Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 55 of 147
Found at i:10636598 original size:13 final size:13
Alignment explanation
Indices: 10636540--10636599 Score: 53
Period size: 13 Copynumber: 5.2 Consensus size: 13
10636530 AATATTATTT
10636540 TTAAATAT-AAAA
1 TTAAATATAAAAA
10636552 TTAAAT-T--AAA
1 TTAAATATAAAAA
*
10636562 -TATATATAAAAA
1 TTAAATATAAAAA
*
10636574 --AAATATATAAA
1 TTAAATATAAAAA
10636585 TTAAATATAAAAA
1 TTAAATATAAAAA
10636598 TT
1 TT
10636600 TTAAAAAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 4 0.10
10 4 0.10
11 10 0.26
12 9 0.23
13 12 0.31
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
TTAAATATAAAAA
Found at i:10641800 original size:19 final size:18
Alignment explanation
Indices: 10641772--10641822 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
10641762 GAATAACTTG
10641772 TAAA-TTTAATTAAGTTTT
1 TAAATTTTAATTAA-TTTT
10641790 TAAATTTTAA-TATATTTT
1 TAAATTTTAATTA-ATTTT
*
10641808 TATTATTTTAATTAA
1 TA-AATTTTAATTAA
10641823 AAAATTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 12 0.43
19 14 0.50
20 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TAAATTTTAATTAATTTT
Found at i:10642643 original size:74 final size:74
Alignment explanation
Indices: 10642560--10642705 Score: 172
Period size: 74 Copynumber: 2.0 Consensus size: 74
10642550 CATAAATGTA
10642560 TTTTCGAAAAA-CTTTAAATACTTT-C-AGAAATCAATTTGCAAAAAGCTTTTAAGATTTTCAAA
1 TTTTCGAAAAATCTTTAAA-ACTTTGCGA-AAATCAATTTGCAAAAA-CTTTTAAGATTTTCAAA
10642622 AATTTATTTTCG
63 AATTTATTTTCG
* ** * ** * *
10642634 TTTTCGAAAAATCTTTTAAGGTTTGCGAAAATGAATTTTTAAAAATTTTTAAGATTTTCAAAAGT
1 TTTTCGAAAAATCTTTAAAACTTTGCGAAAATCAATTTGCAAAAACTTTTAAGATTTTCAAAAAT
10642699 TTATTTT
66 TTATTTT
10642706 TGAAAAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
74 39 0.64
75 21 0.34
76 1 0.02
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.44
Consensus pattern (74 bp):
TTTTCGAAAAATCTTTAAAACTTTGCGAAAATCAATTTGCAAAAACTTTTAAGATTTTCAAAAAT
TTATTTTCG
Found at i:10642657 original size:21 final size:21
Alignment explanation
Indices: 10642599--10642664 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
10642589 ATCAATTTGC
* *
10642599 AAAAAGCTTTTAAGATTTTC-
1 AAAAATCTTTTAAGGTTTTCG
***
10642619 AAAAAT-TTATTTTCGTTTTCG
1 AAAAATCTT-TTAAGGTTTTCG
*
10642640 AAAAATCTTTTAAGGTTTGCG
1 AAAAATCTTTTAAGGTTTTCG
10642661 AAAA
1 AAAA
10642665 TGAATTTTTA
Statistics
Matches: 34, Mismatches: 9, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
19 2 0.06
20 12 0.35
21 18 0.53
22 2 0.06
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (21 bp):
AAAAATCTTTTAAGGTTTTCG
Found at i:10642778 original size:35 final size:36
Alignment explanation
Indices: 10642701--10642781 Score: 94
Period size: 34 Copynumber: 2.3 Consensus size: 36
10642691 TCAAAAGTTT
* * *
10642701 ATTTTTGAAAAATTTTACTTCCGAAAATATAACATA
1 ATTTTTTAAAAATTTCACTTCCAAAAATATAACATA
* * *
10642737 A-ATTTTAAAAA-TTCATTTCCAAAAATATATCATA
1 ATTTTTTAAAAATTTCACTTCCAAAAATATAACATA
10642771 ATTTTTTAAAA
1 ATTTTTTAAAA
10642782 TAAATTTTCA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
34 20 0.54
35 16 0.43
36 1 0.03
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.41
Consensus pattern (36 bp):
ATTTTTTAAAAATTTCACTTCCAAAAATATAACATA
Found at i:10645669 original size:121 final size:121
Alignment explanation
Indices: 10645455--10645672 Score: 375
Period size: 121 Copynumber: 1.8 Consensus size: 121
10645445 TACACACAAT
* *
10645455 TGATTAAACAGTTCTATGAGCAATTCCCATGTTTCAAAATTAAATCTTTTCAAGTAAAATTAAAT
1 TGATTAAACAGTTCTATGAGCAATACACATGTTTCAAAATTAAATCTTTTCAAGTAAAATTAAAT
*
10645520 GAATCAATCATAAACAATATCTAATTCAACATCCAATAAAGTCAAGTAGACTTGGC
66 AAATCAATCATAAACAATATCTAATTCAACATCCAATAAAGTCAAGTAGACTTGGC
* *
10645576 TGATTAAACAGTTCTATGAGCAATACACATGTTTCAAAATTAAATCTTTTCGAGTAAAATTACAT
1 TGATTAAACAGTTCTATGAGCAATACACATGTTTCAAAATTAAATCTTTTCAAGTAAAATTAAAT
10645641 AAATCAATCATCAAA-AATATCTAATTCAACAT
66 AAATCAATCAT-AAACAATATCTAATTCAACAT
10645673 TATCCATTAA
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
121 88 0.97
122 3 0.03
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (121 bp):
TGATTAAACAGTTCTATGAGCAATACACATGTTTCAAAATTAAATCTTTTCAAGTAAAATTAAAT
AAATCAATCATAAACAATATCTAATTCAACATCCAATAAAGTCAAGTAGACTTGGC
Found at i:10645739 original size:136 final size:139
Alignment explanation
Indices: 10645576--10646177 Score: 799
Period size: 144 Copynumber: 4.3 Consensus size: 139
10645566 TAGACTTGGC
*
10645576 TGATTAAACAGTTCTATGAGCAATACACATGTTTCAAAATTAAATCTTTTC-G-A-GTAAAATTA
1 TGATTAAACAGTTCTATGAGCAATACACATGTTTCAAAATCAAATCTTTTCAGAATGTAAAATTA
* * *
10645638 CATAAATCAATCATCAAAAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGTAAAGT
66 CATGAATCAATCATCAACAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGCAAAGT
*
10645703 AGATCCAGT
131 AGACCCAGT
*
10645712 TGATTAAACAGTTCTATAAGCAATACACATGTTTCAAAATCAAATCTTTTCAAGTAAAATTGTAA
1 TGATTAAACAGTTCTATGAGCAATACACATGTTTCAAAATCAAATCTTTTC-AG---AA-TGTAA
*
10645777 AATTACATGAATCAATCATCATCAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGT
61 AATTACATGAATCAATCATCAACAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAG-
*
10645842 C-AAGCAGACCCAGT
125 CAAAGTAGACCCAGT
* * *
10645856 TGATTAAACAATTCTATGAGCAATACACCTGTTTCAAAATCAAATATTTTCAAGTAAAATTGTAA
1 TGATTAAACAGTTCTATGAGCAATACACATGTTTCAAAATCAAATCTTTTC-AG---AA-TGTAA
* *
10645921 AATTACATGAATCAATAATCATCAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGC
61 AATTACATGAATCAATCATCAACAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGC
* *
10645986 CAAGTAGTCCCAGT
126 AAAGTAGACCCAGT
* *
10646000 TGATTAAACAGTTCTATGAGCAATA-ACCATGCTTCAAAATTAAATCTTTTC--AA-GTAAAATT
1 TGATTAAACAGTTCTATGAGCAATACA-CATGTTTCAAAATCAAATCTTTTCAGAATGTAAAATT
* *
10646061 ACATGAATCAATCATCAACAATATCCAATTCAACATTATCGATTAAGTTTTCCGAGAAAGCAAAG
65 ACATGAATCAATCATCAACAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGCAAAG
*
10646126 TTGACCCAGT
130 TAGACCCAGT
* * * **
10646136 TGATTAAACAGATC-ATGTAACAATACCCATAATTCAAAATCA
1 TGATTAAACAGTTCTATG-AGCAATACACATGTTTCAAAATCA
10646178 GTGATAGACC
Statistics
Matches: 420, Mismatches: 33, Indels: 26
0.88 0.07 0.05
Matches are distributed among these distances:
135 3 0.01
136 156 0.37
138 3 0.01
142 1 0.00
143 2 0.00
144 255 0.61
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (139 bp):
TGATTAAACAGTTCTATGAGCAATACACATGTTTCAAAATCAAATCTTTTCAGAATGTAAAATTA
CATGAATCAATCATCAACAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGCAAAGT
AGACCCAGT
Found at i:10646093 original size:280 final size:274
Alignment explanation
Indices: 10645576--10646145 Score: 790
Period size: 280 Copynumber: 2.0 Consensus size: 274
10645566 TAGACTTGGC
* * *
10645576 TGATTAAACAGTTCTATGAGCAATACACATGTTTCAAAATTAAATCTTTTCGAGTAAAATTACAT
1 TGATTAAACAATTCTATGAGCAATACACATGTTTCAAAATCAAATATTTTCGAGTAAAATTACAT
* *
10645641 AAATCAATCATCAAAAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGTAAAGTAGA
66 AAATCAATAATCAAAAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGCAAAGTAGA
*
10645706 TCCAGTTGATTAAACAGTTCTATAAGCAATACACATGTTTCAAAATCAAATCTTTTCAAGTAAAA
131 TCCAGTTGATTAAACAGTTCTATAAGCAATACACATGCTTCAAAATCAAATCTTTTC-----AAA
* *
10645771 TTGTAAAATTACATGAATCAATCATCATCAATATCTAATTCAACATTATCCATTAAGTTTTCCGA
191 -TGTAAAATTACATGAATCAATCATCAACAATATCCAATTCAACATTATCCATTAAGTTTTCCGA
10645836 GAAAGTC-AAGCAGACCCAGT
255 GAAAG-CAAAGCAGACCCAGT
*
10645856 TGATTAAACAATTCTATGAGCAATACACCTGTTTCAAAATCAAATATTTTCAAGTAAAATTGTAA
1 TGATTAAACAATTCTATGAGCAATACACATGTTTCAAAATCAAATATTTTC--G----A--GTAA
* **
10645921 AATTACATGAATCAATAATCATCAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGC
58 AATTACATAAATCAATAATCAAAAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGC
* * *
10645986 CAAGTAG-TCCCAGTTGATTAAACAGTTCTATGAGCAATA-ACCATGCTTCAAAATTAAATCTTT
123 AAAGTAGAT-CCAGTTGATTAAACAGTTCTATAAGCAATACA-CATGCTTCAAAATCAAATCTTT
*
10646049 TC-AA-GTAAAATTACATGAATCAATCATCAACAATATCCAATTCAACATTATCGATTAAGTTTT
186 TCAAATGTAAAATTACATGAATCAATCATCAACAATATCCAATTCAACATTATCCATTAAGTTTT
**
10646112 CCGAGAAAGCAAAGTTGACCCAGT
251 CCGAGAAAGCAAAGCAGACCCAGT
10646136 TGATTAAACA
1 TGATTAAACA
10646146 GATCATGTAA
Statistics
Matches: 261, Mismatches: 18, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
279 1 0.00
280 133 0.51
282 3 0.01
286 1 0.00
287 2 0.01
288 121 0.46
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.31
Consensus pattern (274 bp):
TGATTAAACAATTCTATGAGCAATACACATGTTTCAAAATCAAATATTTTCGAGTAAAATTACAT
AAATCAATAATCAAAAATATCTAATTCAACATTATCCATTAAGTTTTCCGAGAAAGCAAAGTAGA
TCCAGTTGATTAAACAGTTCTATAAGCAATACACATGCTTCAAAATCAAATCTTTTCAAATGTAA
AATTACATGAATCAATCATCAACAATATCCAATTCAACATTATCCATTAAGTTTTCCGAGAAAGC
AAAGCAGACCCAGT
Found at i:10653320 original size:29 final size:28
Alignment explanation
Indices: 10653287--10653341 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
10653277 TATAATTAAA
* *
10653287 AATTATTTAAATTTTTATTATTTTATTAT
1 AATTAATTAAATTTTTAAT-TTTTATTAT
*
10653316 AATTAATTAATTTTTTAATTTTTATT
1 AATTAATTAAATTTTTAATTTTTATT
10653342 TTGATAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (28 bp):
AATTAATTAAATTTTTAATTTTTATTAT
Found at i:10654491 original size:13 final size:13
Alignment explanation
Indices: 10654474--10654518 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
10654464 TTAATCGTAT
*
10654474 TATTTTTATATTT
1 TATTTTTATATTA
*
10654487 TATTTTTATATCA
1 TATTTTTATATTA
*
10654500 TATTATTATATTA
1 TATTTTTATATTA
10654513 TATTTT
1 TATTTT
10654519 AAATTATCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (13 bp):
TATTTTTATATTA
Found at i:10654505 original size:16 final size:15
Alignment explanation
Indices: 10654462--10654506 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 15
10654452 ATTATTAAAC
10654462 TTTTA-ATCGTATTAT
1 TTTTATATC-TATTAT
10654477 TTTTATAT-T-TTAT
1 TTTTATATCTATTAT
10654490 TTTTATATCATATTAT
1 TTTTATATC-TATTAT
10654506 T
1 T
10654507 ATATTATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 12 0.46
14 1 0.04
15 6 0.23
16 7 0.27
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (15 bp):
TTTTATATCTATTAT
Found at i:10659508 original size:21 final size:22
Alignment explanation
Indices: 10659482--10659525 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
10659472 TTATTTATAA
10659482 CTATTTA-AATT-TATTAAATTT
1 CTATTTATAATTAT-TTAAATTT
10659503 CTATTTATAATTATTTAAATTT
