Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 75 of 147
Found at i:13987198 original size:22 final size:22
Alignment explanation
Indices: 13987146--13987198 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
13987136 ATAACTTAGT
* **
13987146 AGTAAATAATTAAAAATTTAGT
1 AGTAAATCATTAAAAATTTAAA
** *
13987168 AGTTGATCATTGAAAATTTAAA
1 AGTAAATCATTAAAAATTTAAA
13987190 AGTAAATCA
1 AGTAAATCA
13987199 ATAGCTAATA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.34
Consensus pattern (22 bp):
AGTAAATCATTAAAAATTTAAA
Found at i:13987367 original size:22 final size:23
Alignment explanation
Indices: 13987342--13987405 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
13987332 TTAAATCACA
* *
13987342 AATAACTTAGTAGTAAATTAGT-
1 AATAATTTAGTAGTAAATTAATG
*
13987364 AATAATTTAGCT-GTAAATCAATG
1 AATAATTTAG-TAGTAAATTAATG
13987387 AA-AATTTAGTAGTAAATTA
1 AATAATTTAGTAGTAAATTA
13987406 CTTAATCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 1 0.03
22 31 0.89
23 3 0.09
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.36
Consensus pattern (23 bp):
AATAATTTAGTAGTAAATTAATG
Found at i:13987396 original size:33 final size:31
Alignment explanation
Indices: 13987355--13987433 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 31
13987345 AACTTAGTAG
*
13987355 TAAA-TTAGTAATAATTTAGCTGTAAATCAATGA
1 TAAATTTAGTAATAAATTA-CT-T-AATCAATGA
*
13987388 -AAATTTAGTAGTAAATTACTTAATCAATGA
1 TAAATTTAGTAATAAATTACTTAATCAATGA
*
13987418 TAACTTTA-TAATAAAT
1 TAAATTTAGTAATAAAT
13987434 ATCGATAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
30 16 0.40
31 7 0.17
32 5 0.12
33 12 0.30
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (31 bp):
TAAATTTAGTAATAAATTACTTAATCAATGA
Found at i:13987587 original size:22 final size:22
Alignment explanation
Indices: 13987562--13987610 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
13987552 ACTAGCTGTG
* *
13987562 AATCATGGATAATTTATTAGTA
1 AATCATGGATAACTTAATAGTA
*
13987584 AATCATTGATAACTTAATAGTA
1 AATCATGGATAACTTAATAGTA
13987606 AATCA
1 AATCA
13987611 CTATAATATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (22 bp):
AATCATGGATAACTTAATAGTA
Found at i:13988303 original size:22 final size:21
Alignment explanation
Indices: 13988246--13988318 Score: 67
Period size: 22 Copynumber: 3.4 Consensus size: 21
13988236 ACTAATTTTA
*
13988246 TAGTAAAT-AATAAAAAACTAAG
1 TAGTAAATAAATAAAACA-T-AG
13988268 TAGTAAATAAATAATAACATAG
1 TAGTAAATAAATAA-AACATAG
** * *
13988290 TAGTAAATGCATAAAATATAT
1 TAGTAAATAAATAAAACATAG
13988311 TAGTAAAT
1 TAGTAAAT
13988319 CATTGATAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
21 13 0.30
22 22 0.50
23 6 0.14
24 3 0.07
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (21 bp):
TAGTAAATAAATAAAACATAG
Found at i:13990143 original size:67 final size:67
Alignment explanation
Indices: 13989889--13990145 Score: 249
Period size: 67 Copynumber: 3.9 Consensus size: 67
13989879 GGTTTTGTTG
* * * ** *
13989889 GGCTTTCTTTACCTTTTGT-TTTCTTCA-ATTTAAAAGCAATATTTATGT-ATTAATTGTGT-TT
1 GGCTTTCTTTACCTTTTCTATTTCTTTAGTTTTAAAAATAATATTTAT-TAATTAATTATGTATT
13989950 TCTT
65 T-TT
* * * *
13989954 GGCTTTCTTTGCCTTTT-TATTTTTTTA-TTTTAAAAATAATATTTATTAATTAATTGTGTATCT
1 GGCTTTCTTTACCTTTTCTATTTCTTTAGTTTTAAAAATAATATTTATTAATTAATTATGTATTT
13990017 TT
66 TT
* * * * *
13990019 GGCTTTCTTTACCTTTTCTTTTTC-TTCGATTTTAAAAAGAAAATTTATTAATAAATTATGTATT
1 GGCTTTCTTTACCTTTTCTATTTCTTTAG-TTTTAAAAATAATATTTATTAATTAATTATGTATT
13990083 TTT
65 TTT
* ** * **
13990086 TGCTTTCTTTTTCTTTTCAATTTCTTTAGTTTTAAAAATAATATTTATCGATTAATTATG
1 GGCTTTCTTTACCTTTTCTATTTCTTTAGTTTTAAAAATAATATTTATTAATTAATTATG
13990146 ATCATTGGTT
Statistics
Matches: 158, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
64 2 0.01
65 69 0.44
66 6 0.04
67 78 0.49
68 3 0.02
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.56
Consensus pattern (67 bp):
GGCTTTCTTTACCTTTTCTATTTCTTTAGTTTTAAAAATAATATTTATTAATTAATTATGTATTT
TT
Found at i:13990836 original size:4 final size:4
Alignment explanation
Indices: 13990811--13990854 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
13990801 TATATAATCT
* * * *
13990811 TGTA TGCA TGTA TGTT TTTA TGTA TGTA TGTA TTTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
13990855 CATATATATA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.23, C:0.02, G:0.20, T:0.55
Consensus pattern (4 bp):
TGTA
Found at i:13990837 original size:16 final size:16
Alignment explanation
Indices: 13990813--13990854 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
13990803 TATAATCTTG
* *
13990813 TATGCATGTATGTTTT
1 TATGTATGTATGTATT
13990829 TATGTATGTATGTATT
1 TATGTATGTATGTATT
13990845 TATGTATGTA
1 TATGTATGTA
13990855 CATATATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.24, C:0.02, G:0.19, T:0.55
Consensus pattern (16 bp):
TATGTATGTATGTATT
Found at i:13998685 original size:631 final size:631
Alignment explanation
Indices: 13997205--13999722 Score: 4741
Period size: 631 Copynumber: 4.0 Consensus size: 631
13997195 TCATTTCATC
**
13997205 TCTTATAATTAAACCCACAAAGTTCTTCAATAGTAGCTTGATTGTTATTGACAGTATAAGTCACT
1 TCTTATAATTAAACCCACAAAGTTCTTTGATAGTAGCTTGATTGTTATTGACAGTATAAGTCACT
13997270 ATTCAAGACAAAATGCAATATTAGTCAATGAGCAATATCATAAATTGTATAGCAACTATTCATGA
66 ATTCAAGACAAAATGCAATATTAGTCAATGAGCAATATCATAAATTGTATAGCAACTATTCATGA
* *
13997335 TGTGCTAACAATTACTAAAAAATCTAAGTGCATTATCATAAACTCCTCTTTGGGCAGAGAATGCA
131 TGTGCTAACAATTACTAAAAGATCCAAGTGCATTATCATAAACTCCTCTTTGGGCAGAGAATGCA
*
13997400 ACATGTGATTAGGAACTTTTCACATAAAGCTAATATGAGAATGTCCTAGTTTTCAAAAACTTATC
196 ACATGTGATTAGGAACTTTTCACATAAAGCTAATATGAGAATGTCCTAGTTTTCAAAAACCTATC
* *
13997465 ACCTTTAGGTAGATTGATTTTCTAGACCAATACACCCTCAACCATGATGCTCTATGATCCAAAAC
261 CCCTTTAGGTAGATTGATTTTCTAGACCAATACACCCTCAACCATGATGCTTTATGATCCAAAAC
* *
13997530 AAATTACCCTACACATTAACTCCCTTTGGGTAGGAAAAAACATAAGATAATTTAATAACCATCCC
326 AAATTACCCTACACATTAACTCCCTTTGGGCATGAAAAAACATAAGATAATTTAATAACCATCCC
13997595 ATAACTTTAGAATGATAAAATATTCCATTAACTTCAATAAGTGAGCCACTTTGGAAACCAAACAC
391 ATAACTTTAGAATGATAAAATATTCCATTAACTTCAATAAGTGAGCCACTTTGGAAACCAAACAC
*
13997660 TTATATCAATTAATGAAAACTTTTTCAAATTGAAAATTTTCATTAATCGCCAAAAATTCTCAGTT
456 TTATATCAATTAATGAAAACTTTTTCAAATTGAAAATTTTCATTAATTGCC-AAAATTCTCAGTT
*
13997725 TGCATATTCAACCTTAATATATGCAATGAACCATTCTAGCTGAGATACTAAACCTTGATTTATCT
520 TGCATATTCAACCTTAATGTATGCAATGAACCATTCTAGCTGAGATACTAAACCTTGATTTATCT
13997790 TATTAGGTACTATAAACAATGTTTATTACATTTAAACTTGATTGTTA
585 TATTAGGTACTATAAACAATGTTTATTACATTTAAACTTGATTGTTA
*
13997837 TCTTATAATTAAACCCACAAAGTTCTTTGATAGTAGCTTGATTGTTATTGACAGTATAAGTTACT
1 TCTTATAATTAAACCCACAAAGTTCTTTGATAGTAGCTTGATTGTTATTGACAGTATAAGTCACT
13997902 ATTCAAGACAAAATGCAATATTAGTCAATGAGCAATATCATAAATTGTATAGCAACTATTCATGA
66 ATTCAAGACAAAATGCAATATTAGTCAATGAGCAATATCATAAATTGTATAGCAACTATTCATGA
13997967 TGTGCTAACAATTACTAAAAGATCCAAGTGCATTATCATAAACTCCTCTTTGGGCAGAGAATGCA
131 TGTGCTAACAATTACTAAAAGATCCAAGTGCATTATCATAAACTCCTCTTTGGGCAGAGAATGCA
*
13998032 ACATGTGATTAGGAACTTTTCACATAAAGCTAATATGAGAATGTCTTAGTTTTCAAAAACCTATC
196 ACATGTGATTAGGAACTTTTCACATAAAGCTAATATGAGAATGTCCTAGTTTTCAAAAACCTATC
*
13998097 CCCTTTAGGTAGATTGATTTTCTAGACCAATATACCCTCAACCATGATGCTTTATGATCCAAAAC
261 CCCTTTAGGTAGATTGATTTTCTAGACCAATACACCCTCAACCATGATGCTTTATGATCCAAAAC
*
13998162 AGATTACCCTACACATTAACTCCCTTTGGGCATGAAAAAACATAAGATAATTTAATAACCATCCC
326 AAATTACCCTACACATTAACTCCCTTTGGGCATGAAAAAACATAAGATAATTTAATAACCATCCC
*
13998227 ATAACTTTATAATGATAAAATATTCCATTAACTTCAATAAGTGAGCCACTTTGGAAACCAAACAC
391 ATAACTTTAGAATGATAAAATATTCCATTAACTTCAATAAGTGAGCCACTTTGGAAACCAAACAC
13998292 TTATATCAATTAATGAAAACTTTTTCAAATTGAAAATTTTCATTAATTGCCAAAATTCTCAGTTT
456 TTATATCAATTAATGAAAACTTTTTCAAATTGAAAATTTTCATTAATTGCCAAAATTCTCAGTTT
13998357 GCATATTCAACCTTAATGTATGCAATGAACCATTCTAGCTGAGATACTAAACCTTGATTTATCTT
521 GCATATTCAACCTTAATGTATGCAATGAACCATTCTAGCTGAGATACTAAACCTTGATTTATCTT
13998422 ATTAGGTACTATAAACAATGTTTATTACATTTAAACTTGATTGTTA
586 ATTAGGTACTATAAACAATGTTTATTACATTTAAACTTGATTGTTA
*
13998468 TCTTATAATTAAACCCACAAAGTTATTTGATAGTAGCTTGATTGTTATTGACAGTATAAGTCACT
1 TCTTATAATTAAACCCACAAAGTTCTTTGATAGTAGCTTGATTGTTATTGACAGTATAAGTCACT
13998533 ATTCAAGACAAAATGCAATATTAGTCAATGAGCAATATCATAAATTGTATAGCAACTATTCATGA
66 ATTCAAGACAAAATGCAATATTAGTCAATGAGCAATATCATAAATTGTATAGCAACTATTCATGA
13998598 TGTGCTAACAATTACTAAAAGATCCAAGTGCATTATCATAAACTCCTCTTTGGGCAGAGAATGCA
131 TGTGCTAACAATTACTAAAAGATCCAAGTGCATTATCATAAACTCCTCTTTGGGCAGAGAATGCA
13998663 ACATGTGATTAGGAACTTTTCACATAAAGCTAATATGAGAATGTCCTAGTTTTCAAAAACCTATC
196 ACATGTGATTAGGAACTTTTCACATAAAGCTAATATGAGAATGTCCTAGTTTTCAAAAACCTATC
*
13998728 CCCTTTAGGTAGATTGATTTTCTAGACCAATATACCCTCAACCATGATGCTTTATGATCCAAAAC
261 CCCTTTAGGTAGATTGATTTTCTAGACCAATACACCCTCAACCATGATGCTTTATGATCCAAAAC
*
13998793 AGATTACCCTACACATTAACTCCCTTTGGGCATGAAAAAACATAAGATAATTTAATAACCATCCC
326 AAATTACCCTACACATTAACTCCCTTTGGGCATGAAAAAACATAAGATAATTTAATAACCATCCC
*
13998858 ATAACTTTATAATGATAAAATATTCCATTAACTTCAATAAGTGAGCCACTTTGGAAACCAAACAC
391 ATAACTTTAGAATGATAAAATATTCCATTAACTTCAATAAGTGAGCCACTTTGGAAACCAAACAC
*
13998923 TTATATCAATTAATGAAAACTTTTTCAAATTGAAAATTTTCATTAATTGCCATAATTCTCAGTTT
456 TTATATCAATTAATGAAAACTTTTTCAAATTGAAAATTTTCATTAATTGCCAAAATTCTCAGTTT
13998988 GCATATTCAACCTTAATGTATGCAATGAACCATTCTAGCTGAGATACTAAACCTTGATTTATCTT
521 GCATATTCAACCTTAATGTATGCAATGAACCATTCTAGCTGAGATACTAAACCTTGATTTATCTT
13999053 ATTAGGTACTATAAACAATGTTTATTACATTTAAACTTGATTGTTA
586 ATTAGGTACTATAAACAATGTTTATTACATTTAAACTTGATTGTTA
13999099 TCTTATAATTAAACCCACAAAGTTCTTTGATAGTAGCTTGATTGTTATTGACAGTATAAGTCACT
1 TCTTATAATTAAACCCACAAAGTTCTTTGATAGTAGCTTGATTGTTATTGACAGTATAAGTCACT
13999164 ATTCAAGACAAAATGCAATATTAGTCAATGAGCAATATCATAAATTGTATAGCAACTATTCATGA
66 ATTCAAGACAAAATGCAATATTAGTCAATGAGCAATATCATAAATTGTATAGCAACTATTCATGA
* *
13999229 TGTGCTAACAATTACTAAAAGATCCAAGTGCATTATCATAAACTCCTCTTTGGGTAGAAAATGCA
131 TGTGCTAACAATTACTAAAAGATCCAAGTGCATTATCATAAACTCCTCTTTGGGCAGAGAATGCA
* * *
13999294 ACATGTGATTAGAAACTTTTCACATAAAGCTAATATGAGAATGTCTTAGTTTTCAAAAACTTATC
196 ACATGTGATTAGGAACTTTTCACATAAAGCTAATATGAGAATGTCCTAGTTTTCAAAAACCTATC
13999359 CCCTTTAGGTAGATTGATTTTCTAGACCAATACACCCTCAACCATGATGCTTTATGATCCAAAAC
261 CCCTTTAGGTAGATTGATTTTCTAGACCAATACACCCTCAACCATGATGCTTTATGATCCAAAAC
*
13999424 AAATTACCCTACACATTAACTCCCTTTGGGCATGAAAATACATAAGATAATTTAATAACCATCCC
326 AAATTACCCTACACATTAACTCCCTTTGGGCATGAAAAAACATAAGATAATTTAATAACCATCCC
*
13999489 ATAACTTTAGAATGTTAAAATATTCCATTAACTTCAATAAGTGAGCCACTTTGGAAACCAAACAC
391 ATAACTTTAGAATGATAAAATATTCCATTAACTTCAATAAGTGAGCCACTTTGGAAACCAAACAC
*
13999554 TTATATCAATTAATGAAAACTTTTTCAAATTGAAAATTTTCATTAATTGCCAAAATTCTCAATTT
456 TTATATCAATTAATGAAAACTTTTTCAAATTGAAAATTTTCATTAATTGCCAAAATTCTCAGTTT
*
13999619 GCATATTTAACCTTAATGTATGCAATGAACCATTCTAGCTGAGATACTAAACCTTGATTTATCTT
521 GCATATTCAACCTTAATGTATGCAATGAACCATTCTAGCTGAGATACTAAACCTTGATTTATCTT
13999684 ATTAGGTACTATAAACAATGTTTATTAC-TTTCAAACTTG
586 ATTAGGTACTATAAACAATGTTTATTACATTT-AAACTTG
13999723 GGTCTCGAAT
Statistics
Matches: 1851, Mismatches: 34, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
630 3 0.00
631 1357 0.73
632 491 0.27
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (631 bp):
TCTTATAATTAAACCCACAAAGTTCTTTGATAGTAGCTTGATTGTTATTGACAGTATAAGTCACT
ATTCAAGACAAAATGCAATATTAGTCAATGAGCAATATCATAAATTGTATAGCAACTATTCATGA
TGTGCTAACAATTACTAAAAGATCCAAGTGCATTATCATAAACTCCTCTTTGGGCAGAGAATGCA
ACATGTGATTAGGAACTTTTCACATAAAGCTAATATGAGAATGTCCTAGTTTTCAAAAACCTATC
CCCTTTAGGTAGATTGATTTTCTAGACCAATACACCCTCAACCATGATGCTTTATGATCCAAAAC
AAATTACCCTACACATTAACTCCCTTTGGGCATGAAAAAACATAAGATAATTTAATAACCATCCC
