Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 71 of 147
Found at i:13419729 original size:3 final size:3
Alignment explanation
Indices: 13419721--13419815 Score: 52
Period size: 3 Copynumber: 31.0 Consensus size: 3
13419711 AAAATGTAAA
* *
13419721 TAT TAT TAT GTAT TAT AAT TAT TAT ATAT TAT AAT TAT TAT GT-T TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT
* * * * * *
13419768 TATT TAT TA- CATT TAT TA- AAA TAT TAT TAG AAT TAT TAT TTT TAT
1 TA-T TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
13419813 TAT
1 TAT
13419816 AAAAGTAATA
Statistics
Matches: 69, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
2 3 0.04
3 55 0.80
4 11 0.16
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:13419745 original size:9 final size:9
Alignment explanation
Indices: 13419721--13419817 Score: 58
Period size: 9 Copynumber: 10.9 Consensus size: 9
13419711 AAAATGTAAA
*
13419721 TATTATTAT
1 TATTATAAT
13419730 GTATTATAAT
1 -TATTATAAT
13419740 TATTAT-A-
1 TATTATAAT
13419747 TATTATAAT
1 TATTATAAT
**
13419756 TATTATGTT
1 TATTATAAT
13419765 TATTAT--T
1 TATTATAAT
* *
13419772 TATTACATT
1 TATTATAAT
*
13419781 TATTAAAATAT
1 TATT-ATA-AT
*
13419792 TATTAGAAT
1 TATTATAAT
**
13419801 TATTATTTT
1 TATTATAAT
13419810 TATTATAA
1 TATTATAA
13419818 AAGTAATAAA
Statistics
Matches: 69, Mismatches: 12, Indels: 13
0.73 0.13 0.14
Matches are distributed among these distances:
7 12 0.17
8 2 0.03
9 38 0.55
10 12 0.17
11 5 0.07
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (9 bp):
TATTATAAT
Found at i:13419745 original size:19 final size:17
Alignment explanation
Indices: 13419698--13419816 Score: 59
Period size: 16 Copynumber: 6.9 Consensus size: 17
13419688 TTAATAAATA
* *
13419698 ATAATTATTTATTAAAAT
1 ATAATTA-TTATTATATT
* *
13419716 GTAAATATTATTATGTATT
1 ATAATTATTATTA--TATT
13419735 ATAATTATTA-TATATT
1 ATAATTATTATTATATT
*
13419751 ATAATTATTATGTTTATT
1 ATAATTATTAT-TATATT
13419769 AT--TTATTACATT-TATT
1 ATAATTATT--ATTATATT
* *
13419785 A-AAATATTATTAGAATT
1 ATAATTATTATTA-TATT
* *
13419802 ATTATTTTTATTATA
1 ATAATTATTATTATA
13419817 AAAGTAATAA
Statistics
Matches: 77, Mismatches: 13, Indels: 23
0.68 0.12 0.20
Matches are distributed among these distances:
15 3 0.04
16 24 0.31
17 16 0.21
18 24 0.31
19 10 0.13
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.55
Consensus pattern (17 bp):
ATAATTATTATTATATT
Found at i:13419776 original size:16 final size:16
Alignment explanation
Indices: 13419722--13419767 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
13419712 AAATGTAAAT
13419722 ATTATTATGTATTATA
1 ATTATTATGTATTATA
*
13419738 ATTATTATATATTATA
1 ATTATTATGTATTATA
13419754 ATTATTATGT-TTAT
1 ATTATTATGTATTAT
13419768 TATTTATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
15 4 0.14
16 24 0.86
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (16 bp):
ATTATTATGTATTATA
Found at i:13422603 original size:14 final size:14
Alignment explanation
Indices: 13422584--13422612 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13422574 CTTAACATGG
13422584 ATGAACCAAGTTTC
1 ATGAACCAAGTTTC
13422598 ATGAACCAAGTTTC
1 ATGAACCAAGTTTC
13422612 A
1 A
13422613 CTAAACTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.28
Consensus pattern (14 bp):
ATGAACCAAGTTTC
Found at i:13427176 original size:11 final size:11
Alignment explanation
Indices: 13427162--13427191 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
13427152 TTTTATATTA
13427162 ATAATATAAAT
1 ATAATATAAAT
13427173 ATAATATAAAT
1 ATAATATAAAT
13427184 ATTAATAT
1 A-TAATAT
13427192 CAGTCCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
ATAATATAAAT
Found at i:13428945 original size:38 final size:38
Alignment explanation
Indices: 13428903--13428975 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
13428893 GATTTAAATT
* * * *
13428903 CTCTAATAGTTTGATATGATTAAAAAATTTATTAAGTC
1 CTCTAATAATTTAATAGGATTAAAAAATTCATTAAGTC
13428941 CTCTAATAATTTAATAGGATTAAAAAATTCATTAA
1 CTCTAATAATTTAATAGGATTAAAAAATTCATTAA
13428976 ATTTTTCAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (38 bp):
CTCTAATAATTTAATAGGATTAAAAAATTCATTAAGTC
Found at i:13455725 original size:130 final size:131
Alignment explanation
Indices: 13455469--13455725 Score: 301
Period size: 130 Copynumber: 2.0 Consensus size: 131
13455459 TCGTAACGCC
* * * * * *
13455469 AACAAAAAGTTGTTGCGAAAACTTGTTTTATTTGTAATGATTTTTTCATTACCGTTGCTTAATTA
1 AACAAAAAGTTGCTACAAAAAATTGTTTTATTTGTAATAATTTTTTCATAACCGTTGCTTAATTA
* * *
13455534 TTTTTTAATATTTTATATAAAGACAAAAAACTTTGTTACAAAAAATTCTATCATATTTGTAACCA
66 TTTTTTAATATTTTATATAAAGACAAAAAACGTTGCTACAAAAAATTCTATAATATTTGTAACCA
13455599 T
131 T
*
13455600 AACAAAAAGTTGCTACAAAAAATT-TTTTATTTGTAATAATTTTTT-A-AAGTCGTTGCTTAAGT
1 AACAAAAAGTTGCTACAAAAAATTGTTTTATTTGTAATAATTTTTTCATAA-CCGTTGCTTAA--
* * * *
13455662 TTATTTTTTTATTATTTTATTTAATGACAAAAAA-GTTGCTA-TAAAAA-TCTTATAATATTTGT
63 TTA-TTTTTTAATATTTTATATAAAGACAAAAAACGTTGCTACAAAAAATTC-TATAATATTTGT
13455724 AA
126 AA
13455726 TGACAATAAA
Statistics
Matches: 107, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
128 1 0.01
129 13 0.12
130 38 0.36
131 28 0.26
132 27 0.25
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.45
Consensus pattern (131 bp):
AACAAAAAGTTGCTACAAAAAATTGTTTTATTTGTAATAATTTTTTCATAACCGTTGCTTAATTA
TTTTTTAATATTTTATATAAAGACAAAAAACGTTGCTACAAAAAATTCTATAATATTTGTAACCA
T
Found at i:13457078 original size:30 final size:31
Alignment explanation
Indices: 13457044--13457108 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 31
13457034 TTTCAATTTT
13457044 GGGGTTTGGATTTAAAGG-TTGGGATTTTAG
1 GGGGTTTGGATTTAAAGGATTGGGATTTTAG
* *
13457074 GGGGTTTGGATTTAAGGGATTTTGGATTTTAG
1 GGGGTTTGGATTTAAAGGA-TTGGGATTTTAG
13457106 GGG
1 GGG
13457109 TTTTAGAGTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 17 0.55
32 14 0.45
ACGTcount: A:0.18, C:0.00, G:0.42, T:0.40
Consensus pattern (31 bp):
GGGGTTTGGATTTAAAGGATTGGGATTTTAG
Found at i:13457112 original size:16 final size:16
Alignment explanation
Indices: 13457008--13457112 Score: 85
Period size: 16 Copynumber: 6.9 Consensus size: 16
13456998 GAAGATTCGA
13457008 ATTTTA-GGGTTTTGG
1 ATTTTAGGGGTTTTGG
* * **
13457023 CTTTTAAGGGTTTTCA
1 ATTTTAGGGGTTTTGG
13457039 ATTTT-GGGG-TTTGG
1 ATTTTAGGGGTTTTGG
** *
13457053 A-TTTAAAGG-TTGGG
1 ATTTTAGGGGTTTTGG
*
13457067 ATTTTAGGGGGTTTGG
1 ATTTTAGGGGTTTTGG
* *
13457083 ATTTAAGGGATTTTGG
1 ATTTTAGGGGTTTTGG
13457099 ATTTTAGGGGTTTT
1 ATTTTAGGGGTTTT
13457113 AGAGTCCTAA
Statistics
Matches: 68, Mismatches: 18, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
13 3 0.04
14 11 0.16
15 14 0.21
16 40 0.59
ACGTcount: A:0.17, C:0.02, G:0.33, T:0.48
Consensus pattern (16 bp):
ATTTTAGGGGTTTTGG
Found at i:13458526 original size:23 final size:23
Alignment explanation
Indices: 13458500--13458546 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
13458490 TGGTGGCTAT
13458500 ACAGGGGACTGGTCAGGGGCTGG
1 ACAGGGGACTGGTCAGGGGCTGG
** *
13458523 ACAGGGGGTTGGTCGGGGGCTGG
1 ACAGGGGACTGGTCAGGGGCTGG
13458546 A
1 A
13458547 TAGGTGCATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.55, T:0.15
Consensus pattern (23 bp):
ACAGGGGACTGGTCAGGGGCTGG
Found at i:13458630 original size:3 final size:3
Alignment explanation
Indices: 13458618--13458660 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
13458608 TTTTTAAATA
* * *
13458618 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAA AAT TAT TAA TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
13458661 AACTGAAATG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:13459112 original size:19 final size:21
Alignment explanation
Indices: 13459074--13459125 Score: 72
Period size: 19 Copynumber: 2.5 Consensus size: 21
13459064 ATAGAAACTC
13459074 TTATTTATGATTTTTAAATTATT
1 TTATTTAT-A-TTTTAAATTATT
13459097 TTA-TTATATTTT-AATTATT
1 TTATTTATATTTTAAATTATT
13459116 TTATTTATAT
1 TTATTTATAT
13459126 ATCAAAATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.36
20 10 0.36
21 1 0.04
22 4 0.14
23 3 0.11
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TTATTTATATTTTAAATTATT
Found at i:13460134 original size:15 final size:15
Alignment explanation
Indices: 13460114--13460143 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13460104 GCTTCATAAA
*
13460114 AAAAAATATCTTTTT
1 AAAAAATATATTTTT
13460129 AAAAAATATATTTTT
1 AAAAAATATATTTTT
13460144 GATTTCTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
AAAAAATATATTTTT
Found at i:13460207 original size:64 final size:62
Alignment explanation
Indices: 13460105--13460230 Score: 207
Period size: 64 Copynumber: 2.0 Consensus size: 62
13460095 TACAAATGGG
* *
13460105 CTTCATAAAAAAAAATATCTTTTTAAAAAATATATTTTTGATTTCTTTTTAAAAAATTATAA
1 CTTCATAAAAAAAAAAATCTTTTTAAAAAAAATATTTTTGATTTCTTTTTAAAAAATTATAA
*
13460167 CTTCATAAAAAAGGAAAAATCTTTTTAAAAAAAATCTTTTTGATTTCTTTTTAAAAAATTATAA
1 CTTCATAAAAAA--AAAAATCTTTTTAAAAAAAATATTTTTGATTTCTTTTTAAAAAATTATAA
13460231 AATATAATAA
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
62 12 0.20
64 47 0.80
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.43
Consensus pattern (62 bp):
CTTCATAAAAAAAAAAATCTTTTTAAAAAAAATATTTTTGATTTCTTTTTAAAAAATTATAA
Found at i:13473469 original size:20 final size:19
Alignment explanation
Indices: 13473423--13473495 Score: 60
Period size: 19 Copynumber: 3.8 Consensus size: 19
13473413 TAGGCAGGGA
13473423 AAATTATTATTATTATTTT
1 AAATTATTATTATTATTTT
*
13473442 AAAGTATT-TTAATATATTTT
1 AAATTATTATT-AT-TATTTT
* *
13473462 TAATTATTATT-TGTTTTTT
1 AAATTATTATTAT-TATTTT
**
13473481 ATTTTATTATTATTA
1 AAATTATTATTATTA
13473496 AAACGATTAA
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
18 2 0.05
19 24 0.59
20 13 0.32
21 2 0.05
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
AAATTATTATTATTATTTT
Found at i:13474617 original size:1 final size:1
Alignment explanation
Indices: 13474606--13474662 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
13474596 CTAATTCTCG
* * * * * * *
13474606 TTTTGTTTTTTTGTTTGTTTTGTTTTTTTTTGTTTTTTTTATTTTTTTTTATTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
13474663 GTTTGTTTTG
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.04, C:0.00, G:0.09, T:0.88
Consensus pattern (1 bp):
T
Found at i:13474628 original size:9 final size:9
Alignment explanation
Indices: 13474605--13474674 Score: 65
Period size: 9 Copynumber: 7.9 Consensus size: 9
13474595 TCTAATTCTC
13474605 GTTTTGTTT
1 GTTTTGTTT
13474614 -TTTTGTTT
1 GTTTTGTTT
13474622 GTTTTGTTTT
1 GTTTTG-TTT
*
13474632 TTTTTGTTT
1 GTTTTGTTT
* *
13474641 TTTTTATTT
1 GTTTTGTTT
13474650 -TTTT-TTAT
1 GTTTTGTT-T
*
13474658 TTTTTGTTT
1 GTTTTGTTT
13474667 GTTTTGTT
1 GTTTTGTT
13474675 AAATATTATT