1 CTATTTATAATTATTTAAATTT
10659525 C
1 C
10659526 GATATAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.33
22 13 0.62
23 1 0.05
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (22 bp):
CTATTTATAATTATTTAAATTT
Found at i:10659524 original size:31 final size:31
Alignment explanation
Indices: 10659451--10659524 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
10659441 AATAAATTTT
* * *
10659451 TTATCTAAATTCATTAATTATTTATTTATAA
1 TTATTTAAATTTATTAATTATCTATTTATAA
*
10659482 CTATTTAAATTTATTAAATT-TCTATTTATAA
1 TTATTTAAATTTATT-AATTATCTATTTATAA
10659513 TTATTTAAATTT
1 TTATTTAAATTT
10659525 CGATATAAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 33 0.89
32 4 0.11
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (31 bp):
TTATTTAAATTTATTAATTATCTATTTATAA
Found at i:10662531 original size:75 final size:75
Alignment explanation
Indices: 10662440--10662592 Score: 297
Period size: 75 Copynumber: 2.0 Consensus size: 75
10662430 AGAACAGGCA
*
10662440 AAAGAAAAGTGTATCAGGAGCAAAAGAAGCTCAATTAAACAATGACAACACAAACCTTCTTTGAT
1 AAAGAAAAGTGCATCAGGAGCAAAAGAAGCTCAATTAAACAATGACAACACAAACCTTCTTTGAT
10662505 GATTTTGAAG
66 GATTTTGAAG
10662515 AAAGAAAAGTGCATCAGGAGCAAAAGAAGCTCAATTAAACAATGACAACACAAACCTTCTTTGAT
1 AAAGAAAAGTGCATCAGGAGCAAAAGAAGCTCAATTAAACAATGACAACACAAACCTTCTTTGAT
10662580 GATTTTGAAG
66 GATTTTGAAG
10662590 AAA
1 AAA
10662593 ACCATTGAGC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (75 bp):
AAAGAAAAGTGCATCAGGAGCAAAAGAAGCTCAATTAAACAATGACAACACAAACCTTCTTTGAT
GATTTTGAAG
Found at i:10664579 original size:20 final size:19
Alignment explanation
Indices: 10664547--10664592 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
10664537 CCTATATATA
*
10664547 TTTT-AATAAATAAGTT-T
1 TTTTAAATAAATAAATTAT
10664564 TTATTAAATAATATAAATTAT
1 TT-TTAAATAA-ATAAATTAT
10664585 TTTTAAAT
1 TTTTAAAT
10664593 TAATTAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 2 0.08
18 2 0.08
19 5 0.21
20 12 0.50
21 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTTAAATAAATAAATTAT
Found at i:10671408 original size:20 final size:21
Alignment explanation
Indices: 10671367--10671408 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
10671357 ATAATATGTA
*
10671367 TGATTATAAATTTTTAAAATT
1 TGATTATAAATTTTAAAAATT
10671388 TGATT-TAAA-TTTAAAATATT
1 TGATTATAAATTTTAAAA-ATT
10671408 T
1 T
10671409 TTTTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 6 0.32
20 8 0.42
21 5 0.26
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (21 bp):
TGATTATAAATTTTAAAAATT
Found at i:10671478 original size:13 final size:13
Alignment explanation
Indices: 10671462--10671497 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
10671452 GTTTATTAAT
* *
10671462 TTTTTATTTTTTA
1 TTTTTATATATTA
10671475 TTTTTATATATTA
1 TTTTTATATATTA
10671488 TTTTTATATA
1 TTTTTATATA
10671498 ATTTTTAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTTATATATTA
Found at i:10671703 original size:28 final size:29
Alignment explanation
Indices: 10671653--10671708 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
10671643 TTATTTATTT
* *
10671653 AAAATTCAAACATAATCTAAATCGAATAA
1 AAAAATCAAACATAATCTAAATCAAATAA
10671682 AAAAATCAAAC-TAAATC-AAATCAAATA
1 AAAAATCAAACAT-AATCTAAATCAAATA
10671709 TTACAATTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.62, C:0.14, G:0.02, T:0.21
Consensus pattern (29 bp):
AAAAATCAAACATAATCTAAATCAAATAA
Found at i:10672454 original size:22 final size:20
Alignment explanation
Indices: 10672415--10672463 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
10672405 TTTTATTTTT
* *
10672415 TAATTTTTTTAAATTTTATA
1 TAATATTTTTAAATTTTAAA
10672435 TAATATTTTTAATATATTTAAA
1 TAATATTTTTAA-AT-TTTAAA
10672457 TAA-ATTT
1 TAATATTT
10672464 GATAAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.44
21 6 0.24
22 8 0.32
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TAATATTTTTAAATTTTAAA
Found at i:10675488 original size:16 final size:17
Alignment explanation
Indices: 10675464--10675503 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
10675454 TAATTTAAAC
*
10675464 AATTTTATATAT-TTTT
1 AATTATATATATGTTTT
10675480 AATTATATATATGTTTT
1 AATTATATATATGTTTT
10675497 -ATTATAT
1 AATTATAT
10675504 TTCAATTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 18 0.82
17 4 0.18
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
AATTATATATATGTTTT
Found at i:10676626 original size:3 final size:3
Alignment explanation
Indices: 10676618--10676658 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
10676608 TCAATAATTG
* *
10676618 ATC ATC ATC ATC ATC ATC ATC ATC ATTC ATT ACC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC A-TC ATC ATC ATC ATC A
10676659 CCGTGATCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:10678464 original size:3 final size:3
Alignment explanation
Indices: 10678450--10678487 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
10678440 TTAATCTTCA
10678450 AAT AATT AAT AAT AAT AAT AAT AAT -AT AAT -AT AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10678488 GGTTTGGGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 4 0.12
3 25 0.78
4 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
AAT
Found at i:10678474 original size:19 final size:19
Alignment explanation
Indices: 10678450--10678487 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
10678440 TTAATCTTCA
10678450 AATAAT-TAATAATAATAAT
1 AATAATATAAT-ATAATAAT
10678469 AATAATATAATATAATAAT
1 AATAATATAATATAATAAT
10678488 GGTTTGGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AATAATATAATATAATAAT
Found at i:10689812 original size:21 final size:22
Alignment explanation
Indices: 10689788--10689832 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
10689778 ATTTGAATTT
*
10689788 AAATTTT-AAATTTATTAAATA
1 AAATTTTAAAATTAATTAAATA
*
10689809 AAATTTTAAAATTAATTACATA
1 AAATTTTAAAATTAATTAAATA
10689831 AA
1 AA
10689833 TCAATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AAATTTTAAAATTAATTAAATA
Found at i:10689833 original size:21 final size:20
Alignment explanation
Indices: 10689787--10689833 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
10689777 TATTTGAATT
*
10689787 TAAATTTTAAATTTATTAAA
1 TAAATTTTAAATTAATTAAA
*
10689807 TAAAATTTTAAAATTAATTACA
1 T-AAATTTT-AAATTAATTAAA
10689829 TAAAT
1 TAAAT
10689834 CAATTAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 11 0.48
22 11 0.48
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAATTTTAAATTAATTAAA
Found at i:10690225 original size:13 final size:13
Alignment explanation
Indices: 10690209--10690265 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
10690199 AAATTTCAAT
10690209 TATTTTATTTTTA
1 TATTTTATTTTTA
*
10690222 TATTTTATTTTTC
1 TATTTTATTTTTA
*
10690235 T-TTTCATTTTTA
1 TATTTTATTTTTA
* *
10690247 TATTATATTATT-
1 TATTTTATTTTTA
10690259 TATTTTA
1 TATTTTA
10690266 AATTATTAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
12 16 0.44
13 20 0.56
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (13 bp):
TATTTTATTTTTA
Found at i:10690247 original size:25 final size:25
Alignment explanation
Indices: 10690208--10690265 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
10690198 AAAATTTCAA
*
10690208 TTATTTTATTTTTATATTTTATT-T
1 TTATTTTATTTTTATATTATATTAT
*
10690232 TTCTTTTCATTTTTATATTATATTAT
1 TTATTTT-ATTTTTATATTATATTAT
10690258 TTATTTTA
1 TTATTTTA
10690266 AATTATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 6 0.21
25 16 0.55
26 7 0.24
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.74
Consensus pattern (25 bp):
TTATTTTATTTTTATATTATATTAT
Found at i:10690671 original size:29 final size:29
Alignment explanation
Indices: 10690639--10690742 Score: 104
Period size: 29 Copynumber: 3.6 Consensus size: 29
10690629 AAATTATTTT
10690639 TAAAAATTTAATTAATG-CAAATAAATATA
1 TAAAAATTTAATTAATGAC-AATAAATATA
** * *
10690668 TAAATGTTCAATTAAATGACAATAAATATT
1 TAAAAATTTAATT-AATGACAATAAATATA
* * *
10690698 TAAAAATTTAATTGATTATAATAAA-ATA
1 TAAAAATTTAATTAATGACAATAAATATA
10690726 TTAAAAATTTAATTAAT
1 -TAAAAATTTAATTAAT
10690743 TATTAAATTT
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
28 2 0.03
29 34 0.57
30 23 0.38
31 1 0.02
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.38
Consensus pattern (29 bp):
TAAAAATTTAATTAATGACAATAAATATA
Found at i:10690756 original size:29 final size:28
Alignment explanation
Indices: 10690691--10690749 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
10690681 AAATGACAAT
*
10690691 AAATATTTAAAAATTTAATTGATTATAATA
1 AAATA-TTAAAAATTTAATTAATTAT-ATA
10690721 AAATATTAAAAATTTAATTAATTAT-TA
1 AAATATTAAAAATTTAATTAATTATATA
10690748 AA
1 AA
10690750 TTTTATTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 4 0.14
29 19 0.68
30 5 0.18
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (28 bp):
AAATATTAAAAATTTAATTAATTATATA
Found at i:10691715 original size:30 final size:31
Alignment explanation
Indices: 10691675--10691750 Score: 77
Period size: 30 Copynumber: 2.5 Consensus size: 31
10691665 TATTATGAAA
*
10691675 AATATTAAAATTTAAATA-TAT-ATTATATTT
1 AATATAAAAATTTAAATATTATAATTATA-TT
* * *
10691705 TATATAAAAA-TTAAGTATTATAATTTTATT
1 AATATAAAAATTTAAATATTATAATTATATT
*
10691735 AATATAAAAATATAAA
1 AATATAAAAATTTAAA
10691751 ATGTATTTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
29 6 0.17
30 22 0.61
31 8 0.22
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (31 bp):
AATATAAAAATTTAAATATTATAATTATATT
Found at i:10694131 original size:21 final size:19
Alignment explanation
Indices: 10694094--10694135 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
10694084 AATTGGTCAA
*
10694094 TTTAATTAAATTTTTATAT
1 TTTAATTAAATTATTATAT
*
10694113 TTTAATTAAA-AATTATTAT
1 TTTAATTAAATTATTA-TAT
10694132 TTTA
1 TTTA
10694136 TTTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTAATTAAATTATTATAT
Found at i:10703916 original size:16 final size:15
Alignment explanation
Indices: 10703898--10703948 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
10703888 TTTCGTGTTT
10703898 AATATATTAATATAA
1 AATATATTAATATAA
* *
10703913 TAAT-TTTTATATTTAA
1 -AATATATTA-ATATAA
10703929 AATATATTTAATATAA
1 AATATA-TTAATATAA
10703945 AATA
1 AATA
10703949 AATATAATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
15 7 0.25
16 18 0.64
17 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATATTAATATAA
Found at i:10705805 original size:13 final size:13