ATAACTTTAGAATGATAAAATATTCCATTAACTTCAATAAGTGAGCCACTTTGGAAACCAAACAC
TTATATCAATTAATGAAAACTTTTTCAAATTGAAAATTTTCATTAATTGCCAAAATTCTCAGTTT
GCATATTCAACCTTAATGTATGCAATGAACCATTCTAGCTGAGATACTAAACCTTGATTTATCTT
ATTAGGTACTATAAACAATGTTTATTACATTTAAACTTGATTGTTA
Found at i:14001155 original size:34 final size:34
Alignment explanation
Indices: 14001098--14001199 Score: 168
Period size: 34 Copynumber: 3.0 Consensus size: 34
14001088 TTATTTTCCT
14001098 TTATACTTTATTTGTTCAAACCAAAGTTTATAAGG
1 TTATACTTTATTT-TTCAAACCAAAGTTTATAAGG
*
14001133 TTATACTTTATTTTTCAAACCAAAGTTTATAATG
1 TTATACTTTATTTTTCAAACCAAAGTTTATAAGG
* *
14001167 TTATACTTTAATTTTCAAACCAAAGTTTGTAAG
1 TTATACTTTATTTTTCAAACCAAAGTTTATAAG
14001200 TACTTCAATC
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
34 50 0.79
35 13 0.21
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (34 bp):
TTATACTTTATTTTTCAAACCAAAGTTTATAAGG
Found at i:14002711 original size:3 final size:3
Alignment explanation
Indices: 14002703--14002765 Score: 108
Period size: 3 Copynumber: 21.0 Consensus size: 3
14002693 TTGATTTTGT
*
14002703 TTA TTA TTA TTA TTA TTA TTA TTA TTT TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
14002751 GTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
14002766 AATCTAATGT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14003285 original size:18 final size:17
Alignment explanation
Indices: 14003245--14003393 Score: 83
Period size: 17 Copynumber: 8.6 Consensus size: 17
14003235 TTTTTGTATC
*
14003245 TTATTTATT--TATTTA
1 TTATTTATTAATATATA
14003260 TTATTTATTAATATATA
1 TTATTTATTAATATATA
14003277 TTCATTTATTAATATATA
1 TT-ATTTATTAATATATA
*
14003295 TTA-TTATT--TATCTA
1 TTATTTATTAATATATA
* * *
14003309 TTAATGTATATAAATTTTTA
1 TT-AT-T-TATTAATATATA
* * * *
14003329 TTATTAACTATTATCTA
1 TTATTTATTAATATATA
*
14003346 TTATTTATCTATTAATATA
1 TTATTTAT-TAAT-ATATA
* *
14003365 TATATTTTATTGATATATT
1 T-TA-TTTATTAATATATA
14003384 TTATTTATTA
1 TTATTTATTA
14003394 TTTATCTATT
Statistics
Matches: 103, Mismatches: 18, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
14 7 0.07
15 10 0.10
16 5 0.05
17 27 0.26
18 27 0.26
19 12 0.12
20 10 0.10
21 5 0.05
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (17 bp):
TTATTTATTAATATATA
Found at i:14003382 original size:13 final size:13
Alignment explanation
Indices: 14003364--14003388 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14003354 CTATTAATAT
14003364 ATATATTTTATTG
1 ATATATTTTATTG
14003377 ATATATTTTATT
1 ATATATTTTATT
14003389 TATTATTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
ATATATTTTATTG
Found at i:14006980 original size:207 final size:206
Alignment explanation
Indices: 14006577--14007123 Score: 643
Period size: 207 Copynumber: 2.6 Consensus size: 206
14006567 AAAGGGATAG
** * * * *
14006577 AAAACCATATGTCACAAGAAAATTAAAAGTAAAAAATATAAATGTTACAAAACCAAAGATTCGAT
1 AAAACCATAAATCACAAGAAAATCAAAAGTAAAAAATATAAATGTTACAAAATCAAAGGTTTGAT
* * * *
14006642 TAATAAATTTTAACAGATAATGGTTTTAGAAAAAATGAATACAAGAAAATAAAAAATCGATAATT
66 TAATAAATTTTAACAAATAATGG-TTTA-AAAAAATGAATACAAGAAAATCAAAAGTCAATAATT
* * *
14006707 AAAGTAATATGACAAATAAGAATTGGAAGAAAAAAGTGTAAAAGAGACATGAAAGAAACTCATAT
129 AAAGTAATATGACAAACAAGAATTGGAAGAAAAAAGAGTAAAAGAGACATAAAAGAAACTCATAT
* *
14006772 AACTCTCA-CTGTT
194 AACTCGCATC-CTT
* * * *
14006785 AAAACCATAAATCACAATAAACTCAAAATTAAAAAATATAAATGTTACAAAATCGAAGGTTTGAT
1 AAAACCATAAATCACAAGAAAATCAAAAGTAAAAAATATAAATGTTACAAAATCAAAGGTTTGAT
14006850 TAATAAATTTTAACAAATAATGGTTTAAATAAAATGAATACAAGAAAATCAAAAGTCAATAATTA
66 TAATAAATTTTAACAAATAATGGTTTAAA-AAAATGAATACAAGAAAATCAAAAGTCAATAATTA
* * * * *
14006915 AAGTAATATGACAAACAATAATT-GATAGAAAAAAGAGTAACATATACATAAAAGACACTCATAT
130 AAGTAATATGACAAACAAGAATTGGA-AGAAAAAAGAGTAAAAGAGACATAAAAGAAACTCATAT
14006979 AACTCGCATCCTT
194 AACTCGCATCCTT
** * *
14006992 AAAAGAGATAGAAGAGTCACAAGAAAATCAAAAGTCAAAAATATAAATGTTACAAAATTAAAAGG
1 AAAA-CCAT--AA-A-TCACAAGAAAATCAAAAGTAAAAAATATAAATGTTACAAAA-TCAAAGG
* * * * * * *
14007057 -TTAATCAATATATTTTAA-AAACAATAGTTTTTAAAAAATGAATACAAAAAAATCAAAAGTCAA
60 TTTGATTAATAAATTTTAACAAATAAT-GGTTTAAAAAAATGAATACAAGAAAATCAAAAGTCAA
14007120 TAAT
124 TAAT
14007124 CCAAATAAAT
Statistics
Matches: 290, Mismatches: 39, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
206 4 0.01
207 102 0.35
208 80 0.28
210 2 0.01
211 39 0.13
212 58 0.20
213 5 0.02
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.25
Consensus pattern (206 bp):
AAAACCATAAATCACAAGAAAATCAAAAGTAAAAAATATAAATGTTACAAAATCAAAGGTTTGAT
TAATAAATTTTAACAAATAATGGTTTAAAAAAATGAATACAAGAAAATCAAAAGTCAATAATTAA
AGTAATATGACAAACAAGAATTGGAAGAAAAAAGAGTAAAAGAGACATAAAAGAAACTCATATAA
CTCGCATCCTT
Found at i:14007369 original size:166 final size:167
Alignment explanation
Indices: 14007086--14007418 Score: 510
Period size: 166 Copynumber: 2.0 Consensus size: 167
14007076 AACAATAGTT
*
14007086 TTTAAAAAATGAATACAAAAAAATCAAAAGTCAATAATCCAAATAAATATTAGACATTCAAAAGT
1 TTTAAAAAATGAATACAAAAAAATCAAAAGTCAATAATCCAAATAAATATTAGACAATCAAAAGT
* * *
14007151 TTATTTTGTTTTATGCAATAAAATTAAGATGTATGAATTTATAATATATGTAAAAAAGACGTGGC
66 TTATTGTGTTTTATGCAACAAAATTAAGATGTATAAATTTATAATATATGTAAAAAAGACGTGGC
*
14007216 -CTTATTACAACATATTTGAG-TTATATATATAATGG
131 ACTTATTACAAAATATTTGAGTTTATATATATAATGG
*
14007251 TTTAAAAAACTGAATACAATAAAATCAAAAGTCAATAATCCAAATAAATATTAGACAATC-AAAG
1 TTTAAAAAA-TGAATACAAAAAAATCAAAAGTCAATAATCCAAATAAATATTAGACAATCAAAAG
* * *
14007315 ATTTATTGTGTTTTATGTAACAAAATTAAGATGTATAAATTTATAATTTATGTAAAAAAGACTTG
65 -TTTATTGTGTTTTATGCAACAAAATTAAGATGTATAAATTTATAATATATGTAAAAAAGACGTG
* * *
14007380 GCATTTATTATAAAATATTTGAGTTTTATGTATATAATG
129 GCACTTATTACAAAATATTTGAG-TTTATATATATAATG
14007419 ATTATCAATA
Statistics
Matches: 151, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
165 13 0.09
166 108 0.72
167 17 0.11
169 13 0.09
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.36
Consensus pattern (167 bp):
TTTAAAAAATGAATACAAAAAAATCAAAAGTCAATAATCCAAATAAATATTAGACAATCAAAAGT
TTATTGTGTTTTATGCAACAAAATTAAGATGTATAAATTTATAATATATGTAAAAAAGACGTGGC
ACTTATTACAAAATATTTGAGTTTATATATATAATGG
Found at i:14007515 original size:22 final size:22
Alignment explanation
Indices: 14007456--14007604 Score: 109
Period size: 22 Copynumber: 6.8 Consensus size: 22
14007446 CAATTATCAA
* * *
14007456 TAGTAATTCATTCATAAATTAG
1 TAGTAAATCATTGATAATTTAG
* * **
14007478 TAGTATACCAAAGATAATTTAG
1 TAGTAAATCATTGATAATTTAG
* *
14007500 CAGTAAATCATTGATAATTCAG
1 TAGTAAATCATTGATAATTTAG
* * *
14007522 TAGTAAATAATTGACAACTTAG
1 TAGTAAATCATTGATAATTTAG
* ** *
14007544 TAGTAAATCAATGATAACATAA
1 TAGTAAATCATTGATAATTTAG
* * *
14007566 TAGTAAATCAATAATAATTTAA
1 TAGTAAATCATTGATAATTTAG
* *
14007588 TTGTCAATCATTGATAA
1 TAGTAAATCATTGATAA
14007605 CTTTCTTTTG
Statistics
Matches: 97, Mismatches: 30, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 97 1.00
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.34
Consensus pattern (22 bp):
TAGTAAATCATTGATAATTTAG
Found at i:14007999 original size:20 final size:20
Alignment explanation
Indices: 14007947--14008004 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
14007937 CAATGGTTAA
*
14007947 AAAATATATATCATAAGCTACC
1 AAAAT-TATATCA-AAGATACC
*
14007969 -AAACTACTATCAAAGATACC
1 AAAATTA-TATCAAAGATACC
14007989 AAAATTATATCGAAAG
1 AAAATTATATC-AAAG
14008005 TTATTAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
20 13 0.43
21 17 0.57
ACGTcount: A:0.52, C:0.17, G:0.07, T:0.24
Consensus pattern (20 bp):
AAAATTATATCAAAGATACC
Found at i:14017188 original size:25 final size:25
Alignment explanation
Indices: 14017141--14017188 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
14017131 GTGATTGACT
*
14017141 GAAAAGAGAAATAGAAAGGGAAAAA
1 GAAAAGAGAAATAGAAAGAGAAAAA
*
14017166 GAAAAGAGGAAA-AGAGAGAGAAA
1 GAAAAGA-GAAATAGAAAGAGAAA
14017189 TAGTATCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (25 bp):
GAAAAGAGAAATAGAAAGAGAAAAA
Found at i:14022535 original size:8 final size:8
Alignment explanation
Indices: 14022510--14022553 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
14022500 TAACTGTTTA
14022510 ATATATTT
1 ATATATTT
*
14022518 ATTTTATTT
1 A-TATATTT
14022527 ATATATTT
1 ATATATTT
* *
14022535 ACATATTA
1 ATATATTT
14022543 ATATATTT
1 ATATATTT
14022551 ATA
1 ATA
14022554 ATTGTAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (8 bp):
ATATATTT
Found at i:14024870 original size:2 final size:2
Alignment explanation
Indices: 14024863--14024895 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
14024853 CCACAAAAAG
*
14024863 AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14024896 AACATAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:14026932 original size:10 final size:10
Alignment explanation
Indices: 14026919--14027004 Score: 86
Period size: 10 Copynumber: 8.7 Consensus size: 10
14026909 ACAAAAGTAA
*
14026919 AAAAAATTCT
1 AAAAAATTAT
*
14026929 -AAAAGTTAT
1 AAAAAATTAT
*
14026938 AAAAAATTCT
1 AAAAAATTAT
*
14026948 GAAAAAATTTT
1 -AAAAAATTAT
*
14026959 AAAAAATTTT
1 AAAAAATTAT
14026969 AAAAAATTAT
1 AAAAAATTAT
*
14026979 TAAAAATTAT
1 AAAAAATTAT
*
14026989 -AAAATTTAT
1 AAAAAATTAT
14026998 AAAAAAT
1 AAAAAAT
14027005 ATTAAAAAGA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
9 15 0.23
10 40 0.62
11 9 0.14
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:14026941 original size:19 final size:20
Alignment explanation
Indices: 14026919--14027004 Score: 95
Period size: 19 Copynumber: 4.3 Consensus size: 20
14026909 ACAAAAGTAA
*
14026919 AAAAAATTCT-AAAAGTTAT
1 AAAAAATTCTAAAAAATTAT
*
14026938 AAAAAATTCTGAAAAAATTTT
1 AAAAAATTCT-AAAAAATTAT
*
14026959 AAAAAATTTTAAAAAATTAT
1 AAAAAATTCTAAAAAATTAT
* * *
14026979 TAAAAATTAT-AAAATTTAT
1 AAAAAATTCTAAAAAATTAT
14026998 AAAAAAT
1 AAAAAAT
14027005 ATTAAAAAGA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
19 24 0.42
20 17 0.30
21 16 0.28
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (20 bp):
AAAAAATTCTAAAAAATTAT
Found at i:14027003 original size:11 final size:11
Alignment explanation
Indices: 14026929--14027022 Score: 69
Period size: 10 Copynumber: 9.1 Consensus size: 11
14026919 AAAAAATTCT
*
14026929 AAAAGTTATAA
1 AAAATTTATAA
*
14026940 AAAATTCT-GAA
1 AAAATT-TATAA
14026951 AAAATTT-TAA
1 AAAATTTATAA
14026961 AAAATTT-TAA
1 AAAATTTATAA
*
14026971 AAAA-TTATTA
1 AAAATTTATAA
14026981 AAAA-TTAT--
1 AAAATTTATAA
14026989 AAAATTTATAA
1 AAAATTTATAA
14027000 AAAATATTA-AA
1 AAAAT-TTATAA
* *
14027011 AAGATTTTTAA
1 AAAATTTATAA
14027022 A
1 A
14027023 TTTTTTTAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
8 4 0.06
9 6 0.09
10 29 0.41
11 27 0.39
12 4 0.06
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (11 bp):
AAAATTTATAA
Found at i:14027028 original size:10 final size:10
Alignment explanation
Indices: 14027015--14027073 Score: 55
Period size: 10 Copynumber: 5.8 Consensus size: 10
14027005 ATTAAAAAGA
14027015 TTTTTAAATT
1 TTTTTAAATT
*
14027025 TTTTTAAAATA
1 TTTTT-AAATT
* *
14027036 TTCTAAAATT
1 TTTTTAAATT
14027046 TTTTTAAATT
1 TTTTTAAATT
* **
14027056 TCTCAAAATT
1 TTTTTAAATT
14027066 TTTTTAAA
1 TTTTTAAA
14027074 AATTTAAAAG
Statistics
Matches: 36, Mismatches: 12, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
10 29 0.81
11 7 0.19
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (10 bp):
TTTTTAAATT
Found at i:14027044 original size:21 final size:21
Alignment explanation
Indices: 14027020--14027087 Score: 90
Period size: 20 Copynumber: 3.4 Consensus size: 21
14027010 AAAGATTTTT