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
7 2 0.04
8 13 0.25
9 28 0.53
10 10 0.19
ACGTcount: A:0.03, C:0.00, G:0.13, T:0.84
Consensus pattern (9 bp):
GTTTTGTTT
Found at i:13474636 original size:10 final size:10
Alignment explanation
Indices: 13474611--13474671 Score: 72
Period size: 10 Copynumber: 6.2 Consensus size: 10
13474601 TCTCGTTTTG
13474611 TTTTTTTG-T
1 TTTTTTTGTT
*
13474620 TTGTTTTGTT
1 TTTTTTTGTT
13474630 TTTTTTTG-T
1 TTTTTTTGTT
*
13474639 TTTTTTTATT
1 TTTTTTTGTT
*
13474649 TTTTTTTATT
1 TTTTTTTGTT
13474659 TTTTGTTTGTT
1 TTTT-TTTGTT
13474670 TT
1 TT
13474672 GTTAAATATT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
9 15 0.33
10 23 0.51
11 7 0.16
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:13474660 original size:19 final size:19
Alignment explanation
Indices: 13474611--13474662 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
13474601 TCTCGTTTTG
* *
13474611 TTTTTTTGTTTGTTTTGTT
1 TTTTTTTGTTTTTTTTATT
13474630 TTTTTTTGTTTTTTTTATT
1 TTTTTTTGTTTTTTTTATT
*
13474649 TTTTTTTATTTTTT
1 TTTTTTTGTTTTTT
13474663 GTTTGTTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.04, C:0.00, G:0.08, T:0.88
Consensus pattern (19 bp):
TTTTTTTGTTTTTTTTATT
Found at i:13475148 original size:95 final size:95
Alignment explanation
Indices: 13474894--13475720 Score: 1039
Period size: 95 Copynumber: 8.8 Consensus size: 95
13474884 GGCTCTTTTT
* * * * *
13474894 AACAGAGGCT-CATCAACTTTAAAAATTTTCATCTAGAAAAAGCTCCTCTCAACAGAGGCTCCAC
1 AACAGAGGCTCCA-CAACTTT-AAAA-TCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAAC
*
13474958 AACTTTAAAAATCTCATCTTGGAAAAGCTCCTCTC
63 AACTTT-AAAATCTCATC-TGAAAAAGCTCCTCTC
* * *
13474993 AGCAGAGGCTCCACAACTTTAAAATTCTTATCTTGGAAAAGCCCCTCTCAGCAGAGGCTCAACAA
1 AACAGAGGCTCCACAACTTTAAAA-TCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAA
* *
13475058 CTTTAAAATCTCATCTGAAAAAGTTTCTCTC
65 CTTTAAAATCTCATCTGAAAAAGCTCCTCTC
* *
13475089 AACAGAGGCTCCACAACTTTAAAATCTCATCTTAGAAAAGCTCCTCTCAGCAGAAGCTCAACAAC
1 AACAGAGGCTCCACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAAC
13475154 TTTAAAATCTCATCT-AGAAAAGCTCCTCTC
66 TTTAAAATCTCATCTGA-AAAAGCTCCTCTC
* *
13475184 AACAGAGGCTCCACAACTTTAAAATTCTCATCTTGGAAAAGCTCCTCCCAGCAGAGACTCAACAA
1 AACAGAGGCTCCACAACTTTAAAA-TCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAA
*
13475249 CTTTAAAATCTCATCTGGAAAAGCTCCTCTC
65 CTTTAAAATCTCATCTGAAAAAGCTCCTCTC
* * * *
13475280 AACAGAGGCTCCACAACTTTAAAATCTTATCTTGAAAAAGCTCTTTTCAGCAGAGGCTCAACAAC
1 AACAGAGGCTCCACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAAC
*
13475345 TTTAAAATCTCATCTGGAAAAGCTCCTCTC
66 TTTAAAATCTCATCTGAAAAAGCTCCTCTC
*
13475375 AACAGAGGCTCCACAACTTTAAAATTCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCCACAA
1 AACAGAGGCTCCACAACTTTAAAA-TCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAA
*
13475440 CTTTAAAATCTCATCTTGGAAAAGCTCCTCTC
65 CTTTAAAATCTCATC-TGAAAAAGCTCCTCTC
* *
13475472 AACAGAGGCTTCACAACTTT---A----A------AAAAGCTCCTCTCAACAGAGGCTTC-ACAA
1 AACAGAGGCTCCACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGC-TCAACAA
* * * * *
13475523 CTTTAAAAAAGCTCCTCTCAACAGAG--GCT-TC
65 CTTT--AAAATCTCATCTGAA-AAAGCTCCTCTC
** * *
13475554 -ACA-ACTTCTTCACAACTTTAAAATCTCATCTTCGAAAAGCTCCTCTCAGCAGAGGCTCAACAA
1 AACAGA-GGCTCCACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAA
13475617 CTTTAAAATCTCATCTGAAAAAGCTCCTCTC
65 CTTTAAAATCTCATCTGAAAAAGCTCCTCTC
* * *
13475648 AACAGAGGCTCCACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAACAGAGTCTCCACAAC
1 AACAGAGGCTCCACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAAC
13475713 TTTAAAAT
66 TTTAAAAT
13475721 TTTCATCTTG
Statistics
Matches: 641, Mismatches: 57, Indels: 64
0.84 0.07 0.08
Matches are distributed among these distances:
80 1 0.00
81 15 0.02
82 2 0.00
83 31 0.05
84 5 0.01
85 12 0.02
88 1 0.00
89 1 0.00
91 3 0.00
92 12 0.02
93 4 0.01
94 33 0.05
95 239 0.37
96 176 0.27
97 46 0.07
98 42 0.07
99 16 0.02
100 2 0.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.26
Consensus pattern (95 bp):
AACAGAGGCTCCACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAAC
TTTAAAATCTCATCTGAAAAAGCTCCTCTC
Found at i:13475222 original size:191 final size:191
Alignment explanation
Indices: 13474894--13475720 Score: 1086
Period size: 191 Copynumber: 4.4 Consensus size: 191
13474884 GGCTCTTTTT
* *
13474894 AACAGAGGCT-CATCAACTTTAAAAATTTTCATC-TAGAAAAAGCTCCTCTCAACAGAGGCTCCA
1 AACAGAGGCTCCA-CAACTTT-AAAA-TCTCATCTTAG-AAAAGCTCCTCTCAACAGAGGCTCAA
* *
13474957 CAACTTTAAAAATCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAATTCTT
62 CAACTTT-AAAATCTCATC-TGGAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTC
* * *
13475022 ATCTTGGAAAAGCCCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTGAAAAAGTTTCTC
125 ATCTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTGAAAAAGCTCCTC
13475087 TC
190 TC
* *
13475089 AACAGAGGCTCCACAACTTTAAAATCTCATCTTAGAAAAGCTCCTCTCAGCAGAAGCTCAACAAC
1 AACAGAGGCTCCACAACTTTAAAATCTCATCTTAGAAAAGCTCCTCTCAACAGAGGCTCAACAAC
*
13475154 TTTAAAATCTCATCTAGAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTG
66 TTTAAAATCTCATCTGGAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTG
* * *
13475219 GAAAAGCTCCTCCCAGCAGAGACTCAACAACTTTAAAATCTCATCTGGAAAAGCTCCTCTC
131 GAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTGAAAAAGCTCCTCTC
* * * *
13475280 AACAGAGGCTCCACAACTTTAAAATCTTATCTT-GAAAAAGCTCTTTTCAGCAGAGGCTCAACAA
1 AACAGAGGCTCCACAACTTTAAAATCTCATCTTAG-AAAAGCTCCTCTCAACAGAGGCTCAACAA
13475344 CTTTAAAATCTCATCTGGAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTT
65 CTTTAAAATCTCATCTGGAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTT
* *
13475409 GGAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTC
130 GGAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATC-TGAAAAAGCTCCTCTC
*
13475472 AACAGAGGCTTCACAAC--T----T-T-A----A-AAAAGCTCCTCTCAACAGAGGCTTC-ACAA
1 AACAGAGGCTCCACAACTTTAAAATCTCATCTTAGAAAAGCTCCTCTCAACAGAGGC-TCAACAA
* * * * *** ** *
13475523 CTTTAAAAAAGCTCCTCT-CAACAGAGGCT-TC-ACA-ACTTCTTCACAACTTTAAAA-TCTCAT
65 CTTT--AAAATCTCATCTGGAAAAGCTCCTCTCAACAGA-GGCTCCACAACTTTAAAATTCTCAT
*
13475583 CTTCGAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTGAAAAAGCTCCTCTC
127 CTTGGAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTGAAAAAGCTCCTCTC
* * *
13475648 AACAGAGGCTCCACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAACAGAGTCTCCACAAC
1 AACAGAGGCTCCACAACTTTAAAATCTCATCTTAGAAAAGCTCCTCTCAACAGAGGCTCAACAAC
13475713 TTTAAAAT
66 TTTAAAAT
13475721 TTTCATCTTG
Statistics
Matches: 567, Mismatches: 42, Indels: 54
0.86 0.06 0.08
Matches are distributed among these distances:
176 31 0.05
177 54 0.10
178 19 0.03
179 29 0.05
180 8 0.01
181 10 0.02
182 1 0.00
183 1 0.00
184 2 0.00
185 1 0.00
186 1 0.00
187 4 0.01
188 2 0.00
189 29 0.05
190 2 0.00
191 268 0.47
192 43 0.08
193 36 0.06
194 7 0.01
195 17 0.03
196 2 0.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.26
Consensus pattern (191 bp):
AACAGAGGCTCCACAACTTTAAAATCTCATCTTAGAAAAGCTCCTCTCAACAGAGGCTCAACAAC
TTTAAAATCTCATCTGGAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTG
GAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTGAAAAAGCTCCTCTC
Found at i:13475498 original size:35 final size:35
Alignment explanation
Indices: 13475459--13475560 Score: 204
Period size: 35 Copynumber: 2.9 Consensus size: 35
13475449 CTCATCTTGG
13475459 AAAAGCTCCTCTCAACAGAGGCTTCACAACTTTAA
1 AAAAGCTCCTCTCAACAGAGGCTTCACAACTTTAA
13475494 AAAAGCTCCTCTCAACAGAGGCTTCACAACTTTAA
1 AAAAGCTCCTCTCAACAGAGGCTTCACAACTTTAA
13475529 AAAAGCTCCTCTCAACAGAGGCTTCACAACTT
1 AAAAGCTCCTCTCAACAGAGGCTTCACAACTT
13475561 CTTCACAACT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.36, C:0.29, G:0.12, T:0.23
Consensus pattern (35 bp):
AAAAGCTCCTCTCAACAGAGGCTTCACAACTTTAA
Found at i:13475708 original size:48 final size:48
Alignment explanation
Indices: 13475564--13475730 Score: 264
Period size: 48 Copynumber: 3.5 Consensus size: 48
13475554 ACAACTTCTT
* *
13475564 CACAACTTTAAAATCTCATCTTCGAAAAGCTCCTCTCAGCAGAGGCTC
1 CACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAACAGAGGCTC
* *
13475612 AACAACTTTAAAATCTCATC-TGAAAAAGCTCCTCTCAACAGAGGCTC
1 CACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAACAGAGGCTC
*
13475659 CACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAACAGAGTCTC
1 CACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAACAGAGGCTC
*
13475707 CACAACTTTAAAATTTTCATCTTG
1 CACAACTTTAAAA-TCTCATCTTG
13475731 TTTTCAAATT
Statistics
Matches: 109, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
47 43 0.39
48 57 0.52
49 9 0.08
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (48 bp):
CACAACTTTAAAATCTCATCTTGGAAAAGCTCCTCTCAACAGAGGCTC
Found at i:13488340 original size:37 final size:38
Alignment explanation
Indices: 13488253--13488352 Score: 105
Period size: 37 Copynumber: 2.7 Consensus size: 38
13488243 GATCAACGCT
* * **
13488253 GGTCCGGACGGTCTGACCGGTTCAGCGGTTGGATCGGC
1 GGTCCGGACGATCTGACCGGTTCAGCGGTCGGATCAAC
* *
13488291 GGTTCGGGCGATCTGACCGGTTC-GAC-GTCGGATCAAC
1 GGTCCGGACGATCTGACCGGTTCAG-CGGTCGGATCAAC
* *
13488328 GGTCCGGACGATCTAACTGGTTCAG
1 GGTCCGGACGATCTGACCGGTTCAG
13488353 TCCGTCCACT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
37 28 0.56
38 22 0.44
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (38 bp):
GGTCCGGACGATCTGACCGGTTCAGCGGTCGGATCAAC
Found at i:13489209 original size:10 final size:10
Alignment explanation
Indices: 13489196--13489241 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
13489186 TCTAATTCTC
13489196 GTTTTTTTTT
1 GTTTTTTTTT
13489206 G-TTTTTTTT
1 GTTTTTTTTT
* *
13489215 GGTTTTTCTT
1 GTTTTTTTTT
13489225 GTTTTTTTTT
1 GTTTTTTTTT
13489235 GGTTTTT
1 -GTTTTT
13489242 GTTTATTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 9 0.29
10 16 0.52
11 6 0.19
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (10 bp):
GTTTTTTTTT
Found at i:13489221 original size:20 final size:21
Alignment explanation
Indices: 13489196--13489241 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
13489186 TCTAATTCTC
*
13489196 GTTTTTTTTTG-TTTTTTTTG
1 GTTTTTTCTTGTTTTTTTTTG
13489216 G-TTTTTCTTGTTTTTTTTTG
1 GTTTTTTCTTGTTTTTTTTTG
13489236 GTTTTT
1 GTTTTT
13489242 GTTTATTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 11 0.48
21 4 0.17
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (21 bp):
GTTTTTTCTTGTTTTTTTTTG
Found at i:13489250 original size:10 final size:9
Alignment explanation
Indices: 13489198--13489253 Score: 60
Period size: 9 Copynumber: 6.2 Consensus size: 9
13489188 TAATTCTCGT
13489198 TTTTTTTTG
1 TTTTTTTTG
13489207 TTTTTTTTGG
1 TTTTTTTT-G
*
13489217 TTTTTCTTG
