
10533442 TAAAAAAATTAT
1 TAAAAAAATTAT
10533454 T
1 T
10533455 TATAATTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAAAAAATTAT
Found at i:10537258 original size:16 final size:16
Alignment explanation
Indices: 10537237--10537270 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
10537227 ATTAATGAAA
10537237 ATATAA-TAAAAATTAT
1 ATATAACTAAAAA-TAT
10537253 ATATAACTAAAAATAT
1 ATATAACTAAAAATAT
10537269 AT
1 AT
10537271 GAAATTACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATAACTAAAAATAT
Found at i:10537514 original size:28 final size:28
Alignment explanation
Indices: 10537467--10537523 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
10537457 TGATTAATTT
10537467 TAAAAATTAAAAAAATTAATTTAATTAA
1 TAAAAATTAAAAAAATTAATTTAATTAA
10537495 TAAAAA-TAAAATAACA-TAATTTAATTAA
1 TAAAAATTAAAA-AA-ATTAATTTAATTAA
10537523 T
1 T
10537524 TTAATATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 5 0.19
28 21 0.78
29 1 0.04
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (28 bp):
TAAAAATTAAAAAAATTAATTTAATTAA
Found at i:10539552 original size:16 final size:16
Alignment explanation
Indices: 10539531--10539562 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10539521 ACCTATTTCA
10539531 AAGCTTGTCTTGCTCC
1 AAGCTTGTCTTGCTCC
10539547 AAGCTTGTCTTGCTCC
1 AAGCTTGTCTTGCTCC
10539563 TTGCCGTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.31, G:0.19, T:0.38
Consensus pattern (16 bp):
AAGCTTGTCTTGCTCC
Found at i:10553279 original size:47 final size:46
Alignment explanation
Indices: 10553052--10553763 Score: 581
Period size: 47 Copynumber: 14.9 Consensus size: 46
10553042 AAAATTTAAA
* * *
10553052 ATCTGAAAAAGACTCCTCTCAGCAGAGGCTCAACAATTTTAAAAATCTT
1 ATCTTAAAAAG-CTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATC-C
* *
10553101 ATCTTAAAAAACTTCTCTCAGCAGAGGCTCAACAACTTTAAAAAATTCTC
1 ATCTTAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT--AAAA-TC-C
* * * * *
10553151 A-CATTGAAAAAGGTTCATCTCAGTAG-GCGCTCAACGACTTTAAAAATTC
1 ATC-TT-AAAAA-GCTCCTCTCAGCAGAG-GCTCAACAACTTT-AAAATCC
* * * **
10553200 -TCTTGAAAAAGCTCATCTCAACAAAATCTCAACAACTTTAAAATCC
1 ATCTT-AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCC
* * * *
10553246 ATCTTAAAAAAGCTCATCTCAGTAGAGGGTCAACAACTTTAGAATCTC
1 ATCTT-AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATC-C
* *
10553294 AT-TTGAAAAAGCTCCTCTCAGCAGATGCTCAATAACTTTAAAATCTC
1 ATCTT-AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATC-C
** ** * * *
10553341 ATCTGGAAAAGCTTTTCTCAACAGAGGCTCAATAACTTTAAAATTTC
1 ATCTTAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCC
* * * *
10553388 AT-TTGAAAAGCTTCGCTCAGCAGAGGCTCAACAACTTTAAAATTTC
1 ATCTTAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCC
* * *
10553434 ATCTTAAAAAGCTCCTCTCAGTAGAGGTTCAACAACTTTAAAATCTT
1 ATCTTAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATC-C
* * *
10553481 AT-TTGAAAAGCTCTTTTCAGCAGAGGCTCAACAACTTTAAAAATCC
1 ATCTTAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCC
* *
10553527 ATCTTCAAAAGCTCCTTTCAGCAGAGGCTCAACAACTTTAAAAATCC
1 ATCTTAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCC
* * * * **
10553574 ATCATGAAAAGCTCCTTTCAGCAGAGGCTTAACAACTTTAAAATTTAAA
1 ATCTTAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA--T-CC
* * * * * * *
10553623 ATATGAAATAGGTTCATCTTAGCAGAGGCTCAACAACTTTAAAATTTC
1 ATCTTAAA-AAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCC
* * *
10553671 ATCTTGAAAAAGCTTCTCTCAGCAGAGACTCAATAACTTTAAAAATCTC
1 ATCTT-AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATC-C
* *
10553720 ATCTTGAAAAAGCTCCTCTCAACAGAGGCTTAACAACTTTAAAA
1 ATCTT-AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
10553764 ATCTATCTGT
Statistics
Matches: 546, Mismatches: 94, Indels: 47
0.79 0.14 0.07
Matches are distributed among these distances:
46 85 0.16
47 255 0.47
48 72 0.13
49 66 0.12
50 36 0.07
51 11 0.02
52 21 0.04
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (46 bp):
ATCTTAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCC
Found at i:10553436 original size:93 final size:93
Alignment explanation
Indices: 10553005--10553763 Score: 634
Period size: 93 Copynumber: 7.9 Consensus size: 93
10552995 TCATTAAATC
*** * * *
10553005 GAAAATGCTTCTCTCATTTGAGGCTCGACAACTTTTAAAAATTTAAAATCTGAAAAAGACTCCTC
1 GAAAA-GCTTCTCTCAGCAGAGGCTCAACAAC-TTT-AAAATTT--CATCTGAAAAAG-CTCATC
*
10553070 TCAGCAGAGGCTCAACAATTTTAAAAATCTT-ATCTT
60 TCAGCAGAGGCTCAACAACTTT-AAAAT-TTCAT-TT
* * *
10553106 AAAAAACTTCTCTCAGCAGAGGCTCAACAACTTTAAAAAATTCTCA-CATTGAAAAAGGTTCATC
1 GAAAAGCTTCTCTCAGCAGAGGCTCAACAACTTT--AAAATT-TCATC--TGAAAAA-GCTCATC
* * *