14027020 AAATTTTTTTAAAATATTCTA
1 AAATTTTTTTAAAATATTCTA
14027041 AAATTTTTTT-AAAT-TTCTCA
1 AAATTTTTTTAAAATATTCT-A
14027061 AAATTTTTTTAAAA-ATT-TA
1 AAATTTTTTTAAAATATTCTA
*
14027080 AAAGTTTT
1 AAATTTTT
14027088 ATTATTTTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
19 12 0.28
20 16 0.37
21 15 0.35
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (21 bp):
AAATTTTTTTAAAATATTCTA
Found at i:14027194 original size:10 final size:9
Alignment explanation
Indices: 14027159--14027313 Score: 59
Period size: 10 Copynumber: 16.4 Consensus size: 9
14027149 TCCTTAATTC
*
14027159 TTTTGGAAT
1 TTTTAGAAT
* *
14027168 TTTTAAAAAA
1 TTTT-AGAAT
14027178 TTTTAGAAT
1 TTTTAGAAT
14027187 TTTCTAGAAT
1 TTT-TAGAAT
14027197 TTTTAGAAAAT
1 TTTTAG--AAT
**
14027208 TTTTA-TTT
1 TTTTAGAAT
*
14027216 TTTTAAATAT
1 TTTTAGA-AT
14027226 TTTTAGAAT
1 TTTTAGAAT
*
14027235 TTTTGATAAT
1 TTTT-AGAAT
*
14027245 TTTCA-AATTT
1 TTTTAGAA--T
14027255 TTTTA-AAT
1 TTTTAGAAT
* *
14027263 TTTCAAAAAT
1 TTT-TAGAAT
14027273 TGTTTA-AAT
1 T-TTTAGAAT
14027282 TTTTA-AAT
1 TTTTAGAAT
*
14027290 TTATTAAAAT
1 TT-TTAGAAT
*
14027300 TTATTAAAAT
1 TT-TTAGAAT
14027310 TTTT
1 TTTT
14027314 TTATCTTTTT
Statistics
Matches: 117, Mismatches: 15, Indels: 28
0.73 0.09 0.17
Matches are distributed among these distances:
8 21 0.18
9 30 0.26
10 56 0.48
11 10 0.09
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (9 bp):
TTTTAGAAT
Found at i:14027442 original size:9 final size:9
Alignment explanation
Indices: 14027165--14027535 Score: 97
Period size: 9 Copynumber: 38.2 Consensus size: 9
14027155 ATTCTTTTGG
14027165 AATTTTTAAA
1 AATTTTT-AA
* *
14027175 AAATTTTAG
1 AATTTTTAA
*
14027184 AATTTTCTAG
1 AATTTT-TAA
14027194 AATTTTTAGAA
1 AATTTTT--AA
14027205 AATTTTT-A
1 AATTTTTAA
**
14027213 TTTTTTTAA
1 AATTTTTAA
*
14027222 ATATTTTTAG
1 A-ATTTTTAA
*
14027232 AATTTTTGAT
1 AATTTTT-AA
*
14027242 AATTTTCAA
1 AATTTTTAA
* *
14027251 ATTTTTTTA
1 AATTTTTAA
*
14027260 AATTTTCAAA
1 AATTTT-TAA
14027270 AATTGTTT-A
1 AATT-TTTAA
14027279 AATTTTT-A
1 AATTTTTAA
14027287 AATTTATTAA
1 AATTT-TTAA
14027297 AATTTATTAA
1 AATTT-TTAA
*
14027307 AATTTTTTTA
1 AA-TTTTTAA
**
14027317 TCTTTTTAA
1 AATTTTTAA
*
14027326 GAATTTTT-T
1 -AATTTTTAA
14027335 AATTGTTT-A
1 AATT-TTTAA
** **
14027344 TTTATTTTGG
1 AAT-TTTTAA
14027354 AATTTTCTAAAA
1 AATTTT-T--AA
*
14027366 AATTTTTTA
1 AATTTTTAA
*
14027375 AATATTTTAT
1 AAT-TTTTAA
14027385 AA-TTTTAA
1 AATTTTTAA
*
14027393 GAACTTTTGAA
1 -AA-TTTTTAA
*
14027404 AAATTTTAA
1 AATTTTTAA
**
14027413 TAATTTTTTT
1 -AATTTTTAA
*
14027423 AATTTTAAA
1 AATTTTTAA
14027432 AATTTTTAAAA
1 AATTTTT--AA
14027443 AGATTATTTAA
1 A-ATT-TTTAA
14027454 GAATTTTTAGAA
1 -AATTTTT--AA
14027466 AATTTTTAA
1 AATTTTTAA
*
14027475 ACTTCTTTAGCA
1 AATT-TTTA--A
** *
14027487 GTTTTTTTA
1 AATTTTTAA
*
14027496 ACTTTTTAA
1 AATTTTTAA
14027505 AATTTTTTGAA
1 AA-TTTTT-AA
* * *
14027516 CATTGTTAT
1 AATTTTTAA
14027525 AATTTTTAA
1 AATTTTTAA
14027534 AA
1 AA
14027536 AAATTTTAAT
Statistics
Matches: 264, Mismatches: 62, Indels: 71
0.66 0.16 0.18
Matches are distributed among these distances:
8 24 0.09
9 94 0.36
10 88 0.33
11 40 0.15
12 15 0.06
13 3 0.01
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (9 bp):
AATTTTTAA
Found at i:14027471 original size:11 final size:10
Alignment explanation
Indices: 14027387--14027475 Score: 58
Period size: 11 Copynumber: 8.7 Consensus size: 10
14027377 TATTTTATAA
*
14027387 TTTTAAGAACT
1 TTTTAA-AAAT
*
14027398 TTTGAAAAA-
1 TTTTAAAAAT
*
14027407 TTTTAATAAT
1 TTTTAAAAAT
**
14027417 TTTT-TTAA-
1 TTTTAAAAAT
14027425 TTTTAAAAAT
1 TTTTAAAAAT
14027435 TTTTAAAAAGAT
1 TTTT-AAAA-AT
*
14027447 TATTTAAGAAT
1 T-TTTAAAAAT
14027458 TTTTAGAAAAT
1 TTTTA-AAAAT
14027469 TTTTAAA
1 TTTTAAA
14027476 CTTCTTTAGC
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
8 4 0.06
9 12 0.19
10 16 0.26
11 21 0.34
12 6 0.10
13 3 0.05
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (10 bp):
TTTTAAAAAT
Found at i:14027510 original size:19 final size:20
Alignment explanation
Indices: 14027488--14027531 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14027478 TCTTTAGCAG
* *
14027488 TTTTTTTAAC-TTTTTAAAA
1 TTTTTTGAACATTGTTAAAA
*
14027507 TTTTTTGAACATTGTTATAA
1 TTTTTTGAACATTGTTAAAA
14027527 TTTTT
1 TTTTT
14027532 AAAAAAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTTTTGAACATTGTTAAAA
Found at i:14028425 original size:15 final size:16
Alignment explanation
Indices: 14028397--14028426 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14028387 GGAAATTAAA
14028397 ATTTTAACATTGTAAT
1 ATTTTAACATTGTAAT
14028413 ATTTTAA-ATTGTAA
1 ATTTTAACATTGTAA
14028427 ATAGGTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (16 bp):
ATTTTAACATTGTAAT
Found at i:14028429 original size:16 final size:17
Alignment explanation
Indices: 14028393--14028429 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
14028383 ATATGGAAAT
14028393 TAAA-ATTTTAACATTG
1 TAAATATTTTAACATTG
14028409 T-AATATTTTAA-ATTG
1 TAAATATTTTAACATTG
14028424 TAAATA
1 TAAATA
14028430 GGTTTGTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (17 bp):
TAAATATTTTAACATTG
Found at i:14028482 original size:14 final size:13
Alignment explanation
Indices: 14028446--14028507 Score: 72
Period size: 13 Copynumber: 4.8 Consensus size: 13
14028436 TGTAAATTTG
*
14028446 TTTTGTACAATTA
1 TTTTGTATAATTA
* *
14028459 CTTTGCATAATTA
1 TTTTGTATAATTA
14028472 TTTTTGTATAATTA
1 -TTTTGTATAATTA
*
14028486 TTTT-TGTAATTA
1 TTTTGTATAATTA
14028498 TTTTGTATAA
1 TTTTGTATAA
14028508 CTAATTTGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
12 11 0.28
13 18 0.45
14 11 0.28
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.58
Consensus pattern (13 bp):
TTTTGTATAATTA
Found at i:14028497 original size:12 final size:13
Alignment explanation
Indices: 14028460--14028501 Score: 59
Period size: 14 Copynumber: 3.2 Consensus size: 13
14028450 GTACAATTAC
14028460 TTTGCATAATTATT
1 TTTG-ATAATTATT
14028474 TTTGTATAATTATT
1 TTTG-ATAATTATT
14028488 TTTG-TAATTATT
1 TTTGATAATTATT
14028500 TT
1 TT
14028502 GTATAACTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 10 0.37
14 17 0.63
ACGTcount: A:0.26, C:0.02, G:0.07, T:0.64
Consensus pattern (13 bp):
TTTGATAATTATT
Found at i:14029383 original size:24 final size:23
Alignment explanation
Indices: 14029351--14029438 Score: 68
Period size: 25 Copynumber: 3.4 Consensus size: 23
14029341 TATAAAAATA
*
14029351 TAAAATATATATTTTTTATTTTAT
1 TAAATTATATATTTTTTATTTT-T
**
14029375 TAAATTATATATAATAATTATTAAAATTT
1 TAAATTATATAT--T--TT-TT-ATTTTT
14029404 TAAATTATATTATTTTTATATTTTT
1 TAAATTATA-TATTTTT-TATTTTT
14029429 TAAATTATAT
1 TAAATTATAT
14029439 TTAAATTGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
24 12 0.24
25 14 0.27
26 4 0.08
28 3 0.06
29 12 0.24
30 6 0.12
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TAAATTATATATTTTTTATTTTT
Found at i:14029438 original size:14 final size:14
Alignment explanation
Indices: 14029401--14029440 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
14029391 ATTATTAAAA
14029401 TTTTAAATTATATT
1 TTTTAAATTATATT
*
14029415 ATTT---TTATATT
1 TTTTAAATTATATT
14029426 TTTTAAATTATATT
1 TTTTAAATTATATT
14029440 T
1 T
14029441 AAATTGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 6
0.72 0.07 0.21
Matches are distributed among these distances:
11 10 0.48
14 11 0.52
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTAAATTATATT
Found at i:14031268 original size:25 final size:25
Alignment explanation
Indices: 14031212--14031270 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
14031202 AATATCATAG
*
14031212 AATAA-TTTTTTAAAAAATAAATAT
1 AATAAGTTATTTAAAAAATAAATAT
*
14031236 AATTAAGTTATTTAAAAATTAAAATAT
1 AA-TAAGTTATTTAAAAAAT-AAATAT
14031263 AA-AAGTTA
1 AATAAGTTA
14031271 AATGAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 2 0.07
25 9 0.30
26 11 0.37
27 8 0.27
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (25 bp):
AATAAGTTATTTAAAAAATAAATAT
Found at i:14032603 original size:16 final size:16
Alignment explanation
Indices: 14032550--14032606 Score: 64
Period size: 15 Copynumber: 3.7 Consensus size: 16
14032540 GCATACCGAA
* *
14032550 TTTGGGGTTTT-AGAA
1 TTTGGGATTTTAAGAG
*
14032565 TTTTGGATTTTAA-AG
1 TTTGGGATTTTAAGAG
*
14032580 TTTTGGATTTTAAGAG
1 TTTGGGATTTTAAGAG
14032596 TTTGGGATTTT
1 TTTGGGATTTT
14032607 GGATTTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
15 23 0.64
16 13 0.36
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (16 bp):
TTTGGGATTTTAAGAG
Found at i:14032689 original size:22 final size:22
Alignment explanation
Indices: 14032637--14032693 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
14032627 AAACTTGGAC
*
14032637 ATTTTGGTTTTGGATTTTAAGG
1 ATTTTGATTTTGGATTTTAAGG
* **
14032659 -TTTAGGATTTTGGATTTTTTGG
1 ATTT-TGATTTTGGATTTTAAGG
14032681 ATTTTGATTTTGG
1 ATTTTGATTTTGG
14032694 GGATTAAGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 3 0.11
22 22 0.79
23 3 0.11
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (22 bp):
ATTTTGATTTTGGATTTTAAGG
Found at i:14032691 original size:15 final size:15
Alignment explanation
Indices: 14032644--14032691 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
14032634 GACATTTTGG
* **
14032644 TTTTGGATTTTAAGG
1 TTTTGGATTTTGATT
*
14032659 TTTAGGATTTTGGATT
1 TTTTGGATTTT-GATT
14032675 TTTTGGATTTTGATT
1 TTTTGGATTTTGATT
14032690 TT
1 TT
14032692 GGGGATTAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 16 0.59
16 11 0.41
ACGTcount: A:0.17, C:0.00, G:0.23, T:0.60
Consensus pattern (15 bp):
TTTTGGATTTTGATT
Found at i:14033196 original size:36 final size:37
Alignment explanation
Indices: 14033099--14033209 Score: 109
Period size: 36 Copynumber: 3.1 Consensus size: 37
14033089 AGAAAACGAC
* * * *
14033099 CGGGACGACATCGCAAGTCGAAAAATAAAAAATTGAC
1 CGGGACGACACCGCAAGTCGAAAATTAAAGAATTGAT
* * * **
14033136 CGAGACAACACTGTGAGT-GAAAATTAAAGAATTGAT
1 CGGGACGACACCGCAAGTCGAAAATTAAAGAATTGAT
* *
14033172 CGGGACGACACCGCAAGTCG-AAATTAAAGCATCGAT
1 CGGGACGACACCGCAAGTCGAAAATTAAAGAATTGAT
14033208 CG
1 CG
14033210 AAATTAAAGA
Statistics
Matches: 57, Mismatches: 16, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
36 44 0.77
37 13 0.23
ACGTcount: A:0.41, C:0.19, G:0.23, T:0.16
Consensus pattern (37 bp):
CGGGACGACACCGCAAGTCGAAAATTAAAGAATTGAT
Found at i:14033212 original size:18 final size:18
Alignment explanation
Indices: 14033189--14033227 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
14033179 ACACCGCAAG
*
14033189 TCGAAATTAAAGCATCGA
1 TCGAAATTAAAGAATCGA
14033207 TCGAAATTAAAGAATCGA
1 TCGAAATTAAAGAATCGA
14033225 TCG
1 TCG
14033228 CTATAACATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.23
Consensus pattern (18 bp):
TCGAAATTAAAGAATCGA
Found at i:14033272 original size:36 final size:36
Alignment explanation
Indices: 14033206--14033287 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 36
14033196 TAAAGCATCG
* * *
14033206 ATCGAAATTAAAGAATCGATCGCTATAACATCGTGA
1 ATCGAAATTAAAGAATCAATCGCGACAACATCGTGA
* * *
14033242 ATCGAAATTAAAGAATCAATTGGGACAACATTGTGA
1 ATCGAAATTAAAGAATCAATCGCGACAACATCGTGA
*
14033278 ATAGAAATTA
1 ATCGAAATTA
14033288 TGCCCAGAGG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.26
Consensus pattern (36 bp):
ATCGAAATTAAAGAATCAATCGCGACAACATCGTGA
Found at i:14033596 original size:22 final size:23
Alignment explanation
Indices: 14033568--14033616 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