1 TTTTTTTTG
13489226 TTTTTTTT-
1 TTTTTTTTG
**
13489234 TGGTTTTTG
1 TTTTTTTTG
*
13489243 TTTATTTTG
1 TTTTTTTTG
13489252 TT
1 TT
13489254 AAATATTATT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
8 6 0.16
9 24 0.63
10 8 0.21
ACGTcount: A:0.02, C:0.02, G:0.14, T:0.82
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:13489250 original size:29 final size:28
Alignment explanation
Indices: 13489191--13489250 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
13489181 TTCTGTCTAA
*
13489191 TTCTCGTTTTTTTTTGTTTTTTTTGGTTT
1 TTCTCGTTTTTTTTTGTTTTTTTT-GATT
*
13489220 TTCTTGTTTTTTTTTGGTTTTTGTTT-ATT
1 TTCTCGTTTTTTTTT-GTTTTT-TTTGATT
13489249 TT
1 TT
13489251 GTTAAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 18 0.67
30 6 0.22
31 3 0.11
ACGTcount: A:0.02, C:0.05, G:0.13, T:0.80
Consensus pattern (28 bp):
TTCTCGTTTTTTTTTGTTTTTTTTGATT
Found at i:13497655 original size:38 final size:38
Alignment explanation
Indices: 13497583--13497683 Score: 123
Period size: 38 Copynumber: 2.7 Consensus size: 38
13497573 GGTCAACGCT
* * **
13497583 GGTCCGGACGGTCTGACCGGTTCAGCGGTTGGATCGGC
1 GGTCCGGACGATCTGACCGGTTCAGCGGTCGGATCAAC
* *
13497621 GGTTCGGGCGATCTGACCGGTTC-GACGGTCGGATCAAC
1 GGTCCGGACGATCTGACCGGTTCAG-CGGTCGGATCAAC
*
13497659 GGTCCGGACGATCTGACTGGTTCAG
1 GGTCCGGACGATCTGACCGGTTCAG
13497684 TCCGTCCACT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
37 1 0.02
38 50 0.96
39 1 0.02
ACGTcount: A:0.14, C:0.26, G:0.39, T:0.22
Consensus pattern (38 bp):
GGTCCGGACGATCTGACCGGTTCAGCGGTCGGATCAAC
Found at i:13498548 original size:9 final size:9
Alignment explanation
Indices: 13498534--13498576 Score: 77
Period size: 9 Copynumber: 4.7 Consensus size: 9
13498524 TAATTCTCGT
13498534 TTTTTTTTG
1 TTTTTTTTG
13498543 TTTTTTTTG
1 TTTTTTTTG
13498552 TTTTTTCTTG
1 TTTTTT-TTG
13498562 TTTTTTTTG
1 TTTTTTTTG
13498571 TTTTTT
1 TTTTTT
13498577 GTTTATATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
9 24 0.73
10 9 0.27
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.88
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:13498556 original size:19 final size:19
Alignment explanation
Indices: 13498532--13498576 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
13498522 TCTAATTCTC
*
13498532 GTTTTTTTTTGTTTTTTTT
1 GTTTTTTCTTGTTTTTTTT
13498551 GTTTTTTCTTGTTTTTTTT
1 GTTTTTTCTTGTTTTTTTT
13498570 GTTTTTT
1 GTTTTTT
13498577 GTTTATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.87
Consensus pattern (19 bp):
GTTTTTTCTTGTTTTTTTT
Found at i:13507905 original size:17 final size:16
Alignment explanation
Indices: 13507883--13507914 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
13507873 TGTTATATAC
13507883 TATATATAACATATAAT
1 TATATATAA-ATATAAT
13507900 TATATATAAATATAA
1 TATATATAAATATAA
13507915 AAATTATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
TATATATAAATATAAT
Found at i:13509023 original size:17 final size:17
Alignment explanation
Indices: 13509001--13509033 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
13508991 TTCACCAAGA
13509001 GATTAAGCCATTCATGT
1 GATTAAGCCATTCATGT
13509018 GATTAAGCCATTCATG
1 GATTAAGCCATTCATG
13509034 ACCCTTGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (17 bp):
GATTAAGCCATTCATGT
Found at i:13512743 original size:41 final size:41
Alignment explanation
Indices: 13512686--13512765 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
13512676 TCCTTCCCAA
13512686 AGTCACTTAGATTCAGCCTTGTTAAAGAACTCAAACCTGTC
1 AGTCACTTAGATTCAGCCTTGTTAAAGAACTCAAACCTGTC
13512727 AGTCACTTAGATTCAGCCTTGTTAAAGAACTCAAACCTG
1 AGTCACTTAGATTCAGCCTTGTTAAAGAACTCAAACCTG
13512766 ACAAAGGAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (41 bp):
AGTCACTTAGATTCAGCCTTGTTAAAGAACTCAAACCTGTC
Found at i:13527237 original size:11 final size:11
Alignment explanation
Indices: 13527221--13527250 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
13527211 CTCAAAATTT
13527221 ATTAGTATTAG
1 ATTAGTATTAG
13527232 ATTAGTATTAG
1 ATTAGTATTAG
13527243 ATTAGTAT
1 ATTAGTAT
13527251 GATTTATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:13527526 original size:43 final size:43
Alignment explanation
Indices: 13527465--13527551 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
13527455 AGACGAGTGA
*
13527465 TATATGAACTTGTCTTAAAGTCAAAATTGAACTGTTGTAATCT
1 TATATGAACTTGTCTTAAAGTCAAAATTGAACTGTTGGAATCT
13527508 TATATGAACTTGTCTTAAAGTCAAAATTGAACTGTTGGAATCT
1 TATATGAACTTGTCTTAAAGTCAAAATTGAACTGTTGGAATCT
13527551 T
1 T
13527552 CTTTTTTTCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.39
Consensus pattern (43 bp):
TATATGAACTTGTCTTAAAGTCAAAATTGAACTGTTGGAATCT
Found at i:13531093 original size:62 final size:64
Alignment explanation
Indices: 13531023--13531148 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
13531013 TTTATTATAT
13531023 TTATAATTTTTTAAAAAGAAATC-AAAA-ATATTTTTTAAAAAGATTTTTTCTTTTTTATGAAG
1 TTATAATTTTTTAAAAAGAAATCAAAAATATATTTTTTAAAAAGATTTTTTCTTTTTTATGAAG
13531085 TTATAATTTTTTAAAAAGAAATCAAAAATATATTTTTTAAAAAGATTTTTTCTTTTTTATGAAG
1 TTATAATTTTTTAAAAAGAAATCAAAAATATATTTTTTAAAAAGATTTTTTCTTTTTTATGAAG
13531149 CCCATTTATA
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
62 23 0.37
63 4 0.06
64 35 0.56
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (64 bp):
TTATAATTTTTTAAAAAGAAATCAAAAATATATTTTTTAAAAAGATTTTTTCTTTTTTATGAAG
Found at i:13532493 original size:15 final size:15
Alignment explanation
Indices: 13532473--13532524 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
13532463 TTCATTTCAG
*
13532473 TTTAATATTAATAAT
1 TTTAATAATAATAAT
13532488 TTTAATAATAATAAT
1 TTTAATAATAATAAT
**
13532503 AATAATAATAAATATAT
1 TTTAATAAT-AATA-AT
13532520 TTTAA
1 TTTAA
13532525 AAAATATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 21 0.70
16 4 0.13
17 5 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
TTTAATAATAATAAT
Found at i:13532496 original size:3 final size:3
Alignment explanation
Indices: 13532475--13532513 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
13532465 CATTTCAGTT
* **
13532475 TAA TAT TAA TAA TTT TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13532514 ATATATTTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:13532616 original size:12 final size:11
Alignment explanation
Indices: 13532587--13532623 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
13532577 CGACGCTGCT
13532587 GCCCCTGTCCA
1 GCCCCTGTCCA
*
13532598 GCCCCTGACCA
1 GCCCCTGTCCA
13532609 GTCCCCTGTCCA
1 G-CCCCTGTCCA
13532621 GCC
1 GCC
13532624 ACCCTACCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.11, C:0.54, G:0.19, T:0.16
Consensus pattern (11 bp):
GCCCCTGTCCA
Found at i:13540158 original size:12 final size:12
Alignment explanation
Indices: 13540141--13540165 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13540131 ATTTGAATCT
13540141 GGAATACGAAAC
1 GGAATACGAAAC
13540153 GGAATACGAAAC
1 GGAATACGAAAC
13540165 G
1 G
13540166 AGTCGTATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.28, T:0.08
Consensus pattern (12 bp):
GGAATACGAAAC
Found at i:13541723 original size:2 final size:2
Alignment explanation
Indices: 13541716--13541742 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13541706 TGTCATTGAA
13541716 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
13541743 CATTATAACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13544307 original size:13 final size:12
Alignment explanation
Indices: 13544293--13544327 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
13544283 TTCTTAATTA
13544293 AAAAAATTAAAT
1 AAAAAATTAAAT
* *
13544305 AAAAAGTAAAAT
1 AAAAAATTAAAT
13544317 AAAAAATTAAA
1 AAAAAATTAAA
13544328 ACTGATAGAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (12 bp):
AAAAAATTAAAT
Found at i:13545426 original size:17 final size:17
Alignment explanation
Indices: 13545397--13545429 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13545387 TAAAAAAAAA
13545397 ATTTTGTAATATTTTTT
1 ATTTTGTAATATTTTTT
13545414 ATTTT-TAATTATTTTT
1 ATTTTGTAA-TATTTTT
13545430 AACATAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (17 bp):
ATTTTGTAATATTTTTT
Found at i:13547072 original size:31 final size:32
Alignment explanation
Indices: 13547034--13547115 Score: 105
Period size: 31 Copynumber: 2.6 Consensus size: 32
13547024 TTTTTCGACC
13547034 AACAAGTGGTATCAAAGCTGTAG-TGA-TCCCT
1 AACAAGTGGTATCAAAGCTGT-GTTGATTCCCT
* * *
13547065 AACAAGTGGTATCAGAGTTGTGTTGATTTCCT
1 AACAAGTGGTATCAAAGCTGTGTTGATTCCCT
*
13547097 TACAAGTGGTATCAAAGCT
1 AACAAGTGGTATCAAAGCT
13547116 AAAAGCTCTA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
30 1 0.02
31 22 0.51
32 20 0.47
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (32 bp):
AACAAGTGGTATCAAAGCTGTGTTGATTCCCT
Found at i:13550492 original size:3 final size:3
Alignment explanation
Indices: 13550486--13550516 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
13550476 TCGTCGTTGC
13550486 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
13550517 TTCTTCTCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:13551800 original size:21 final size:21
Alignment explanation
Indices: 13551770--13551863 Score: 75
Period size: 21 Copynumber: 4.4 Consensus size: 21
13551760 ATAAATAATC
*
13551770 TTTATATAATTATTTATAATTA
1 TTTAT-TAATAATTTATAATTA
*
13551792 TTTATTAATAATATTTATCA-TA
1 TTTATTAAT-A-ATTTATAATTA
* *
13551814 TTTATTAA-AATATAAATATTA
1 TTTATTAATAATTTATA-ATTA
* *
13551835 TTTATTAATAAATAATAATTA
1 TTTATTAATAATTTATAATTA
*
13551856 TTCATTAA
1 TTTATTAA
13551864 AATGTAAATC
Statistics
Matches: 57, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
19 4 0.07
20 2 0.04
21 25 0.44
22 19 0.33
23 7 0.12
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTATTAATAATTTATAATTA
Found at i:13551878 original size:42 final size:42
Alignment explanation
Indices: 13551788--13551901 Score: 115
Period size: 43 Copynumber: 2.6 Consensus size: 42
13551778 ATTATTTATA
* * *
13551788 ATTATTTATTAATAATATTTATCATATTTATTAAAATATAAAT
1 ATTATTTATTAATAATAATAAT-ATATTCATTAAAATATAAAT
*
13551831 ATTATTTATTAATAAATAATAAT-TATTCATTAAAATGTAAATCTT
1 ATTATTTATTAAT-AATAATAATATATTCATTAAAATATAAA---T
* *
13551876 ATTATTTATT-ATAATTATTATATATT
1 ATTATTTATTAATAATAATAATATATT
13551902 ATATTTACTA
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
42 16 0.27
43 20 0.33
44 13 0.22
45 11 0.18
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.52
Consensus pattern (42 bp):
ATTATTTATTAATAATAATAATATATTCATTAAAATATAAAT
Found at i:13551895 original size:16 final size:16
Alignment explanation
Indices: 13551874--13551904 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13551864 AATGTAAATC
*
13551874 TTATTATTTATTATAA
1 TTATTATATATTATAA