10553170 TCAGTAG-GCGCTCAACGACTTTAAAAATTC-TCTT
60 TCAGCAGAG-GCTCAACAACTTTAAAATTTCAT-TT
* * ** * *
10553204 GAAAAAGC-TCATCTCAACAAAATCTCAACAACTTTAAAA-TCCATCTTAAAAAAGCTCATCTCA
1 G-AAAAGCTTC-TCTCAGCAGAGGCTCAACAACTTTAAAATTTCATC-TGAAAAAGCTCATCTCA
* * * *
10553267 GTAGAGGGTCAACAACTTTAGAATCTCATTT
63 GCAGAGGCTCAACAACTTTAAAATTTCATTT
* * * * * ** *
10553298 GAAAAAGCTCCTCTCAGCAGATGCTCAATAACTTTAAAATCTCATCTGGAAAAGCTTTTCTCAAC
1 G-AAAAGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTGAAAAAGCTCATCTCAGC
*
10553363 AGAGGCTCAATAACTTTAAAATTTCATTT
65 AGAGGCTCAACAACTTTAAAATTTCATTT
* * * *
10553392 GAAAAGCTTCGCTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTTAAAAAGCTCCTCTCAGTA
1 GAAAAGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTGAAAAAGCTCATCTCAGCA
*
10553457 GAGGTTCAACAACTTTAAAATCTT-ATTT
66 GAGGCTCAACAACTTTAAAAT-TTCATTT
* * * ** * *
10553485 GAAAAGC-TCTTTTCAGCAGAGGCTCAACAACTTTAAAAATCCATCTTCAAAAGCTCCTTTCAGC
1 GAAAAGCTTC-TCTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTGAAAAAGCTCATCTCAGC
* * *
10553549 AGAGGCTCAACAACTTTAAAAATCCATCAT
65 AGAGGCTCAACAACTTTAAAATTTCAT-TT
* * * * * * * *
10553579 GAAAAGCTCCTTTCAGCAGAGGCTTAACAACTTTAAAATTTAAAATATGAAATAGGTTCATCTTA
1 GAAAAGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAATTT--CATCTGAAA-AAGCTCATCTCA
10553644 GCAGAGGCTCAACAACTTTAAAATTTCATCTT
63 GCAGAGGCTCAACAACTTTAAAATTTCAT-TT
* * * *
10553676 GAAAAAGCTTCTCTCAGCAGAGACTCAATAACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTCA
1 G-AAAAGCTTCTCTCAGCAGAGGCTCAACAACTTT-AAAATTTCATC-TGAAAAAGCTCATCTCA
* *
10553741 ACAGAGGCTTAACAACTTTAAAA
63 GCAGAGGCTCAACAACTTTAAAA
10553764 ATCTATCTGT
Statistics
Matches: 534, Mismatches: 99, Indels: 54
0.78 0.14 0.08
Matches are distributed among these distances:
92 3 0.01
93 152 0.28
94 139 0.26
95 17 0.03
96 7 0.01
97 72 0.13
98 42 0.08
99 40 0.07
100 56 0.10
101 6 0.01
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.29
Consensus pattern (93 bp):
GAAAAGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTGAAAAAGCTCATCTCAGCA
GAGGCTCAACAACTTTAAAATTTCATTT
Found at i:10557331 original size:10 final size:10
Alignment explanation
Indices: 10557316--10557343 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
10557306 TTTTCCATAT
10557316 CATCTTGAGC
1 CATCTTGAGC
10557326 CATCTTGAGC
1 CATCTTGAGC
10557336 CATCTTGA
1 CATCTTGA
10557344 TCTAATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (10 bp):
CATCTTGAGC
Found at i:10558122 original size:11 final size:12
Alignment explanation
Indices: 10558097--10558125 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
10558087 AATGAAAAGT
10558097 AAAATAAAGATA
1 AAAATAAAGATA
10558109 AAAATAAAGA-A
1 AAAATAAAGATA
10558120 AAAATA
1 AAAATA
10558126 CGGATGCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (12 bp):
AAAATAAAGATA
Found at i:10564836 original size:23 final size:22
Alignment explanation
Indices: 10564806--10564848 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
10564796 ATGTGTGTGA
*
10564806 ATTTTTTTGCTTTTTATTTTCG
1 ATTTTTTTGATTTTTATTTTCG
*
10564828 ATTTGTTTTGATTTTTTTTTT
1 ATTT-TTTTGATTTTTATTTT
10564849 ACCTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.09, C:0.05, G:0.09, T:0.77
Consensus pattern (22 bp):
ATTTTTTTGATTTTTATTTTCG
Found at i:10564953 original size:12 final size:12
Alignment explanation
Indices: 10564936--10564960 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10564926 AAGTAGTTAA
10564936 TTTTGGCCTGAC
1 TTTTGGCCTGAC
10564948 TTTTGGCCTGAC
1 TTTTGGCCTGAC
10564960 T
1 T
10564961 CTCGAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.24, T:0.44
Consensus pattern (12 bp):
TTTTGGCCTGAC
Found at i:10565859 original size:18 final size:16
Alignment explanation
Indices: 10565836--10565886 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 16
10565826 TATCTCATTT
10565836 TTTATTACTTATTCTTAA
1 TTTATTA-TTATT-TTAA
*
10565854 TTTATTAATTAGTTTTTA
1 TTTATT-ATTA-TTTTAA
10565872 TTTATTATTATTTTA
1 TTTATTATTATTTTA
10565887 TAATAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 4 0.14
17 4 0.14
18 18 0.62
19 3 0.10
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (16 bp):
TTTATTATTATTTTAA
Found at i:10566527 original size:17 final size:16
Alignment explanation
Indices: 10566505--10566536 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
10566495 TTTTTTTATA
10566505 TTGTATTTTGGTATTTT
1 TTGTATTTT-GTATTTT
10566522 TTGTATTTTGTATTT
1 TTGTATTTTGTATTT
10566537 AATAATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.12, C:0.00, G:0.16, T:0.72
Consensus pattern (16 bp):
TTGTATTTTGTATTTT
Found at i:10568121 original size:16 final size:17