14033558 CTGTGAATCG
**
14033568 AAATAATGCATGGAGGTCTTA-A
1 AAATAATGCACAGAGGTCTTACA
*
14033590 AAATAATGCCCAGAGGTCTTACA
1 AAATAATGCACAGAGGTCTTACA
14033613 AAAT
1 AAAT
14033617 CAACTAGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.24
Consensus pattern (23 bp):
AAATAATGCACAGAGGTCTTACA
Found at i:14033706 original size:22 final size:22
Alignment explanation
Indices: 14033678--14033720 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14033668 CCGCGAATTG
*
14033678 AAATTATGCCCAGAAGTCTTAT
1 AAATTATACCCAGAAGTCTTAT
* *
14033700 AAATTATACCCGGAGGTCTTA
1 AAATTATACCCAGAAGTCTTA
14033721 CAAAATCGAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (22 bp):
AAATTATACCCAGAAGTCTTAT
Found at i:14033805 original size:220 final size:220
Alignment explanation
Indices: 14033394--14033813 Score: 576
Period size: 220 Copynumber: 1.9 Consensus size: 220
14033384 GGTTTTATAG
* ** *
14033394 AATCAACTGGAATAACACCGCAAGTTGAAAGATAAGGAATCGATCGGGATAATACCACGAATTGA
1 AATCAACTAGAATAACACCGCAAGTCAAAAGATAAGGAATCGATCGGGATAACACCACGAATTGA
* * * *
14033459 AAATTATGCCTGAAGATCTTAGAAATCATGCTCGAAGGTCTTACAGAATCGACTGGGATAACACC
66 AAATTATGCCAGAAGATCTTAGAAATCATACCCGAAGGTCTTACAAAATCGACTGGGATAACACC
*** * *
14033524 GTAAGTCAAAATTAAAGAATCGATCGGGATAACACTGTGAATCGAAATAATGCATGGAGGTCTTA
131 GTAAGTCAAAATTAAAGAATCGATCGGGATAACACCACGAATCAAAATAATGCACGGAGGTCTTA
14033589 AAAATAATGCCCAGAGGTCTTACAA
196 AAAATAATGCCCAGAGGTCTTACAA
* *
14033614 AATCAACTAGAATAACATCGCAAGTCAAAAGATAAGGAATCGATCGGGATAACACCGCGAATTG-
1 AATCAACTAGAATAACACCGCAAGTCAAAAGATAAGGAATCGATCGGGATAACACCACGAATTGA
* * *
14033678 AAATTATGCCCAGAAG-TCTTATAAATTATACCCGGAGGTCTTACAAAATCGACTGGGATAACAC
66 AAATTATG-CCAGAAGATCTTAGAAATCATACCCGAAGGTCTTACAAAATCGACTGGGATAACAC
* * * * *
14033742 CGTAAGTCGAAAGA-TAAGGAATCGATCGGGATAATACCACGATTCAAAATTATGCCCGGAGGTC
130 CGTAAGTC-AAA-ATTAAAGAATCGATCGGGATAACACCACGAATCAAAATAATGCACGGAGGTC
*
14033806 TTAGAAAT
193 TTAAAAAT
14033814 CACGTTGGGA
Statistics
Matches: 173, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
219 58 0.34
220 114 0.66
221 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.22
Consensus pattern (220 bp):
AATCAACTAGAATAACACCGCAAGTCAAAAGATAAGGAATCGATCGGGATAACACCACGAATTGA
AAATTATGCCAGAAGATCTTAGAAATCATACCCGAAGGTCTTACAAAATCGACTGGGATAACACC
GTAAGTCAAAATTAAAGAATCGATCGGGATAACACCACGAATCAAAATAATGCACGGAGGTCTTA
AAAATAATGCCCAGAGGTCTTACAA
Found at i:14033830 original size:110 final size:111
Alignment explanation
Indices: 14033394--14033815 Score: 467
Period size: 110 Copynumber: 3.8 Consensus size: 111
14033384 GGTTTTATAG
* * *
14033394 AATCAACTGGAATAACACCGCAAGTTGAAAGATAAGGAATCGATCGGGATAATACCACGAATTGA
1 AATCAACTGGAATAACACCGCAAGTCGAAAGATAAGGAATCGATCGGGATAACACCACGAATTCA
* * * * * *
14033459 AAATTATGCCTGAAGATCTTAGAAATCATGCTCGAAGGTCTTACAG
66 AAATTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAA
* * * * ***
14033505 AATCGACTGGGATAACACCGTAAGTC-AAA-ATTAAAGAATCGATCGGGATAACACTGTGAA-TC
1 AATCAACTGGAATAACACCGCAAGTCGAAAGA-TAAGGAATCGATCGGGATAACACCACGAATTC
* * ** * * *
14033567 GAAATAATGCATGGAGGTCTTAAAAATAATGCCCAGAGGTCTTACAA
65 AAAATTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAA
* * * * *
14033614 AATCAACTAGAATAACATCGCAAGTCAAAAGATAAGGAATCGATCGGGATAACACCGCGAATT-G
1 AATCAACTGGAATAACACCGCAAGTCGAAAGATAAGGAATCGATCGGGATAACACCACGAATTCA
* * * * *
14033678 AAATTATGCCCAGAAGTCTTATAAATTATACCCGGAGGTCTTACAA
66 AAATTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAA
* * * *
14033724 AATCGACTGGGATAACACCGTAAGTCGAAAGATAAGGAATCGATCGGGATAATACCACG-ATTCA
1 AATCAACTGGAATAACACCGCAAGTCGAAAGATAAGGAATCGATCGGGATAACACCACGAATTCA
14033788 AAATTATGCCCGGAGGTCTTAGAAATCA
66 AAATTATGCCCGGAGGTCTTAGAAATCA
14033816 CGTTGGGAGA
Statistics
Matches: 255, Mismatches: 51, Indels: 11
0.80 0.16 0.03
Matches are distributed among these distances:
109 62 0.24
110 169 0.66
111 24 0.09
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.22
Consensus pattern (111 bp):
AATCAACTGGAATAACACCGCAAGTCGAAAGATAAGGAATCGATCGGGATAACACCACGAATTCA
AAATTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAA
Found at i:14034168 original size:41 final size:41
Alignment explanation
Indices: 14034107--14034211 Score: 124
Period size: 41 Copynumber: 2.6 Consensus size: 41
14034097 TTCTGAAGAA
*
14034107 GGTTCCT-TCTAAACAAAGGCTTTGAAATCTCAATT-AAATTT
1 GGTTCCTCT-TAAACAAAGGCTTTGAAATCTCAATTGAAA-AT
* **
14034148 GGTTCCTCTTAAACATAGGCTTTGAAATCTTTATTGAAAAT
1 GGTTCCTCTTAAACAAAGGCTTTGAAATCTCAATTGAAAAT
* *
14034189 GGTTCCTCTTGAACAAAGACTTT
1 GGTTCCTCTTAAACAAAGGCTTT
14034212 AAAACTTTAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 51 0.93
42 4 0.07
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (41 bp):
GGTTCCTCTTAAACAAAGGCTTTGAAATCTCAATTGAAAAT
Found at i:14034891 original size:33 final size:33
Alignment explanation
Indices: 14034785--14034936 Score: 146
Period size: 33 Copynumber: 4.6 Consensus size: 33
14034775 TAGGCTTTAA
* * * *
14034785 CAGATAAACTGGGCTTAAAACTTCACTGATGGC
1 CAGATAAATTGGGCTTAAAACTTCATTAAGGGC
* * * *
14034818 TAGATAAATTGGG-TTTAAATTTCATCAAGGGC
1 CAGATAAATTGGGCTTAAAACTTCATTAAGGGC
* * * *
14034850 CA-ATTAAATTGGGTTTAAAACTTCATTGATGTC
1 CAGA-TAAATTGGGCTTAAAACTTCATTAAGGGC
* * *
14034883 CAGCTAAATTGGGCTTCAAATTTCATTAAGGGC
1 CAGATAAATTGGGCTTAAAACTTCATTAAGGGC
14034916 CAGATAAATTGGGCTTAAAAC
1 CAGATAAATTGGGCTTAAAAC
14034937 ATTAATATCT
Statistics
Matches: 91, Mismatches: 25, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
31 1 0.01
32 23 0.25
33 67 0.74
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (33 bp):
CAGATAAATTGGGCTTAAAACTTCATTAAGGGC
Found at i:14034927 original size:66 final size:65
Alignment explanation
Indices: 14034785--14034936 Score: 207
Period size: 65 Copynumber: 2.3 Consensus size: 65
14034775 TAGGCTTTAA
* * *
14034785 CAGATAAACTGGGCTTAAAACTTCACTGATGGCTAGATAAATTGGGTTTAAATTTCATCAAGGGC
1 CAGATAAATTGGGCTTAAAACTTCACTGATGGCCAGATAAATTGGGTTCAAATTTCATCAAGGGC
* * * * *
14034850 CA-ATTAAATTGGGTTTAAAACTTCATTGATGTCCAGCTAAATTGGGCTTCAAATTTCATTAAGG
1 CAGA-TAAATTGGGCTTAAAACTTCACTGATGGCCAGATAAATTGGG-TTCAAATTTCATCAAGG
14034914 GC
64 GC
14034916 CAGATAAATTGGGCTTAAAAC
1 CAGATAAATTGGGCTTAAAAC
14034937 ATTAATATCT
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
64 1 0.01
65 38 0.51
66 35 0.47
67 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (65 bp):
CAGATAAATTGGGCTTAAAACTTCACTGATGGCCAGATAAATTGGGTTCAAATTTCATCAAGGGC
Found at i:14034983 original size:152 final size:151
Alignment explanation
Indices: 14034796--14035082 Score: 425
Period size: 152 Copynumber: 1.9 Consensus size: 151
14034786 AGATAAACTG
* * *
14034796 GGCTTAAAACTTCACTGATGGCTAGATAAATTGGGTTTAAATTTCATCAAGGGCCA-ATTAAATT
1 GGCTTAAAACTTCACTGATGGCCAGATAAACTGGGTTTAAATTTCATCAAGGGCCAGA-TAAACT
** * *
14034860 GGGTTTAAAACTTCATTGATGTCCAGCTAAATTGGGCTTCAAATTTCATTAAGGGCCAGATAAAT
65 GGACTTAAAACTTCATTGATGGCCAACTAAATTGGGCTTC-AATTTCATTAAGGGCCAGATAAAT
14034925 TGGGCTTAAAACATTAATATCTA
129 TGGGCTTAAAACATTAATATCTA
* * *
14034948 GGCTTAAAACTTCATTGATGGCCA-ACTAAACTGGGTTTCAATTTCATTAAGGGCCAGATAAACT
1 GGCTTAAAACTTCACTGATGGCCAGA-TAAACTGGGTTTAAATTTCATCAAGGGCCAGATAAACT
* *
14035012 GGACTTAAAACTTCATTGATGGCTAACTAAATTGGGCTTCAATTTCATTAAGGGCCAGCTAAATT
65 GGACTTAAAACTTCATTGATGGCCAACTAAATTGGGCTTCAATTTCATTAAGGGCCAGATAAATT
14035077 GGGCTT
130 GGGCTT
14035083 GAATTTTTTT
Statistics
Matches: 121, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
151 31 0.26
152 89 0.74
153 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (151 bp):
GGCTTAAAACTTCACTGATGGCCAGATAAACTGGGTTTAAATTTCATCAAGGGCCAGATAAACTG
GACTTAAAACTTCATTGATGGCCAACTAAATTGGGCTTCAATTTCATTAAGGGCCAGATAAATTG
GGCTTAAAACATTAATATCTA
Found at i:14035003 original size:32 final size:32
Alignment explanation
Indices: 14034958--14035088 Score: 120
Period size: 32 Copynumber: 4.1 Consensus size: 32
14034948 GGCTTAAAAC
* * *
14034958 TTCATTGATGGCCAACTAAACTGGGTTTCAAT
1 TTCATTAAGGGCCAACTAAACTGGGCTTCAAT
* * *
14034990 TTCATTAAGGGCCAGA-TAAACTGGACTTAAAAC
1 TTCATTAAGGGCCA-ACTAAACTGGGCTT-CAAT
* * * *
14035023 TTCATTGATGGCTAACTAAATTGGGCTTCAAT
1 TTCATTAAGGGCCAACTAAACTGGGCTTCAAT
* * *
14035055 TTCATTAAGGGCCAGCTAAATTGGGCTTGAAT
1 TTCATTAAGGGCCAACTAAACTGGGCTTCAAT
14035087 TT
1 TT
14035089 TTTTTAAAAT
Statistics
Matches: 78, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
32 54 0.69
33 24 0.31
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (32 bp):
TTCATTAAGGGCCAACTAAACTGGGCTTCAAT
Found at i:14035019 original size:86 final size:87
Alignment explanation
Indices: 14034864--14035022 Score: 257
Period size: 86 Copynumber: 1.8 Consensus size: 87
14034854 TAAATTGGGT
* * * * *
14034864 TTAAAACTTCATTGATGTCCAGCTAAATTGGGCTTCAAATTTCATTAAGGGCCAGATAAATTGGG
1 TTAAAACTTCATTGATGGCCAACTAAACTGGGCTTCAAATTTCATTAAGGGCCAGATAAACTGGA
14034929 CTTAAAACATTAATATCTAGGC
66 CTTAAAACATTAATATCTAGGC
*
14034951 TTAAAACTTCATTGATGGCCAACTAAACTGGGTTTC-AATTTCATTAAGGGCCAGATAAACTGGA
1 TTAAAACTTCATTGATGGCCAACTAAACTGGGCTTCAAATTTCATTAAGGGCCAGATAAACTGGA
14035015 CTTAAAAC
66 CTTAAAAC
14035023 TTCATTGATG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
86 34 0.52
87 32 0.48
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (87 bp):
TTAAAACTTCATTGATGGCCAACTAAACTGGGCTTCAAATTTCATTAAGGGCCAGATAAACTGGA
CTTAAAACATTAATATCTAGGC
Found at i:14035054 original size:65 final size:65
Alignment explanation
Indices: 14034950--14035074 Score: 214
Period size: 65 Copynumber: 1.9 Consensus size: 65
14034940 AATATCTAGG
*
14034950 CTTAAAACTTCATTGATGGCCAACTAAACTGGGTTTCAATTTCATTAAGGGCCAGATAAACTGGA
1 CTTAAAACTTCATTGATGGCCAACTAAACTGGGCTTCAATTTCATTAAGGGCCAGATAAACTGGA
* * *
14035015 CTTAAAACTTCATTGATGGCTAACTAAATTGGGCTTCAATTTCATTAAGGGCCAGCTAAA
1 CTTAAAACTTCATTGATGGCCAACTAAACTGGGCTTCAATTTCATTAAGGGCCAGATAAA
14035075 TTGGGCTTGA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 56 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (65 bp):
CTTAAAACTTCATTGATGGCCAACTAAACTGGGCTTCAATTTCATTAAGGGCCAGATAAACTGGA
Found at i:14035602 original size:12 final size:10
Alignment explanation
Indices: 14035568--14035609 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
14035558 CTAGAGCTAC
14035568 TTTTATTTTTA
1 TTTT-TTTTTA
14035579 -TTTTTTTTA
1 TTTTTTTTTA
14035588 TTTTTTGTTTGA
1 TTTTTT-TTT-A
14035600 TTTTTTTTTA
1 TTTTTTTTTA
14035610 CACACCATGC
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
9 6 0.21
10 9 0.32
11 6 0.21
12 7 0.25
ACGTcount: A:0.12, C:0.00, G:0.05, T:0.83
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:14035973 original size:11 final size:10
Alignment explanation
Indices: 14035948--14035977 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
14035938 CATTCATTTC
14035948 TCTTCTTTTT
1 TCTTCTTTTT
14035958 TCTTCTTTTAT
1 TCTTCTTTT-T
14035969 TCTTCTTTT
1 TCTTCTTTT
14035978 CCTTTCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (10 bp):
TCTTCTTTTT
Found at i:14035992 original size:21 final size:20
Alignment explanation
Indices: 14035940--14035998 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
14035930 TTTCTACCCA
*
14035940 TTCATTTCTCTTCTTTTTT-C
1 TTCATTT-TATTCTTTTTTCC
14035960 TTC-TTTTATTCTTCTTTTCC
1 TTCATTTTATTCTT-TTTTCC
14035980 TTTCATTTT-TTCTTTTTTC
1 -TTCATTTTATTCTTTTTTC
14035999 TTTTGCGTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
18 6 0.18
19 7 0.21
20 9 0.26
21 8 0.24
22 4 0.12
ACGTcount: A:0.05, C:0.22, G:0.00, T:0.73
Consensus pattern (20 bp):
TTCATTTTATTCTTTTTTCC
Found at i:14037176 original size:18 final size:18