13551890 TTATTATATATTATA
1 TTATTATATATTATA
13551905 TTTACTATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATTATATATTATAA
Found at i:13564780 original size:16 final size:16
Alignment explanation
Indices: 13564755--13564786 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13564745 ACCGTAGCTA
13564755 ATGATAATGATGATTT
1 ATGATAATGATGATTT
*
13564771 ATGATGATGATGATTT
1 ATGATAATGATGATTT
13564787 TAAACATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (16 bp):
ATGATAATGATGATTT
Found at i:13568992 original size:16 final size:16
Alignment explanation
Indices: 13568973--13569003 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
13568963 AATGATAATA
13568973 ATGATTTATGATGATG
1 ATGATTTATGATGATG
13568989 ATGATTTATGATGAT
1 ATGATTTATGATGAT
13569004 TTTAAACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.23, T:0.45
Consensus pattern (16 bp):
ATGATTTATGATGATG
Found at i:13572506 original size:30 final size:31
Alignment explanation
Indices: 13572467--13572527 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
13572457 TAAAGAAAAA
*
13572467 TACATAATAT-AAAAAAATACAAA-TACAAAC
1 TACAAAATATAAAAAAAATA-AAAGTACAAAC
13572497 TACAAAATATCAAAAAAAATAAAAGTACAAA
1 TACAAAATAT-AAAAAAAATAAAAGTACAAA
13572528 AAAAAGGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 9 0.33
31 3 0.11
32 15 0.56
ACGTcount: A:0.69, C:0.11, G:0.02, T:0.18
Consensus pattern (31 bp):
TACAAAATATAAAAAAAATAAAAGTACAAAC
Found at i:13573193 original size:16 final size:17
Alignment explanation
Indices: 13573172--13573205 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
13573162 GAGAGTATAG
13573172 AGAGAAAATGAG-GAAA
1 AGAGAAAATGAGAGAAA
13573188 AGAGAAAATGAGAGAAA
1 AGAGAAAATGAGAGAAA
13573205 A
1 A
13573206 AAAATTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.29, T:0.06
Consensus pattern (17 bp):
AGAGAAAATGAGAGAAA
Found at i:13573472 original size:18 final size:17
Alignment explanation
Indices: 13573440--13573473 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13573430 AAGTAAAAAA
*
13573440 AAATTTTTTTCTTTTTC
1 AAATTTTTTTATTTTTC
13573457 AAATTTTTTTAATTTTT
1 AAATTTTTTT-ATTTTT
13573474 TTATATATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (17 bp):
AAATTTTTTTATTTTTC
Found at i:13574030 original size:21 final size:20
Alignment explanation
Indices: 13574001--13574051 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
13573991 TTTAAATTAA
*
13574001 AAATAAAAATTAATAAAACAAT
1 AAAT-AAAATTAATAAAA-AAG
**
13574023 AAATAAAATTTCTAAAAAAG
1 AAATAAAATTAATAAAAAAG
13574043 AAATAAAAT
1 AAATAAAAT
13574052 GTGTGCATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 11 0.42
21 11 0.42
22 4 0.15
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.24
Consensus pattern (20 bp):
AAATAAAATTAATAAAAAAG
Found at i:13575818 original size:20 final size:20
Alignment explanation
Indices: 13575795--13575836 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
13575785 AGAATGTTAG
13575795 AATTGGAAGGGGAATGCCAA
1 AATTGGAAGGGGAATGCCAA
13575815 AATTGGAAGGGGAATGCCAA
1 AATTGGAAGGGGAATGCCAA
13575835 AA
1 AA
13575837 AAAAAAGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.10, G:0.33, T:0.14
Consensus pattern (20 bp):
AATTGGAAGGGGAATGCCAA
Found at i:13575844 original size:20 final size:20
Alignment explanation
Indices: 13575801--13575844 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
13575791 TTAGAATTGG
****
13575801 AAGGGGAATGCCAAAATTGG
1 AAGGGGAATGCCAAAAAAAA
13575821 AAGGGGAATGCCAAAAAAAA
1 AAGGGGAATGCCAAAAAAAA
13575841 AAGG
1 AAGG
13575845 AAAGATTGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.09, G:0.32, T:0.09
Consensus pattern (20 bp):
AAGGGGAATGCCAAAAAAAA
Found at i:13578633 original size:19 final size:20
Alignment explanation
Indices: 13578591--13578628 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
13578581 AAAGAAAGCC
13578591 AAGA-AAGAAAAAAAAAGTT
1 AAGAGAAGAAAAAAAAAGTT
13578610 AAGAGAAGAAAAAAAAAGT
1 AAGAGAAGAAAAAAAAAGT
13578629 CAGAGTAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (20 bp):
AAGAGAAGAAAAAAAAAGTT
Found at i:13584532 original size:48 final size:48
Alignment explanation
Indices: 13584455--13585086 Score: 336
Period size: 48 Copynumber: 12.9 Consensus size: 48
13584445 ACATATGAAG
* * *
13584455 ATTTTTAAAATTATTGAGCCTCT-CTTGAAATGAGTTTTTTTCAAATAA
1 ATTTTTAAAGTTGTTGAGCCTCTAC-TGAAATGAGCTTTTTTCAAATAA
* * * * **
13584503 AATTTTAAAGTTGTTAAGCCTTTACTGAAA-GAAACCATTTTCAAGATGAGA
1 ATTTTTAAAGTTGTTGAGCCTCTACTGAAATG-AGCTTTTTTCAA-AT-A-A
* * * * * * *
13584554 ATTTTTAAAGTTGTTAAGCCTCTACTGAGAGGATCCTCTCTCAATATGAGA
1 ATTTTTAAAGTTGTTGAGCCTCTACTGAAATGAGCTTTTTTCAA-AT-A-A
* * * * * *
13584605 ATTTTTAAAGTTATCGAGCTTTTATTGAGATGAGCCTTTTTT-AAGATGAA
1 ATTTTTAAAGTTGTTGAGCCTCTACTGAAATGAG-CTTTTTTCAA-AT-AA
* * * * *
13584655 ATTTTTAAAGTTGTTGAGCCTTTGCT-AAGATGAGCCCTTTTCCAAGATGAG
1 ATTTTTAAAGTTGTTGAGCCTCTACTGAA-ATGAG-CTTTTTTCAA-AT-AA
* * * * *
13584706 ATTTTTAAAGTTATCGAGCCTCTGCTGAAAGGAGC-TTTTTCAGATGAGA
1 ATTTTTAAAGTTGTTGAGCCTCTACTGAAATGAGCTTTTTTCAAAT-A-A
* * * *
13584755 TTTTTTAAAATTGTTGAGCCTCTACTGAGA-GAAGCTTTTTTCATATAA
1 ATTTTTAAAGTTGTTGAGCCTCTACTGAAATG-AGCTTTTTTCAAATAA
* ** * *
13584803 GATTTTTAAAGTTGTTGAGCCTATGGTGAGATGAGCTTTTTTCATATAA
1 -ATTTTTAAAGTTGTTGAGCCTCTACTGAAATGAGCTTTTTTCAAATAA
* * * * * *
13584852 GACTTTTAAAGTTGTTAAGCCTCT-GTTAAGATAAGCTTTTTT-AGATAA
1 -ATTTTTAAAGTTGTTGAGCCTCTACTGAA-ATGAGCTTTTTTCAAATAA
* * * *
13584900 GATCTTTAAAGTTGTCGAGCCTCTACTGAGA-GAAGCTTTTTT-AGATAA
1 -ATTTTTAAAGTTGTTGAGCCTCTACTGAAATG-AGCTTTTTTCAAATAA
* * * * *
13584948 GATCTTTAAAATTATTGAGCCTCTACTGAGATGAGC-TTTTTCAGATAA
1 -ATTTTTAAAGTTGTTGAGCCTCTACTGAAATGAGCTTTTTTCAAATAA
* * * * * **
13584996 GATTTTTAAAGTTATTAAGCCTATGCTGAAATAAG-AATTTTCAAGATAA
1 -ATTTTTAAAGTTGTTGAGCCTCTACTGAAATGAGCTTTTTTCAA-ATAA
* *
13585045 AATTTTAAAGTTGTTGAGCCTCTGCT-AAGATGAGCCTTTTTT
1 ATTTTTAAAGTTGTTGAGCCTCTACTGAA-ATGAG-CTTTTTT
13585087 AGATTTTAAA
Statistics
Matches: 468, Mismatches: 91, Indels: 48
0.77 0.15 0.08
Matches are distributed among these distances:
47 8 0.02
48 178 0.38
49 118 0.25
50 49 0.10
51 108 0.23
52 7 0.01
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (48 bp):
ATTTTTAAAGTTGTTGAGCCTCTACTGAAATGAGCTTTTTTCAAATAA
Found at i:13584774 original size:49 final size:48
Alignment explanation
Indices: 13584642--13585070 Score: 362
Period size: 48 Copynumber: 8.8 Consensus size: 48
13584632 AGATGAGCCT
* * *
13584642 TTTTTAAGATGAA-ATTTTTAAAGTTGTTGAGCCTTTGCT-AAGATGAGCCC
1 TTTTTCAGAT-AAGATTTTTAAAGTTGTTGAGCCTCTGCTGAA-ATAAG--C
* * * * **
13584692 TTTTCCAAGATGAGATTTTTAAAGTTATCGAGCCTCTGCTGAAAGGAGC
1 TTTTTC-AGATAAGATTTTTAAAGTTGTTGAGCCTCTGCTGAAATAAGC
* * * * *
13584741 TTTTTCAGATGAGATTTTTTAAAATTGTTGAGCCTCTACTGAGAGAAGC
1 TTTTTCAGATAAGA-TTTTTAAAGTTGTTGAGCCTCTGCTGAAATAAGC
* * * * *
13584790 TTTTTTCATATAAGATTTTTAAAGTTGTTGAGCCTATGGTGAGATGAGC
1 -TTTTTCAGATAAGATTTTTAAAGTTGTTGAGCCTCTGCTGAAATAAGC
* * * *
13584839 TTTTTTCATATAAGACTTTTAAAGTTGTTAAGCCTCTG-TTAAGATAAGC
1 -TTTTTCAGATAAGATTTTTAAAGTTGTTGAGCCTCTGCTGAA-ATAAGC
* * * * * *
13584888 TTTTTTAGATAAGATCTTTAAAGTTGTCGAGCCTCTACTGAGAGAAGC
1 TTTTTCAGATAAGATTTTTAAAGTTGTTGAGCCTCTGCTGAAATAAGC
* * * * * * *
13584936 TTTTTTAGATAAGATCTTTAAAATTATTGAGCCTCTACTGAGATGAGC
1 TTTTTCAGATAAGATTTTTAAAGTTGTTGAGCCTCTGCTGAAATAAGC
* * * *
13584984 TTTTTCAGATAAGATTTTTAAAGTTATTAAGCCTATGCTGAAATAAGA
1 TTTTTCAGATAAGATTTTTAAAGTTGTTGAGCCTCTGCTGAAATAAGC
* *
13585032 ATTTTCAAGATAA-AATTTTAAAGTTGTTGAGCCTCTGCT
1 TTTTTC-AGATAAGATTTTTAAAGTTGTTGAGCCTCTGCT
13585071 AAGATGAGCC
Statistics
Matches: 314, Mismatches: 57, Indels: 18
0.81 0.15 0.05
Matches are distributed among these distances:
48 154 0.49
49 110 0.35
50 17 0.05
51 31 0.10
52 2 0.01
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (48 bp):
TTTTTCAGATAAGATTTTTAAAGTTGTTGAGCCTCTGCTGAAATAAGC
Found at i:13595592 original size:51 final size:51
Alignment explanation
Indices: 13595536--13596009 Score: 287
Period size: 51 Copynumber: 9.5 Consensus size: 51
13595526 TCAAATAAAA
* * *
13595536 TTTTAAAGTTGTTGAGCCTCTACTAAAAGAAACCGTTTCCAAGATGAGAAT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAGAAACCTTTTCCAAGATGAGAAT
* * * * * *
13595587 TTTTAAAATTGTTAAGCCTCTGCTGAGAGGATCC-TCTCTCAAGATGAGAAT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAGAAACCTTTTC-CAAGATGAGAAT
* * * * **
13595638 TTTTAAAGTTGTCGAGCCTTTACTGAGATAAGCCTTTTTTAAGATGA-AAT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAGAAACCTTTTCCAAGATGAGAAT
* * * * ** *
13595688 TTTTAAAGTTGTTGAGCCTTTGCTAAGATTAGCCCTTTTTCAAGATGAG-AT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGA-GAAACCTTTTCCAAGATGAGAAT
* * * * * *
13595739 TTTTAAAGTTGTCGAGCCTCTGCTGAGAG-GAGCTTTTTC-AGATGAGATT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAGAAACCTTTTCCAAGATGAGAAT
* * * *
13595788 TTTTAAAGTTGTTGAGCCTCTACTGAGAGAAGCTTTTTCC-ATATAAG-AT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAGAAACCTTTTCCAAGATGAGAAT
* * ** * * * * * * *
13595837 TTTTAAAATTGTTGAGCCTATGGTGAGAGGAGCTTTTTTC-ATATAAG-AC
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAGAAACCTTTTCCAAGATGAGAAT
* * * * ** *
13595886 TTTTAAAGTTGTTAAGCCTTTGCTGAGATG--AGCTTTT-TTAGATAAG-AT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGA-GAAACCTTTTCCAAGATGAGAAT
* * * * *
13595934 CTTTAAAGTTGTCGAGCCTCTACTGAGAG-AAGCTTTTTC-AGATAAG-AT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAGAAACCTTTTCCAAGATGAGAAT
* * *
13595982 CTTTAAAATTTTTGAGCCTCTACTGAGA
1 TTTTAAAGTTGTTGAGCCTCTACTGAGA
13596010 TAAGCTTTTT
Statistics
Matches: 345, Mismatches: 68, Indels: 23
0.79 0.16 0.05
Matches are distributed among these distances:
47 1 0.00
48 82 0.24
49 103 0.30
50 42 0.12
51 115 0.33
52 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (51 bp):
TTTTAAAGTTGTTGAGCCTCTACTGAGAGAAACCTTTTCCAAGATGAGAAT
Found at i:13595794 original size:49 final size:48
Alignment explanation
Indices: 13595483--13596101 Score: 467
Period size: 48 Copynumber: 12.6 Consensus size: 48
13595473 AGAACATATG
* * * * *
13595483 AAGATTTTTAAAATTATTGAACCTCTCCTGAGATG-AGCTTTTTTCAAAT
1 AAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGA-GAAGC-TTTTTCAGAT
* * * * * * *
13595532 AA-AATTTTAAAGTTGTTGAGCCTCTACTAAAAGAAACCGTTTCCAAGAT
1 AAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAG-AAGCTTTTTC-AGAT
* * * ** * *
13595581 GAGAATTTTTAAAATTGTTAAGCCTCTGCTGAGAGGATCCTCTCTCAAGAT
1 AAG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGA-GAAGCTTTTTC-AGAT
* * * * * *
13595632 GAGAATTTTTAAAGTTGTCGAGCCTTTACTGAGATAAGCCTTTTTTAAGAT
1 AAG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAG-C-TTTTTCAGAT
* * **
13595683 GAA-ATTTTTAAAGTTGTTGAGCCTTTGCTAAGATTAGCCCTTTTTCAAGAT