Alignment explanation
Indices: 10705787--10705839 Score: 70
Period size: 13 Copynumber: 4.0 Consensus size: 13
10705777 TTTGGTTTGA
10705787 ATTAAATTTAAAT
1 ATTAAATTTAAAT
* *
10705800 ATTAAATATATAT
1 ATTAAATTTAAAT
*
10705813 ATTAAATTTGAAT
1 ATTAAATTTAAAT
10705826 ATTAAATTTTAAAT
1 ATTAAA-TTTAAAT
10705840 CGAGATCTGA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 27 0.82
14 6 0.18
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (13 bp):
ATTAAATTTAAAT
Found at i:10705806 original size:7 final size:7
Alignment explanation
Indices: 10705787--10705839 Score: 58
Period size: 7 Copynumber: 8.0 Consensus size: 7
10705777 TTTGGTTTGA
10705787 ATTAAAT
1 ATTAAAT
10705794 -TTAAAT
1 ATTAAAT
10705800 ATTAAAT
1 ATTAAAT
*
10705807 A-TATAT
1 ATTAAAT
10705813 ATTAAAT
1 ATTAAAT
*
10705820 -TTGAAT
1 ATTAAAT
10705826 ATTAAAT
1 ATTAAAT
*
10705833 TTTAAAT
1 ATTAAAT
10705840 CGAGATCTGA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
6 16 0.42
7 22 0.58
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (7 bp):
ATTAAAT
Found at i:10705977 original size:22 final size:21
Alignment explanation
Indices: 10705935--10705987 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
10705925 ATAATTATTT
*
10705935 TATA-TATAAATCTATTTAAA
1 TATATTATAAATCTATTAAAA
*
10705955 TATATTATAAATTTTATTAAAA
1 TATATTATAAA-TCTATTAAAA
10705977 TA-ATATATAAA
1 TATAT-TATAAA
10705988 ACTAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 4 0.14
21 8 0.29
22 16 0.57
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
TATATTATAAATCTATTAAAA
Found at i:10709778 original size:45 final size:45
Alignment explanation
Indices: 10709690--10709779 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 45
10709680 TTTGATGAAT
* * * *
10709690 TTCTTGATGCCTGATCAAGTTTCTGTTCTGGATGGCTGACATTGC
1 TTCTTGATGCCTGATCAAGTTTCTGTTCCGAAGGGCGGACATTGC
* *
10709735 TTCTTGATGCCTGA-CCAGTTTTCTGTTCCGAAGGGCGGCCATTGC
1 TTCTTGATGCCTGATCAAG-TTTCTGTTCCGAAGGGCGGACATTGC
10709780 CTGGCTTTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 3 0.08
45 35 0.92
ACGTcount: A:0.14, C:0.23, G:0.26, T:0.37
Consensus pattern (45 bp):
TTCTTGATGCCTGATCAAGTTTCTGTTCCGAAGGGCGGACATTGC
Found at i:10717822 original size:18 final size:18
Alignment explanation
Indices: 10717799--10717838 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
10717789 ATAGCTTTGG
10717799 AAAAATAAAAAAATTATA
1 AAAAATAAAAAAATTATA
**
10717817 AAAAATAACCAAATTATA
1 AAAAATAAAAAAATTATA
10717835 AAAA
1 AAAA
10717839 CATTTAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATAAAAAAATTATA
Found at i:10728297 original size:4 final size:4
Alignment explanation
Indices: 10728288--10728363 Score: 52
Period size: 4 Copynumber: 19.0 Consensus size: 4
10728278 TTCCTTTTTG
* *
10728288 GTTT GTTT GTTT GTTC GTTC GTTT GTTTT GTTTT GTTTT GTTT G-TT -TTT
1 GTTT GTTT GTTT GTTT GTTT GTTT G-TTT G-TTT G-TTT GTTT GTTT GTTT
* *
10728337 GTTT -TGTT -TTT GTTT TTTT TTTT GTTT
1 GTTT GT-TT GTTT GTTT GTTT GTTT GTTT
10728364 TTTTTTTTTT
Statistics
Matches: 63, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
3 7 0.11
4 42 0.67
5 14 0.22
ACGTcount: A:0.00, C:0.03, G:0.20, T:0.78
Consensus pattern (4 bp):
GTTT
Found at i:10728319 original size:5 final size:5
Alignment explanation
Indices: 10728309--10728372 Score: 68
Period size: 5 Copynumber: 13.6 Consensus size: 5
10728299 TGTTCGTTCG
10728309 TTTGT TTTGT TTTGT TTTG- TTTGTT TTTGT TTTGT TTT-T GTTT-T TTT-T
1 TTTGT TTTGT TTTGT TTTGT TTTG-T TTTGT TTTGT TTTGT -TTTGT TTTGT
10728357 TTTGT TTT-T TTT-T TTT
1 TTTGT TTTGT TTTGT TTT
10728373 TCATATTCCT
Statistics
Matches: 55, Mismatches: 0, Indels: 9
0.86 0.00 0.14
Matches are distributed among these distances:
4 20 0.36
5 31 0.56
6 4 0.07
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (5 bp):
TTTGT
Found at i:10728347 original size:1 final size:1
Alignment explanation
Indices: 10728313--10728373 Score: 50
Period size: 1 Copynumber: 61.0 Consensus size: 1
10728303 CGTTCGTTTG
* * * * * * * *
10728313 TTTTGTTTTGTTTTGTTTGTTTTTGTTTTGTTTTTGTTTTTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
10728374 CATATTCCTC
Statistics
Matches: 44, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (1 bp):
T
Found at i:10728373 original size:15 final size:16
Alignment explanation
Indices: 10728289--10728373 Score: 75
Period size: 17 Copynumber: 5.1 Consensus size: 16
10728279 TCCTTTTTGG
* **
10728289 TTTGTTTGTTTGTTCG
1 TTTGTTTGTTTTTTTT
*
10728305 TTCGTTTGTTTTGTTTTGT
1 TTTGTTTG-TTT-TTTT-T
10728324 TTTGTTTGTTTTTGTTT
1 TTTGTTTGTTTTT-TTT
10728341 TGTT-TTTGTTTTTTTT
1 T-TTGTTTGTTTTTTTT
10728357 TTTGTTT-TTTTTTTT
1 TTTGTTTGTTTTTTTT
10728372 TT
1 TT
10728374 CATATTCCTC
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
15 12 0.21
16 14 0.24
17 16 0.28
18 9 0.16
19 7 0.12
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.81
Consensus pattern (16 bp):
TTTGTTTGTTTTTTTT
Found at i:10728724 original size:2 final size:2
Alignment explanation
Indices: 10728717--10728781 Score: 85
Period size: 2 Copynumber: 32.5 Consensus size: 2
10728707 TTAACTGCAT
* * *
10728717 TA TA TA TA TA TA TA TG TA GA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
10728759 TA TA TA TA TC TA CA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
10728782 TTAGGGTGGT
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.48
Consensus pattern (2 bp):
TA
Found at i:10731592 original size:100 final size:102
Alignment explanation
Indices: 10731326--10731605 Score: 295
Period size: 100 Copynumber: 2.7 Consensus size: 102
10731316 TTAAACCTTT
* ** * *
10731326 CAATAGTTTAGTAAGATCCAATTCAATATTTAAAT-TCTTTAATAGTTTGATAGGATTGAAAAAA
1 CAATAATTTAGTAAGATTTAATTCAA-ATTTAAATCT-TTTAATAGTTTGGTAGGATTG-AAAAT
* *
10731390 TTTATTGTTATTATATTTTTACAAGTAATTCATTCAATCCTC
63 TTTATTATTA-T-TATTTTTACAAGAAATTCATTCAATCCTC
* ** * ** *
10731432 TAAT-ATTTAGGTAAGATTTAATTC-AATTTTTATCCTCCAATAGTTTGGTAGGATTAAAAATTT
1 CAATAATTTA-GTAAGATTTAATTCAAATTTAAATCTTTTAATAGTTTGGTAGGATTGAAAATTT
10731495 TATTATTATTA-TTTTA-AA-AAATTCA-TCAAGTCCTC
65 TATTATTATTATTTTTACAAGAAATTCATTCAA-TCCTC
* *
10731530 CAATAATTTAGTAAGATTTAATTCAAGATTTAAATCTTTTAATAGCTAGGTAGGATTGAAAATTT
1 CAATAATTTAGTAAGATTTAATTCAA-ATTTAAATCTTTTAATAGTTTGGTAGGATTGAAAATTT
10731595 TATTATTATTA
65 TATTATTATTA
10731606 AAAAAATTAT
Statistics
Matches: 145, Mismatches: 23, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
97 4 0.03
98 28 0.19
99 8 0.06
100 46 0.32
101 2 0.01
102 1 0.01
103 13 0.09
104 23 0.16
105 5 0.03
106 15 0.10
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (102 bp):
CAATAATTTAGTAAGATTTAATTCAAATTTAAATCTTTTAATAGTTTGGTAGGATTGAAAATTTT
ATTATTATTATTTTTACAAGAAATTCATTCAATCCTC
Found at i:10732456 original size:17 final size:18
Alignment explanation
Indices: 10732434--10732492 Score: 52
Period size: 17 Copynumber: 3.3 Consensus size: 18
10732424 CTAGATAAAT
*
10732434 AAAAGACTAAA-ACATAA
1 AAAAGACTAAATAAATAA
10732451 AAAAGA-TAAATAAATAA
1 AAAAGACTAAATAAATAA
* *
10732468 ATAAGAC-AAACAAGATATA
1 AAAAGACTAAATAA-ATA-A
10732487 AAAAGA
1 AAAAGA
10732493 AATGTAGGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 4 0.12
17 21 0.62
18 3 0.09
19 6 0.18
ACGTcount: A:0.71, C:0.07, G:0.08, T:0.14
Consensus pattern (18 bp):
AAAAGACTAAATAAATAA
Found at i:10734444 original size:7 final size:7
Alignment explanation
Indices: 10734434--10734461 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
10734424 ATTTGAAGAA
10734434 AAATAAT
1 AAATAAT
10734441 AAATAAT
1 AAATAAT
10734448 AAATAAT
1 AAATAAT
10734455 AAATAAT
1 AAATAAT
10734462 GATAATATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAATAAT
Found at i:10735714 original size:28 final size:29
Alignment explanation
Indices: 10735683--10735750 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 29
10735673 ACATAAAGAT
*
10735683 TAATTATTATATATTAAT-AAATAATAAA
1 TAATTATTATATATTAATAAAATAAAAAA
*
10735711 TAA-TATTATTATTTTAATAAAAATAAAAAA
1 TAATTATTA-TATATTAAT-AAAATAAAAAA
10735741 TAATTATTAT
1 TAATTATTAT
10735751 TTATAATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
27 5 0.15
28 11 0.32
30 13 0.38
31 5 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (29 bp):
TAATTATTATATATTAATAAAATAAAAAA
Found at i:10735751 original size:28 final size:29
Alignment explanation
Indices: 10735683--10735757 Score: 100
Period size: 28 Copynumber: 2.6 Consensus size: 29
10735673 ACATAAAGAT
*
10735683 TAATTATTATATATTAATAAATAATAAATAA
1 TAATTATTAT-T-TTAATAAATAATAAAAAA
10735714 T-ATTATTATTTTAATAAA-AATAAAAAA
1 TAATTATTATTTTAATAAATAATAAAAAA
10735741 TAATTATTATTTATAAT
1 TAATTATTATTT-TAAT
10735758 TATTTATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
27 9 0.22
28 18 0.44
29 5 0.12
30 8 0.20
31 1 0.02
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (29 bp):
TAATTATTATTTTAATAAATAATAAAAAA
Found at i:10744159 original size:14 final size:15
Alignment explanation
Indices: 10744122--10744159 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
10744112 AAGTTATAAT
10744122 TAAATAATA-ATTTA
1 TAAATAATATATTTA
*
10744136 TATATAATATA-TTA
1 TAAATAATATATTTA
10744150 TAAATAATAT
1 TAAATAATAT
10744160 TGTTCAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 20 0.95
15 1 0.05
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TAAATAATATATTTA
Found at i:10744787 original size:17 final size:18
Alignment explanation
Indices: 10744755--10744788 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10744745 TTATTAAGGT
10744755 TAAATATATATAATAAAG
1 TAAATATATATAATAAAG
*
10744773 TAAATATGT-TAATAAA
1 TAAATATATATAATAAA
10744789 TTAACAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (18 bp):
TAAATATATATAATAAAG
Found at i:10745967 original size:203 final size:199
Alignment explanation
Indices: 10745600--10745967 Score: 463
Period size: 203 Copynumber: 1.8 Consensus size: 199
10745590 ATATTATTTA
* *
10745600 TCAAATAACTCTATTCAATAAATTATTTAAATTTAATATTTTAGAATAATTATTTAAATTCAAAT
1 TCAAATAACTCTATTCAATAAATTATCTAAATTTAATATTTTAGAATAACTATTTAAATTCAAAT
* * * *
10745665 CAAAATCTATAAAAAAATTTTGCATAAATTTTAAATTCAAATATATTAAATTATAATTTATTTTT
66 CAAAATCTACAAAAAAATTTTACATAAATTTTAAATTCAAATATATTAAATCATAATTTATCTTT
* * *
10745730 TCTTTTTACATTAATCATTGTTCCAAAAATATATATGTATTTATATGCTTAATATATTTTTATAT
131 TCTTTTAAAATTAATCATAGTTCCAAAAATATATATGTATTTATATGCTTAATATATTTTTATAT