Alignment explanation
Indices: 10568093--10568127 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
10568083 TATATTCTTT
*
10568093 ATTTATATTCAAATAAA
1 ATTTATATTCAAACAAA
10568110 ATTTAT-TTCAAACAAA
1 ATTTATATTCAAACAAA
10568126 AT
1 AT
10568128 ATTGATTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTTATATTCAAACAAA
Found at i:10568181 original size:30 final size:30
Alignment explanation
Indices: 10568147--10568212 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
10568137 TGTTAAGAAC
10568147 TTATTT-ATATACAAATTAAAAATTAAAAGT
1 TTATTTGA-ATACAAATTAAAAATTAAAAGT
* **
10568177 TTATTTGAATATAAATTAAAGGTTAAAAGT
1 TTATTTGAATACAAATTAAAAATTAAAAGT
10568207 TTATTT
1 TTATTT
10568213 TGATTTAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
30 31 0.97
31 1 0.03
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.44
Consensus pattern (30 bp):
TTATTTGAATACAAATTAAAAATTAAAAGT
Found at i:10569129 original size:13 final size:13
Alignment explanation
Indices: 10569111--10569144 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
10569101 TTATATTTAA
10569111 ATTAAATTTAAAT
1 ATTAAATTTAAAT
*
10569124 ATTAAATTTATAT
1 ATTAAATTTAAAT
*
10569137 ATAAAATT
1 ATTAAATT
10569145 CCAATCAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTAAATTTAAAT
Found at i:10569284 original size:21 final size:23
Alignment explanation
Indices: 10569259--10569309 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
10569249 TTTTATATTT
*
10569259 AAATTTATT-TAATAATAT-TAA
1 AAATTTATTAAAATAATATATAA
10569280 AAATTATATTAAAATAATATATAA
1 AAATT-TATTAAAATAATATATAA
*
10569304 ATATTT
1 AAATTT
10569310 TAAATTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 5 0.20
22 4 0.16
23 9 0.36
24 7 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AAATTTATTAAAATAATATATAA
Found at i:10569592 original size:26 final size:26
Alignment explanation
Indices: 10569562--10569614 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10569552 CTTCCAAGGT
*
10569562 GGACCCCACCAGCCCACCGCAAGGAG
1 GGACCCCACCAGCCCACCACAAGGAG
10569588 GGACCCCACCAGCCCACCACAAGGAG
1 GGACCCCACCAGCCCACCACAAGGAG
10569614 G
1 G
10569615 AAAAAATGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.45, G:0.26, T:0.00
Consensus pattern (26 bp):
GGACCCCACCAGCCCACCACAAGGAG
Found at i:10571619 original size:88 final size:89
Alignment explanation
Indices: 10571485--10571663 Score: 335
Period size: 88 Copynumber: 2.0 Consensus size: 89
10571475 TAATAAATTT
10571485 AAAATTTATTATTTTATTTTTAAAAATATTATATTAAATTAATATATAAAAATAAAAA-TTTAAA
1 AAAATTTATTATTTTATTTTTAAAAATATTATATTAAATTAATATAT-AAAATAAAAATTTTAAA
10571549 TTTCATAAATAAATAAATCAAATCA
65 TTTCATAAATAAATAAATCAAATCA
10571574 AAAATTTATTATTTTATTTTT-AAAATATTATATTAAATTAATATATAAAATAAAAATTTTAAAT
1 AAAATTTATTATTTTATTTTTAAAAATATTATATTAAATTAATATATAAAATAAAAATTTTAAAT
10571638 TTCATAAATAAATAAATCAAATCA
66 TTCATAAATAAATAAATCAAATCA
10571662 AA
1 AA
10571664 CAAATAAAAT
Statistics
Matches: 89, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
87 10 0.11
88 58 0.65
89 21 0.24
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (89 bp):
AAAATTTATTATTTTATTTTTAAAAATATTATATTAAATTAATATATAAAATAAAAATTTTAAAT
TTCATAAATAAATAAATCAAATCA
Found at i:10571710 original size:32 final size:33
Alignment explanation
Indices: 10571650--10571743 Score: 108
Period size: 32 Copynumber: 3.0 Consensus size: 33
10571640 CATAAATAAA
*
10571650 TAAA-TCAAATCAAA-CAAAT-AAAATTTAATT
1 TAAATTCAAATCAAATCATATAAAAATTTAATT
10571680 T-AATTCAAATCAAATCATATAAAAATTTAATT
1 TAAATTCAAATCAAATCATATAAAAATTTAATT
* * *
10571712 TAAATTTAAATAAAATTATA-AAAAATTATAAT
1 TAAATTCAAATCAAATCATATAAAAATT-TAAT
10571744 ATTATATAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
29 2 0.04
30 11 0.20
31 4 0.07
32 19 0.35
33 19 0.35
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (33 bp):
TAAATTCAAATCAAATCATATAAAAATTTAATT
Found at i:10572119 original size:12 final size:12
Alignment explanation
Indices: 10572088--10572158 Score: 63
Period size: 12 Copynumber: 5.8 Consensus size: 12
10572078 CTATAGTTAT
*
10572088 TTTATATAAAAA
1 TTTATATTAAAA
10572100 TTCGTATATTAAAA
1 TT--TATATTAAAA
* *
10572114 TTTATATTATAT
1 TTTATATTAAAA
10572126 TTTATA-TAAAA
1 TTTATATTAAAA
* * *
10572137 ATTATATCATAA
1 TTTATATTAAAA
10572149 TTTATATTAA
1 TTTATATTAA
10572159 TATAAAATAT
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
11 8 0.18
12 26 0.58
14 11 0.24
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (12 bp):
TTTATATTAAAA
Found at i:10572141 original size:23 final size:23
Alignment explanation
Indices: 10572104--10572155 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