1 -AAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAG--CTTTTTC-AGAT
* * *
13595734 GAGATTTTTAAAGTTGTCGAGCCTCTGCTGAGAGGAGCTTTTTCAGAT
1 AAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCTTTTTCAGAT
* * *
13595782 GAGATTTTTTAAAGTTGTTGAGCCTCTACTGAGAGAAGCTTTTTCCATAT
1 AAGA-TTTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCTTTTT-CAGAT
* * * * *
13595832 AAGATTTTTAAAATTGTTGAGCCTATGGTGAGAGGAGCTTTTTTCATAT
1 AAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGC-TTTTTCAGAT
* * * *
13595881 AAGACTTTTAAAGTTGTTAAGCCTTTGCTGAGATG-AGCTTTTTTAGAT
1 AAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGA-GAAGCTTTTTCAGAT
* * *
13595929 AAGATCTTTAAAGTTGTCGAGCCTCTACTGAGAGAAGCTTTTTCAGAT
1 AAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCTTTTTCAGAT
* * * * * *
13595977 AAGATCTTTAAAATTTTTGAGCCTCTACTGAGATAAGCTTTTTTAGAT
1 AAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCTTTTTCAGAT
* * * * **
13596025 AAGATTTTTAAAGTTATT-AGGCCTATGCTGAAATAAGAATTTTCAAGAT
1 AAGATTTTTAAAGTTGTTGA-GCCTCTGCTGAGAGAAGCTTTTTC-AGAT
* *
13596074 AA-AATTTTAAAGTTGTTAAGCCTCTGCT
1 AAGATTTTTAAAGTTGTTGAGCCTCTGCT
13596102 AATATGAGCC
Statistics
Matches: 463, Mismatches: 87, Indels: 41
0.78 0.15 0.07
Matches are distributed among these distances:
47 3 0.01
48 179 0.39
49 123 0.27
50 50 0.11
51 103 0.22
52 5 0.01
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (48 bp):
AAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCTTTTTCAGAT
Found at i:13595864 original size:98 final size:96
Alignment explanation
Indices: 13595483--13596039 Score: 429
Period size: 98 Copynumber: 5.7 Consensus size: 96
13595473 AGAACATATG
* * * * * *
13595483 AAGATTTTTAAAATTATTGAACCTCTCCTGAGATG-AGCTTTTTTCAAATAA-AATTTTAAAGTT
1 AAGATTTTTAAAGTTGTTGAGCCTCTACTGAGA-GAAGCTTTTTT-AGATAAGATTTTTAAAGTT
* * * * * * * *
13595546 GTTGAGCCTCTACTAAAAGAAACCGTTTCCAAGAT
64 GTCGAGCCTCTGCTGAGAG-GAGCTTTTTC-AGAT
* * * * ** * ** *
13595581 GAGAATTTTTAAAATTGTTAAGCCTCTGCTGAGAGGATCCTCTCTCAAGATGAGAATTTTTAAAG
1 AAG-ATTTTTAAAGTTGTTGAGCCTCTACTGAGA-GAAGCT-TTTTTAGATAAG-ATTTTTAAAG
* * ** *
13595646 TTGTCGAGCCTTTACTGAGATAAGCCTTTTTTAAGAT
62 TTGTCGAGCCTCTGCTGAGAGGAG-C-TTTTTCAGAT
* * * ** * *
13595683 GAA-ATTTTTAAAGTTGTTGAGCCTTTGCTAAGATTAGCCCTTTTTCAAGATGAGATTTTTAAAG
1 -AAGATTTTTAAAGTTGTTGAGCCTCTACTGAGAGAAG--CTTTTT-TAGATAAGATTTTTAAAG
13595747 TTGTCGAGCCTCTGCTGAGAGGAGCTTTTTCAGAT
62 TTGTCGAGCCTCTGCTGAGAGGAGCTTTTTCAGAT
* * * *
13595782 GAGATTTTTTAAAGTTGTTGAGCCTCTACTGAGAGAAGCTTTTTCCATATAAGATTTTTAAAATT
1 AAGA-TTTTTAAAGTTGTTGAGCCTCTACTGAGAGAAGCTTTTT-TAGATAAGATTTTTAAAGTT
* * * *
13595847 GTTGAGCCTATGGTGAGAGGAGCTTTTTTCATAT
64 GTCGAGCCTCTGCTGAGAGGAGC-TTTTTCAGAT
* * * * *
13595881 AAGACTTTTAAAGTTGTTAAGCCTTTGCTGAGATG-AGCTTTTTTAGATAAGATCTTTAAAGTTG
1 AAGATTTTTAAAGTTGTTGAGCCTCTACTGAGA-GAAGCTTTTTTAGATAAGATTTTTAAAGTTG
* *
13595945 TCGAGCCTCTACTGAGAGAAGCTTTTTCAGAT
65 TCGAGCCTCTGCTGAGAGGAGCTTTTTCAGAT
* * * *
13595977 AAGATCTTTAAAATTTTTGAGCCTCTACTGAGATAAGCTTTTTTAGATAAGATTTTTAAAGTT
1 AAGATTTTTAAAGTTGTTGAGCCTCTACTGAGAGAAGCTTTTTTAGATAAGATTTTTAAAGTT
13596040 ATTAGGCCTA
Statistics
Matches: 366, Mismatches: 77, Indels: 34
0.77 0.16 0.07
Matches are distributed among these distances:
96 62 0.17
97 34 0.09
98 79 0.22
99 50 0.14
100 35 0.10
101 62 0.17
102 40 0.11
103 4 0.01
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (96 bp):
AAGATTTTTAAAGTTGTTGAGCCTCTACTGAGAGAAGCTTTTTTAGATAAGATTTTTAAAGTTGT
CGAGCCTCTGCTGAGAGGAGCTTTTTCAGAT
Found at i:13596203 original size:5 final size:5
Alignment explanation
Indices: 13596193--13596220 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
13596183 AACTTTTTCA
13596193 AAAAG AAAAG AAAAG AAAAG AAAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAA
13596221 TATTCCTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:13596541 original size:17 final size:18
Alignment explanation
Indices: 13596519--13596557 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
13596509 TAAATTAAAC
*
13596519 AAAAATA-CATAATACAA
1 AAAAATACCAAAATACAA
13596536 AAAAATACCAAAATACAA
1 AAAAATACCAAAATACAA
13596554 AAAA
1 AAAA
13596558 TGGGGGATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.74, C:0.13, G:0.00, T:0.13
Consensus pattern (18 bp):
AAAAATACCAAAATACAA
Found at i:13596828 original size:10 final size:10
Alignment explanation
Indices: 13596813--13596837 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
13596803 GAAGGAGGAT
13596813 AAAAAAGAAA
1 AAAAAAGAAA
13596823 AAAAAAGAAA
1 AAAAAAGAAA
13596833 AAAAA
1 AAAAA
13596838 TATTCCTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:13597259 original size:14 final size:14
Alignment explanation
Indices: 13597240--13597269 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
13597230 GACAACACTG
13597240 CCACCATGCCCTAT
1 CCACCATGCCCTAT
*
13597254 CCACCATTCCCTAT
1 CCACCATGCCCTAT
13597268 CC
1 CC
13597270 CTCTCTCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.53, G:0.03, T:0.23
Consensus pattern (14 bp):
CCACCATGCCCTAT
Found at i:13598183 original size:23 final size:22
Alignment explanation
Indices: 13598140--13598185 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
13598130 ATTTTTCAAA
* *
13598140 ATTTTTTAATTTTTTATATATT
1 ATTTTTTAATATTTTACATATT
*
13598162 ATTTTATTAATATTTTGCATATT
1 ATTTT-TTAATATTTTACATATT
13598185 A
1 A
13598186 AAACATTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (22 bp):
ATTTTTTAATATTTTACATATT
Found at i:13598302 original size:18 final size:17
Alignment explanation
Indices: 13598269--13598321 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
13598259 TAAACTTAAA
13598269 AAAACAAAA-TAA-AAT
1 AAAACAAAATTAATAAT
13598284 AAAA-ATAAATTTAATAAT
1 AAAACA-AAA-TTAATAAT
13598302 AAAACAAAATTAATAA-
1 AAAACAAAATTAATAAT
13598318 AAAA
1 AAAA
13598322 TGAGAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
14 1 0.03
15 7 0.21
16 4 0.12
17 10 0.30
18 10 0.30
19 1 0.03
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAACAAAATTAATAAT
Found at i:13598305 original size:17 final size:16
Alignment explanation
Indices: 13598255--13598322 Score: 52
Period size: 17 Copynumber: 4.3 Consensus size: 16
13598245 GTTAATTTTT
*
13598255 AAAATAAACTT-A-AA
1 AAAATAAAATTAATAA
* *
13598269 AAAACAAAA-TAAAATA
1 AAAATAAAATTAATA-A
*
13598285 AAAATAAATTTAATAA
1 AAAATAAAATTAATAA
*
13598301 TAAAACAAAATTAATAA
1 -AAAATAAAATTAATAA
13598318 AAAAT
1 AAAAT
13598323 GAGAAAAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
13 1 0.02
14 8 0.20
15 1 0.02
16 13 0.32
17 18 0.44
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAATAAAATTAATAA
Found at i:13611247 original size:22 final size:22
Alignment explanation
Indices: 13611199--13611252 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
13611189 CTTTTTAACT
* *
13611199 TTTTTTAAATAATTAATAAGTA
1 TTTTTTAAATAATTAAAAAATA
* *
13611221 TTTTTTAAATTATAAAAAATATA
1 TTTTTTAAATAATTAAAAA-ATA
13611244 TTTTTTAAA
1 TTTTTTAAA
13611253 GATTTTATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 16 0.59
23 11 0.41
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTTTTAAATAATTAAAAAATA
Found at i:13611342 original size:23 final size:24
Alignment explanation
Indices: 13611311--13611363 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
13611301 TACTTTTTTC
**
13611311 TTTTCTAAAAAATATTTAATA-ATA
1 TTTT-TAAAAAATATAAAATATATA
*
13611335 TTTTTAAAAATTATAAAATATATA
1 TTTTTAAAAAATATAAAATATATA
13611359 TTTTT
1 TTTTT
13611364 TAAGATTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TTTTTAAAAAATATAAAATATATA
Found at i:13611424 original size:115 final size:115
Alignment explanation
Indices: 13611205--13611423 Score: 279
Period size: 114 Copynumber: 1.9 Consensus size: 115
13611195 AACTTTTTTT
* *
13611205 AAATAATTAATAAGTATTTTTTAAATTATAAAAAATATATTTTTTAAAGATTTTATTTTTTGTGT
1 AAATAATTAATAAGTATTTTTAAAATTATAAAAAATATATTTTTTAAAGATTTTATTTTTTATGT
* *
13611270 GGAATCGAGTTATATCAATTTTTTATTTTTTTACTTTTTTCTTTTCTAAA
66 GGAATCCAGTTATATCAATTTTTTATTTCTTTACTTTTTTCTTTTCTAAA
* *
13611320 AAATATTTAATAA-TATTTTTAAAAATTATAAAATATATATTTTTT-AAGATTTTATTTTTTATA
1 AAATAATTAATAAGTATTTTT-AAAATTATAAAAAATATATTTTTTAAAGATTTTATTTTTTAT-
* *
13611383 CGT-GAGATCCATTTATA-C-ATTTTTT-TTTACTTTCCTTTTTT
64 -GTGGA-ATCCAGTTATATCAATTTTTTATTT-CTTTACTTTTTT
13611424 TTATCATTTT
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
113 3 0.03
114 40 0.44
115 37 0.41
116 11 0.12
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (115 bp):
AAATAATTAATAAGTATTTTTAAAATTATAAAAAATATATTTTTTAAAGATTTTATTTTTTATGT
GGAATCCAGTTATATCAATTTTTTATTTCTTTACTTTTTTCTTTTCTAAA
Found at i:13611685 original size:17 final size:17
Alignment explanation
Indices: 13611660--13611694 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
13611650 TAAATTTTCT
*
13611660 TTTATTTTTTTAAAAAA
1 TTTAATTTTTTAAAAAA
13611677 TTTAATTTTTTAAAAAA
1 TTTAATTTTTTAAAAAA
13611694 T
1 T
13611695 ATTGTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTAATTTTTTAAAAAA
Found at i:13612461 original size:86 final size:86
Alignment explanation
Indices: 13612316--13612482 Score: 271
Period size: 86 Copynumber: 1.9 Consensus size: 86
13612306 AACAATATGC
* *
13612316 ATTCAATATGTTTCAATCTATTTCAACTTGGCATGGGTGATTTTTTCAAATCATAATCAAGTTAA
1 ATTCAATATGTTTCAATCTATTTCAACTTGACATGGATGATTTTTTCAAATCATAATCAAGTTAA
*
13612381 AACAGATTAAATTTTTAATAT
66 AACAAATTAAATTTTTAATAT
* * *
13612402 ATTCAATATGTTTCAATCTATTTCAATTTGATATGGATGATTTTTTCAAATCATAATCAAGTTAG
1 ATTCAATATGTTTCAATCTATTTCAACTTGACATGGATGATTTTTTCAAATCATAATCAAGTTAA
*
13612467 AACAAATTGAATTTTT
66 AACAAATTAAATTTTT
13612483 TATAAGATAC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 74 1.00
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.43
Consensus pattern (86 bp):
ATTCAATATGTTTCAATCTATTTCAACTTGACATGGATGATTTTTTCAAATCATAATCAAGTTAA
AACAAATTAAATTTTTAATAT
Found at i:13615815 original size:15 final size:15
Alignment explanation
Indices: 13615758--13616164 Score: 144
Period size: 15 Copynumber: 27.5 Consensus size: 15
13615748 TAATTTTACT
*
13615758 TATAAATAATATTATA
1 TATAAATAA-ATAATA
13615774 TTAATAAA-AAATAATA
1 -T-ATAAATAAATAATA
* *
13615790 T-TATAT-TATAATA
1 TATAAATAAATAATA
13615803 TATAAATAAATAATA
1 TATAAATAAATAATA
* * *
13615818 TATTATTAATATATTA
1 TATAAATAA-ATAATA
13615834 TAT-AATAAATAATA
1 TATAAATAAATAATA
* *
13615848 T-TATAT-TATAATA
1 TATAAATAAATAATA
* *
13615861 TATTAACAAATATACTA
1 TATAAATAAATA-A-TA
* *
13615878 TATGAATAAGTAATA
1 TATAAATAAATAATA
*
13615893 TACTATAA-ATATAATA
1 TA-TA-AATAAATAATA
**
13615909 TATTCATAAATAATA
1 TATAAATAAATAATA
*
13615924 T-TACAATACAT--T-
1 TATA-AATAAATAATA
* *
13615936 CATAAAT-AATATTA
1 TATAAATAAATAATA
* *
13615950 TATTAATAAATATTA
1 TATAAATAAATAATA
* *
13615965 TTACAAATAAATATTA