Alignment explanation
Indices: 14037133--14037177 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
14037123 AGACTCACAA
*
14037133 CTTATTTTTTCTTTTTTC
1 CTTATTTTTACTTTTTTC
* *
14037151 CTTCTTTTTACTTTTTTT
1 CTTATTTTTACTTTTTTC
*
14037169 TTTATTTTT
1 CTTATTTTT
14037178 TTAAGACATT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (18 bp):
CTTATTTTTACTTTTTTC
Found at i:14043038 original size:36 final size:35
Alignment explanation
Indices: 14042988--14043059 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 35
14042978 TGGGTCGATA
14042988 AAATAAAGAGATCGGGATTAAACCT-CAAGTCAAAG
1 AAATAAAGAGATCGGGATTAAA-CTACAAGTCAAAG
* *
14043023 AAATAATGATGATCGGGATTAAACTACGAGTCAAAG
1 AAATAAAGA-GATCGGGATTAAACTACAAGTCAAAG
14043059 A
1 A
14043060 TTAAAGACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
35 10 0.30
36 23 0.70
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.19
Consensus pattern (35 bp):
AAATAAAGAGATCGGGATTAAACTACAAGTCAAAG
Found at i:14043159 original size:38 final size:35
Alignment explanation
Indices: 14043115--14043264 Score: 106
Period size: 35 Copynumber: 4.1 Consensus size: 35
14043105 TCAGGATTAG
14043115 ACCACAAGTCAGGAAACCATAAAAATGATCGGGATTGA
1 ACCACAAGTCA-GAAA--ATAAAAATGATCGGGATTGA
* ** * * *
14043153 ACCACAAGTCA-AAGATTAACGACGA-CTGAGACTGA
1 ACCACAAGTCAGAA-AATAAAAATGATC-GGGATTGA
* * *
14043188 ACCACAAGTCAGAAAATAGAAATGACCGGGATTAA
1 ACCACAAGTCAGAAAATAAAAATGATCGGGATTGA
* * *
14043223 ACCGCGAGTCAAGAAACTATAAAAATGATCGGGGTTGA
1 ACCACAAGTC-AGAAA--ATAAAAATGATCGGGATTGA
14043261 ACCA
1 ACCA
14043265 TGAGTTAAAG
Statistics
Matches: 84, Mismatches: 21, Indels: 14
0.71 0.18 0.12
Matches are distributed among these distances:
34 1 0.01
35 42 0.50
36 10 0.12
37 1 0.01
38 30 0.36
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.15
Consensus pattern (35 bp):
ACCACAAGTCAGAAAATAAAAATGATCGGGATTGA
Found at i:14043285 original size:108 final size:108
Alignment explanation
Indices: 14043000--14043451 Score: 369
Period size: 108 Copynumber: 4.2 Consensus size: 108
14042990 ATAAAGAGAT
* ** * *
14043000 CGGGATTAAACCTCAAGTCAA-AGAA--ATAATGATGATCGGGATTAAACTACGAGTCAAAGATT
1 CGGGATTAAACCACAAGTCAAGA-AACTATAAAAATGATCGGGATTAAACCACAAGTCAAAGATT
* * * * * ** *
14043062 AAAGACAACT-AGGACTAAACCGTAAGTTAGAAAATAGAAACAAT
65 AACGACGACTGA-GACTGAACCGCAAGTCAGAAAATAGAAATGAC
* * * * *
14043106 CAGGATTAGACCACAAGTCAGGAAACCATAAAAATGATCGGGATTGAACCACAAGTCAAAGATTA
1 CGGGATTAAACCACAAGTCAAGAAACTATAAAAATGATCGGGATTAAACCACAAGTCAAAGATTA
*
14043171 ACGACGACTGAGACTGAACCACAAGTCAGAAAATAGAAATGAC
66 ACGACGACTGAGACTGAACCGCAAGTCAGAAAATAGAAATGAC
* * * * ** *
14043214 CGGGATTAAACCGCGAGTCAAGAAACTATAAAAATGATCGGGGTTGAACCATGAGTTAAAGATTA
1 CGGGATTAAACCACAAGTCAAGAAACTATAAAAATGATCGGGATTAAACCACAAGTCAAAGATTA
* * * * * * * *
14043279 ATGACGATTGAAACTGAATCGCAAGTCAGGAAACA-AAGTTAC
66 ACGACGACTGAGACTGAACCGCAAGTCAGAAAATAGAAATGAC
* * * * * * *
14043321 TGAGATTAAACCACAAGTCGA-AAACTATAGAAATGA-CTAGGATTAAACCATAAGCCAAAGATT
1 CGGGATTAAACCACAAGTCAAGAAACTATAAAAATGATC-GGGATTAAACCACAAGTCAAAGATT
* * * * *
14043384 AACAATGACTGGGACTGAACCGCAAGTCAGAAAACTATAAAAATGAT
65 AACGACGACTGAGACTGAACCGCAAGTCAG-AAA--ATAGAAATGAC
* *
14043431 CGGGATTGAACCACGAGTCAA
1 CGGGATTAAACCACAAGTCAA
14043452 AGATTAATGA
Statistics
Matches: 271, Mismatches: 66, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
105 1 0.00
106 75 0.28
107 24 0.09
108 148 0.55
109 3 0.01
110 20 0.07
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.18
Consensus pattern (108 bp):
CGGGATTAAACCACAAGTCAAGAAACTATAAAAATGATCGGGATTAAACCACAAGTCAAAGATTA
ACGACGACTGAGACTGAACCGCAAGTCAGAAAATAGAAATGAC
Found at i:14043442 original size:179 final size:181
Alignment explanation
Indices: 14043208--14043630 Score: 520
Period size: 179 Copynumber: 2.4 Consensus size: 181
14043198 AGAAAATAGA
* * * * * * *
14043208 AATGACCGGGATTAAACCGCGAGTCA-AGAAACTATAAAAATGATCGGGGTTGAACCATGAGTTA
1 AATGACTGGGACTGAACCGCAAGTCAGA-AAACTATAAAAATGATCGGGATTGAACCACGAGTCA
* ** * *
14043272 AAGATTAATGACGATTGAAACTGAATCGCAAGTC-AGGAAA-CAAAGTTACTGAGATTAAACCAC
65 AAGATTAATGACGATTGAAACTGAATCGCAAATCAAAAAAATAAAAGTGACTGAGATTAAACCAC
* * *
14043335 AAGTCGAAAACTATAGAAATGACTAG-GATTAAACCATAAGCCAAAGATTAAC
130 AAGTCGAAAACTATAGAAATAAC-AGAGATTAAACAACAAGCCAAAGATTAAC
14043387 AATGACTGGGACTGAACCGCAAGTCAGAAAACTATAAAAATGATCGGGATTGAACCACGAGTCAA
1 AATGACTGGGACTGAACCGCAAGTCAGAAAACTATAAAAATGATCGGGATTGAACCACGAGTCAA
* * *
14043452 AGATTAATGACGATTGAGACTGAATCGTAAATCAAAAAAATAAAAGTGACTGGGATTAAACCACA
66 AGATTAATGACGATTGAAACTGAATCGCAAATCAAAAAAATAAAAGTGACTGAGATTAAACCACA
* * *
14043517 AGTCGAAAACTATAGAAATAACCGAGATTAAACAACGAGCCAAATATTAAC
131 AGTCGAAAACTATAGAAATAACAGAGATTAAACAACAAGCCAAAGATTAAC
* * * * * *
14043568 AATAACTAGGACTGAA-CGCAAATCAGGAAA--ATAAAAATGA-CTGGGATTAAACCACAAGTCA
1 AATGACTGGGACTGAACCGCAAGTCAGAAAACTATAAAAATGATC-GGGATTGAACCACGAGTCA
14043629 AA
65 AA
14043631 AAATAAAAAT
Statistics
Matches: 212, Mismatches: 27, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
177 1 0.00
178 29 0.14
179 86 0.41
180 18 0.08
181 78 0.37
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (181 bp):
AATGACTGGGACTGAACCGCAAGTCAGAAAACTATAAAAATGATCGGGATTGAACCACGAGTCAA
AGATTAATGACGATTGAAACTGAATCGCAAATCAAAAAAATAAAAGTGACTGAGATTAAACCACA
AGTCGAAAACTATAGAAATAACAGAGATTAAACAACAAGCCAAAGATTAAC
Found at i:14043473 original size:73 final size:72
Alignment explanation
Indices: 14043319--14043518 Score: 170
Period size: 73 Copynumber: 2.8 Consensus size: 72
14043309 AAACAAAGTT
* * * *
14043319 ACTGAGATTAAACCACAAGTCGAAAACTATAGAAATGACTAGGATTAAACCATAAGCCAAAGATT
1 ACTGAGACTGAACCACAAGTCGAAAACTATAAAAATGACTAGGATTAAACCACAAGCCAAAGATT
*
14043384 AACAATG
66 AACAACG
* * * * * *
14043391 ACTGGGACTGAACCGCAAGTCAGAAAACTATAAAAATGA-TCGGGATTGAACCACGAGTCAAAGA
1 ACTGAGACTGAACCACAAGTC-GAAAACTATAAAAATGACT-AGGATTAAACCACAAGCCAAAGA
**
14043455 TTAATGACG
64 TTAACAACG
* * ** * ** * *
14043464 ATTGAGACTGAATCGTAAATC-AAAAAAATAAAAGTGACTGGGATTAAACCACAAG
1 ACTGAGACTGAACCACAAGTCGAAAACTATAAAAATGACTAGGATTAAACCACAAG
14043519 TCGAAAACTA
Statistics
Matches: 102, Mismatches: 23, Indels: 7
0.77 0.17 0.05
Matches are distributed among these distances:
71 27 0.26
72 19 0.19
73 56 0.55
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (72 bp):
ACTGAGACTGAACCACAAGTCGAAAACTATAAAAATGACTAGGATTAAACCACAAGCCAAAGATT
AACAACG
Found at i:14043582 original size:181 final size:179
Alignment explanation
Indices: 14043222--14043630 Score: 515
Period size: 181 Copynumber: 2.3 Consensus size: 179
14043212 ACCGGGATTA
* * * *
14043222 AACCGCGAGTCA-AGAAACTATAAAAATGATCGGGGTTGAACCATGAGTTAAAGATTAATGACGA
1 AACCGCAAGTCAGA-AAACTATAAAAATGATCGGGATTGAACCACGAGTCAAAGATTAATGACGA
* ** * *
14043286 TTGAAACTGAATCGCAAGTCAGGAAACAAAGTTACTGAGATTAAACCACAAGTCGAAAACTATAG
65 TTGAAACTGAATCGCAAATCAAAAAAAAAAGTGACTGAGATTAAACCACAAGTCGAAAACTATAG
* * * * * *
14043351 AAATGACTAGGATTAAACCATAAGCCAAAGATTAACAATGACTGGGACTG
130 AAATAACGAGGATTAAACAACAAGCCAAAGATTAACAATAACTAGGACTG
14043401 AACCGCAAGTCAGAAAACTATAAAAATGATCGGGATTGAACCACGAGTCAAAGATTAATGACGAT
1 AACCGCAAGTCAGAAAACTATAAAAATGATCGGGATTGAACCACGAGTCAAAGATTAATGACGAT
* * *
14043466 TGAGACTGAATCGTAAATCAAAAAAATAAAAGTGACTGGGATTAAACCACAAGTCGAAAACTATA
66 TGAAACTGAATCGCAAATC-AAAAAA-AAAAGTGACTGAGATTAAACCACAAGTCGAAAACTATA
* *
14043531 GAAATAACCGA-GATTAAACAACGAGCCAAATATTAACAATAACTAGGACTG
129 GAAATAA-CGAGGATTAAACAACAAGCCAAAGATTAACAATAACTAGGACTG
* * * *
14043582 AA-CGCAAATCAGGAAA--ATAAAAATGA-CTGGGATTAAACCACAAGTCAAA
1 AACCGCAAGTCAGAAAACTATAAAAATGATC-GGGATTGAACCACGAGTCAAA
14043631 AAATAAAAAT
Statistics
Matches: 201, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
177 1 0.00
178 29 0.14
179 75 0.37
180 17 0.08
181 77 0.38
182 2 0.01
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (179 bp):
AACCGCAAGTCAGAAAACTATAAAAATGATCGGGATTGAACCACGAGTCAAAGATTAATGACGAT
TGAAACTGAATCGCAAATCAAAAAAAAAAGTGACTGAGATTAAACCACAAGTCGAAAACTATAGA
AATAACGAGGATTAAACAACAAGCCAAAGATTAACAATAACTAGGACTG
Found at i:14043616 original size:107 final size:105
Alignment explanation
Indices: 14043469--14043716 Score: 311
Period size: 105 Copynumber: 2.3 Consensus size: 105
14043459 TGACGATTGA
* * * *
14043469 GACTGAATCGTAAATCAAAAAAATAAAAGTGACTGGGATTAAACCACAAGTCGAAAACTATAGAA
1 GACTGAA-CGCAAATCAAAAAAATAAAAATGACTGGGATTAAACCACAAGTC-AAAA-AATAAAA
14043534 ATAACCGAGATTAAACAACGAGCCAAATATTAACAATAACTAG
63 ATAACCGAGATTAAACAACGAGCCAAATATTAACAATAACTAG
** *
14043577 GACTGAACGCAAATCAGGAAAATAAAAATGACTGGGATTAAACCACAAGTCAAAAAATAAAAATG
1 GACTGAACGCAAATCAAAAAAATAAAAATGACTGGGATTAAACCACAAGTCAAAAAATAAAAATA
* * * * * *
14043642 ATCGAGATTAAACCACGAGCCAAATATTAATAATGATTGG
66 ACCGAGATTAAACAACGAGCCAAATATTAACAATAACTAG
14043682 GACTGAAC-CATAAATCAAAAAAATAAATAA-GACTG
1 GACTGAACGC--AAATCAAAAAAATAAA-AATGACTG
14043717 AGCTATGAGT
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
104 1 0.01
105 49 0.40
106 23 0.19
107 42 0.34
108 7 0.06
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.19
Consensus pattern (105 bp):
GACTGAACGCAAATCAAAAAAATAAAAATGACTGGGATTAAACCACAAGTCAAAAAATAAAAATA
ACCGAGATTAAACAACGAGCCAAATATTAACAATAACTAG
Found at i:14043634 original size:35 final size:35
Alignment explanation
Indices: 14043319--14043716 Score: 140
Period size: 35 Copynumber: 11.1 Consensus size: 35
14043309 AAACAAAGTT
* * *
14043319 ACTGAGATTAAACCACAAGTCGAAAACTATAGAAATG
1 ACTGGGATTAAACCACAAGTC-AAAA-AATAAAAATG
* * * * * *
14043356 ACTAGGATTAAACCATAAGCCAAAGATTAACAATG
1 ACTGGGATTAAACCACAAGTCAAAAAATAAAAATG
* * *
14043391 ACTGGGACTGAACCGCAAGTCAGAAAACTATAAAAATG
1 ACTGGGATTAAACCACAAGTCA-AAAA--ATAAAAATG
* * * * ** *
14043429 A-TCGGGATTGAACCACGAGTCAAAGATTAATGACG
1 ACT-GGGATTAAACCACAAGTCAAAAAATAAAAATG
* * * * * ** * *
14043464 ATTGAGACTGAATCGTAAATCAAAAAAATAAAAGTG
1 ACTGGGATTAAACCACAAGTC-AAAAAATAAAAATG
* * *
14043500 ACTGGGATTAAACCACAAGTCGAAAACTATAGAAATA
1 ACTGGGATTAAACCACAAGTC-AAAA-AATAAAAATG
* * * * * * * * *
14043537 ACCGAGATTAAACAACGAGCCAAATATTAACAATA
1 ACTGGGATTAAACCACAAGTCAAAAAATAAAAATG
* * * *
14043572 ACTAGGACTGAACGCA-AA-TCAGGAAAATAAAAATG
1 ACTGGGATTAAAC-CACAAGTCA-AAAAATAAAAATG
14043607 ACTGGGATTAAACCACAAGTCAAAAAATAAAAATG
1 ACTGGGATTAAACCACAAGTCAAAAAATAAAAATG
* * * * * *
14043642 A-TCGAGATTAAACCACGAGCCAAATATTAATAATG
1 ACT-GGGATTAAACCACAAGTCAAAAAATAAAAATG
* * * * *
14043677 ATTGGGACTGAACCATAAATCAAAAAAATAAATAA-G
1 ACTGGGATTAAACCACAAGTC-AAAAAATAAA-AATG
14043713 ACTG
1 ACTG
14043717 AGCTATGAGT
Statistics
Matches: 250, Mismatches: 96, Indels: 31
0.66 0.25 0.08
Matches are distributed among these distances:
34 5 0.02
35 125 0.50
36 51 0.20
37 45 0.18
38 24 0.10
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.19
Consensus pattern (35 bp):
ACTGGGATTAAACCACAAGTCAAAAAATAAAAATG
Found at i:14044754 original size:23 final size:23
Alignment explanation
Indices: 14044740--14044792 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
14044730 TTTTTTTGTA
14044740 TTTTTTT-CATCTTTTTCTTTTT
1 TTTTTTTGCATCTTTTTCTTTTT
14044762 TTTTTTTGCATCTTTTTCTTTTT
1 TTTTTTTGCATCTTTTTCTTTTT
14044785 CTTTTTTT
1 -TTTTTTT
14044793 TAAGCAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 7 0.24
23 15 0.52
24 7 0.24
ACGTcount: A:0.04, C:0.13, G:0.02, T:0.81
Consensus pattern (23 bp):
TTTTTTTGCATCTTTTTCTTTTT
Found at i:14044766 original size:32 final size:29
Alignment explanation
Indices: 14044725--14044793 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
14044715 GAATAACTTT
* *
14044725 TTTTTTTTTTTTGTATTTTTTTCATCTTTTTC
1 TTTTTTTTTTTTGCA-TCTTTT--TCTTTTTC