10572094 TAAAAATTCG
* * *
10572104 TATATTAAAATTTATATTATATTT
1 TATA-TAAAAATTATATCATAATT
10572128 TATATAAAAATTATATCATAATT
1 TATATAAAAATTATATCATAATT
10572151 TATAT
1 TATAT
10572156 TAATATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
TATATAAAAATTATATCATAATT
Found at i:10574012 original size:23 final size:23
Alignment explanation
Indices: 10573964--10574015 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
10573954 ACGATTCACA
*
10573964 TTAATTTATGAAATATTATTTAT
1 TTAATTTATGAAATATTATATAT
* *
10573987 TTAATTTATTAAATTTTATA-AT
1 TTAATTTATGAAATATTATATAT
*
10574009 TTTATTT
1 TTAATTT
10574016 TATAAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (23 bp):
TTAATTTATGAAATATTATATAT
Found at i:10574356 original size:23 final size:23
Alignment explanation
Indices: 10574308--10574366 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
10574298 ACGATTTATA
*
10574308 TTAATTTATAAAATATTATTTGT
1 TTAATTTATAAAATATTATATGT
* *
10574331 TTAATTTATTAAATTTTATAAT-T
1 TTAATTTATAAAATATTAT-ATGT
10574354 TT-ATTTCATAAAA
1 TTAATTT-ATAAAA
10574367 AATATTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 4 0.13
23 25 0.83
24 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
TTAATTTATAAAATATTATATGT
Found at i:10574486 original size:344 final size:343
Alignment explanation
Indices: 10573846--10574535 Score: 1067
Period size: 344 Copynumber: 2.0 Consensus size: 343
10573836 TTGATATAAG
* *
10573846 ATTCATAACTTTTTTTTATGATATGAAATTCTCCTTCATTCTAACAATGACTCATCAAATTTGAT
1 ATTCATAACTTTTTTCTATGATATGAAATTCTCCTTCATTCTAACAATAACTCATCAAATTTGAT
* * * * *
10573911 GATACGTTATTAGTACCTAAAATTAATTATAATATAAAAAATTACGATTCACATTAATTTATGAA
66 GATACATCATTAATACCTAAAATTAATTATAATATAAAAAATCACGATTCACATTAATTTATAAA
* *
10573976 ATATTATTTATTTAATTTATTAAATTTTATAATTTTATTTTATAAAAAATATCTTGTAAATTAAA
131 ATATTATTTATTTAATTTATTAAATTTTATAATTTTATTTCATAAAAAATATCTTATAAATTAAA
10574041 AGTGACGTATACATTTACGTTTCAACATCAACTTTAATTCATAACCAACGTAAAATTCACGATTC
196 AGTGACGTATACATTTACGTTTCAACATCAACTTTAATTCATAACCAACGTAAAATTCACGATTC
* * * *
10574106 CTCTCCGAGCCCGTGACATTTGGCTTGGTTAACTGAATGTTACGTGTAGAATTTGGAGTTCATTT
261 CTCTCCGAGACCGTGACATTTGGCTTGGTCAACTGAATGTTACGTATAGAATTTGGAATTCATTT
10574171 GACAACAAGATTCCTGCT
326 GACAACAAGATTCCTGCT
* * **
10574189 ATTCATACCTTTTTTCTATGATATGAAA-TCTTCCTTCATTTTAACAATAACTCATCAGGGTTTG
1 ATTCATAACTTTTTTCTATGATATGAAATTC-TCCTTCATTCTAACAATAACTCATCA-AATTTG
* * * * * * *
10574253 ATGATATATCATTAATATCTAAAATTAATTATAATTTTAAATATCACGATTTATATTAATTTATA
64 ATGATACATCATTAATACCTAAAATTAATTATAATATAAAAAATCACGATTCACATTAATTTATA
* * *
10574318 AAATATTATTTGTTTAATTTATTAAATTTTATAATTTTATTTCATAAAAAATATTTTATAAGTTA
129 AAATATTATTTATTTAATTTATTAAATTTTATAATTTTATTTCATAAAAAATATCTTATAAATTA
* * *
10574383 AAAGTGATGTATACATTTATGTTTCAACATCAACTTTAATTCATAACCAACGTAAACTTCACGAT
194 AAAGTGACGTATACATTTACGTTTCAACATCAACTTTAATTCATAACCAACGTAAAATTCACGAT
*
10574448 TCCTCTCCGAGACCGTGACATTTGTCTTGGTCAACTGAATGTTACGTATAGAATTTGGAATTCAT
259 TCCTCTCCGAGACCGTGACATTTGGCTTGGTCAACTGAATGTTACGTATAGAATTTGGAATTCAT
*
10574513 TTGATAACAAGATTCCTGCT
324 TTGACAACAAGATTCCTGCT
10574533 ATT
1 ATT
10574536 TGCATTAGAC
Statistics
Matches: 313, Mismatches: 32, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
342 2 0.01
343 50 0.16
344 261 0.83
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (343 bp):
ATTCATAACTTTTTTCTATGATATGAAATTCTCCTTCATTCTAACAATAACTCATCAAATTTGAT
GATACATCATTAATACCTAAAATTAATTATAATATAAAAAATCACGATTCACATTAATTTATAAA
ATATTATTTATTTAATTTATTAAATTTTATAATTTTATTTCATAAAAAATATCTTATAAATTAAA
AGTGACGTATACATTTACGTTTCAACATCAACTTTAATTCATAACCAACGTAAAATTCACGATTC
CTCTCCGAGACCGTGACATTTGGCTTGGTCAACTGAATGTTACGTATAGAATTTGGAATTCATTT
GACAACAAGATTCCTGCT
Found at i:10577231 original size:16 final size:16
Alignment explanation
Indices: 10577210--10577244 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
10577200 AAAACGAGAC
10577210 AATAATAT-AATATAAA
1 AATAATATAAAT-TAAA
10577226 AATAATATAAATTAAA
1 AATAATATAAATTAAA
10577242 AAT
1 AAT
10577245 TAAATGATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AATAATATAAATTAAA
Found at i:10577278 original size:21 final size:20
Alignment explanation
Indices: 10577254--10577310 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 20
10577244 TTAAATGATC
10577254 TAAAATTTTGATTAAAAATTA
1 TAAAATTTTGATTAAAAA-TA
* *
10577275 TAAAAAATTTG-GTAAAAATA
1 T-AAAATTTTGATTAAAAATA
10577295 TAAATATTTTGCATTA
1 TAAA-ATTTTG-ATTA
10577311 TCCTATCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
19 3 0.11
20 8 0.29
21 7 0.25
22 10 0.36
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (20 bp):
TAAAATTTTGATTAAAAATA