1 -TATAAATAAATAATA
* *
13615981 TACT-AATATATTA-A
1 TA-TAAATAAATAATA
13615995 TATAAATAAATAATA
1 TATAAATAAATAATA
*
13616010 TAATAAATATTATTAAT-
1 T-ATAAATA--AATAATA
*
13616027 T-T-AATTAATAA-A
1 TATAAATAAATAATA
*
13616039 TAT-TAT-AATAATA
1 TATAAATAAATAATA
*
13616052 TATTAATAAATAATA
1 TATAAATAAATAATA
*
13616067 TATATAATAAATGATA
1 TATA-AATAAATAATA
*
13616083 TAGT-ATTAATATAATA
1 TA-TAAATAA-ATAATA
*
13616099 TATTAAT-AAT--TA
1 TATAAATAAATAATA
*
13616111 TATTAATAAATAATA
1 TATAAATAAATAATA
* *
13616126 TATTAATATATTAATA
1 TATAAATA-AATAATA
* *
13616142 AATAATATAAAGAATA
1 TATAA-ATAAATAATA
13616158 -ATAAATA
1 TATAAATA
13616165 GTTTTATTTT
Statistics
Matches: 295, Mismatches: 55, Indels: 83
0.68 0.13 0.19
Matches are distributed among these distances:
11 2 0.01
12 22 0.07
13 33 0.11
14 41 0.14
15 87 0.29
16 79 0.27
17 21 0.07
18 10 0.03
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (15 bp):
TATAAATAAATAATA
Found at i:13615911 original size:58 final size:58
Alignment explanation
Indices: 13615777--13616104 Score: 159
Period size: 58 Copynumber: 5.6 Consensus size: 58
13615767 TATTATATTA
* * * * *
13615777 ATAAAAAATAATATTATATTATAATATATAAATAAATAATATATTATTAATATATTAT
1 ATAATAAATAATATTATATTATAATATATTAACAAATAATATATTATGAATATAATAT
13615835 ATAATAAATAATATTATATTATAATATATTAACAAAT-ATACTA-TATGAATAAGTAATAT
1 ATAATAAATAATATTATATTATAATATATTAACAAATAATA-TATTATGAAT-A-TAATAT
* * *
13615894 ACT-ATAAAT-ATAATATATTCATAAATAATATT-AC-AATACAT-TCATAAAT-AATATTATAT
1 A-TAATAAATAATATTATATT-AT-AAT-ATATTAACAAATA-ATAT-AT-TATGAATATAATAT
* * * * * *
13615953 -TAATAAATATTATTACA-AATAA-ATATTATACTAAT-ATATTAATATAAATA-AATAAT
1 ATAATAAATAATATTATATTATAATATATTA-ACAAATAATA-TATTATGAATATAAT-AT
* * *
13616009 ATAATAAATATTATTA-ATTTAATTAATAAATATT-A-TAATAATATATTAATAAATA-ATATAT
1 ATAATAAATAATATTATA-TT-A-TAAT--ATATTAACAAATAATATATT-ATGAATATA-ATAT
* *
13616070 ATAATAAATGATATAGTATTAATATAATATATTAA
1 ATAATAAAT-A-ATATTA-TATTATAATATATTAA
13616105 TAATTATATT
Statistics
Matches: 213, Mismatches: 20, Indels: 71
0.70 0.07 0.23
Matches are distributed among these distances:
54 5 0.02
55 6 0.03
56 12 0.06
57 31 0.15
58 52 0.24
59 29 0.14
60 23 0.11
61 34 0.16
62 9 0.04
63 10 0.05
64 1 0.00
65 1 0.00
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (58 bp):
ATAATAAATAATATTATATTATAATATATTAACAAATAATATATTATGAATATAATAT
Found at i:13615967 original size:117 final size:119
Alignment explanation
Indices: 13615828--13616160 Score: 291
Period size: 117 Copynumber: 2.8 Consensus size: 119
13615818 TATTATTAAT
* * *
13615828 ATATTATATAATAAATAATATTATATTATAATATATTAACAAATATACT-ATATGAATAAGTAAT
1 ATATTATATAATAAATATTATTATA-TATAATATATTAACAAATATACTAATATAAATAAATAAT
* * * *
13615892 ATACTATAA-A-TA-TAATAT-ATTCATAAATAATATTACAATACATTCATAAATA
65 ATAATA-AATATTATTAATATAATTAATAAATAATATAACAATACATTAATAAATA
* * * *
13615944 ATATTATATTAATAAATATTATTACAAATAA-ATATTATACTAATATATTAATATAAATAAATAA
1 ATATTATA-TAATAAATATTATTATATATAATATATTA-ACAAATATACTAATATAAATAAATAA
* * * *
13616008 TATAATAAATATTATTAATTTAATTAATAAATATTATAATAATATATTAATAAATA
64 TATAATAAATATTATTAATATAATTAATAAATAATATAACAATACATTAATAAATA
* *
13616064 ATA-TATATAATAAATGATATAGTATTAATATAATATATTAA-TAAT-TA-T-AT-T-AATAAAT
1 ATATTATATAATAAAT-AT-TATTA-T-ATATAATATATTAACAAATATACTAATATAAATAAAT
* *
13616122 AATATATTAATATATTAATAA-ATAATATAA-AGAATAATA
62 AATATAATAA-ATATTATTAATATAAT-TAATA-AATAATA
13616161 AATAGTTTTA
Statistics
Matches: 180, Mismatches: 22, Indels: 29
0.78 0.10 0.13
Matches are distributed among these distances:
115 6 0.03
116 44 0.24
117 53 0.29
118 12 0.07
119 12 0.07
120 37 0.21
121 4 0.02
122 6 0.03
123 6 0.03
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (119 bp):
ATATTATATAATAAATATTATTATATATAATATATTAACAAATATACTAATATAAATAAATAATA
TAATAAATATTATTAATATAATTAATAAATAATATAACAATACATTAATAAATA
Found at i:13615975 original size:16 final size:15
Alignment explanation
Indices: 13615939--13616022 Score: 63
Period size: 16 Copynumber: 5.9 Consensus size: 15
13615929 ATACATTCAT
*
13615939 AAAT-AATATTATAT
1 AAATAAATATTATAC
*
13615953 TAATAAATATTATTAC
1 AAATAAATATTA-TAC
13615969 AAATAAATATTATAC
1 AAATAAATATTATAC
* *
13615984 TAAT--ATATTAATAT
1 AAATAAATATT-ATAC
13615998 AAATAAATA--ATA-
1 AAATAAATATTATAC
*
13616010 TAATAAATATTAT
1 AAATAAATATTAT
13616023 TAATTTAATT
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
12 8 0.14
13 8 0.14
14 11 0.20
15 13 0.23
16 16 0.29
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (15 bp):
AAATAAATATTATAC
Found at i:13616010 original size:63 final size:58
Alignment explanation
Indices: 13615996--13616145 Score: 112
Period size: 59 Copynumber: 2.5 Consensus size: 58
13615986 ATATATTAAT
*
13615996 ATAAATAAATAATATA-ATAAAT-ATTATTAATTTAATTAATAAATATTATAATAATATATTA
1 ATAAATAAATAATATATATAAATAAATATT-A-TTAA--AATAAATATTAT-ATAATATATTA
* * *
13616057 ATAAAT-AAT-ATATATAATAAATGATATAGTATTAATATAATATATTA-ATAATTATATTA
1 ATAAATAAATAATATAT-ATAAAT-AAATATTATTAAAATAA-ATATTATATAA-TATATTA
* *
13616116 ATAAATAATATATTAATATATTAATAAATA
1 ATAAATAA-ATAAT-ATATATAAATAAATA
13616146 ATATAAAGAA
Statistics
Matches: 72, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
58 4 0.06
59 22 0.31
60 10 0.14
61 22 0.31
62 7 0.10
63 7 0.10
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (58 bp):
ATAAATAAATAATATATATAAATAAATATTATTAAAATAAATATTATATAATATATTA
Found at i:13616056 original size:23 final size:23
Alignment explanation
Indices: 13615970--13616150 Score: 125
Period size: 23 Copynumber: 7.9 Consensus size: 23
13615960 TATTATTACA
*
13615970 AATAAATATTATACTAATATATT
1 AATAAATATTATAATAATATATT
13615993 AATATAA-A-TA-AAT-A-ATA-T
1 AATA-AATATTATAATAATATATT
*
13616011 AATAAATATTAT--TAATTTAATT
1 AATAAATATTATAATAATAT-ATT
13616033 AATAAATATTATAATAATATATT
1 AATAAATATTATAATAATATATT
* *
13616056 AATAAATAATATATATAATA-AAT
1 AATAAATATTATA-ATAATATATT
* *
13616079 GATATAGTATTA-ATATAATATATT
1 AATA-AATATTATA-ATAATATATT
13616103 AATAATTATATTAATAAATAATATATT
1 AATAA--ATATT-AT-AATAATATATT
13616130 AAT--ATATTAATAAATAATATA
1 AATAAATATT-AT-AATAATATA
13616151 AAGAATAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 36
0.73 0.06 0.20
Matches are distributed among these distances:
17 2 0.02
18 7 0.05
19 6 0.05
20 2 0.02
21 3 0.02
22 15 0.12
23 52 0.40
24 23 0.18
25 4 0.03
26 1 0.01
27 13 0.10
28 1 0.01
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (23 bp):
AATAAATATTATAATAATATATT
Found at i:13616058 original size:102 final size:105
Alignment explanation
Indices: 13615937--13616151 Score: 257
Period size: 102 Copynumber: 2.1 Consensus size: 105
13615927 CAATACATTC
* * *
13615937 ATAA-ATAATATTATATTAATAAATATTAT-TACAAATAAAT-AT-TA-TACTAATATATTAATA
1 ATAATATAATAATATATTAATAAATAATATATA-AAATAAATGATATAGTACTAATATAAT-ATA
*
13615997 TAAATAAATAATA-TAATAAAT-AT-TATTAATTTAATTAATAA
64 TAAAT-AATAATATTAATAAATAATATATTAATAT-ATTAATAA
* * * *
13616038 ATATTATAATAATATATTAATAAATAATATATATAATAAATGATATAGTATTAATATAATATATT
1 ATAATATAATAATATATTAATAAATAATATATAAAATAAATGATATAGTACTAATATAATATATA
*
13616103 AATAATTATATTAATAAATAATATATTAATATATTAATAA
66 AATAATAATATTAATAAATAATATATTAATATATTAATAA
13616143 ATAATATAA
1 ATAATATAA
13616152 AGAATAATAA
Statistics
Matches: 96, Mismatches: 10, Indels: 12
0.81 0.08 0.10
Matches are distributed among these distances:
101 3 0.03
102 30 0.31
103 10 0.10
104 17 0.18
105 28 0.29
106 8 0.08
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (105 bp):
ATAATATAATAATATATTAATAAATAATATATAAAATAAATGATATAGTACTAATATAATATATA
AATAATAATATTAATAAATAATATATTAATATATTAATAA
Found at i:13616158 original size:82 final size:83
Alignment explanation
Indices: 13616005--13616158 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 83
13615995 TATAAATAAA
* * *
13616005 TAATATAATAAATATTATTAATTTAATTAATAAATATTATAATAATATATTAATAAATAATATAT
1 TAATATAAT-AATATTAATAATTTAATTAATAAATAATATAATAATATATTAATAAATAATATAA
*
13616070 ATAATAAATGATATAGTAT
65 AGAATAAATGATATAGTAT
*
13616089 TAATATAAT-ATATTAATAA-TTATATTAATAAATAATATATTAATATATTAATAAATAATATAA
1 TAATATAATAATATTAATAATTTA-ATTAATAAATAATATAATAATATATTAATAAATAATATAA
13616152 AGAATAA
65 AGAATAA
13616159 TAAATAGTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
81 3 0.05
82 52 0.81
84 9 0.14
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (83 bp):
TAATATAATAATATTAATAATTTAATTAATAAATAATATAATAATATATTAATAAATAATATAAA
GAATAAATGATATAGTAT
Found at i:13616160 original size:27 final size:26
Alignment explanation
Indices: 13615762--13616148 Score: 110
Period size: 27 Copynumber: 14.3 Consensus size: 26
13615752 TTTACTTATA
*
13615762 AATAATATTATATTAATAAAAAATAATATT
1 AATAATAATATATTAAT---AAATAATA-T
* *
13615792 ATATTATAATATATAAATAAATAATAT
1 A-ATAATAATATATTAATAAATAATAT
* *
13615819 ATTATTAATATATT-AT--ATAATA-
1 AATAATAATATATTAATAAATAATAT
*
13615841 AATAATATTATATT-AT-AAT-ATATT
1 AATAATAATATATTAATAAATAATA-T
* * *
13615865 AACAAATATACTATATGAATAAGTAATAT
1 AA-TAATA-A-TATATTAATAAATAATAT
*
13615894 ACTATAAATATAATATATTCATAAATAATAT
1 A--AT--A-ATAATATATTAATAAATAATAT
* * *
13615925 --T-ACAATACATTCATAAATAATATT
1 AATAATAATATATTAATAAATAATA-T
*
13615949 ATATTAATAA-ATATTATTACAAATAAATAT
1 A-A-TAATAATATATTA--ATAAAT-AATAT
* *
13615979 TATACTAATATATTAATATAAATAA-AT
1 AATAATAATATATT-A-ATAAATAATAT
* *
13616006 AAT-ATAATAAATATTATTAATTTAAT-T
1 AATAATAAT--ATATTAATAA-ATAATAT
* * *
13616033 AATAAATATTATAATAATATATTAATA-
1 AAT-AATAATATATTAATA-AATAATAT
13616060 AATAAT-ATATA-TAATAAATGATATAGT
1 AATAATAATATATTAATAAAT-A-ATA-T
* *
13616087 ATTAATATAATATATTAAT-AATTATATT
1 AAT-A-ATAATATATTAATAAATAATA-T
*
13616115 AATAAATAATATATTAATATATTAATA-
1 AAT-AATAATATATTAATA-AATAATAT
13616142 AATAATA
1 AATAATA
13616149 TAAAGAATAA
Statistics
Matches: 271, Mismatches: 42, Indels: 92
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.06
23 29 0.11
24 9 0.03
25 13 0.05
26 23 0.08
27 53 0.20
28 37 0.14
29 30 0.11
30 19 0.07
31 37 0.14
32 2 0.01
33 3 0.01
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.41
Consensus pattern (26 bp):
AATAATAATATATTAATAAATAATAT
Found at i:13616207 original size:19 final size:18
Alignment explanation
Indices: 13616180--13616248 Score: 59
Period size: 19 Copynumber: 3.7 Consensus size: 18
13616170 ATTTTAAGTG
*
13616180 TTTTTATATTAACATAATA
1 TTTTAATATTAA-ATAATA
*
13616199 TTTTAATATTAAATATTA
1 TTTTAATATTAAATAATA
* * *
13616217 TTATTAA-AATATAATTATT
1 TT-TTAATATTA-AATAATA
13616236 TTTTAATATTAAA
1 TTTTAATATTAAA
13616249 ATTTTAATGT
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
18 16 0.40
19 24 0.60
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTAATATTAAATAATA
Found at i:13623789 original size:32 final size:32
Alignment explanation
Indices: 13623744--13623808 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