10745795 ACCG
196 ACCG
* * * * * *
10745799 TCAAATAATTCTATTTAATAAATTATCTAAA-TTATTATTTTTGGATGACTATTTAAATTCAAAT
1 TCAAATAACTCTATTCAATAAATTATCTAAATTTAATATTTTAGAATAACTATTTAAATTCAAAT
* * * *
10745863 CAAACTCTACCAAAGTTGAAAATTTTATATAAGTTTTGAAATTTAAATATATTAAATCATAATTT
66 CAAAATCTA-CAAA----AAAATTTTACATAAATTTT-AAATTCAAATATATTAAATCATAATTT
* *
10745928 -TCTTTTC-TTTAAAATCTAATCATAGTTTCAAATATATATA
125 ATCTTTTCTTTTAAAAT-TAATCATAGTTCCAAAAATATATA
10745968 ATATATATAC
Statistics
Matches: 141, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
198 36 0.26
199 31 0.22
202 6 0.04
203 43 0.30
204 25 0.18
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (199 bp):
TCAAATAACTCTATTCAATAAATTATCTAAATTTAATATTTTAGAATAACTATTTAAATTCAAAT
CAAAATCTACAAAAAAATTTTACATAAATTTTAAATTCAAATATATTAAATCATAATTTATCTTT
TCTTTTAAAATTAATCATAGTTCCAAAAATATATATGTATTTATATGCTTAATATATTTTTATAT
ACCG
Found at i:10747168 original size:43 final size:44
Alignment explanation
Indices: 10747120--10747208 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 44
10747110 AGCTTTCTCA
10747120 AACTTGCAAACCAC-GTAATAAGTACAAATTTAGTTTAGTTACT
1 AACTTGCAAACCACTGTAATAAGTACAAATTTAGTTTAGTTACT
* * *
10747163 AACTTGTAAGCCACTGTAATAAGTATAAATTTAGTTTAGTTACT
1 AACTTGCAAACCACTGTAATAAGTACAAATTTAGTTTAGTTACT
10747207 AA
1 AA
10747209 TATAATTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 12 0.29
44 30 0.71
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.35
Consensus pattern (44 bp):
AACTTGCAAACCACTGTAATAAGTACAAATTTAGTTTAGTTACT
Found at i:10748324 original size:4 final size:4
Alignment explanation
Indices: 10748280--10748308 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
10748270 TTTTCAGAAT
10748280 TTTA TTTA TTTA TTTA TTT- TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
10748309 AGATTAGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (4 bp):
TTTA
Found at i:10748333 original size:14 final size:15
Alignment explanation
Indices: 10748284--10748335 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 15
10748274 CAGAATTTTA
*
10748284 TTTATTTATTTATTT
1 TTTATTTATATATTT
*
10748299 TTTATTTATTAGATTAGT
1 TTTATTTA-TATATT--T
10748317 TTTATTTA-ATATTT
1 TTTATTTATATATTT
10748331 TTTAT
1 TTTAT
10748336 CTTTATCTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 6 0.19
15 8 0.26
16 8 0.26
18 9 0.29
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (15 bp):
TTTATTTATATATTT
Found at i:10748379 original size:18 final size:18
Alignment explanation
Indices: 10748343--10748394 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
10748333 TATCTTTATC
* *
10748343 TTATTTTTATTT-TTGTT
1 TTATCTTTATTTATTTTT
*
10748360 TTA-CTTTTCTTTATTTTT
1 TTATC-TTTATTTATTTTT
10748378 TTATCTTTATTTATTTT
1 TTATCTTTATTTATTTT
10748395 CACTTTTATC
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
17 9 0.32
18 18 0.64
19 1 0.04
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (18 bp):
TTATCTTTATTTATTTTT
Found at i:10748400 original size:15 final size:14
Alignment explanation
Indices: 10748328--10748394 Score: 55
Period size: 15 Copynumber: 4.4 Consensus size: 14
10748318 TTATTTAATA
10748328 TTTTTTATCTTTATCT
1 TTTTTTATCTTTA--T
* *
10748344 TATTTTTATTTTTGT
1 T-TTTTTATCTTTAT
10748359 TTTACTTT-TCTTTAT
1 TTT--TTTATCTTTAT
10748374 TTTTTTATCTTTAT
1 TTTTTTATCTTTAT
10748388 TTATTTT
1 TT-TTTT
10748395 CACTTTTATC
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.26
15 14 0.33
16 4 0.10
17 10 0.24
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.78
Consensus pattern (14 bp):
TTTTTTATCTTTAT
Found at i:10748414 original size:22 final size:22
Alignment explanation
Indices: 10748376--10748417 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
10748366 TTCTTTATTT
*
10748376 TTTTATCTTTATTTATTTTCAC
1 TTTTATCTTTATCTATTTTCAC
10748398 TTTTATCTTGT-TCTATTTTC
1 TTTTATCTT-TATCTATTTTC
10748418 TTTAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.14, C:0.14, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTTATCTTTATCTATTTTCAC
Found at i:10748500 original size:57 final size:58
Alignment explanation
Indices: 10748430--10749063 Score: 778
Period size: 57 Copynumber: 10.8 Consensus size: 58
10748420 TAAATAAAAA
*
10748430 TCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAACAAA-TT
1 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAACAAAGTT
* * * * *
10748487 TCCAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
1 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAACAAAGTT
* * * *
10748545 TC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTT
1 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAACAAAGTT
* * *
10748602 TCAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTT
1 TCAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAACAAAGTT
* * * *
10748662 TCAAAAAAAAAAATTTTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTAAAAATAAATTT
1 TC----AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAACAAAGTT
* * *
10748724 TC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTT
1 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAAC-AAAGTT
* * *
10748783 TC-GAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
1 TCAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAACAAAGTT
* * *
10748840 TCAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTT
1 TCAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAACAAAGTT
* *
10748900 TCAAAAAAAAATATTTTTGAGGAACAA-TTGAAAGTATCAATTTTCCTTGGAAATCAAAGTT
1 TC--AAAAAAATATTTTTGAGGAA-AAGTTGAAAGTATCAATTTTCCTT-AAAAACAAAGTT
* *
10748961 TCAAAAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TT
1 TC--AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAACAAAGTT
* *
10749020 TCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
10749064 CTACACAAGA
Statistics
Matches: 512, Mismatches: 46, Indels: 38
0.86 0.08 0.06
Matches are distributed among these distances:
57 190 0.37
58 23 0.04
59 120 0.23
60 29 0.06
61 90 0.18
62 19 0.04
63 34 0.07
64 7 0.01
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (58 bp):
TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAACAAAGTT
Found at i:10748734 original size:179 final size:173
Alignment explanation
Indices: 10748430--10749063 Score: 880
Period size: 179 Copynumber: 3.6 Consensus size: 173
10748420 TAAATAAAAA
* * *
10748430 TCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAACAAATTTCCAAAAA
1 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAA
*
10748495 ATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAAAATATTTTT
66 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAAAATATTTTT
* *
10748560 GGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAATTT
131 GGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAATTT
* **
10748602 TCAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAA
1 TCAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTC---
* * *
10748667 AAAAAAAATTTTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
60 -AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAAAA
10748732 TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTT
124 TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAATTT
*
10748783 TC-GAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAA
1 TCAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTCAAAA
* * *
10748846 AAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAAAA
64 AAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAATTTTC---AAAAAA
* * *
10748911 TATTTTTGAGGAACAA-TTGAAAGTATCAATTTTCCTTGGAAATCAAAGTT
124 TATTTTTGGGGAA-AAGTTGAAAGTATCAATTTTCCTTGAAAATCAAATTT
* *
10748961 TCAAAAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAA
1 TC--AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAA
*
10749026 AAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
64 AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
10749064 CTACACAAGA
Statistics
Matches: 411, Mismatches: 31, Indels: 33
0.87 0.07 0.07
Matches are distributed among these distances:
172 9 0.02
173 38 0.09
174 10 0.02
175 42 0.10
176 7 0.02
178 15 0.04
179 216 0.53
180 17 0.04
181 56 0.14
182 1 0.00
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (173 bp):
TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAA
ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAAAATATTTTT
GGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAATTT
Found at i:10748855 original size:238 final size:233
Alignment explanation
Indices: 10748432--10749063 Score: 1021
Period size: 238 Copynumber: 2.7 Consensus size: 233
10748422 AATAAAAATC
* * * *
10748432 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAACAAATTTCCAAAAAAT
1 AAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAT
*
10748497 ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAAAATATTTTTGG
66 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTA-AAATAAATTTTCAAAAAATATTTTTGG
*
10748562 GGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAAGGATTTTTGAGGAAAA
130 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGATTTTTGAGGAAAA
10748627 GTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAA
195 GTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC--AA
*
10748668 AAAAAAATTTTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAT
1 AAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAT
* *
10748733 ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTCGAAAAATATTTTT
66 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT--AAATTTTCAAAAAATATTTTT
*
10748798 AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGATTTTTGAGGAA
128 GGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGATTTTTGAGGAA
10748863 AAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAA
193 AAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAA
* ** *
10748904 AAAAAAATATTTTTGAGGAACAATTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAA
1 AAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC---AAA
* *
10748969 AAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAATATTT
62 AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAATTTTCAAAAAATATTT
10749034 TTGGGGAAAAGTTGAAAGTATCAATTTTCC
126 TTGGGGAAAAGTTGAAAGTATCAATTTTCC
10749064 CTACACAAGA
Statistics
Matches: 368, Mismatches: 21, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
236 146 0.40
237 8 0.02
238 168 0.46
240 46 0.12