Found at i:10577459 original size:10 final size:10
Alignment explanation
Indices: 10577444--10577486 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
10577434 TATTAAAATT
10577444 TATATATTTA
1 TATATATTTA
10577454 TATATATCTTA
1 TATATAT-TTA
10577465 TATCATAATTTA
1 TAT-AT-ATTTA
*
10577477 TATTTATTTA
1 TATATATTTA
10577487 AAAATATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
10 12 0.41
11 7 0.24
12 8 0.28
13 2 0.07
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (10 bp):
TATATATTTA
Found at i:10583133 original size:16 final size:15
Alignment explanation
Indices: 10583113--10583183 Score: 58
Period size: 16 Copynumber: 4.7 Consensus size: 15
10583103 TATATATTAT
10583113 TTTTATTTAATTTTA
1 TTTTATTTAATTTTA
*
10583128 TATTTATAT-ATTTGTA
1 T-TTTATTTAATTT-TA
*
10583144 TTTTA--TATTTTTA
1 TTTTATTTAATTTTA
*
10583157 TAATTATTTAATTTTA
1 T-TTTATTTAATTTTA
10583173 TTTATATTTAA
1 TTT-TATTTAA
10583184 AAATAATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
13 4 0.09
14 6 0.14
15 10 0.23
16 24 0.55
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (15 bp):
TTTTATTTAATTTTA
Found at i:10583155 original size:29 final size:28
Alignment explanation
Indices: 10583113--10583181 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
10583103 TATATATTAT
*
10583113 TTTTATTTA-A-TTTTATATTTATAT-A
1 TTTTATTTATATTTTTATAATTATATAA
*
10583138 TTTGTATTTTATATTTTTATAATTATTTAA
1 TTT-TA-TTTATATTTTTATAATTATATAA
10583168 TTTTATTTATATTT
1 TTTTATTTATATTT
10583182 AAAAATAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
25 3 0.08
26 2 0.05
27 4 0.11
28 10 0.27
29 14 0.38
30 4 0.11
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (28 bp):
TTTTATTTATATTTTTATAATTATATAA
Found at i:10584036 original size:21 final size:22
Alignment explanation
Indices: 10583997--10584037 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
10583987 GATTTAAAAT
* *
10583997 TTTAATAAAAATTATAAATAAA
1 TTTAATAAAAATAAAAAATAAA
10584019 TTTAAT-AAAATAAAAAATA
1 TTTAATAAAAATAAAAAATA
10584038 TATTATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
TTTAATAAAAATAAAAAATAAA
Found at i:10584125 original size:33 final size:32
Alignment explanation
Indices: 10584088--10584149 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
10584078 TATATAAAAT
* *
10584088 ATAATATAAATACATAAATTATCAATATTTTAC
1 ATAATACAAATACACAAATTATCAA-ATTTTAC
* *
10584121 ATAATACATATATACAAATTATCAAATTT
1 ATAATACAAATACACAAATTATCAAATTT
10584150 ATTTATTGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 4 0.16
33 21 0.84
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (32 bp):
ATAATACAAATACACAAATTATCAAATTTTAC
Found at i:10584901 original size:35 final size:34
Alignment explanation
Indices: 10584862--10584933 Score: 85
Period size: 33 Copynumber: 2.1 Consensus size: 34
10584852 TATATGTATT
10584862 AAATTTTA-TAAAATAAAAATAATAATTTTATATAA
1 AAATTTTATTAAAAT-AAAATAA-AATTTTATATAA
* * *
10584897 AAA-TTTATTTAAATATATTAAAATTTTATATAA
1 AAATTTTATTAAAATAAAATAAAATTTTATATAA
10584930 AAAT
1 AAAT
10584934 AAAAAATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
33 15 0.47
34 9 0.28
35 8 0.25
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (34 bp):
AAATTTTATTAAAATAAAATAAAATTTTATATAA
Found at i:10584913 original size:20 final size:20
Alignment explanation
Indices: 10584890--10584949 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
10584880 ATAATAATTT
10584890 TATATAAAAATTTATTTAAA
1 TATATAAAAATTTATTTAAA
* *
10584910 TATATTAAAATTTTATATAAA
1 TATA-TAAAAATTTATTTAAA
* *
10584931 AATA-AAAAATTAATTTAAA
1 TATATAAAAATTTATTTAAA
10584950 AATTAATAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 12 0.36
20 4 0.12
21 17 0.52
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TATATAAAAATTTATTTAAA
Found at i:10584949 original size:13 final size:12
Alignment explanation
Indices: 10584933--10584979 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
10584923 TATATAAAAA
10584933 TAAAAAATTAAT
1 TAAAAAATTAAT
*
10584945 TTAAAAATTAA-
1 TAAAAAATTAAT
10584956 TAAATAAATTAAAT
1 TAAA-AAATT-AAT
10584970 TAATAAAATT
1 TAA-AAAATT
10584980 TGATTTGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
11 3 0.10
12 15 0.52
13 2 0.07
14 8 0.28
15 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAAAAATTAAT
Found at i:10584967 original size:19 final size:20
Alignment explanation
Indices: 10584927--10584976 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 20
10584917 AAATTTTATA
* *
10584927 TAAAAA-TAAAAAATTAATT
1 TAAAAATTAATAAATTAAAT
10584946 TAAAAATTAATAAA-TAAAT
1 TAAAAATTAATAAATTAAAT
10584965 T--AAATTAATAAA
1 TAAAAATTAATAAA