14044757 TTTTTTTTTTTTGCATCTTTTTCTTTTTC
1 TTTTTTTTTTTTGCATCTTTTTCTTTTTC
14044786 TTTTTTTT
1 TTTTTTTT
14044794 AAGCAAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
29 16 0.46
31 5 0.14
32 14 0.40
ACGTcount: A:0.04, C:0.10, G:0.03, T:0.83
Consensus pattern (29 bp):
TTTTTTTTTTTTGCATCTTTTTCTTTTTC
Found at i:14056184 original size:15 final size:16
Alignment explanation
Indices: 14056166--14056230 Score: 75
Period size: 15 Copynumber: 4.2 Consensus size: 16
14056156 TTTTTTAGAA
14056166 TTTTGGATTTTAA-GG
1 TTTTGGATTTTAAGGG
14056181 TTTTGGATTTT-AGGG
1 TTTTGGATTTTAAGGG
* *
14056196 -CTTGG-GTTTAAGGG
1 TTTTGGATTTTAAGGG
14056210 ATTTTGGATTTTAAGGG
1 -TTTTGGATTTTAAGGG
14056227 TTTT
1 TTTT
14056231 AGAATCCTAG
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
13 3 0.07
14 9 0.22
15 13 0.32
16 8 0.20
17 8 0.20
ACGTcount: A:0.17, C:0.02, G:0.31, T:0.51
Consensus pattern (16 bp):
TTTTGGATTTTAAGGG
Found at i:14056620 original size:23 final size:23
Alignment explanation
Indices: 14056573--14056620 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
14056563 AATAAAAAAA
* *
14056573 TATTCTTATTATAATTTTTAGTT
1 TATTATTATTATAATTATTAGTT
* *
14056596 TATTATTATTATTATTATTATTT
1 TATTATTATTATAATTATTAGTT
14056619 TA
1 TA
14056621 GCTTTTTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (23 bp):
TATTATTATTATAATTATTAGTT
Found at i:14056773 original size:18 final size:19
Alignment explanation
Indices: 14056724--14056775 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
14056714 ATCATGCATG
*
14056724 AATATATAAAAAAAATACTC
1 AATATAT-AAAAAAATAATC
14056744 AA-A-ATAACAAAAATAAT-
1 AATATATAA-AAAAATAATC
14056761 AATATATAAAAAAAT
1 AATATATAAAAAAAT
14056776 TCAAAAATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
17 4 0.14
18 17 0.61
19 5 0.18
20 2 0.07
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (19 bp):
AATATATAAAAAAATAATC
Found at i:14060626 original size:22 final size:21
Alignment explanation
Indices: 14060575--14060628 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
14060565 ACTTGGATTT
*
14060575 TTTTGGTTTTGGATTTTAGGG
1 TTTTGATTTTGGATTTTAGGG
* *
14060596 TTTAGGATTTTGGATTTTTTGGG
1 TTT-TGATTTTGGA-TTTTAGGG
14060619 TTTTGATTTT
1 TTTTGATTTT
14060629 AGGGATTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 3 0.11
22 14 0.52
23 10 0.37
ACGTcount: A:0.11, C:0.00, G:0.28, T:0.61
Consensus pattern (21 bp):
TTTTGATTTTGGATTTTAGGG
Found at i:14060642 original size:37 final size:38
Alignment explanation
Indices: 14060567--14060642 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 38
14060557 TTTTAGAAAC
* *
14060567 TTGGATTTTTTTGGTTTTGGATTTTAGGGTTTAGGATT
1 TTGGATTTTTTGGGTTTTGGATTTTAGGGTTGAGGATT
14060605 TTGGATTTTTTGGGTTTT-GATTTTAGGGATTGA-GATT
1 TTGGATTTTTTGGGTTTTGGATTTTAGGG-TTGAGGATT
14060642 T
1 T
14060643 GGGGTTTTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
37 15 0.43
38 20 0.57
ACGTcount: A:0.14, C:0.00, G:0.29, T:0.57
Consensus pattern (38 bp):
TTGGATTTTTTGGGTTTTGGATTTTAGGGTTGAGGATT
Found at i:14063346 original size:16 final size:15
Alignment explanation
Indices: 14063311--14063355 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
14063301 TTTTTTTTAA
*
14063311 TTTTTTATGTTAACAT
1 TTTTTTAT-TTAAAAT
14063327 TTTTTTATTTAAAAT
1 TTTTTTATTTAAAAT
* *
14063342 CTTTTAATTTAAAA
1 TTTTTTATTTAAAA
14063356 ATATCAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 18 0.69
16 8 0.31
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (15 bp):
TTTTTTATTTAAAAT
Found at i:14063559 original size:19 final size:21
Alignment explanation
Indices: 14063514--14063565 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
14063504 TTTTTTTTTT
14063514 TTAC-TTTTTTATGTTAAAAC
1 TTACTTTTTTTATGTTAAAAC
*
14063534 TTA-TTTTTTTAT-TTGAAA-
1 TTACTTTTTTTATGTTAAAAC
14063552 TTACTTTTTATTAT
1 TTACTTTTT-TTAT
14063566 AATAATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.11
19 10 0.36
20 15 0.54
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (21 bp):
TTACTTTTTTTATGTTAAAAC
Found at i:14063921 original size:211 final size:217
Alignment explanation
Indices: 14063512--14063953 Score: 544
Period size: 211 Copynumber: 2.1 Consensus size: 217
14063502 CTTTTTTTTT
* *
14063512 TTTTACTTTTTTATGTTAAAACTTATTTTTTTATTTGAAATTACTTTTTATTATAATAATAAATT
1 TTTTACATTTTTATGTTAAAACTTATTTTTTGATTTGAAATTACTTTTTATTATAATAATAAATT
* * *
14063577 TTTATCTTATCAATTTGATTATTTACGTTATAATAATATATTTTTACACTTGTTCTTATCTTTTA
66 TTTATCTTATCAATTTAATTATTTACGTTAAAATAATATATTTTTACACTTGTTCTTATATTTTA
* * * *
14063642 TTACGTTTAGAATTATCACTACTTATTTCTTAAGGTATTACAATGCTTCTAATCACTTTATGCCA
131 TTAAGTTTAGAATTATCACAACTTATTTCTTAAGGTATTACAATGCTTCTAACCACTTTATACCA
14063707 AATGATACAAATTTTACGATTA
196 AATGATACAAATTTTACGATTA
* *
14063729 TTTTACATTTTTATG-TAAACACTTATTTTTTGA-TTG-AATTAGTTTTTATT-T-ATAATAATT
1 TTTTACATTTTTATGTTAAA-ACTTATTTTTTGATTTGAAATTACTTTTTATTATAATAATAAAT
* * * **
14063789 CTTTTATGTTGTCAATTTAATTATTTATGTTAAAATAAT-T-TTTTTATGCTTGTT-TTATATTT
65 -TTTTATCTTATCAATTTAATTATTTACGTTAAAATAATATATTTTTACACTTGTTCTTATATTT
* * * * * *
14063851 TATTAAGTTTAGAATTATTACAAC-TATTTCTTAGGGTGTTACGATAG-TTTTAACCTATTTTAT
129 TATTAAGTTTAGAATTATCACAACTTATTTCTTAAGGTATTACAAT-GCTTCTAACC-ACTTTAT
* *
14063914 ACCAAATGATACTAATTTTACTATTA
192 ACCAAATGATACAAATTTTACGATTA
*
14063940 TTCTCACATTTTTA
1 TT-TTACATTTTTA
14063954 CATTAAATTA
Statistics
Matches: 195, Mismatches: 25, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
210 24 0.12
211 60 0.31
212 22 0.11
213 9 0.05
214 34 0.17
215 13 0.07
216 7 0.04
217 26 0.13
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.53
Consensus pattern (217 bp):
TTTTACATTTTTATGTTAAAACTTATTTTTTGATTTGAAATTACTTTTTATTATAATAATAAATT
TTTATCTTATCAATTTAATTATTTACGTTAAAATAATATATTTTTACACTTGTTCTTATATTTTA
TTAAGTTTAGAATTATCACAACTTATTTCTTAAGGTATTACAATGCTTCTAACCACTTTATACCA
AATGATACAAATTTTACGATTA
Found at i:14064471 original size:22 final size:22
Alignment explanation
Indices: 14064446--14064496 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
14064436 TTTTGTTTAA
**
14064446 AATTATTTT-TATTTGCAATAAT
1 AATTATTTTATATTACCAAT-AT
14064468 AATT-TTTTATATTACCAATAT
1 AATTATTTTATATTACCAATAT
14064489 AATTATTT
1 AATTATTT
14064497 ACATTATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (22 bp):
AATTATTTTATATTACCAATAT
Found at i:14064490 original size:21 final size:22
Alignment explanation
Indices: 14064461--14064510 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
14064451 TTTTTATTTG
* *
14064461 CAATAATAATTTTTTATATTAC
1 CAATAATAATTATTTACATTAC
14064483 CAAT-ATAATTATTTACATTA-
1 CAATAATAATTATTTACATTAC
*
14064503 TAATAATA
1 CAATAATA
14064511 TCTTTTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.12
21 17 0.71
22 4 0.17
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (22 bp):
CAATAATAATTATTTACATTAC
Found at i:14064717 original size:21 final size:21
Alignment explanation
Indices: 14064693--14064744 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
14064683 TAATAATTCT
14064693 TTTATGTTGTCAAAAATATTA
1 TTTATGTTGTCAAAAATATTA
* *
14064714 TTTATGTTG-CAATAATATTT
1 TTTATGTTGTCAAAAATATTA
14064734 TTTATAGTTGT
1 TTTAT-GTTGT
14064745 TTCTACTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.31, C:0.04, G:0.12, T:0.54
Consensus pattern (21 bp):
TTTATGTTGTCAAAAATATTA
Found at i:14064732 original size:20 final size:20
Alignment explanation
Indices: 14064669--14064743 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 20
14064659 TTTAGAATTG
*
14064669 TTATTTAT-TTGTAATAATAA
1 TTATTTATGTTGCAATAAT-A
* *
14064689 TTCTTTTATGTTGTCAAAAATA
1 TT-ATTTATGTTG-CAATAATA
14064711 TTATTTATGTTGCAATAATA
1 TTATTTATGTTGCAATAATA
*
14064731 TTTTTTATAGTTG
1 TTATTTAT-GTTG
14064744 TTTCTACTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
20 16 0.36
21 18 0.40
22 6 0.13
23 5 0.11
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.55
Consensus pattern (20 bp):
TTATTTATGTTGCAATAATA
Found at i:14065176 original size:17 final size:18
Alignment explanation
Indices: 14065146--14065191 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
14065136 TTGAATTATT
* *
14065146 TTTTATTTATATTACTAA
1 TTTTATTTACATTACCAA
14065164 TTTT-TTTACATTACCAA
1 TTTTATTTACATTACCAA
14065181 -TTTA-TTACATT
1 TTTTATTTACATT
14065192 TCAATAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 10 0.40
17 11 0.44
18 4 0.16
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTTATTTACATTACCAA
Found at i:14065525 original size:43 final size:43
Alignment explanation
Indices: 14065472--14065557 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
14065462 TAAAATTATA
* *
14065472 ACTTTTTTCTTAAAAATGTTACGACACTTCTAA-CTATTTTACG
1 ACTTGTTTCTTAAAAATGTTAAGACACTTCTAATC-ATTTTACG
*
14065515 ACTTGTTTCTTAAAAGTGTTAAGACACTTCTAATCATTTTACG
1 ACTTGTTTCTTAAAAATGTTAAGACACTTCTAATCATTTTACG
14065558 CCAAATAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
43 38 0.97
44 1 0.03
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.43
Consensus pattern (43 bp):
ACTTGTTTCTTAAAAATGTTAAGACACTTCTAATCATTTTACG
Found at i:14065692 original size:21 final size:22
Alignment explanation
Indices: 14065634--14065693 Score: 54
Period size: 21 Copynumber: 2.8 Consensus size: 22
14065624 TAATTATTTG
*
14065634 TAATAATAATTCTTTTACGTTAC
1 TAATAAT-ATTTTTTTACGTTAC
* *
14065657 CAA-AAGTA-TTATTTACGTTA-
1 TAATAA-TATTTTTTTACGTTAC
14065677 TAATAATATTTTTTTAC
1 TAATAATATTTTTTTAC
14065694 ATTTATTCTT
Statistics
Matches: 29, Mismatches: 5, Indels: 8
0.69 0.12 0.19
Matches are distributed among these distances:
20 4 0.14
21 19 0.66
22 3 0.10
23 3 0.10
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.48
Consensus pattern (22 bp):
TAATAATATTTTTTTACGTTAC
Found at i:14066328 original size:22 final size:22
Alignment explanation
Indices: 14066303--14066345 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
14066293 TTTTCACTTT
*
14066303 TTTACAATAACTTTTTT-TTTGG
1 TTTAAAATAA-TTTTTTATTTGG
*
14066325 TTTAAAATTATTTTTTATTTG
1 TTTAAAATAATTTTTTATTTG
14066346 TAATAATCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.63
Consensus pattern (22 bp):
TTTAAAATAATTTTTTATTTGG
Found at i:14070686 original size:18 final size:18
Alignment explanation
Indices: 14070665--14070703 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
14070655 ATTATAATCC
14070665 TTTACAATATTCTTTACA
1 TTTACAATATTCTTTACA
*
14070683 TTTACAATATTCTTTATA
1 TTTACAATATTCTTTACA
14070701 TTT
1 TTT
14070704 TCAAATGAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.13, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTACAATATTCTTTACA
Found at i:14071507 original size:63 final size:66
Alignment explanation
Indices: 14071439--14071569 Score: 169
Period size: 63 Copynumber: 2.0 Consensus size: 66
14071429 GATGACTTTT
* * * * *
14071439 TAATTAATTATTGAAAACTTAAAAGTAACT-A-GTATAACTTAGTAG-AAATCATTGATAACTTA
1 TAATTAATTAGTGAAAACTTAAAAGTAAATCATGAATAACTTAGTAGTAAATCAGTGATAACCTA
14071501 A
66 A
* * *
14071502 TAATTAATTAGTGATAACTTAATAGTAAATCATGAATAACTTAGTAGTAAATTAGTGATAACCTA
1 TAATTAATTAGTGAAAACTTAAAAGTAAATCATGAATAACTTAGTAGTAAATCAGTGATAACCTA
14071567 A
66 A
14071568 TA
1 TA
14071570 GTAAATGAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
63 26 0.46
64 1 0.02
65 13 0.23
66 17 0.30
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.35
Consensus pattern (66 bp):
TAATTAATTAGTGAAAACTTAAAAGTAAATCATGAATAACTTAGTAGTAAATCAGTGATAACCTA
A
Found at i:14071541 original size:44 final size:44
Alignment explanation