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (233 bp):
AAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAT
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTTCAAAAAATATTTTTGGG
GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGATTTTTGAGGAAAAG
TTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAA
Found at i:10754289 original size:256 final size:254
Alignment explanation
Indices: 10753887--10754372 Score: 658
Period size: 256 Copynumber: 1.9 Consensus size: 254
10753877 ATTTTTTTAA
*
10753887 TAAAAATTTTAATTTAACTAAAACTTATTAAAAAGATTTTTTTGTATCCAAAAATGTATCTAGGT
1 TAAAAATTCTAATTTAACTAAAACTTATTAAAAAGATTTTTTTGTATCCAAAAATGTATCTAGGT
** ** * * * * *
10753952 TCGGAGTACGGTTACATGTGGAGAAAGATTAACACCGCATTGTACCCGTTAAAAACCGGTATCAA
66 TAAGAGTACAATTACATGTGGAAAAAGATTAACACCGCATAGTACCCATTAAAAAACGATATCAA
* * *
10754017 TTAATAATATGTTATCCTTTATTATTTATAAAAAA-GTACCTTTATTTTAAATTTT-AAATAATT
131 TTAATAACATGTTATCCTTTATTATTGATAAAAAATG-ACCTTAATTTTAAATTTTAAAATAATT
*
10754080 TCTTAAATCCCGTTTATTATCATAAAACTCCTTTTTTTTTTCTATCCTTTTTAGAATAACTT
195 T-TTAAATCCCATTTATTATCATAAAAC-CCTTTTTTTTTTCTATCCTTTTTAGAATAACTT
* * *
10754142 TAAAAATTCTAATTTAATTAAAACTTATTAAAAATATTTTTTTGGTATGCAAAAA-GATATCTAG
1 TAAAAATTCTAATTTAACTAAAACTTATTAAAAAGATTTTTTT-GTATCCAAAAATG-TATCTAG
* * * * *
10754206 ATTTAAGAGTACAATTGCATGT-GAAAAATATTAACACCTCATAGTACCCATTAAAAAATGATA-
64 -GTTAAGAGTACAATTACATGTGGAAAAAGATTAACACCGCATAGTACCCATTAAAAAACGATAT
10754269 CTAATTAATAACATGTTATCCTTTATTATTGATAAAAAATGACCTTAATTTTAAATTTTAAAAAT
128 C-AATTAATAACATGTTATCCTTTATTATTGATAAAAAATGACCTTAATTTTAAATTTT-AAAAT
*
10754334 AATTTTTGAATCCCATTTATTATCATAAAACCCTTTTTT
191 AATTTTTAAATCCCATTTATTATCATAAAACCCTTTTTT
10754373 CCCATCCTTT
Statistics
Matches: 201, Mismatches: 23, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
255 42 0.21
256 110 0.55
257 40 0.20
258 9 0.04
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (254 bp):
TAAAAATTCTAATTTAACTAAAACTTATTAAAAAGATTTTTTTGTATCCAAAAATGTATCTAGGT
TAAGAGTACAATTACATGTGGAAAAAGATTAACACCGCATAGTACCCATTAAAAAACGATATCAA
TTAATAACATGTTATCCTTTATTATTGATAAAAAATGACCTTAATTTTAAATTTTAAAATAATTT
TTAAATCCCATTTATTATCATAAAACCCTTTTTTTTTTCTATCCTTTTTAGAATAACTT
Found at i:10756404 original size:2 final size:2
Alignment explanation
Indices: 10756397--10756422 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10756387 GTACCAAATC
10756397 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10756423 TACAATCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10756593 original size:14 final size:15
Alignment explanation
Indices: 10756556--10756593 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
10756546 AAGTTATAAT
10756556 TAAATAATA-ATTTA
1 TAAATAATATATTTA
*
10756570 TATATAATATA-TTA
1 TAAATAATATATTTA
10756584 TAAATAATAT
1 TAAATAATAT
10756594 TGTTCACCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 20 0.95
15 1 0.05
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TAAATAATATATTTA
Found at i:10758724 original size:10 final size:10
Alignment explanation
Indices: 10758696--10758728 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
10758686 CATTTTTGCC
10758696 TTTATTATTCT
1 TTTATT-TTCT
10758707 TTTA-TTTCT
1 TTTATTTTCT
10758716 TTTATTTTCT
1 TTTATTTTCT
10758726 TTT
1 TTT
10758729 TTATTTGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.38
10 9 0.43
11 4 0.19
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTATTTTCT
Found at i:10773983 original size:3 final size:3
Alignment explanation
Indices: 10773975--10774051 Score: 104
Period size: 3 Copynumber: 25.7 Consensus size: 3
10773965 TTAAAGTCTT
*
10773975 TTA TTA TTA TTA TTA TTA TTAA TTAA TTA TTA TTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TT-A TTA TTA TTA TTA TTA TTA TTA
*
10774022 TTG TTA TTA TTA -TA TTA TT- TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10774052 CAAACTTTAG
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
2 4 0.06
3 56 0.84
4 7 0.10
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:10776876 original size:57 final size:58
Alignment explanation
Indices: 10776808--10776985 Score: 141
Period size: 57 Copynumber: 3.0 Consensus size: 58
10776798 TGCTTTTGTA
10776808 CAAG-AAAAATTGATACTTTCAACTTTTTCTTAAAACGTTTTTTTTTTATAAAATTTTT
1 CAAGAAAAAATTGATACTTTCAACTTTTTCTTAAAA-GTTTTTTTTTTATAAAATTTTT
* * * ** * * *
10776866 -AA-AGAAAATTGGTAC-TTCTAACTTTTCCACAAAATGGTTTTTTTTTTTTTTAATTTTAACTT
1 CAAGAAAAAATTGATACTTTC-AACTTTTTCTTAAAA--G-TTTTTTTTTTATAAAATTT---TT
* * *
10776928 CAAGAAAAAATTGATACTTTCAATTTTTTCTTAAAAATATATTTTTTTA-AAAATTTTT
1 CAAGAAAAAATTGATACTTTCAACTTTTTCTTAAAAGT-TTTTTTTTTATAAAATTTTT
10776986 TTATTTTCAA
Statistics
Matches: 89, Mismatches: 20, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
56 3 0.03
57 24 0.27
58 3 0.03
59 16 0.18
61 6 0.07
62 10 0.11
63 2 0.02
64 22 0.25
65 3 0.03
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.49
Consensus pattern (58 bp):
CAAGAAAAAATTGATACTTTCAACTTTTTCTTAAAAGTTTTTTTTTTATAAAATTTTT
Found at i:10777078 original size:68 final size:69
Alignment explanation
Indices: 10776982--10777181 Score: 239
Period size: 68 Copynumber: 2.9 Consensus size: 69
10776972 TTTTAAAAAT
*
10776982 TTTTTTATTTTCAAAAAAAATTGATACTTTCAACTTTCCCTAAAAAATATTTTTTTAAAAAAAAA
1 TTTTTTATTTTC-AGAAAAATTGATACTTTCAACTTTCCCTAAAAAATATTTTTTTAAAAAAAAA
10777047 CC-CC
65 CCTCC
* *
10777051 TTTTTTACTTTCAGAAAAATTGATACTTTCAACTTTCTCTAAAAAATA-TTTTTT---AAAAAAC
1 TTTTTTATTTTCAGAAAAATTGATACTTTCAACTTTCCCTAAAAAATATTTTTTTAAAAAAAAAC
**
10777112 CTTTT
66 C-TCC
* * * *
10777117 TTTTTTATTTTCAGGAAAATTGATACTTTTAATTTTTCCTTAAAAAATATATATTTTTAAAAAAA
1 TTTTTTATTTTCAGAAAAATTGATACTTTCAA-CTTTCCCTAAAAAATAT-T-TTTTTAAAAAAA
10777182 TTTTATTTTA
Statistics
Matches: 111, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
64 8 0.07
66 29 0.26
67 19 0.17
68 34 0.31
69 12 0.11
70 5 0.05
73 4 0.04
ACGTcount: A:0.40, C:0.12, G:0.03, T:0.46
Consensus pattern (69 bp):
TTTTTTATTTTCAGAAAAATTGATACTTTCAACTTTCCCTAAAAAATATTTTTTTAAAAAAAAAC
CTCC
Found at i:10778151 original size:29 final size:27
Alignment explanation
Indices: 10778119--10778218 Score: 95
Period size: 27 Copynumber: 3.8 Consensus size: 27
10778109 ATAATAAAAA
*
10778119 ATATATTAATAAATAATAAAAACATAT
1 ATATATTAATAAATAATAAAAAAATAT
*
10778146 ATATATTAATAGATTAATAAAAAAGAT-T
1 ATATATTAATA-AATAATAAAAAA-ATAT
* *
10778174 A-ATA--GATAAATAATAATAAAATAT
1 ATATATTAATAAATAATAAAAAAATAT
10778198 ATAT-TT-ATAAATAAATAAAAA
1 ATATATTAATAAAT-AATAAAAA
10778219 TACAAATACA
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
23 2 0.03
24 12 0.20
25 11 0.18
26 7 0.12
27 14 0.23
28 12 0.20
29 2 0.03
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (27 bp):
ATATATTAATAAATAATAAAAAAATAT
Found at i:10778198 original size:50 final size:50
Alignment explanation
Indices: 10778105--10778218 Score: 137
Period size: 50 Copynumber: 2.3 Consensus size: 50
10778095 ACATTGATAG
* *
10778105 ATAAA-TAATAAAAAATATATTAATAAATAATAAAAACATATATATATTA
1 ATAAATTAATAAAAAAGATAATAATAAATAATAAAAACATATATATATTA
*
10778154 ATAGATTAATAAAAAAGATTAATAGATAAATAATAATAAA-ATATATAT-TT-
1 ATAAATTAATAAAAAAGA-TAATA-ATAAATAATAA-AAACATATATATATTA
*
10778204 ATAAATAAATAAAAA
1 ATAAATTAATAAAAA
10778219 TACAAATACA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
49 4 0.07
50 24 0.43
51 6 0.11
52 19 0.34
53 3 0.05
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.32
Consensus pattern (50 bp):
ATAAATTAATAAAAAAGATAATAATAAATAATAAAAACATATATATATTA
Found at i:10778610 original size:44 final size:44
Alignment explanation
Indices: 10778417--10778665 Score: 261
Period size: 45 Copynumber: 5.6 Consensus size: 44
10778407 AAATTTTTAT
*
10778417 CAAAACTCCTCTAAGT-AGAGGCTCAATGACTTTGAAAAACATAAA
1 CAAAGCTCCTCTAA-TCAGAGGCTCAATGACTTTGAAAAA-ATAAA
* * * *
10778462 CAAAGCTCCTCTAAACATAGGCTTAACGACTTTGAAAAATATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAA-ATAAA
* * * * **
10778507 TAAAGCTCTTTTAATCAGAGGCTC-ATCAACTTTTGAAACTATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAAT-GAC-TTTGAAAAAATAAA
*
10778552 CAAAGCTCCTCTAATCAGAGGCTCATTGACTTTTG-AAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAATGAC-TTTGAAAAAATAAA
* * *
10778596 CAAAGCACCTCTAATCAAAGGCTCACTGACTTTGAAAAAATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAA
* * *
10778640 TAAAGCTCCTCTAAACAGAGGTTCAA
1 CAAAGCTCCTCTAATCAGAGGCTCAA
10778666 CTACTTTTGG
Statistics
Matches: 167, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
43 4 0.02
44 64 0.38
45 91 0.54
46 8 0.05
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.25
Consensus pattern (44 bp):
CAAAGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAAATAAA
Found at i:10779000 original size:16 final size:16
Alignment explanation
Indices: 10778976--10779010 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10778966 GTATATGCTT
*
10778976 ATGCGAAATGCAATGC
1 ATGCAAAATGCAATGC
*
10778992 ATGCAAAATTCAATGC
1 ATGCAAAATGCAATGC
10779008 ATG
1 ATG
10779011 TTATGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (16 bp):
ATGCAAAATGCAATGC
Found at i:10783333 original size:83 final size:83
Alignment explanation
Indices: 10783240--10783407 Score: 232
Period size: 83 Copynumber: 2.0 Consensus size: 83
10783230 TCAAGGGAAA
10783240 TTGATACTTTCAACTTTCCCTAAAAAATAT-TTTTTAAAAAAAAACCC-TTTTTTTTACTTTCAG
1 TTGATACTTTCAACTTTCCCTAAAAAATATATTTTT--AAAAAAACCCTTTTTTTTTACTTTCAG
* *
10783303 GAAAATTGATATTTTTAACT
64 GAAAATTGATACTTTCAACT
* * ** * *
10783323 TTGATACTTTCAACTTTTCTTAAAAAATATATTTTTTTAAAAACCCTTTTTTTTTATTTTCAGGG
1 TTGATACTTTCAACTTTCCCTAAAAAATATATTTTTAAAAAAACCCTTTTTTTTTACTTTCAGGA
10783388 AAATTGATACTTTCAACT
66 AAATTGATACTTTCAACT
10783406 TT
1 TT
10783408 CCCTTAAAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
82 8 0.11
83 62 0.83
84 5 0.07
ACGTcount: A:0.33, C:0.14, G:0.05, T:0.48
Consensus pattern (83 bp):
TTGATACTTTCAACTTTCCCTAAAAAATATATTTTTAAAAAAACCCTTTTTTTTTACTTTCAGGA
AAATTGATACTTTCAACT
Found at i:10783444 original size:16 final size:17
Alignment explanation
Indices: 10783411--10783454 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
10783401 CAACTTTCCC
10783411 TTAAAAAATATATATATT
1 TTAAAAAA-ATATATATT
*
10783429 TTAAAAAAAT-TTTATT
1 TTAAAAAAATATATATT
*
10783445 TTAAGAAAAT
1 TTAAAAAAAT
10783455 CCTAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.58
17 2 0.08
18 8 0.33
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