10584977 ATTTGATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 11 0.39
19 11 0.39
20 6 0.21
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
TAAAAATTAATAAATTAAAT
Found at i:10585033 original size:12 final size:11
Alignment explanation
Indices: 10585001--10585038 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
10584991 AAATCATATA
10585001 AAAATTTAAAT
1 AAAATTTAAAT
*
10585012 CAAATTTAAAT
1 AAAATTTAAAT
*
10585023 AAAATTTTAA-
1 AAAATTTAAAT
10585033 AAAATT
1 AAAATT
10585039 ATAATATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 6 0.25
11 18 0.75
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (11 bp):
AAAATTTAAAT
Found at i:10591315 original size:10 final size:9
Alignment explanation
Indices: 10591291--10591334 Score: 54
Period size: 10 Copynumber: 4.7 Consensus size: 9
10591281 TATTTTTATT
10591291 TTATAAAAA
1 TTATAAAAA
10591300 TT-TAAAAA
1 TTATAAAAA
10591308 TATATAAAAA
1 T-TATAAAAA
10591318 TTAATAAAAA
1 TT-ATAAAAA
10591328 TATATAA
1 T-TATAA
10591335 TTCGGTTCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 7 0.23
9 4 0.13
10 19 0.61
11 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:10591315 original size:18 final size:19
Alignment explanation
Indices: 10591292--10591334 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
10591282 ATTTTTATTT
10591292 TATAAAAATT-TAAAAATA
1 TATAAAAATTATAAAAATA
10591310 TATAAAAATTAATAAAAATA
1 TATAAAAATT-ATAAAAATA
10591330 TATAA
1 TATAA
10591335 TTCGGTTCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.43
20 13 0.57
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
TATAAAAATTATAAAAATA
Found at i:10592110 original size:33 final size:32
Alignment explanation
Indices: 10592073--10592134 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
10592063 AAAGAAAAAC
10592073 AAAGAAAAA-AAGAACA-CACAAACATAAAAAATT
1 AAAGAAAAATAAG-ACAGCA-AAA-ATAAAAAATT
10592106 AAAGAAAAATAAGACAGCAAAAATAAAAA
1 AAAGAAAAATAAGACAGCAAAAATAAAAA
10592135 CCAATAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
32 7 0.26
33 15 0.56
34 5 0.19
ACGTcount: A:0.74, C:0.10, G:0.08, T:0.08
Consensus pattern (32 bp):
AAAGAAAAATAAGACAGCAAAAATAAAAAATT
Found at i:10593626 original size:3 final size:3
Alignment explanation
Indices: 10593618--10593651 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
10593608 AAACAAACAG
10593618 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
10593652 AAACAACCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:10599594 original size:16 final size:17
Alignment explanation
Indices: 10599560--10599592 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10599550 AATTGAATAA
10599560 AATTTTATATTATTTTT
1 AATTTTATATTATTTTT
10599577 AATTTT-TATGTATTTT
1 AATTTTATAT-TATTTT
10599593 AAAAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
AATTTTATATTATTTTT
Found at i:10599735 original size:21 final size:22
Alignment explanation
Indices: 10599684--10599735 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
10599674 ATAATTCATG
*
10599684 TATTTATAGTATAAAATATTTT
1 TATTTATATTATAAAATATTTT
**
10599706 TATAAATATTA-AAAAT-TTATT
1 TATTTATATTATAAAATATT-TT
10599727 TATTTATAT
1 TATTTATAT
10599736 CGTGTTTTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
20 2 0.08
21 14 0.58
22 8 0.33
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TATTTATATTATAAAATATTTT
Found at i:10602317 original size:36 final size:36
Alignment explanation
Indices: 10602277--10602392 Score: 128
Period size: 36 Copynumber: 3.2 Consensus size: 36
10602267 CTGCTGACAG
*
10602277 AGCTGCTGATTGAGCTGCCACTGGAGTTGCTGCCGA
1 AGCTGCTGATTGAGCTGCCGCTGGAGTTGCTGCCGA
* * * * *
10602313 AGCTGCTG-CTGTAGTTGCCGCTGGAGCTGCTGACGG
1 AGCTGCTGATTG-AGCTGCCGCTGGAGTTGCTGCCGA
* *
10602349 AGCTGCTGATAGAGCTGCCGCTGGAGTTGCCGCCGGA
1 AGCTGCTGATTGAGCTGCCGCTGGAGTTGCTGCC-GA
10602386 A-CTGCTG
1 AGCTGCTG
10602393 CTGGTGCTGC
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
35 2 0.03
36 59 0.92
37 3 0.05
ACGTcount: A:0.15, C:0.26, G:0.36, T:0.23
Consensus pattern (36 bp):
AGCTGCTGATTGAGCTGCCGCTGGAGTTGCTGCCGA
Found at i:10602350 original size:12 final size:12
Alignment explanation
Indices: 10602263--10602357 Score: 52
Period size: 12 Copynumber: 7.9 Consensus size: 12
10602253 ACTTGCTGTT
10602263 GGAGCTGCTGAC
1 GGAGCTGCTGAC
* *
10602275 AGAGCTGCTGAT
1 GGAGCTGCTGAC
* *
10602287 TGAGCTGC-CAC
1 GGAGCTGCTGAC
* *
10602298 TGGAGTTGCTGCC
1 -GGAGCTGCTGAC
*
10602311 GAAGCTGCTG-C
1 GGAGCTGCTGAC
* * *
10602322 TGTAGTTGCCG-C
1 -GGAGCTGCTGAC
10602334 TGGAGCTGCTGAC
1 -GGAGCTGCTGAC
10602347 GGAGCTGCTGA
1 GGAGCTGCTGA
10602358 TAGAGCTGCC
Statistics