13623734 ATTGAAGTCT
*
13623744 TTGCTTACGAGCTTTCTTCTAAAATAATTTCA
1 TTGCTTACAAGCTTTCTTCTAAAATAATTTCA
13623776 TTGCTTACAAGCTTTCTTCTAAAATAATTTCA
1 TTGCTTACAAGCTTTCTTCTAAAATAATTTCA
13623808 T
1 T
13623809 GTATTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (32 bp):
TTGCTTACAAGCTTTCTTCTAAAATAATTTCA
Found at i:13626794 original size:21 final size:20
Alignment explanation
Indices: 13626769--13626809 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
13626759 AATTAATTTT
13626769 AATATTATTGAATTACTGATC
1 AATATTATTGAATTAC-GATC
*
13626790 AATATTATTGAGTTACGATC
1 AATATTATTGAATTACGATC
13626810 CATGAATGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (20 bp):
AATATTATTGAATTACGATC
Found at i:13633533 original size:16 final size:16
Alignment explanation
Indices: 13633512--13633554 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
13633502 TTGAAAGATT
13633512 AATTTAAAATAAT-TCA
1 AATTTAAAATAATCT-A
*
13633528 AATTTAAAGTAATCTA
1 AATTTAAAATAATCTA
*
13633544 ATTTTAAAATA
1 AATTTAAAATA
13633555 CAATAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 22 0.96
17 1 0.04
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (16 bp):
AATTTAAAATAATCTA
Found at i:13636778 original size:23 final size:23
Alignment explanation
Indices: 13636747--13636790 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
13636737 CAACAGTAAT
13636747 ATTAGTTTATAATATCATAGCAA
1 ATTAGTTTATAATATCATAGCAA
* *
13636770 ATTATTTTATTATATCATAGC
1 ATTAGTTTATAATATCATAGC
13636791 CTGTAATGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (23 bp):
ATTAGTTTATAATATCATAGCAA
Found at i:13637727 original size:2 final size:2
Alignment explanation
Indices: 13637715--13637768 Score: 72
Period size: 2 Copynumber: 27.0 Consensus size: 2
13637705 TTGTTAATGC
* * * *
13637715 TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA CA CA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13637757 TA TA TA TA TA TA
1 TA TA TA TA TA TA
13637769 ATTTTATTTC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:13639224 original size:13 final size:13
Alignment explanation
Indices: 13639206--13639230 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13639196 TTTTAAAAGG
13639206 TTTATAATTTTTA
1 TTTATAATTTTTA
13639219 TTTATAATTTTT
1 TTTATAATTTTT
13639231 TTGACCTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATAATTTTTA
Found at i:13642150 original size:14 final size:16
Alignment explanation
Indices: 13642126--13642159 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
13642116 AACACATACT
13642126 TTTTCA-TTTTTAAAA
1 TTTTCATTTTTTAAAA
13642141 TTTT-ATTTTTTAAAA
1 TTTTCATTTTTTAAAA
13642156 TTTT
1 TTTT
13642160 TCATAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.06
15 17 0.94
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTCATTTTTTAAAA
Found at i:13643219 original size:13 final size:13
Alignment explanation
Indices: 13643203--13643227 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13643193 AACAATTAAA
13643203 AATATGATATGAT
1 AATATGATATGAT
13643216 AATATGATATGA
1 AATATGATATGA
13643228 AAATGAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (13 bp):
AATATGATATGAT
Found at i:13644173 original size:24 final size:24
Alignment explanation
Indices: 13644115--13644182 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 24
13644105 AAATATATTA
* *
13644115 ATTATTAATTATTAATTTTATTATC
1 ATTATT-ATTTTTAATATTATTATC
* *
13644140 A-TA--ATATTTAATCTTATTATC
1 ATTATTATTTTTAATATTATTATC
13644161 ATTATTATTTTTAATATTATTA
1 ATTATTATTTTTAATATTATTA
13644183 AACTCAATCT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
21 16 0.46
22 2 0.06
24 16 0.46
25 1 0.03
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (24 bp):
ATTATTATTTTTAATATTATTATC
Found at i:13644366 original size:23 final size:23
Alignment explanation
Indices: 13644330--13644373 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
13644320 AGATATCATC
*
13644330 TTATTAATAATTAATATAAATTT
1 TTATTAATAATTAAAATAAATTT
**
13644353 TTATTAATTTTTAAAATAAAT
1 TTATTAATAATTAAAATAAAT
13644374 ACATAAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TTATTAATAATTAAAATAAATTT
Found at i:13653930 original size:25 final size:25
Alignment explanation
Indices: 13653884--13653931 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
13653874 CCATATTAAG
*
13653884 TCAAAATTAATGTCTTTAAAAATCT
1 TCAAAATTAATGTATTTAAAAATCT
*
13653909 TCAAAATTTATG-ATTTACAAAAT
1 TCAAAATTAATGTATTTA-AAAAT
13653932 TTTAAGTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (25 bp):
TCAAAATTAATGTATTTAAAAATCT
Found at i:13656641 original size:16 final size:17
Alignment explanation
Indices: 13656594--13656642 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 17
13656584 AATTAATTCA
13656594 ATATTTTTAATTTAAAATC
1 ATATTTTTAA--TAAAATC
*
13656613 ATATTTAT-A-AAAAT-
1 ATATTTTTAATAAAATC
13656627 ATATTTTTAATAAAAT
1 ATATTTTTAATAAAAT
13656643 TTACTGGTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
14 7 0.27
15 6 0.23
16 5 0.19
18 1 0.04
19 7 0.27
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATTTTTAATAAAATC
Found at i:13656641 original size:17 final size:18
Alignment explanation
Indices: 13656594--13656641 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
13656584 AATTAATTCA
*
13656594 ATATTTTTAATTTAAAATC
1 ATATTTTTAA-TAAAAATC
13656613 ATA--TTT-ATAAAAAT-
1 ATATTTTTAATAAAAATC
13656627 ATATTTTTAATAAAA
1 ATATTTTTAATAAAA
13656642 TTTACTGGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
14 3 0.12
15 6 0.24
16 4 0.16
17 9 0.36
19 3 0.12
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATTTTTAATAAAAATC
Found at i:13658290 original size:105 final size:105
Alignment explanation
Indices: 13658170--13658387 Score: 330
Period size: 105 Copynumber: 2.1 Consensus size: 105
13658160 ATAATTACTT
* * *
13658170 GCTTCAAAATGGCAGTAATTCACCAAAGA-GTAGTAAATATGAAGCTTTTTTCTCTCACTAGCAT
1 GCTTCCAAATGGCAGTAATTCACCAAA-ATGTAGTAAATATGAAGCCTTTTTCTCTCACGAGCAT
*
13658234 ACGTGTTCCAGTCACCCAAGTTACTAAACCAACCTTCAAAA
65 ACGTGTCCCAGTCACCCAAGTTACTAAACCAACCTTCAAAA
** *
13658275 GCTTCCAAATGGCAGTAATTCACCAAAATGTAGTATTTATGAAGCCTTTTTCTCTGACGAGCATA
1 GCTTCCAAATGGCAGTAATTCACCAAAATGTAGTAAATATGAAGCCTTTTTCTCTCACGAGCATA
**
13658340 CGTGTCCCAGTCACCCAAGTTACTAAACTGACCTTCAAAA
66 CGTGTCCCAGTCACCCAAGTTACTAAACCAACCTTCAAAA
*
13658380 ACTTCCAA
1 GCTTCCAA
13658388 CTTGTTCAAC
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
104 1 0.01
105 101 0.99
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (105 bp):
GCTTCCAAATGGCAGTAATTCACCAAAATGTAGTAAATATGAAGCCTTTTTCTCTCACGAGCATA
CGTGTCCCAGTCACCCAAGTTACTAAACCAACCTTCAAAA
Found at i:13662782 original size:23 final size:23
Alignment explanation
Indices: 13662755--13662823 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 23
13662745 CAAGAACAAT
13662755 TTTAACAAACATGTAAATTTAAG
1 TTTAACAAACATGTAAATTTAAG
* *
13662778 TTT----AATAT-TATAA-TTAAT
1 TTTAACAAACATGTA-AATTTAAG
13662796 TTTAACAAACATGTAAATTTAAG
1 TTTAACAAACATGTAAATTTAAG
13662819 TTTAA
1 TTTAA
13662824 TATATATGCA
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
18 9 0.26
19 6 0.17
22 6 0.17
23 14 0.40
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (23 bp):
TTTAACAAACATGTAAATTTAAG
Found at i:13662836 original size:23 final size:22
Alignment explanation
Indices: 13662769--13662836 Score: 54
Period size: 23 Copynumber: 3.2 Consensus size: 22
13662759 ACAAACATGT
13662769 AAATTTAAGTTTAATAT-TAT-
1 AAATTTAAGTTTAATATATATG
* * * *
13662789 -AA-TTAATTTTAACAAACATG
1 AAATTTAAGTTTAATATATATG
13662809 TAAATTTAAGTTTAATATATATG
1 -AAATTTAAGTTTAATATATATG
13662832 CAAAT
1 -AAAT
13662837 ATTATAATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 7
0.68 0.18 0.14
Matches are distributed among these distances:
18 10 0.29
19 4 0.12
22 2 0.06
23 18 0.53
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (22 bp):
AAATTTAAGTTTAATATATATG
Found at i:13667229 original size:59 final size:59
Alignment explanation
Indices: 13667094--13667618 Score: 583
Period size: 59 Copynumber: 8.9 Consensus size: 59
13667084 TTGTGTAGGA
* * * *
13667094 AAAATTGATACTTTCAACTTTTCCC-CAAAA-ATCTTTTT-GAAAATTT-ATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCCTAAAAACAT-TTTTTGGAAATTTTGATTTTCAAGG
* *
13667150 AAAATTGATACTTTCAACTTTTCCTTAAAAACATTTTTTGAAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAACATTTTTTGGAAATTTTGATTTTCAAGG
* * *
13667209 GAAATTGATACTTTCAACTTTT-CCTCAAAAACCCCTTTTTT-GAAA-TTT-ATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAA--CATTTTTTGGAAATTTTGATTTTCAAGG
* *
13667267 AAAATTGATACTCTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAACA-TTTTTTGGAAATTTTGATTTTCAAGG
* * ** * *
13667327 AAAATTGATACTTTCAACTTTT-CCTCAAAACCTTTTTTTTTTTAAA-TTT-ATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAAC--ATTTTTTGGAAATTTTGATTTTCAAGG
* *
13667386 AAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTGGAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAACATTTTTTGGAAATTTTGATTTTCAAGG
* *
13667445 AAAATTGATACTTTCAACTTTTCCCTAAAAATAATTTTTTGGAAATCTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAA-CATTTTTTGGAAATTTTGATTTTCAAGG
* * ** *
13667505 AAAATTGATACTTTCAACTTTT-TCTCAAAAACCTTTTTTTTTTAAA-TTT-ATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAA-C-ATTTTTTGGAAATTTTGATTTTCAAGG
* *
13667564 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATCTTGATTTT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAACA-TTTTTTGGAAATTTTGATTTT
13667619 TATTTAAAGA
Statistics
Matches: 395, Mismatches: 49, Indels: 46
0.81 0.10 0.09
Matches are distributed among these distances:
56 24 0.06
57 23 0.06
58 60 0.15
59 159 0.40
60 104 0.26
61 25 0.06
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAACATTTTTTGGAAATTTTGATTTTCAAGG
Found at i:13667490 original size:178 final size:175
Alignment explanation
Indices: 13667094--13667618 Score: 704
Period size: 178 Copynumber: 3.0 Consensus size: 175
13667084 TTGTGTAGGA
* * * * *
13667094 AAAATTGATACTTTCAACTTTTCCCCAAAAAT-CTTTTT-GAAAATTT-ATTTTTAAGAAAAATT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTCAAGGAAAATT
* * * ** * *
13667156 GATACTTTCAACTTTTCCTTAAAAAC-ATTTTTTGAAAATTTTGATTTTCAAGGGAAATTGATAC
66 GATACTTTCAACTTTTCCTCAAAACCTTTTTTTTTTAAA-TTT-ATTTTTAAGGAAAATTGATAC
** * *
13667220 TTTCAACTTTT-CCTCAAAAACCCCTTTTTTGAAA-TTT-ATTTTTAAGG
129 TTTCAACTTTTCCCT-AAAAA--TATTTTTGGAAATTTTGATTTTCAAGG
*
13667267 AAAATTGATACTCTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTTGATTTTCAAGGAAAAT
*
13667332 TGATACTTTCAACTTTTCCTCAAAACCTTTTTTTTTTTAAATTTATTTTTAAGAAAAATTGATAC
65 TGATACTTTCAACTTTTCCTCAAAACC-TTTTTTTTTTAAATTTATTTTTAAGGAAAATTGATAC