Indices: 14071450--14071664 Score: 153
Period size: 44 Copynumber: 5.0 Consensus size: 44
14071440 AATTAATTAT
* * *
14071450 TGAA-AACTTAA-AAGTAACTAGT-ATAACTTAGTAG-AAATCA
1 TGAATAACTTAATAATTAATTAGTGATAACTTAATAGTAAATCA
14071490 TTG-ATAACTTAATAATTAATTAGTGATAACTTAATAGTAAATCA
1 -TGAATAACTTAATAATTAATTAGTGATAACTTAATAGTAAATCA
* * * * *
14071534 TGAATAACTTAGTAGTAAATTAGTGATAACCTAATAGTAAATGAA
1 TGAATAACTTAATAATTAATTAGTGATAACTTAATAGTAAAT-CA
* * * * * * *
14071579 TG-ATAATTTAGTAATCAATAACTGATAACTTAGTAATAAATCAA
1 TGAATAACTTAATAATTAATTAGTGATAACTTAATAGTAAATC-A
* * *
14071623 T-AATAACAT-AT-ATTAATT-GCATAATAATTTAATAGTAAATCA
1 TGAATAACTTAATAATTAATTAG--TGATAACTTAATAGTAAATCA
14071665 ATTACAGTAT
Statistics
Matches: 137, Mismatches: 27, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
40 1 0.01
41 9 0.07
42 15 0.11
43 30 0.22
44 79 0.58
45 3 0.02
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.34
Consensus pattern (44 bp):
TGAATAACTTAATAATTAATTAGTGATAACTTAATAGTAAATCA
Found at i:14071583 original size:66 final size:66
Alignment explanation
Indices: 14071472--14071664 Score: 176
Period size: 66 Copynumber: 3.0 Consensus size: 66
14071462 AGTAACTAGT
* * * * * *
14071472 ATAACTTAGTAG-AAATCATTGATAACTTAATAATTAATTAGTGATAACTTAATAGTAAATCA-T
1 ATAACTTAGTAGTAAATCAATGATAACATAATAATAAATGAATGATAATTTAATAGTAAATCACT
14071535 G
66 G
* * * * * * * *
14071536 AATAACTTAGTAGTAAATTAGTGATAACCTAATAGTAAATGAATGATAATTTAGTAATCAATAAC
1 -ATAACTTAGTAGTAAATCAATGATAACATAATAATAAATGAATGATAATTTAATAGTAAATCAC
14071601 TG
65 TG
* * * * * *
14071603 ATAACTTAGTAATAAATCAATAATAACAT-ATATTAATTGCATAATAATTTAATAGTAAATCA
1 ATAACTTAGTAGTAAATCAATGATAACATAATAATAAATGAATGATAATTTAATAGTAAATCA
14071665 ATTACAGTAT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
65 37 0.37
66 62 0.61
67 2 0.02
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.35
Consensus pattern (66 bp):
ATAACTTAGTAGTAAATCAATGATAACATAATAATAAATGAATGATAATTTAATAGTAAATCACT
G
Found at i:14071628 original size:22 final size:22
Alignment explanation
Indices: 14071472--14071629 Score: 115
Period size: 22 Copynumber: 7.2 Consensus size: 22
14071462 AGTAACTAGT
* *
14071472 ATAACTTAGT-AGAAATCATTG
1 ATAACTTAGTAATAAATCAATG
* * * *
14071493 ATAACTTAATAATTAATTAGTG
1 ATAACTTAGTAATAAATCAATG
* *
14071515 ATAACTTAATAGTAAATC-ATG
1 ATAACTTAGTAATAAATCAATG
* * *
14071536 AATAACTTAGTAGTAAATTAGTG
1 -ATAACTTAGTAATAAATCAATG
* * * *
14071559 ATAACCTAATAGTAAATGAATG
1 ATAACTTAGTAATAAATCAATG
* *
14071581 ATAATTTAGTAATCAAT-AACTG
1 ATAACTTAGTAATAAATCAA-TG
*
14071603 ATAACTTAGTAATAAATCAATA
1 ATAACTTAGTAATAAATCAATG
14071625 ATAAC
1 ATAAC
14071630 ATATATTAAT
Statistics
Matches: 108, Mismatches: 24, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
21 13 0.12
22 91 0.84
23 4 0.04
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (22 bp):
ATAACTTAGTAATAAATCAATG
Found at i:14072014 original size:19 final size:21
Alignment explanation
Indices: 14071954--14072139 Score: 83
Period size: 22 Copynumber: 8.5 Consensus size: 21
14071944 ATCAATATAG
*
14071954 AATAGTTAATTAGTGATAATCT
1 AATAGTAAATTA-TGATAATCT
*
14071976 AATAGTAAATTATGGATAATTT
1 AATAGTAAATTAT-GATAATCT
*
14071998 AATAGTAAATTGATAATAATACT
1 AATAGTAAATT-ATGATAAT-CT
* * * *
14072021 -GTAGTACATAATTGAAAAT-T
1 AATAGTAAATTA-TGATAATCT
* *
14072041 AAGTCGTAAATTAATGATAATAT
1 AA-TAGTAAATT-ATGATAATCT
* *
14072064 AGTAGTAAATAAAT-ATAATAC-
1 AATAGTAAAT-TATGATAAT-CT
* * *
14072085 AATAGTAAATCATTGTTAATTT
1 AATAGTAAATTA-TGATAATCT
* * *
14072107 AATAATAAATTATTAATAATTT
1 AATAGTAAATTA-TGATAATCT
*
14072129 AATAATAAATT
1 AATAGTAAATT
14072140 GATAACTTAA
Statistics
Matches: 125, Mismatches: 26, Indels: 26
0.71 0.15 0.15
Matches are distributed among these distances:
20 2 0.02
21 17 0.14
22 100 0.80
23 6 0.05
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38
Consensus pattern (21 bp):
AATAGTAAATTATGATAATCT
Found at i:14072071 original size:22 final size:22
Alignment explanation
Indices: 14071869--14072094 Score: 87
Period size: 22 Copynumber: 10.5 Consensus size: 22
14071859 TAAAATAACT
* *
14071869 TAGTAGTAAATCAATGATAATT
1 TAGTAGTAAATTAATGATAATA
* * * *
14071891 TTGTAATAAA-TAATTAATAATT
1 TAGTAGTAAATTAA-TGATAATA
* * * *
14071913 TAGTAGTTAATTACTGAAAATT
1 TAGTAGTAAATTAATGATAATA
* * *
14071935 TAATGGTAAATCAAT-ATAGA-A
1 TAGTAGTAAATTAATGATA-ATA
* *
14071956 TAGT--T-AATTAGTGATAATC
1 TAGTAGTAAATTAATGATAATA
* *
14071975 TAATAGTAAATT-ATGGATAATT
1 TAGTAGTAAATTAAT-GATAATA
* * *
14071997 TAATAGTAAATTGATAATAATA
1 TAGTAGTAAATTAATGATAATA
* *
14072019 CT-GTAGTACA-TAATTGAAAAT-
1 -TAGTAGTAAATTAA-TGATAATA
*
14072040 TAAGTCGTAAATTAATGATAATA
1 T-AGTAGTAAATTAATGATAATA
*
14072063 TAGTAGTAAATAAAT-ATAATA
1 TAGTAGTAAATTAATGATAATA
* *
14072084 CAATAGTAAAT
1 TAGTAGTAAAT
14072095 CATTGTTAAT
Statistics
Matches: 150, Mismatches: 38, Indels: 33
0.68 0.17 0.15
Matches are distributed among these distances:
18 6 0.04
19 7 0.05
20 1 0.01
21 26 0.17
22 101 0.67
23 9 0.06
ACGTcount: A:0.48, C:0.04, G:0.12, T:0.37
Consensus pattern (22 bp):
TAGTAGTAAATTAATGATAATA
Found at i:14072083 original size:21 final size:22
Alignment explanation
Indices: 14072046--14072094 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
14072036 AAATTAAGTC
* * *
14072046 GTAAATTAATGATAATATAGTA
1 GTAAATAAATGATAATACAATA
14072068 GTAAATAAAT-ATAATACAATA
1 GTAAATAAATGATAATACAATA
14072089 GTAAAT
1 GTAAAT
14072095 CATTGTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.55, C:0.02, G:0.10, T:0.33
Consensus pattern (22 bp):
GTAAATAAATGATAATACAATA
Found at i:14072125 original size:11 final size:11
Alignment explanation
Indices: 14072105--14072144 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
14072095 CATTGTTAAT
14072105 TTAATAATAAA
1 TTAATAATAAA
* *
14072116 TTATTAATAAT
1 TTAATAATAAA
14072127 TTAATAATAAA
1 TTAATAATAAA
*
14072138 TTGATAA
1 TTAATAA
14072145 CTTAATACTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (11 bp):
TTAATAATAAA
Found at i:14072144 original size:19 final size:19
Alignment explanation
Indices: 14072096--14072157 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
14072086 ATAGTAAATC
*
14072096 ATTGTTAATTTAATAATAAA
1 ATTGATAATTTAATAAT-AA
*
14072116 TTATTAATAATTTAATAATAA
1 --ATTGATAATTTAATAATAA
* *
14072137 ATTGATAACTTAATACTAA
1 ATTGATAATTTAATAATAA
14072156 AT
1 AT
14072158 CACAAATAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 18 0.51
21 2 0.06
22 15 0.43
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (19 bp):
ATTGATAATTTAATAATAA
Found at i:14072223 original size:22 final size:22
Alignment explanation
Indices: 14072085--14072223 Score: 77
Period size: 22 Copynumber: 6.5 Consensus size: 22
14072075 AATATAATAC
** *
14072085 AATAGTAAATCATTGTTAATTT
1 AATAGTAAATCATTAATAACTT
* * *
14072107 AATAATAAATTATTAATAATTT
1 AATAGTAAATCATTAATAACTT
* *
14072129 AATAAT-AA--ATTGATAACTT
1 AATAGTAAATCATTAATAACTT
* ** *
14072148 AATACTAAATCACAAATAACAT
1 AATAGTAAATCATTAATAACTT
* * *
14072170 AGTAGTAAATTAGTAATAACTT
1 AATAGTAAATCATTAATAACTT
* * * * *
14072192 AGTTGCAAATCATTGATAATTT
1 AATAGTAAATCATTAATAACTT
14072214 AATAGTAAAT
1 AATAGTAAAT
14072224 TATTTAATTA
Statistics
Matches: 88, Mismatches: 26, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
19 14 0.16
20 2 0.02
21 2 0.02
22 70 0.80
ACGTcount: A:0.49, C:0.06, G:0.07, T:0.37
Consensus pattern (22 bp):
AATAGTAAATCATTAATAACTT
Found at i:14072253 original size:96 final size:96
Alignment explanation
Indices: 14072139--14072322 Score: 212
Period size: 96 Copynumber: 1.9 Consensus size: 96
14072129 AATAATAAAT
* * * **
14072139 TGATAACTTAATACTAAATCA-CAAATAACA-TAGTAGTAAATTAGTAATAAC-TTAGTTGCAAA
1 TGATAACTTAATAATAAATAATC-AATAA-ATTAGTAGTAAATCAGTAATAACTTTA-TAACAAA
* *
14072201 TCATTGATAATTTAATAGTAAATTATTTAATTAA
63 TCATTAATAACTTAATAGTAAATTATTTAATTAA
* * * *
14072235 TGATAACTTTATAATAAATAATCGATAAATTAGTAGTAAATCAGTTATAACTTTATAATAAATCA
1 TGATAACTTAATAATAAATAATCAATAAATTAGTAGTAAATCAGTAATAACTTTATAACAAATCA
*
14072300 TTAATAACTTAGTAGTAAATTAT
66 TTAATAACTTAATAGTAAATTAT
14072323 CAACAATTTA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
95 1 0.01
96 68 0.93
97 4 0.05
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.38
Consensus pattern (96 bp):
TGATAACTTAATAATAAATAATCAATAAATTAGTAGTAAATCAGTAATAACTTTATAACAAATCA
TTAATAACTTAATAGTAAATTATTTAATTAA
Found at i:14072298 original size:22 final size:21
Alignment explanation
Indices: 14072237--14072309 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
14072227 TTAATTAATG
* *
14072237 ATAACTTTATAATAAATAATCG
1 ATAACTTTATAATAAATCAT-T
* *
14072259 ATAA-ATTAGTAGTAAATCAGTT
1 ATAACTTTA-TAATAAATCA-TT
14072281 ATAACTTTATAATAAATCATT
1 ATAACTTTATAATAAATCATT
14072302 AATAACTT
1 -ATAACTT
14072310 AGTAGTAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
21 5 0.12
22 32 0.78
23 4 0.10
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.38
Consensus pattern (21 bp):
ATAACTTTATAATAAATCATT
Found at i:14072318 original size:22 final size:22
Alignment explanation
Indices: 14072259--14072431 Score: 127
Period size: 22 Copynumber: 7.9 Consensus size: 22
14072249 TAAATAATCG
*
14072259 ATAAATTAGTAGTAAATCAGTT-
1 ATAACTTAGTAGTAAATCA-TTA
*
14072281 ATAACTTTA-TAATAAATCATTA
1 ATAAC-TTAGTAGTAAATCATTA
* *
14072303 ATAACTTAGTAGTAAATTATCA
1 ATAACTTAGTAGTAAATCATTA
* * * * *
14072325 ACAATTTAATAGTTAATCATTT
1 ATAACTTAGTAGTAAATCATTA
* * *
14072347 ATAATTTAATAGTAAATCATTC
1 ATAACTTAGTAGTAAATCATTA
* * **
14072369 ATAAATTAGTTGTAAATCATGG
1 ATAACTTAGTAGTAAATCATTA
* * *
14072391 ATAATTTATTAGCAAATCATTGA
1 ATAACTTAGTAGTAAATCATT-A
14072414 A-AACTTAGTAGTAAATCA
1 ATAACTTAGTAGTAAATCA
14072432 CTATAATATA
Statistics
Matches: 118, Mismatches: 29, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
21 5 0.04
22 109 0.92
23 4 0.03
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.38
Consensus pattern (22 bp):
ATAACTTAGTAGTAAATCATTA
Found at i:14072410 original size:66 final size:66
Alignment explanation
Indices: 14072249--14072445 Score: 180
Period size: 66 Copynumber: 3.0 Consensus size: 66
14072239 AACTTTATAA
* * * * *
14072249 TAAATAATCGATAAATTAGTAGTAAATCAGTTATAACTTT-ATAATAAATCATTAATAACTTAGT
1 TAAATAATCGATAATTTAATAGTAAATCATTTATAA-TTTAATAGTAAATCATTAATAAATTAGT
14072313 AG
65 AG
* * * * * *
14072315 TAAATTATCAACAATTTAATAGTTAATCATTTATAATTTAATAGTAAATCATTCATAAATTAGTT
1 TAAATAATCGATAATTTAATAGTAAATCATTTATAATTTAATAGTAAATCATTAATAAATTAGTA
14072380 G
66 G
* * * * * * * * *
14072381 TAAATCATGGATAATTTATTAGCAAATCATTGAAAACTTAGTAGTAAATCACTATAATATATTAG
1 TAAATAATCGATAATTTAATAGTAAATCATTTATAATTTAATAGTAAATCA-T-TAATAAATTAG
14072446 CAAATTAATA
Statistics
Matches: 104, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
65 3 0.03
66 91 0.88
67 1 0.01
68 9 0.09
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.38
Consensus pattern (66 bp):
TAAATAATCGATAATTTAATAGTAAATCATTTATAATTTAATAGTAAATCATTAATAAATTAGTA
G
Found at i:14072462 original size:43 final size:44
Alignment explanation
Indices: 14072369--14072463 Score: 106
Period size: 43 Copynumber: 2.2 Consensus size: 44
14072359 TAAATCATTC
* * * *
14072369 ATAAATTAGTTGTAAATCATGGATAATTTATTAGCAAATCATTGA
1 ATAACTTAGTAGTAAATCAT-GATAATATATTAGCAAATCAATGA
*
14072414 A-AACTTAGTAGTAAATCACT-ATAATATATTAGCAAATTAAT-A
1 ATAACTTAGTAGTAAATCA-TGATAATATATTAGCAAATCAATGA
14072456 ATAACTTA
1 ATAACTTA
14072464 ATTGTCAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 2 0.05
43 24 0.56
44 15 0.35
45 2 0.05
ACGTcount: A:0.46, C:0.08, G:0.09, T:0.36