Matches: 62, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
11 2 0.03
12 58 0.94
13 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.37, T:0.23
Consensus pattern (12 bp):
GGAGCTGCTGAC
Found at i:10602379 original size:12 final size:12
Alignment explanation
Indices: 10602288--10602402 Score: 61
Period size: 12 Copynumber: 9.6 Consensus size: 12
10602278 GCTGCTGATT
*
10602288 GAGCTGCCACTG
1 GAGCTGCCGCTG
* * *
10602300 GAGTTGCTGCCG
1 GAGCTGCCGCTG
* *
10602312 AAGCTGCTGCTG
1 GAGCTGCCGCTG
* *
10602324 TAGTTGCCGCTG
1 GAGCTGCCGCTG
*
10602336 GAGCTGCTGAC-G
1 GAGCTGCCG-CTG
* * *
10602348 GAGCTGCTGATA
1 GAGCTGCCGCTG
10602360 GAGCTGCCGCTG
1 GAGCTGCCGCTG
* *
10602372 GAGTTGCCGCCG
1 GAGCTGCCGCTG
* *
10602384 GAACTGCTGCTG
1 GAGCTGCCGCTG
*
10602396 GTGCTGC
1 GAGCTGC
10602403 TCCAGAAGAT
Statistics
Matches: 75, Mismatches: 26, Indels: 4
0.71 0.25 0.04
Matches are distributed among these distances:
12 74 0.99
13 1 0.01
ACGTcount: A:0.13, C:0.27, G:0.37, T:0.23
Consensus pattern (12 bp):
GAGCTGCCGCTG
Found at i:10602391 original size:72 final size:72
Alignment explanation
Indices: 10602262--10602395 Score: 216
Period size: 72 Copynumber: 1.9 Consensus size: 72
10602252 TACTTGCTGT
* *
10602262 TGGAGCTGCTGACAGAGCTGCTGATTGAGCTGCCACTGGAGTTGCTGCCGAAGCTGCTGCTGTAG
1 TGGAGCTGCTGACAGAGCTGCTGATAGAGCTGCCACTGGAGTTGCCGCCGAAGCTGCTGCTGTAG
10602327 TTGCCGC
66 TTGCCGC
* *
10602334 TGGAGCTGCTGACGGAGCTGCTGATAGAGCTGCCGCTGGAGTTGCCGCCGGAA-CTGCTGCTG
1 TGGAGCTGCTGACAGAGCTGCTGATAGAGCTGCCACTGGAGTTGCCGCC-GAAGCTGCTGCTG
10602396 GTGCTGCTCC
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
72 54 0.95
73 3 0.05
ACGTcount: A:0.15, C:0.25, G:0.37, T:0.23
Consensus pattern (72 bp):
TGGAGCTGCTGACAGAGCTGCTGATAGAGCTGCCACTGGAGTTGCCGCCGAAGCTGCTGCTGTAG
TTGCCGC
Found at i:10603460 original size:24 final size:24
Alignment explanation
Indices: 10603433--10603493 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
10603423 TGGAGCAGCA
* *
10603433 CCAGCAGCAGTTCCGACGGCAACT
1 CCAGCGGCAGCTCCGACGGCAACT
* *
10603457 CCAGCGGCAGCTCTGTCGGCAACT
1 CCAGCGGCAGCTCCGACGGCAACT
10603481 CCAGCGGCAGCTC
1 CCAGCGGCAGCTC
10603494 TATCAGCAGC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.20, C:0.39, G:0.28, T:0.13
Consensus pattern (24 bp):
CCAGCGGCAGCTCCGACGGCAACT
Found at i:10603494 original size:24 final size:24
Alignment explanation
Indices: 10603449--10603509 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
10603439 GCAGTTCCGA
*
10603449 CGGCAACTCCAGCGGCAGCTCTGT
1 CGGCAACTCCAGCGGCAGCTCTAT
10603473 CGGCAACTCCAGCGGCAGCTCTAT
1 CGGCAACTCCAGCGGCAGCTCTAT
* *
10603497 CAGCAGCTCCAGC
1 CGGCAACTCCAGC
10603510 AGCAAGTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.20, C:0.39, G:0.26, T:0.15
Consensus pattern (24 bp):
CGGCAACTCCAGCGGCAGCTCTAT
Found at i:10603622 original size:63 final size:67
Alignment explanation
Indices: 10603499--10603626 Score: 174
Period size: 63 Copynumber: 2.0 Consensus size: 67
10603489 AGCTCTATCA
* **
10603499 GCAGCTCCAGCAGCAAGTAAACCCTTCTAATAGTATGAATGTTCTGATTTAGTAGCTGTAACAGA
1 GCAGCTCCAGCAGCAAATAAACCCTTCTAATAGTATGAATGAACTGATTTAGTAGCTGTAACAGA
10603564 CT
66 CT
* * *
10603566 GCAGCTCCAGCAGCAAATAAA-TC-T-TATTAGTA-GAATGAACTGATTTAGTAGTTGTAACAGA
1 GCAGCTCCAGCAGCAAATAAACCCTTCTAATAGTATGAATGAACTGATTTAGTAGCTGTAACAGA
10603627 TTGTGAGATA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
63 26 0.47
64 7 0.13
65 1 0.02
66 1 0.02
67 20 0.36
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (67 bp):
GCAGCTCCAGCAGCAAATAAACCCTTCTAATAGTATGAATGAACTGATTTAGTAGCTGTAACAGA
CT
Found at i:10605750 original size:6 final size:6
Alignment explanation
Indices: 10605741--10605773 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
10605731 AATTAAAAAT
*
10605741 ATAGTA ATAGTA ATAATA ATAGTA ATAGTA ATA
1 ATAGTA ATAGTA ATAGTA ATAGTA ATAGTA ATA
10605774 ATGAGCTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (6 bp):
ATAGTA
Found at i:10605764 original size:18 final size:18
Alignment explanation
Indices: 10605741--10605775 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
10605731 AATTAAAAAT
10605741 ATAGTAATAGTAATAATA
1 ATAGTAATAGTAATAATA
10605759 ATAGTAATAGTAATAAT
1 ATAGTAATAGTAATAAT
10605776 GAGCTTTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.34
Consensus pattern (18 bp):
ATAGTAATAGTAATAATA
Found at i:10608596 original size:11 final size:11
Alignment explanation
Indices: 10608580--10608606 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10608570 AATGTCAATG
10608580 ATATTCTAATA
1 ATATTCTAATA
10608591 ATATTCTAATA
1 ATATTCTAATA
10608602 ATATT
1 ATATT