13667397 TTTCAACTTTTCCCTAAAAATATATTTTGGAAATTTTGATTTTCAAGG
129 TTTCAACTTTTCCCTAAAAATAT-TTTTGGAAATTTTGATTTTCAAGG
*
13667445 AAAATTGATACTTTCAACTTTTCCCTAAAAATAATTTTTTGGAAATCTTGATTTTCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAAT-ATTTTTTGGAAATTTTGATTTTCAAGGAAAAT
*
13667510 TGATACTTTCAACTTTTTCTCAAAAACCTTTTTTTTTTAAATTTATTTTTAAGGAAAATTGATAC
65 TGATACTTTCAACTTTTCCTC-AAAACCTTTTTTTTTTAAATTTATTTTTAAGGAAAATTGATAC
*
13667575 TTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATCTTGATTTT
129 TTTCAACTTTTCCCTAAAAATA--TTTTTGGAAATTTTGATTTT
13667619 TATTTAAAGA
Statistics
Matches: 315, Mismatches: 23, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
173 30 0.10
175 6 0.02
176 15 0.05
177 75 0.24
178 154 0.49
179 34 0.11
180 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (175 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTCAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAACCTTTTTTTTTTAAATTTATTTTTAAGGAAAATTGATACTT
TCAACTTTTCCCTAAAAATATTTTTGGAAATTTTGATTTTCAAGG
Found at i:13667588 original size:119 final size:117
Alignment explanation
Indices: 13667094--13667620 Score: 665
Period size: 119 Copynumber: 4.5 Consensus size: 117
13667084 TTGTGTAGGA
* * *
13667094 AAAATTGATACTTTCAACTTTTCCC-CAAAA-ATCTTTTTGAAAATTTATTTTTAAGAAAAATTG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTATTTTTAAGAAAAATTG
* * *
13667157 ATACTTTCAACTTTTCCTTAAAAACATTTTTTGAAAATTTTGATTTTCAAGG
66 ATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTCAAGG
* *** *
13667209 GAAATTGATACTTTCAACTTTT-CCTCAAAAACCCCTTTTTT-GAAATTTATTTTTAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAA-TATTTTTTTGGAAATTTATTTTTAAGAAAAAT
*
13667272 TGATACTCTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTCAAGG
64 TGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTTGATTTTCAAGG
* * **
13667327 AAAATTGATACTTTCAACTTTT-CCTCAAAACCTTTTTTTTTTTAAATTTATTTTTAAGAAAAAT
1 AAAATTGATACTTTCAACTTTTCCCT-AAAA-ATATTTTTTTGGAAATTTATTTTTAAGAAAAAT
*
13667391 TGATACTTTCAACTTTTCCCTAAAAATATATTTTGGAAATTTTGATTTTCAAGG
64 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTCAAGG
* * *
13667445 AAAATTGATACTTTCAACTTTTCCCTAAAAATAATTTTTTGGAAATCTTGATTTTCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAAT-TT-ATTTTTAAGAAAAAT
* * ** *
13667510 TGATACTTTCAACTTTT-TCTCAAAAACCTTTTTTTTTTAAA-TTT-ATTTTTAAGG
64 TGATACTTTCAACTTTTCCCT-AAAAA--TATTTTTTGGAAATTTTGATTTTCAAGG
13667564 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATCTTGATTTTTA
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAAT-TT-ATTTTTA
13667621 TTTAAAGAAA
Statistics
Matches: 364, Mismatches: 35, Indels: 22
0.86 0.08 0.05
Matches are distributed among these distances:
114 2 0.01
115 21 0.06
116 4 0.01
117 56 0.15
118 120 0.33
119 149 0.41
120 3 0.01
121 9 0.02
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (117 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTATTTTTAAGAAAAATTG
ATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTTGATTTTCAAGG
Found at i:13667648 original size:17 final size:15
Alignment explanation
Indices: 13667623--13667677 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
13667613 GATTTTTATT
*
13667623 TAAAGAAAATAGAATAA
1 TAAAAAAAATA-AA-AA
*
13667640 TAAAAAAAATAAAAG
1 TAAAAAAAATAAAAA
*
13667655 TGAAAATAAATAAAAA
1 T-AAAAAAAATAAAAA
13667671 TAAAAAA
1 TAAAAAA
13667678 TAAAGAAAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 7 0.22
16 15 0.47
17 10 0.31
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.16
Consensus pattern (15 bp):
TAAAAAAAATAAAAA
Found at i:13667660 original size:16 final size:15
Alignment explanation
Indices: 13667640--13667694 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
13667630 AATAGAATAA
13667640 TAAAAAAAATAAAAG
1 TAAAAAAAATAAAAG
* *
13667655 TGAAAATAAATAAAAA
1 T-AAAAAAAATAAAAG
*
13667671 TAAAAAATAAAGAAAAG
1 T-AAAAA-AAATAAAAG
13667688 TAAAAAA
1 TAAAAAA
13667695 TAAAATAAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
15 2 0.06
16 22 0.69
17 8 0.25
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (15 bp):
TAAAAAAAATAAAAG
Found at i:13667673 original size:34 final size:35
Alignment explanation
Indices: 13667635--13667711 Score: 95
Period size: 35 Copynumber: 2.2 Consensus size: 35
13667625 AAGAAAATAG
* *
13667635 AATAATAAAAAAAATAAAAGT-GAAAAT-AAATAAA
1 AATAA-AAAAAAAAGAAAAGTAAAAAATAAAATAAA
*
13667669 AATAAAAAATAAAGAAAAGTAAAAAATAAAATAAA
1 AATAAAAAAAAAAGAAAAGTAAAAAATAAAATAAA
*
13667704 GATAAAAA
1 AATAAAAA
13667712 GAATATTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 13 0.35
34 10 0.27
35 14 0.38
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (35 bp):
AATAAAAAAAAAAGAAAAGTAAAAAATAAAATAAA
Found at i:13667678 original size:17 final size:17
Alignment explanation
Indices: 13667635--13667711 Score: 75
Period size: 17 Copynumber: 4.5 Consensus size: 17
13667625 AAGAAAATAG
*
13667635 AATAATAAAAAAAATAAA
1 AATAA-AAAATAAATAAA
* *
13667653 AGT-GAAAATAAATAAA
1 AATAAAAAATAAATAAA
*
13667669 AATAAAAAATAAAGAAA
1 AATAAAAAATAAATAAA
*
13667686 AGTAAAAAATAAAATAAA
1 AATAAAAAAT-AAATAAA
*
13667704 GATAAAAA
1 AATAAAAA
13667712 GAATATTAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
16 13 0.28
17 20 0.43
18 14 0.30
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (17 bp):
AATAAAAAATAAATAAA
Found at i:13668685 original size:3 final size:3
Alignment explanation
Indices: 13668679--13668711 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
13668669 ATAAAAAAAT
*
13668679 ATA ATA ATA ATA ACA ATA AT- ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
13668712 ATATAACTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:13668723 original size:23 final size:21
Alignment explanation
Indices: 13668675--13668744 Score: 74
Period size: 20 Copynumber: 3.3 Consensus size: 21
13668665 CAAGATAAAA
13668675 AAATATAATAATAATAACA-AT
1 AAATATAATAATAATAA-ATAT
13668696 -AATATAATAATAATAAATAT
1 AAATATAATAATAATAAATAT
*
13668716 AACTATATAAATAA-AATACATAT
1 AA--ATAT-AATAATAATAAATAT
13668739 AAATAT
1 AAATAT
13668745 TAACAGGAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
19 1 0.02
20 18 0.42
21 5 0.12
23 14 0.33
24 5 0.12
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (21 bp):
AAATATAATAATAATAAATAT
Found at i:13668829 original size:17 final size:16
Alignment explanation
Indices: 13668788--13668826 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
13668778 TACATATATT
*
13668788 AATACATAATAATAATA
1 AATAAATAATAA-AATA
13668805 AATAAATAATAAAATA
1 AATAAATAATAAAATA
*
13668821 CATAAA
1 AATAAA
13668827 ATATAAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (16 bp):
AATAAATAATAAAATA
Found at i:13669625 original size:15 final size:15
Alignment explanation
Indices: 13669601--13669649 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
13669591 TTTTCCTTTC
*
13669601 TTATTTTTTTGTTTT
1 TTATTTTTTTATTTT
13669616 TTATTTTTTTATTTT
1 TTATTTTTTTATTTT
*
13669631 TTTTGTTTATTTATTTT
1 TTAT-TTT-TTTATTTT
13669648 TT
1 TT
13669650 TAAAGAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 17 0.57
16 3 0.10
17 10 0.33
ACGTcount: A:0.10, C:0.00, G:0.04, T:0.86
Consensus pattern (15 bp):
TTATTTTTTTATTTT
Found at i:13669643 original size:17 final size:17
Alignment explanation
Indices: 13669612--13669650 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
13669602 TATTTTTTTG
*
13669612 TTTTTTATTTTTTTATT
1 TTTTTTATTTATTTATT
*
13669629 TTTTTTGTTTATTTATT
1 TTTTTTATTTATTTATT
13669646 TTTTT
1 TTTTT
13669651 AAAGAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.03, T:0.87
Consensus pattern (17 bp):
TTTTTTATTTATTTATT
Found at i:13669647 original size:24 final size:24
Alignment explanation
Indices: 13669604--13669651 Score: 87
Period size: 25 Copynumber: 2.0 Consensus size: 24
13669594 TCCTTTCTTA
13669604 TTTTTTTGTTTTTTATTTTTTTAT
1 TTTTTTTGTTTTTTATTTTTTTAT
13669628 TTTTTTTGTTTATTTATTTTTTTA
1 TTTTTTTGTTT-TTTATTTTTTTA
13669652 AAGAAAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.10, C:0.00, G:0.04, T:0.85
Consensus pattern (24 bp):
TTTTTTTGTTTTTTATTTTTTTAT
Found at i:13669651 original size:8 final size:8
Alignment explanation
Indices: 13669601--13669651 Score: 61
Period size: 8 Copynumber: 6.4 Consensus size: 8
13669591 TTTTCCTTTC
13669601 TTATTTTT
1 TTATTTTT
*
13669609 TT-GTTTT
1 TTATTTTT
13669616 TTATTTTT
1 TTATTTTT
13669624 TTATTTTT
1 TTATTTTT
13669632 TT-TGTTTAT
1 TTAT-TTT-T
13669641 TTATTTTT
1 TTATTTTT
13669649 TTA
1 TTA
13669652 AAGAAAAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 7 0.19
8 23 0.62
9 6 0.16
10 1 0.03
ACGTcount: A:0.12, C:0.00, G:0.04, T:0.84
Consensus pattern (8 bp):
TTATTTTT
Found at i:13670598 original size:20 final size:21
Alignment explanation
Indices: 13670560--13670598 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
13670550 TTGTAGACAC
13670560 CCAATTGGGTCCAGGCCCAGA
1 CCAATTGGGTCCAGGCCCAGA
*
13670581 CCAATTGGG-CCTGGCCCA
1 CCAATTGGGTCCAGGCCCA
13670599 AAGGGGGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.36, G:0.28, T:0.15
Consensus pattern (21 bp):
CCAATTGGGTCCAGGCCCAGA
Found at i:13670792 original size:25 final size:24
Alignment explanation
Indices: 13670710--13670792 Score: 64
Period size: 25 Copynumber: 3.3 Consensus size: 24
13670700 ATGTACTAAC
*
13670710 ATATGTATATAT-TGATTTATTTAGTT
1 ATAT-TATATATGTAATTTATTTA--T
13670736 AATATT-TATATGTAATTTATTTAT
1 -ATATTATATATGTAATTTATTTAT
*
13670760 ATAGTTATATATGTATTATTA-TTAT
1 ATA-TTATATATGTAAT-TTATTTAT
13670785 ATTATTAT
1 A-TATTAT
13670793 TATTTTTTTA
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
23 3 0.06
24 3 0.06
25 23 0.47
26 16 0.33
27 4 0.08
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (24 bp):
ATATTATATATGTAATTTATTTAT
Found at i:13670858 original size:36 final size:38
Alignment explanation
Indices: 13670781--13670860 Score: 94
Period size: 36 Copynumber: 2.2 Consensus size: 38
13670771 TGTATTATTA
* * *
13670781 TTATATTATTATTATTTTTTTATAATATATTTTTAGGT
1 TTATCTTATTATTATTTTTTTATAATATATTGTTAAGT
*
13670819 TTATCTTATT-TTATTTTTTTA-AAT-TATCTGTTAATT
1 TTATCTTATTATTATTTTTTTATAATATAT-TGTTAAGT
13670855 TTATCT
1 TTATCT
13670861 GATCCTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
35 3 0.08
36 14 0.38
37 11 0.30
38 9 0.24
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (38 bp):
TTATCTTATTATTATTTTTTTATAATATATTGTTAAGT
Found at i:13671789 original size:10 final size:10
Alignment explanation
Indices: 13671774--13671798 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
13671764 TGTAATATTC
13671774 TTTTTATTTA
1 TTTTTATTTA
13671784 TTTTTATTTA
1 TTTTTATTTA
13671794 TTTTT
1 TTTTT
13671799 TTATTATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTATTTA
Done.