TTAAAAAAATATATATT
Found at i:10784413 original size:27 final size:25
Alignment explanation
Indices: 10784381--10784481 Score: 91
Period size: 27 Copynumber: 3.9 Consensus size: 25
10784371 AATAATAAAA
10784381 ATATATTAATAAATAATAAAAACGTAT
1 ATATATTAATAAATAATAAAAA-G-AT
*
10784408 ATATATTAATAGATTAATAAAAAAGAT
1 ATATATTAATA-AATAAT-AAAAAGAT
*
10784435 -TA-A-TAGATAAATAATAATAAAAAT
1 ATATATTA-ATAAATAATAA-AAAGAT
*
10784459 ATATATTTATAAATAAATAAAAA
1 ATATATTAATAAAT-AATAAAAA
10784482 TACAAATACA
Statistics
Matches: 62, Mismatches: 4, Indels: 17
0.75 0.05 0.20
Matches are distributed among these distances:
23 2 0.03
24 12 0.19
25 6 0.10
26 12 0.19
27 19 0.31
28 6 0.10
29 5 0.08
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (25 bp):
ATATATTAATAAATAATAAAAAGAT
Found at i:10784445 original size:52 final size:50
Alignment explanation
Indices: 10784364--10784481 Score: 123
Period size: 51 Copynumber: 2.3 Consensus size: 50
10784354 ACATACATTG
* * *
10784364 ATAGATGAATAATAAAAATATATTAATAAATAATAA-AAACGTATATATATTA
1 ATAGATAAATAA-AAAAATATAATAATAAATAATAATAAA--AATATATATTA
* *
10784416 ATAGATTAATAAAAAAGAT-TAATAGATAAATAATAATAAAAATATATATTT
1 ATAGATAAATAAAAAA-ATATAATA-ATAAATAATAATAAAAATATATATTA
*
10784467 ATAAATAAATAAAAA
1 ATAGATAAATAAAAA
10784482 TACAAATACA
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
51 30 0.53
52 24 0.42
53 3 0.05
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (50 bp):
ATAGATAAATAAAAAAATATAATAATAAATAATAATAAAAATATATATTA
Found at i:10785582 original size:3 final size:3
Alignment explanation
Indices: 10785570--10785599 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
10785560 TTAAAATAAA
10785570 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10785600 TGTAAACACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:10785638 original size:10 final size:9
Alignment explanation
Indices: 10785625--10785690 Score: 62
Period size: 10 Copynumber: 7.0 Consensus size: 9
10785615 TTAATTATTT
10785625 TTTTCTTCTC
1 TTTTCTT-TC
10785635 TTTTCTTTC
1 TTTTCTTTC
10785644 TTTTTCTTTC
1 -TTTTCTTTC
10785654 -TTTCTTTC
1 TTTTCTTTC
* *
10785662 TTTTTTTTTT
1 -TTTTCTTTC
*
10785672 TTTTCCTTC
1 TTTTCTTTC
10785681 TTCTTCTTTC
1 TT-TTCTTTC
10785691 CTTATCCAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
8 8 0.17
9 10 0.22
10 28 0.61
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTCTTTC
Found at i:10785643 original size:14 final size:13
Alignment explanation
Indices: 10785622--10785682 Score: 58
Period size: 14 Copynumber: 4.8 Consensus size: 13
10785612 TTTTTAATTA
10785622 TTTT-TTTCTTCTC
1 TTTTCTTTCTT-TC
*
10785635 TTTTCTTTCTTTT
1 TTTTCTTTCTTTC
10785648 TCTTTCTTTCTTTC
1 T-TTTCTTTCTTTC
10785662 TTTT-TTT-TTT-
1 TTTTCTTTCTTTC
*
10785672 TTTTCCTTCTT
1 TTTTCTTTCTT
10785683 CTTCTTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
10 4 0.10
11 5 0.12
12 5 0.12
13 9 0.22
14 18 0.44
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTCTTTC
Found at i:10785645 original size:4 final size:4
Alignment explanation
Indices: 10785626--10785690 Score: 50
Period size: 4 Copynumber: 17.0 Consensus size: 4
10785616 TAATTATTTT
* *
10785626 TTTC TTCTC TTTTC TTTC -TT- TTTC TTTC TTTC TTTC TTT- TTTT TTTT
1 TTTC TT-TC -TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
*
10785673 TTTC CTTC -TTC -TTC TTTC
1 TTTC TTTC TTTC TTTC TTTC
10785691 CTTATCCAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
3 13 0.25
4 34 0.64
5 4 0.08
6 2 0.04
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:10786702 original size:21 final size:21
Alignment explanation
Indices: 10786657--10786703 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
10786647 TTTTAAAATT
*
10786657 TATTTTATATATTATTTTTGT
1 TATTTTATATATTATTTTTGA
10786678 TATTTTA-ATTATTATTCTTT-A
1 TATTTTATA-TATTATT-TTTGA
10786699 TATTT
1 TATTT
10786704 ATGCATGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 1 0.04
21 19 0.83
22 3 0.13
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
TATTTTATATATTATTTTTGA
Found at i:10796723 original size:16 final size:14
Alignment explanation
Indices: 10796702--10796767 Score: 60
Period size: 15 Copynumber: 4.2 Consensus size: 14
10796692 AACAAATTCA
10796702 ATTTTTATCTTGTATT
1 ATTTTTAT-TT-TATT
10796718 ATTTTTATTTTTATT
1 ATTTTTA-TTTTATT
*
10796733 TTTTTGTATTTTATT
1 ATTTT-TATTTTATT
10796748 ATTTATTATTATTATGT
1 ATTT-TTATT-TTAT-T
10796765 ATT
1 ATT
10796768 AATATATGTA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
15 22 0.51
16 16 0.37
17 5 0.12
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.73
Consensus pattern (14 bp):
ATTTTTATTTTATT
Found at i:10796756 original size:25 final size:25
Alignment explanation
Indices: 10796706--10796768 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
10796696 AATTCAATTT
* *
10796706 TTATCTTGTATTATTTTTATTTTTA
1 TTATTTTGTATTATTATTATTTTTA
*
10796731 TTTTTTTGTATT-TTATTATTTATTA
1 TTATTTTGTATTATTATTATTT-TTA
*
10796756 TTATTATGTATTA
1 TTATTTTGTATTA
10796769 ATATATGTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 8 0.26
25 23 0.74
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (25 bp):
TTATTTTGTATTATTATTATTTTTA
Found at i:10796791 original size:4 final size:4
Alignment explanation
Indices: 10796782--10796880 Score: 51
Period size: 4 Copynumber: 23.5 Consensus size: 4
10796772 TATGTATATC
* * *
10796782 TTTA TTTA TTTA TTTA -TT- TTTG TTTA TTTT TTTG TTAATA TTTA TATGTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA T-T-TA
* * *
10796832 TTTTA TTTA TATA GTTA TATA TTTA -TTA TTATA TTATAA TTTA TTTA
1 -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TT-T-A TTTA TTTA
10796879 TT
1 TT
10796881 ATTCTTTTTT
Statistics
Matches: 75, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
3 7 0.09
4 48 0.64
5 10 0.13
6 9 0.12
7 1 0.01
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:10797500 original size:19 final size:20
Alignment explanation
Indices: 10797468--10797516 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
10797458 TTCGATGAAC
*
10797468 TTCCGGTGAAAAATC-CAGA
1 TTCCGATGAAAAATCTCAGA
*
10797487 TTCCGATGACAAATCTCAGA
1 TTCCGATGAAAAATCTCAGA
* *
10797507 ATCCGGTGAA
1 TTCCGATGAA
10797517 TCTTCAACCG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.22
Consensus pattern (20 bp):
TTCCGATGAAAAATCTCAGA
Found at i:10797911 original size:17 final size:16
Alignment explanation
Indices: 10797889--10797954 Score: 68
Period size: 17 Copynumber: 4.2 Consensus size: 16
10797879 TATTTAATAT
10797889 TTTTTATCTTTATCTTA
1 TTTTTATCTTTAT-TTA
*
10797906 TTTTTATTTTTATTTTA
1 TTTTTATCTTTA-TTTA
*
10797923 CTTTT-T-TTTA-TT-
1 TTTTTATCTTTATTTA
10797935 TTTTTATCTTTATTTA
1 TTTTTATCTTTATTTA
10797951 TTTT
1 TTTT
10797955 CACTTTTATT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
12 4 0.10
13 3 0.07
14 4 0.10
15 6 0.15
16 5 0.12
17 18 0.44
18 1 0.02
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTATCTTTATTTA
Found at i:10797927 original size:6 final size:5
Alignment explanation
Indices: 10797877--10797966 Score: 55
Period size: 6 Copynumber: 17.6 Consensus size: 5
10797867 TTAGGTTAGA
* * *
10797877 TTTAT TTAAT ATT-T TTTAT CTTTAT CTTATT TTTATT TTTAT TTTACT
1 TTTAT TTTAT TTTAT TTTAT -TTTAT TTTA-T TTTA-T TTTAT TTTA-T
10797925 TTT-T TTTA- TTT-T TTTAT CTTTA- TTTAT TTTCACT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT -TTTAT TTTAT TTT-A-T TTTAT TTT
10797967 GTTCTATTTC
Statistics
Matches: 68, Mismatches: 6, Indels: 22
0.71 0.06 0.23
Matches are distributed among these distances:
4 17 0.25
5 22 0.32
6 25 0.37
7 4 0.06
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:10797932 original size:21 final size:23
Alignment explanation
Indices: 10797889--10797963 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
10797879 TATTTAATAT
10797889 TTTTTATCTTTATCTTATTTTTA
1 TTTTTATCTTTATCTTATTTTTA
*
10797912 TTTTTAT-TTTA-CTTTTTTTTA
1 TTTTTATCTTTATCTTATTTTTA
*
10797933 TTTTTTTATCTTTAT-TTATTTTCA
1 --TTTTTATCTTTATCTTATTTTTA
*
10797957 CTTTTAT
1 TTTTTAT
10797964 TTTGTTCTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
21 9 0.20
22 10 0.23
23 14 0.32
24 11 0.25
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTTATCTTTATCTTATTTTTA
Found at i:10797961 original size:23 final size:22
Alignment explanation
Indices: 10797836--10797963 Score: 84
Period size: 21 Copynumber: 5.6 Consensus size: 22
10797826 CTAGGTTTTT
*
10797836 TTTTTATTTGTTATATTTATTTA
1 TTTTTATTT-TTATCTTTATTTA
** *
10797859 --TTTATTTATTAGGTTAGATTTA
1 TTTTTATTT-TTATCTT-TATTTA
*
10797881 TTTAATATTTTTTATCTTTATCTTA
1 TTT-TTA-TTTTTATCTTTAT-TTA
10797906 TTTTTATTTTTAT-TTTACTTT-
1 TTTTTATTTTTATCTTTA-TTTA
10797927 TTTTTATTTTTTTATCTTTATTTA
1 TTTTTA--TTTTTATCTTTATTTA
* *
10797951 TTTTCACTTTTAT
1 TTTTTATTTTTAT
10797964 TTTGTTCTAT
Statistics
Matches: 83, Mismatches: 11, Indels: 23
0.71 0.09 0.20
Matches are distributed among these distances:
21 18 0.22
22 17 0.20
23 18 0.22
24 14 0.17
25 13 0.16
26 3 0.04
ACGTcount: A:0.20, C:0.05, G:0.03, T:0.72
Consensus pattern (22 bp):
TTTTTATTTTTATCTTTATTTA
Found at i:10797962 original size:40 final size:40
Alignment explanation
Indices: 10797895--10797980 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 40
10797885 ATATTTTTTA
* * *
10797895 TCTTTATCTTATTTTTATTTTTATTTTACTTTT-TTTTATT
1 TCTTTATCTTATATTTATTTTCATTTTA-TTTTGTTCTATT
*
10797935 TTTTTATCTT-TATTTATTTTCACTTTTATTTTGTTCTATT
1 TCTTTATCTTATATTTATTTTCA-TTTTATTTTGTTCTATT
10797975 TCTTTA
1 TCTTTA
10797981 AATAAAAATC
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
39 14 0.36
40 25 0.64
ACGTcount: A:0.15, C:0.09, G:0.01, T:0.74
Consensus pattern (40 bp):
TCTTTATCTTATATTTATTTTCATTTTATTTTGTTCTATT
Found at i:10797979 original size:34 final size:33
Alignment explanation
Indices: 10797914--10797980 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
10797904 TATTTTTATT
* *
10797914 TTTATTTTACTTTTTTTTATTTTTTTATCTTTA
1 TTTATTTTACTTTTTTTTATTCTATTATCTTTA
*
10797947 TTTATTTTCACTTTTATTTTGTTCTATT-TCTTTA
1 TTTATTTT-ACTTTT-TTTTATTCTATTATCTTTA
10797981 AATAAAAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 8 0.28
34 12 0.41
35 9 0.31
ACGTcount: A:0.15, C:0.09, G:0.01, T:0.75
Consensus pattern (33 bp):
TTTATTTTACTTTTTTTTATTCTATTATCTTTA
Found at i:10798147 original size:57 final size:59
Alignment explanation
Indices: 10797992--10798265 Score: 416