Consensus pattern (44 bp):
ATAACTTAGTAGTAAATCATGATAATATATTAGCAAATCAATGA
Found at i:14072803 original size:22 final size:22
Alignment explanation
Indices: 14072775--14072820 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
14072765 GATAAACTTA
*
14072775 GTAGTAAATTA-TAAATAATTTG
1 GTAGTAAATGAGT-AATAATTTG
14072797 GTAGTAAATGAGTAATAATTTG
1 GTAGTAAATGAGTAATAATTTG
14072819 GT
1 GT
14072821 TGTTAATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (22 bp):
GTAGTAAATGAGTAATAATTTG
Found at i:14072882 original size:22 final size:22
Alignment explanation
Indices: 14072854--14072915 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
14072844 GTAGATGAAT
14072854 ATAACTTAATAGTAAATCATAG
1 ATAACTTAATAGTAAATCATAG
*
14072876 ATAACTTAATAGTAAATCATTG
1 ATAACTTAATAGTAAATCATAG
*
14072898 ATAATTTAATA-TAAATCA
1 ATAACTTAATAGTAAATCA
14072916 ATAATAAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
21 7 0.18
22 31 0.82
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.35
Consensus pattern (22 bp):
ATAACTTAATAGTAAATCATAG
Found at i:14072925 original size:22 final size:22
Alignment explanation
Indices: 14072854--14072922 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
14072844 GTAGATGAAT
*
14072854 ATAACTTAATAGTAAATC-ATA
1 ATAATTTAATAGTAAATCAATA
* * *
14072875 GATAACTTAATAGTAAATCATTG
1 -ATAATTTAATAGTAAATCAATA
14072898 ATAATTTAATA-TAAATCAATA
1 ATAATTTAATAGTAAATCAATA
14072919 ATAA
1 ATAA
14072923 ATTGGTATTG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
21 12 0.29
22 28 0.68
23 1 0.02
ACGTcount: A:0.52, C:0.07, G:0.06, T:0.35
Consensus pattern (22 bp):
ATAATTTAATAGTAAATCAATA
Found at i:14073299 original size:44 final size:44
Alignment explanation
Indices: 14073151--14073341 Score: 147
Period size: 44 Copynumber: 4.4 Consensus size: 44
14073141 ATCATTGATA
* * * * *
14073151 AATTTAA-AATAAATTATTTATAAATTAGTAGTCAATAAATTAT
1 AATTTAATAGTAAATCATTTATAAATTAGTAGTAAATCAATAAT
* * ** *
14073194 AACTTT-ATAATAAATTATCAATAACTTAGTAGTAAATC-ATCAAT
1 AA-TTTAATAGTAAATCATTTATAAATTAGTAGTAAATCAAT-AAT
* * * *
14073238 -AGTCAATAGTAACTCATTTATAAATTAGTAATAAATCAATAAT
1 AATTTAATAGTAAATCATTTATAAATTAGTAGTAAATCAATAAT
* * * * *
14073281 AATTTAATAGTAAATCATTGATAATTTAGTAGTAAATTATTGAT
1 AATTTAATAGTAAATCATTTATAAATTAGTAGTAAATCAATAAT
* *
14073325 AATATAAAAGTAAATCA
1 AATTTAATAGTAAATCA
14073342 ATGATAAGTT
Statistics
Matches: 116, Mismatches: 26, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
42 1 0.01
43 34 0.29
44 81 0.70
ACGTcount: A:0.49, C:0.06, G:0.07, T:0.38
Consensus pattern (44 bp):
AATTTAATAGTAAATCATTTATAAATTAGTAGTAAATCAATAAT
Found at i:14073322 original size:22 final size:22
Alignment explanation
Indices: 14073160--14073341 Score: 100
Period size: 22 Copynumber: 8.3 Consensus size: 22
14073150 AAATTTAAAA
* * *
14073160 TAAATTATTTATAAATTAGTAG
1 TAAATCATTAATAATTTAGTAG
* * *
14073182 TCAATAAATT-ATAACTTTA-TAA
1 TAAAT-CATTAATAA-TTTAGTAG
* * *
14073204 TAAATTATCAATAACTTAGTAG
1 TAAATCATTAATAATTTAGTAG
* * * *
14073226 TAAATCATCAAT-AGTCAATAG
1 TAAATCATTAATAATTTAGTAG
* * * *
14073247 TAACTCATTTATAAATTAGTAA
1 TAAATCATTAATAATTTAGTAG
* *
14073269 TAAATCAATAATAATTTAATAG
1 TAAATCATTAATAATTTAGTAG
*
14073291 TAAATCATTGATAATTTAGTAG
1 TAAATCATTAATAATTTAGTAG
* * * **
14073313 TAAATTATTGATAATATAAAAG
1 TAAATCATTAATAATTTAGTAG
14073335 TAAATCA
1 TAAATCA
14073342 ATGATAAGTT
Statistics
Matches: 121, Mismatches: 34, Indels: 10
0.73 0.21 0.06
Matches are distributed among these distances:
21 20 0.17
22 95 0.79
23 6 0.05
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (22 bp):
TAAATCATTAATAATTTAGTAG
Found at i:14073346 original size:22 final size:22
Alignment explanation
Indices: 14073242--14073369 Score: 103
Period size: 22 Copynumber: 5.8 Consensus size: 22
14073232 ATCAATAGTC
* * * *
14073242 AATAGTAACTCATTTATAAATT
1 AATAGTAAATCAATGATAATTT
* * *
14073264 AGTAATAAATCAATAATAATTT
1 AATAGTAAATCAATGATAATTT
*
14073286 AATAGTAAATCATTGATAATTT
1 AATAGTAAATCAATGATAATTT
* * * *
14073308 AGTAGTAAATTATTGATAATAT
1 AATAGTAAATCAATGATAATTT
* *
14073330 AAAAGTAAATCAATGATAAGTT
1 AATAGTAAATCAATGATAATTT
* * *
14073352 AATTGTCAATCATTGATA
1 AATAGTAAATCAATGATA
14073370 GCTTTTTTTT
Statistics
Matches: 83, Mismatches: 23, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 83 1.00
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (22 bp):
AATAGTAAATCAATGATAATTT
Found at i:14073684 original size:20 final size:20
Alignment explanation
Indices: 14073659--14073697 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14073649 TATATATATA
*
14073659 TATATATAAA-TTATCAAAAT
1 TATATAAAAAGTTA-CAAAAT
14073679 TATATAAAAAGTTACAAAA
1 TATATAAAAAGTTACAAAA
14073698 ATTACATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (20 bp):
TATATAAAAAGTTACAAAAT
Found at i:14077167 original size:24 final size:25
Alignment explanation
Indices: 14077122--14077190 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 25
14077112 GTAATACGAA
* * *
14077122 ATAAAAATAATATAA-ATAAAAAAT
1 ATAAAAATATTATAATTTAAAATAT
*
14077146 ATAAAAATATTATAATTTAAAATTTT
1 ATAAAAATATTATAATTTAAAA-TAT
14077172 ATAAAAA-ATTATATATTTA
1 ATAAAAATATTATA-ATTTA
14077191 TTTAATAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.37
25 11 0.29
26 13 0.34
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
ATAAAAATATTATAATTTAAAATAT
Found at i:14077231 original size:28 final size:28
Alignment explanation
Indices: 14077175--14077232 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
14077165 AAATTTTATA
*
14077175 AAAAATTATATATTTATTTAATAAAATT
1 AAAAATTATATATTTATATAATAAAATT
* *
14077203 AAAAA-TATATATTTTATATATTAATATT
1 AAAAATTATATA-TTTATATAATAAAATT
14077231 AA
1 AA
14077233 TATAAATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (28 bp):
AAAAATTATATATTTATATAATAAAATT
Found at i:14077252 original size:25 final size:26
Alignment explanation
Indices: 14077218--14077271 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
14077208 TATATATTTT
*
14077218 ATATATTAATATTAATATAAATTATA
1 ATATATTAATATTAATATAAAATATA
* *
14077244 ATATA-TAATTTTTATATAAAATATA
1 ATATATTAATATTAATATAAAATATA
14077269 ATA
1 ATA
14077272 CGAAAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
ATATATTAATATTAATATAAAATATA
Found at i:14084554 original size:14 final size:14
Alignment explanation
Indices: 14084535--14084566 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
14084525 GAAATGTCTA
14084535 ATTTTAATTTCTCT
1 ATTTTAATTTCTCT
*
14084549 ATTTTAATTTTTCT
1 ATTTTAATTTCTCT
14084563 ATTT
1 ATTT
14084567 AGAAGTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (14 bp):
ATTTTAATTTCTCT
Found at i:14086589 original size:3 final size:3
Alignment explanation
Indices: 14086581--14086617 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
14086571 GAGCTTTGTT
14086581 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14086618 ATTTTTATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14094557 original size:21 final size:20
Alignment explanation
Indices: 14094511--14094584 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
14094501 TTGAGCAACC
14094511 GATCGATCCCTTTAAGAGGG
1 GATCGATCCCTTTAAGAGGG
* * *
14094531 GATCGATCCCTTTCCATAGGT
1 GATCGATCCCTTT-AAGAGGG
* * *
14094552 GATCGATCTC-TTACGTGGG
1 GATCGATCCCTTTAAGAGGG
14094571 CGATCGATCCCTTT
1 -GATCGATCCCTTT
14094585 TCTGGAAAAT
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
19 2 0.05
20 24 0.59
21 15 0.37
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (20 bp):
GATCGATCCCTTTAAGAGGG
Found at i:14097030 original size:21 final size:21
Alignment explanation
Indices: 14097006--14097045 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14096996 AAGTTTTACT
14097006 TATAATTAAGTATTACATCTA
1 TATAATTAAGTATTACATCTA
*
14097027 TATAATTAATTATTACATC
1 TATAATTAAGTATTACATC
14097046 ATTGAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.03, T:0.45
Consensus pattern (21 bp):
TATAATTAAGTATTACATCTA
Found at i:14098858 original size:3 final size:3
Alignment explanation
Indices: 14098850--14098876 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14098840 GAGCAATTGT
14098850 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
14098877 CAGAAAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14100711 original size:12 final size:11
Alignment explanation
Indices: 14100693--14100731 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
14100683 CAGCGGAAGC
14100693 AAAATCAAACA
1 AAAATCAAACA
14100704 ATAAATCAAACAA
1 A-AAATCAAAC-A
14100717 AAAAT-AAACA
1 AAAATCAAACA
14100727 AAAAT
1 AAAAT
14100732 TTAACGTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 6 0.23
11 5 0.19
12 13 0.50
13 2 0.08
ACGTcount: A:0.74, C:0.13, G:0.00, T:0.13
Consensus pattern (11 bp):
AAAATCAAACA
Found at i:14101230 original size:52 final size:52
Alignment explanation
Indices: 14101141--14101297 Score: 215
Period size: 52 Copynumber: 3.0 Consensus size: 52
14101131 TATAACCATA
* * * * *
14101141 CAAACTTACCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTGTAAGT
1 CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
* * * *
14101193 TAAATTTGCCTATTAAGAATCTCTTTCCTTTTAGAATTCTTCTTTTGCAAGT
1 CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
* *
14101245 CAAACTTACCTATTAGGAATCTCTTTTCTCTTAGAATTCTTCTTTTGCAAGT
1 CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
14101297 C
1 C
14101298 TTCTTGTCCA
Statistics
Matches: 90, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 90 1.00
ACGTcount: A:0.25, C:0.23, G:0.09, T:0.43
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
Found at i:14101338 original size:11 final size:11
Alignment explanation
Indices: 14101322--14101361 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
14101312 GCAATATCTT
14101322 ACAAATCCCAA
1 ACAAATCCCAA
* *
14101333 ACAAATCTCTA
1 ACAAATCCCAA
*
14101344 ACAAATCCTAA
1 ACAAATCCCAA
14101355 ACAAATC
1 ACAAATC
14101362 TCTTATGGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.17
Consensus pattern (11 bp):
ACAAATCCCAA
Found at i:14101347 original size:22 final size:22
Alignment explanation
Indices: 14101322--14101364 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14101312 GCAATATCTT
14101322 ACAAATCCCAAACAAATCTCTA
1 ACAAATCCCAAACAAATCTCTA
*
14101344 ACAAATCCTAAACAAATCTCT
1 ACAAATCCCAAACAAATCTCT
14101365 TATGGAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (22 bp):
ACAAATCCCAAACAAATCTCTA
Found at i:14101654 original size:25 final size:25
Alignment explanation
Indices: 14101626--14101689 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
14101616 TCGAACTGTC
14101626 AACTCTTCCCATGTCTCGAATCA-TT
1 AACTCTTCCCATGTCTCGAA-CATTT
* **
14101651 AACTCTTCTCACATCTCGAACATTT
1 AACTCTTCCCATGTCTCGAACATTT
*
14101676 GACTCTTCCCATGT
1 AACTCTTCCCATGT
14101690 TTCAAACTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
24 2 0.06
25 29 0.94
ACGTcount: A:0.23, C:0.33, G:0.08, T:0.36
Consensus pattern (25 bp):
AACTCTTCCCATGTCTCGAACATTT
Found at i:14101735 original size:31 final size:31
Alignment explanation
Indices: 14101700--14101784 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
14101690 TTCAAACTTT
*
14101700 CAGCTCTGATACCACTTGTTGGGGAACACCA
1 CAGCTCTGATACCACTTGTTGGGAAACACCA
*
14101731 CAGCTCTGATACCACTTGTTGAGAAACACCA
1 CAGCTCTGATACCACTTGTTGGGAAACACCA
*
14101762 CAGCTCTGATACCATTTGTTGGG
1 CAGCTCTGATACCACTTGTTGGG
14101785 CTAAAGCCTC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (31 bp):
CAGCTCTGATACCACTTGTTGGGAAACACCA
Done.