10608607 TCATATTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (11 bp):
ATATTCTAATA
Found at i:10608638 original size:11 final size:11
Alignment explanation
Indices: 10608622--10608647 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
10608612 TTGATGCTAT
10608622 TATTTTAGTAA
1 TATTTTAGTAA
10608633 TATTTTAGTAA
1 TATTTTAGTAA
10608644 TATT
1 TATT
10608648 ATAGATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (11 bp):
TATTTTAGTAA
Found at i:10608696 original size:12 final size:12
Alignment explanation
Indices: 10608652--10608703 Score: 65
Period size: 12 Copynumber: 4.6 Consensus size: 12
10608642 AATATTATAG
10608652 ATTGATTT-GAT
1 ATTGATTTAGAT
*
10608663 ATTGATTTAGAG
1 ATTGATTTAGAT
*
10608675 AAT-A-TTAGAT
1 ATTGATTTAGAT
10608685 ATTGATTTAGAT
1 ATTGATTTAGAT
10608697 ATTGATT
1 ATTGATT
10608704 AGGTGATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
10 7 0.21
11 10 0.29
12 17 0.50
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (12 bp):
ATTGATTTAGAT
Found at i:10618758 original size:16 final size:17
Alignment explanation
Indices: 10618737--10618769 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10618727 GAACATAATA
*
10618737 TATTTATTATAT-ATAT
1 TATTTATAATATGATAT
10618753 TATTTATAATATGATAT
1 TATTTATAATATGATAT
10618770 AATTAACATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
TATTTATAATATGATAT
Found at i:10618881 original size:16 final size:16
Alignment explanation
Indices: 10618860--10618914 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 16
10618850 TGATTAATTT
10618860 ATTTATTTAAATAAAA
1 ATTTATTTAAATAAAA
*
10618876 ATTTATTTAAAT--TA
1 ATTTATTTAAATAAAA
10618890 A--TATTTAAATAAAA
1 ATTTATTTAAATAAAA
*
10618904 AATTATTTAAA
1 ATTTATTTAAA
10618915 AATAAATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
12 9 0.27
14 4 0.12
16 20 0.61
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTTATTTAAATAAAA
Found at i:10622772 original size:37 final size:38
Alignment explanation
Indices: 10622703--10622779 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 38
10622693 TGGCTATGAT
*
10622703 TATTGGAGGAGATAAAGAATTGACTCACAACGAATCAC
1 TATTGGAGGAGATAAAGAATTGACTCAAAACGAATCAC
10622741 TATTGGAGGAGAT-AAGAATTGACTCAAAACGAATCAC
1 TATTGGAGGAGATAAAGAATTGACTCAAAACGAATCAC
10622778 TA
1 TA
10622780 CTGTTTATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 25 0.66
38 13 0.34
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.22
Consensus pattern (38 bp):
TATTGGAGGAGATAAAGAATTGACTCAAAACGAATCAC
Found at i:10627502 original size:8 final size:8
Alignment explanation
Indices: 10627481--10627513 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
10627471 AGGAAGTTTC
10627481 GAAAG-GA
1 GAAAGAGA
*
10627488 GATAGAGA
1 GAAAGAGA
10627496 GAAAGAGA
1 GAAAGAGA
10627504 GAAAGAGA
1 GAAAGAGA
10627512 GA
1 GA
10627514 GAGATGTAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
7 4 0.17
8 19 0.83
ACGTcount: A:0.58, C:0.00, G:0.39, T:0.03
Consensus pattern (8 bp):
GAAAGAGA
Found at i:10627819 original size:166 final size:167
Alignment explanation
Indices: 10627620--10627932 Score: 499
Period size: 166 Copynumber: 1.9 Consensus size: 167
10627610 ATATTTATAT
*
10627620 TATATTTATATAAAAGTTATTATTATTAAAATTTTAAATTGTATAATTTTTA-TATTTTTTATTT
1 TATATTTATATAAAAGTTATTATTATAAAAATTTTAAATTGTATAATTTTTACTATTTTTTATTT
* ** *
10627684 ATAATCATATCGTATTATTACATTATATTTTAAATTAACGAG-AAAAAATTTA-CTTTTTTTATT
66 ATAATCATATC-TATTATTACATTATATTTGAAATTAACGAGAAAAAAAAATATC-TTTTTTACT
10627747 TTAAAATTAGATGAGAATTATGTAAAATATTAAAATTTA
129 TTAAAATTAGATGAGAATTATGTAAAATATTAAAATTTA
*
10627786 TATATTTATATAACAA-TTATTATTATAAAAATTTTAAATTGTATAATTTTTACTTTTTTTTATT
1 TATATTTATATAA-AAGTTATTATTATAAAAATTTTAAATTGTATAATTTTTACTATTTTTTATT
*
10627850 TATAATCATATCTATTATTATATTATATTTGAAATTAACGAGAAAAAAAAATATCTTTTTTACTT
65 TATAATCATATCTATTATTACATTATATTTGAAATTAACGAGAAAAAAAAATATCTTTTTTACTT
*
10627915 TAAAATTAGGTGAGAATT
130 TAAAATTAGATGAGAATT
10627933 TTTCTAACTG
Statistics
Matches: 135, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
166 76 0.56
167 58 0.43
168 1 0.01
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (167 bp):
TATATTTATATAAAAGTTATTATTATAAAAATTTTAAATTGTATAATTTTTACTATTTTTTATTT
ATAATCATATCTATTATTACATTATATTTGAAATTAACGAGAAAAAAAAATATCTTTTTTACTTT
AAAATTAGATGAGAATTATGTAAAATATTAAAATTTA
Found at i:10636051 original size:2 final size:2
Alignment explanation
Indices: 10636046--10636083 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
10636036 AAAAAGAATC
*
10636046 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10636084 TTTCTACATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
TA
Done.