Period size: 57 Copynumber: 4.7 Consensus size: 59
10797982 ATAAAAATCA
* * * *
10797992 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAA
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAAGTTTC--C
*
10798053 AAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAA-TTTCC
1 AAAAA-ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAAGTTTCC
10798111 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAA-TTTCC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAAGTTTCC
10798168 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATAAAAGTTT-C
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAATAAAAGTTTCC
10798226 AATAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AA-AAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
10798266 TCCTGCACAA
Statistics
Matches: 203, Mismatches: 5, Indels: 12
0.92 0.02 0.05
Matches are distributed among these distances:
56 1 0.00
57 98 0.48
58 11 0.05
59 40 0.20
60 4 0.02
61 8 0.04
62 41 0.20
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (59 bp):
AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAAGTTTCC
Found at i:10802633 original size:41 final size:41
Alignment explanation
Indices: 10802587--10802881 Score: 430
Period size: 41 Copynumber: 7.1 Consensus size: 41
10802577 ATGATTGTCA
10802587 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
10802628 AGGAGCAATTTATTTTCCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
10802669 AGGAGCAATTTACTTTTCAAAATCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
10802710 AGGAGCAATTTATTTTCCAAAGTCGTGATGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
10802751 AGGATCAATTTACTCTT-CAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACT-TTCCAAAGTCGTGGTGCCTCTGTTTAG
*
10802792 AGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * * * *
10802833 AGGAGCAATTTATGTTTTTCAAAGTCGTTGAGCCTCTGTTTAT
1 AGGAGCAATTTA--CTTTCCAAAGTCGTGGTGCCTCTGTTTAG
10802876 AGGAGC
1 AGGAGC
10802882 TTTGGTAAAA
Statistics
Matches: 227, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
40 2 0.01
41 194 0.85
42 2 0.01
43 29 0.13
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:10802908 original size:9 final size:8
Alignment explanation
Indices: 10802888--10802941 Score: 58
Period size: 9 Copynumber: 6.6 Consensus size: 8
10802878 GAGCTTTGGT
10802888 AAAAA-AA
1 AAAAACAA
10802895 AAAAACACA
1 AAAAACA-A
*
10802904 AAAAA-AT
1 AAAAACAA
10802911 AAAAACATA
1 AAAAACA-A
10802920 AAAAACACA
1 AAAAACA-A
10802929 AAAAACAA
1 AAAAACAA
10802937 AAAAA
1 AAAAA
10802942 AATGACAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
7 10 0.25
8 9 0.22
9 21 0.52
ACGTcount: A:0.85, C:0.11, G:0.00, T:0.04
Consensus pattern (8 bp):
AAAAACAA
Found at i:10803116 original size:16 final size:15
Alignment explanation
Indices: 10803095--10803159 Score: 54
Period size: 12 Copynumber: 4.6 Consensus size: 15
10803085 GCCCAATTCA
10803095 ATTTTTATCTTGTATT
1 ATTTTTAT-TTGTATT
10803111 ATTTTTA-TT-T-TT
1 ATTTTTATTTGTATT
10803123 ATTTTT-TTT-TATT
1 ATTTTTATTTGTATT
10803136 -TTTTGTATTT-TATT
1 ATTTT-TATTTGTATT
10803150 ATTTATTATT
1 ATTT-TTATT
10803160 ATTATTATGT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
12 15 0.35
13 4 0.09
14 9 0.21
15 7 0.16
16 8 0.19
ACGTcount: A:0.18, C:0.02, G:0.03, T:0.77
Consensus pattern (15 bp):
ATTTTTATTTGTATT
Found at i:10803120 original size:6 final size:6
Alignment explanation
Indices: 10803109--10803167 Score: 50
Period size: 6 Copynumber: 9.7 Consensus size: 6
10803099 TTATCTTGTA
* *
10803109 TTATTT TTATTT TTA-TT TT-TTT TTATTTT TTGTATT TTATTAT TTATTA
1 TTATTT TTATTT TTATTT TTATTT TTA-TTT TTAT-TT TTATT-T TTATTT
*
10803158 TTATTA TTAT
1 TTATTT TTAT
10803168 GTATTAATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
5 8 0.18
6 21 0.47
7 16 0.36
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:10803123 original size:22 final size:22
Alignment explanation
Indices: 10803095--10803138 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10803085 GCCCAATTCA
10803095 ATTTTTATCTTGTATTATTTTT
1 ATTTTTATCTTGTATTATTTTT
* * *
10803117 ATTTTTATTTTTTTTTATTTTT
1 ATTTTTATCTTGTATTATTTTT
10803139 TGTATTTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (22 bp):
ATTTTTATCTTGTATTATTTTT
Found at i:10803164 original size:16 final size:16
Alignment explanation
Indices: 10803107--10803278 Score: 69
Period size: 16 Copynumber: 10.6 Consensus size: 16
10803097 TTTTATCTTG
*
10803107 TATTATTTTTATT-TT
1 TATTATTATTATTATT
*
10803122 TATT-TT-TTTTTATTT
1 TATTATTATTATTA-TT
*
10803137 TTTGTATT-TTATTATT
1 TAT-TATTATTATTATT
*
10803153 TATTATTATTATTATG
1 TATTATTATTATTATT
*
10803169 TATTAATATATGTA-TATC
1 TATT-AT-TAT-TATTATT
10803187 T-TTATTTATTTATTATT
1 TATTA-TTA-TTATTATT
* * *
10803204 T-TTTTTGTTAATATT
1 TATTATTATTATTATT
10803219 TA-TATGTATT-TTATT
1 TATTAT-TATTATTATT
10803234 TA-TA-TAGTTATATATT
1 TATTATTA-TTAT-TATT
*
10803250 TATTATTATATTATAATT
1 TATTA-T-TATTATTATT
10803268 TATTTATTATT
1 TA-TTATTATT
10803279 CTTTTTTTCT
Statistics
Matches: 122, Mismatches: 14, Indels: 40
0.69 0.08 0.23
Matches are distributed among these distances:
13 6 0.05
14 4 0.03
15 31 0.25
16 32 0.26
17 25 0.20
18 13 0.11
19 9 0.07
20 2 0.02
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.69
Consensus pattern (16 bp):
TATTATTATTATTATT
Found at i:10804258 original size:11 final size:10
Alignment explanation
Indices: 10804234--10804382 Score: 50
Period size: 10 Copynumber: 14.4 Consensus size: 10
10804224 CCGCTCCAGG
*
10804234 TTTTTTTTTG
1 TTTTTTTTTA
10804244 TTTTTTTTTA
1 TTTTTTTTTA
* *
10804254 ATTTTATTTA
1 TTTTTTTTTA
*
10804264 TTTATTTGTTA
1 TTT-TTTTTTA
* *
10804275 TATTTATTTA
1 TTTTTTTTTA
*
10804285 TTTATTTATTA
1 TTT-TTTTTTA
* ***
10804296 GATTAGATTTA
1 -TTTTTTTTTA
*
10804307 TTTAATATTTT-
1 TTT--TTTTTTA
* *
10804318 TTTATCTTTA
1 TTTTTTTTTA
*
10804328 TCTTATTTTTA
1 T-TTTTTTTTA
10804339 TTTTTGTTTTA
1 TTTTT-TTTTA
* *
10804350 CTTTTCTTTA
1 TTTTTTTTTA
10804360 -TTTTTTTTA
1 TTTTTTTTTA
* *
10804369 TCTTTATTTA
1 TTTTTTTTTA
10804379 TTTT
1 TTTT
10804383 CACTTTTATT
Statistics
Matches: 98, Mismatches: 32, Indels: 18
0.66 0.22 0.12
Matches are distributed among these distances:
9 11 0.11
10 46 0.47
11 36 0.37
12 5 0.05
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:10804281 original size:21 final size:21
Alignment explanation
Indices: 10804256--10804310 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
10804246 TTTTTTTAAT
* *
10804256 TTTATTTATTTATTTGTTATA
1 TTTATTTATTTATTTATTAGA
10804277 TTTATTTATTTATTTATTAGA
1 TTTATTTATTTATTTATTAGA
*
10804298 TTAGATTTATTTA
1 TT-TATTTATTTA
10804311 ATATTTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 21 0.70
22 9 0.30
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.67
Consensus pattern (21 bp):
TTTATTTATTTATTTATTAGA
Found at i:10804310 original size:4 final size:4
Alignment explanation
Indices: 10804256--10804294 Score: 60
Period size: 4 Copynumber: 9.5 Consensus size: 4
10804246 TTTTTTTAAT
*
10804256 TTTA TTTA TTTA TTTG TTATA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TT
10804295 AGATTAGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 29 0.91
5 3 0.09
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:10804328 original size:47 final size:44
Alignment explanation
Indices: 10804256--10804381 Score: 119
Period size: 47 Copynumber: 2.7 Consensus size: 44
10804246 TTTTTTTAAT
* *
10804256 TTTATTTATTTATTTGTTATATTTATTTATTTATTTATTAG-ATTAGA
1 TTTATTTATTT-TTT-TTATCTTTATTTATTTATTT-TT-GTATTACA
* *
10804303 TTTATTTAATATTTTTTTATCTTTATCTTATTTTTATTTTTGTTTTACT
1 TTTATTT-AT-TTTTTTTATCTTTAT-TTA--TTTATTTTTGTATTACA
*
10804352 TTTCTTTATTTTTTTTATCTTTATTTATTT
1 TTTATTTATTTTTTTTATCTTTATTTATTT
10804382 TCACTTTTAT
Statistics
Matches: 68, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
44 3 0.04
46 3 0.04
47 31 0.46
48 11 0.16
49 13 0.19
50 7 0.10
ACGTcount: A:0.21, C:0.04, G:0.03, T:0.72
Consensus pattern (44 bp):
TTTATTTATTTTTTTTATCTTTATTTATTTATTTTTGTATTACA
Found at i:10804372 original size:15 final size:15
Alignment explanation
Indices: 10804314--10804382 Score: 68
Period size: 15 Copynumber: 4.4 Consensus size: 15
10804304 TTATTTAATA
10804314 TTTTTTTATCTTTAT
1 TTTTTTTATCTTTAT
* *
10804329 CTTATTTTTATTTTTGT
1 -TT-TTTTTATCTTTAT
*
10804346 TTTACTTT-TCTTTAT
1 TTT-TTTTATCTTTAT
10804361 TTTTTTTATCTTTAT
1 TTTTTTTATCTTTAT
10804376 TTATTTT
1 TT-TTTT
10804383 CACTTTTATT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
14 3 0.07
15 18 0.42
16 11 0.26
17 11 0.26
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.78
Consensus pattern (15 bp):
TTTTTTTATCTTTAT
Found at i:10804402 original size:22 final size:22
Alignment explanation
Indices: 10804364--10804405 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
10804354 TCTTTATTTT
10804364 TTTTATCTTTATTTATTTTCAC
1 TTTTATCTTTATTTATTTTCAC
*
10804386 TTTTAT-TTTGTTCTATTTTC
1 TTTTATCTTTATT-TATTTTC
10804406 TTTAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.14, C:0.12, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTATCTTTATTTATTTTCAC
Found at i:10804490 original size:58 final size:58
Alignment explanation
Indices: 10804418--10804635 Score: 323
Period size: 61 Copynumber: 3.7 Consensus size: 58
10804408 TAAATAAAAA
* * *
10804418 TCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAATTT
1 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
* * *
10804476 TCAAAAAAGA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAATCAAAGTT
1 TCAAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAATTT
10804535 TCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
1 TC--AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
*
10804595 TC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
10804636 GAAAGTATCA
Statistics
Matches: 145, Mismatches: 10, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
57 38 0.26
58 45 0.31
59 8 0.06
60 8 0.06
61 46 0.32
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (58 bp):
TCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
Found at i:10804552 original size:119 final size:118
Alignment explanation
Indices: 10804420--10804635 Score: 378
Period size: 119 Copynumber: 1.8 Consensus size: 118
10804410 AATAAAAATC
* *
10804420 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAATTTTCAAAAAAG
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA-
10804485 AATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAATCAAAGTTTCAA
65 AATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAATCAAAGTTTCAA
* *
10804539 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAAAAT
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA
*
10804604 ATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
66 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
10804636 GAAAGTATCA
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
118 31 0.34
119 61 0.66
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (118 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAATCAAAGTTTCAA
Found at i:10804647 original size:72 final size:74
Alignment explanation
Indices: 10804562--10804709 Score: 257
Period size: 74 Copynumber: 2.0 Consensus size: 74
10804552 TGAGGAAAAG
*
10804562 TTGAAAGTATCAATTTTCCTT-AGAAAT-AAATTTTC-AAAAAATATTTTTGGGGAAAAGTTGAA
1 TTGAAAGTATCAATTTTCCTTGA-AAATAAAAGTTTCAAAAAAATATTTTTGGGGAAAAGTTGAA
10804624 AGTATCAATT
65 AGTATCAATT
10804634 TTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAA
1 TTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAA
10804699 GTATCAATT
66 GTATCAATT
10804708 TT
1 TT
10804710 CTCTACACAA
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
72 25 0.35
73 8 0.11
74 39 0.54
ACGTcount: A:0.42, C:0.07, G:0.14, T:0.37
Consensus pattern (74 bp):
TTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAA
GTATCAATT
Found at i:10804658 original size:19 final size:15
Alignment explanation
Indices: 10804619--10804650 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
10804609 TGGGGAAAAG
10804619 TTGAAAGTATCAATT
1 TTGAAAGTATCAATT
10804634 TTGAAAGTATCAATT
1 TTGAAAGTATCAATT
10804649 TT
1 TT
10804651 CCTTGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (15 bp):
TTGAAAGTATCAATT
Found at i:10804661 original size:57 final size:57
Alignment explanation
Indices: 10804421--10804635 Score: 261
Period size: 57 Copynumber: 3.7 Consensus size: 57
10804411 ATAAAAATCA
* * *
10804421 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATTAATTTTCCTTAA-AAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC-AAAGAAATAAATTTTC
* * *** *
10804478 AAAAAAGAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAATCAAAGTTTC
1 AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCAAAGAAAT-AAATTTTC
**
10804537 AAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
1 ---AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCAAAGAAATAAATTTTC
*
10804597 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
10804636 GAAAGTATCA
Statistics
Matches: 140, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
57 45 0.32
58 35 0.25
59 7 0.05
60 7 0.05
61 40 0.29
62 6 0.04
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCAAAGAAATAAATTTTC
Found at i:10807531 original size:49 final size:49
Alignment explanation
Indices: 10807478--10807719 Score: 281
Period size: 50 Copynumber: 4.9 Consensus size: 49
10807468 TCAAAAACAA
*
10807478 ATGAGAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGAAGCTTTTCCAAG
1 ATGAGAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCCAAG
* * *
10807527 ATGAGATTTTTTAAAGTTGTTGAGCCTCTGTTGAGAGGACCTTTTCCAAA
1 ATGAGA-ATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCCAAG
* ** * *
10807577 ATGAGAATTTTAAAAGTTGTTGAGCCTTTACTGAAAGGTGCTTTTCCAAG
1 ATGAGAATTTT-AAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCCAAG
* ** * * *
10807627 ATGAGAATTTAAAAGTTGTTGAGAATCTATTGAGATGAGCTTTTTCAAG
1 ATGAGAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCCAAG
* *
10807676 AT-TGAATTTTAAAGTTATTGAGCCTCTGCTT-AGAGGAGTCTTTT
1 ATGAGAATTTTAAAGTTGTTGAGCCTCTG-TTGAGAGGAG-CTTTT
10807720 GAATTTTTAA
Statistics
Matches: 161, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
48 26 0.16
49 49 0.30
50 86 0.53
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (49 bp):
ATGAGAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCCAAG
Found at i:10807582 original size:99 final size:98
Alignment explanation
Indices: 10807476--10807705 Score: 282
Period size: 99 Copynumber: 2.3 Consensus size: 98
10807466 TTTCAAAAAC
* * * *
10807476 AAATGAGAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGAAGCTTTTCCAAGATGAGATTTTTTAA
1 AAATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAAAGAAGCTTTTCCAAGATGAGA-ATTTAAA
** *
10807541 AGTTGTTGAGCCTCTGTTGAGAGGACCTTTTCCA
65 AGTTGTTGAGAATCTATTGAGAGGACCTTTTCCA
* * **
10807575 AAATGAGAATTTTAAAAGTTGTTGAGCCTTTACTGAAAGGTGCTTTTCCAAGATGAGAATTTAAA
1 AAATGAGAATTTT-AAAGTTGTTGAGCCTCTGCTGAAAGAAGCTTTTCCAAGATGAGAATTTAAA
* * *
10807640 AGTTGTTGAGAATCTATTGAGATGAGCTTTTTCA
65 AGTTGTTGAGAATCTATTGAGAGGACCTTTTCCA
* * *
10807674 AGAT-TGAATTTTAAAGTTATTGAGCCTCTGCT
1 AAATGAGAATTTTAAAGTTGTTGAGCCTCTGCT
10807706 TAGAGGAGTC
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
97 17 0.15
98 7 0.06
99 49 0.44
100 38 0.34
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (98 bp):
AAATGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAAAGAAGCTTTTCCAAGATGAGAATTTAAAA
GTTGTTGAGAATCTATTGAGAGGACCTTTTCCA
Found at i:10807912 original size:22 final size:22
Alignment explanation
Indices: 10807887--10807937 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
10807877 TAATTATTAT
*
10807887 TTTTTTTCTTT-TTCTTTCTTTC
1 TTTTTTTCTTTCTT-TTTCCTTC
10807909 TTTTTTTCTTTCTTTTTCCTTC
1 TTTTTTTCTTTCTTTTTCCTTC
10807931 TTTTTTT
1 TTTTTTT
10807938 TCCTTATCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 25 0.93
23 2 0.07
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (22 bp):
TTTTTTTCTTTCTTTTTCCTTC
Found at i:10807922 original size:26 final size:24
Alignment explanation
Indices: 10807886--10807938 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 24
10807876 TTAATTATTA
*
10807886 TTTTTTTTCTTTTTCTTTCTTTCTT
1 TTTTTTTTCTTTTTCCTTCTTT-TT
10807911 TTTTTCTTTCTTTTTCCTTCTTTTT
1 TTTTT-TTTCTTTTTCCTTCTTTTT
10807936 TTT
1 TTT
10807939 CCTTATCCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (24 bp):
TTTTTTTTCTTTTTCCTTCTTTTT
Found at i:10808111 original size:23 final size:23
Alignment explanation
Indices: 10808077--10808120 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
10808067 GGTTGAAACA
*
10808077 TGGGATTCGAATCCTAAAAAATC
1 TGGGATTCGAATCCCAAAAAATC
*
10808100 TGGGATTTGAATCCCAAAAAA
1 TGGGATTCGAATCCCAAAAAA
10808121 AAAACTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (23 bp):
TGGGATTCGAATCCCAAAAAATC
Found at i:10808178 original size:11 final size:11
Alignment explanation
Indices: 10808162--10808187 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
10808152 GTATTTTTTC
10808162 AAAAAAAATAA
1 AAAAAAAATAA
10808173 AAAAAAAATAA
1 AAAAAAAATAA
10808184 AAAA
1 AAAA
10808188 GCAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAATAA
Found at i:10808902 original size:21 final size:20
Alignment explanation
Indices: 10808835--10808903 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
10808825 AAAAAATTTT
*
10808835 TATTTTCATT-TTATTTTAA
1 TATTTTAATTATTATTTTAA
* **
10808854 TATTTGTTTATATATTATTTTTGT
1 TA-TT-TTAAT-TATTA-TTTTAA
10808878 TATTTTAATTATTATTCTTAA
1 TATTTTAATTATTATT-TTAA
10808899 TATTT
1 TATTT
10808904 ATGCATGTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
19 2 0.05
20 4 0.11
21 16 0.42
22 5 0.13
23 5 0.13
24 6 0.16
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (20 bp):
TATTTTAATTATTATTTTAA
Found at i:10808978 original size:13 final size:14
Alignment explanation
Indices: 10808954--10808987 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
10808944 ATTGTTTTAT
*
10808954 AATATAATTAATAA
1 AATATAAGTAATAA
10808968 AA-ATAAGTAATAA
1 AATATAAGTAATAA
10808981 AATATAA
1 AATATAA
10808988 TAAATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (14 bp):
AATATAAGTAATAA
Found at i:10809275 original size:18 final size:18
Alignment explanation
Indices: 10809232--10809278 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
10809222 TTTCTTTTTG
10809232 TTAA-TAATAAATAAAAA
1 TTAAGTAATAAATAAAAA
* *
10809249 TTAATTAATAAATTAAGAA
1 TTAAGTAATAAA-TAAAAA
10809268 -TAAGTAATAAA
1 TTAAGTAATAAA
10809279 AATGAGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 4 0.15
18 17 0.65
19 5 0.19
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (18 bp):
TTAAGTAATAAATAAAAA
Found at i:10810078 original size:3 final size:3
Alignment explanation
Indices: 10810070--10810097 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
10810060 CAGGCGGACA
10810070 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10810098 TATTTTAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:10811171 original size:3 final size:3
Alignment explanation
Indices: 10811163--10811224 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
10811153 TTAAAGTCTT
10811163 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
10811211 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
10811225 CAAACCTTTA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:10814157 original size:15 final size:13
Alignment explanation
Indices: 10814128--10814167 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 13
10814118 TGATACTTTC
10814128 AATTTTTTCTTAAA
1 AATTTTTT-TTAAA
10814142 AATATATTTTTTAAA
1 AAT-T-TTTTTTAAA
10814157 AATTTTTTTTA
1 AATTTTTTTTA
10814168 TTTTCAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.29
14 4 0.17
15 9 0.38
16 4 0.17
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (13 bp):
AATTTTTTTTAAA
Found at i:10814181 original size:64 final size:64
Alignment explanation
Indices: 10814111--10814276 Score: 230
Period size: 64 Copynumber: 2.6 Consensus size: 64
10814101 TAACTTCAAG
*
10814111 AAAAAATTGATACTTTCAATTTTTTCTTAAAAATATATTTTTT-AAAAA-TTTTTTTTATTTTCA
1 AAAAAATTGATACTTTCAA-TTTTCCTTAAAAATATATTTTTTAAAAAATTTTTTTTTATTTTCA
* *
10814174 AAGAAAATTGATACTTTCAACTTTCCCTAAAAA-ATATTTTTTAAAAAATTTTTTTTTATTTTCA
1 AA-AAAATTGATACTTTCAATTTTCCTTAAAAATATATTTTTTAAAAAATTTTTTTTTATTTTCA
* *
10814238 GAAAAATTGATACTTTTAACTTTTCCTTAAAATATATAT
1 AAAAAATTGATACTTTCAA-TTTTCCTTAAAA-ATATAT
10814277 ATATATATTT
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
62 9 0.10
63 33 0.37
64 43 0.48
65 1 0.01
66 4 0.04
ACGTcount: A:0.39, C:0.09, G:0.03, T:0.49
Consensus pattern (64 bp):
AAAAAATTGATACTTTCAATTTTCCTTAAAAATATATTTTTTAAAAAATTTTTTTTTATTTTCA
Done.