Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 76 of 147
Found at i:14102327 original size:52 final size:52
Alignment explanation
Indices: 14102255--14102411 Score: 224
Period size: 52 Copynumber: 3.0 Consensus size: 52
14102245 TGTAACCATA
* * * * *
14102255 CAAACTTACCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTGTAAGT
1 CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
* * * *
14102307 TAAATTTGCCTATTAAGAATCTCTTTCCTTTTAGAATTCTTCTTTTGCAAGT
1 CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
*
14102359 CAAACTTACCTATTAAGAATCTCTTTTCTCTTAGAATTCTTCTTTTGCAAGT
1 CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
14102411 C
1 C
14102412 TTCTTGTCCA
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 91 1.00
ACGTcount: A:0.26, C:0.23, G:0.08, T:0.43
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
Found at i:14104878 original size:26 final size:26
Alignment explanation
Indices: 14104829--14104879 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14104819 ATTCTCAACC
* * *
14104829 CAAACATACACATACCTATATGCACA
1 CAAACAAACACATACCCAGATGCACA
*
14104855 CAAACAAACACATACCCAGGTGCAC
1 CAAACAAACACATACCCAGATGCAC
14104880 CCATGCATCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.45, C:0.33, G:0.08, T:0.14
Consensus pattern (26 bp):
CAAACAAACACATACCCAGATGCACA
Found at i:14116029 original size:13 final size:13
Alignment explanation
Indices: 14116011--14116035 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14116001 CATTTTCAAA
14116011 AAAATAAATAAAT
1 AAAATAAATAAAT
14116024 AAAATAAATAAA
1 AAAATAAATAAA
14116036 AGATGTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:14117270 original size:2 final size:2
Alignment explanation
Indices: 14117259--14117296 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
14117249 ATTGTGAAGT
*
14117259 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14117297 CTTAGAGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:14120834 original size:14 final size:14
Alignment explanation
Indices: 14120815--14120845 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14120805 GAAATGTCTA
14120815 ATTTTAATTTCTCT
1 ATTTTAATTTCTCT
*
14120829 ATTTTAATTTTTCT
1 ATTTTAATTTCTCT
14120843 ATT
1 ATT
14120846 CAGAAGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.68
Consensus pattern (14 bp):
ATTTTAATTTCTCT
Found at i:14126596 original size:37 final size:37
Alignment explanation
Indices: 14126555--14126628 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
14126545 AAAAACCAAT
14126555 TCATAAGGCTAGACCCCACTTTTCTAACAATATCATC
1 TCATAAGGCTAGACCCCACTTTTCTAACAATATCATC
14126592 TCATAAGGCTAGACCCCACTTTTCTAACAATATCATC
1 TCATAAGGCTAGACCCCACTTTTCTAACAATATCATC
14126629 ATTATATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.30, G:0.08, T:0.30
Consensus pattern (37 bp):
TCATAAGGCTAGACCCCACTTTTCTAACAATATCATC
Found at i:14127594 original size:3 final size:3
Alignment explanation
Indices: 14127588--14127627 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
14127578 ATCATGAGGT
14127588 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14127628 ATAATTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14137008 original size:16 final size:16
Alignment explanation
Indices: 14136987--14137020 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14136977 TCAACCAAAA
14136987 TTTTATTTTTTATTTT
1 TTTTATTTTTTATTTT
*
14137003 TTTTATTTTTTCTTTT
1 TTTTATTTTTTATTTT
14137019 TT
1 TT
14137021 AATTGAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTATTTTTTATTTT
Found at i:14137296 original size:19 final size:19
Alignment explanation
Indices: 14137250--14137297 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
14137240 ATACTAAAGG
*
14137250 AAAAAACAAACACAAAAAT
1 AAAAAAAAAACACAAAAAT
** * *
14137269 AAATTAAAAATACCAAAAT
1 AAAAAAAAAACACAAAAAT
14137288 AAAAAAAAAA
1 AAAAAAAAAA
14137298 AGATGAAATG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.79, C:0.10, G:0.00, T:0.10
Consensus pattern (19 bp):
AAAAAAAAAACACAAAAAT
Found at i:14138383 original size:21 final size:21
Alignment explanation
Indices: 14138356--14138420 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
14138346 ATTAATATAT
14138356 AATTTAGTAGTAAATAATTGA
1 AATTTAGTAGTAAATAATTGA
* * *
14138377 TATTTAGTAGTTAATTATTGA
1 AATTTAGTAGTAAATAATTGA
**
14138398 AATTTTAAAAGTAAATCAATTGA
1 AA-TTTAGTAGTAAAT-AATTGA
14138421 GAATAATTCA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
21 19 0.56
22 10 0.29
23 5 0.15
ACGTcount: A:0.45, C:0.02, G:0.12, T:0.42
Consensus pattern (21 bp):
AATTTAGTAGTAAATAATTGA
Found at i:14138706 original size:22 final size:21
Alignment explanation
Indices: 14138681--14138741 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
14138671 TTACTCAATG
14138681 ATAATTTTATAATAAATAATCT
1 ATAA-TTTATAATAAATAATCT
* * *
14138703 ATAAATTAGAAGTAAATCATCT
1 ATAATTTATAA-TAAATAATCT
*
14138725 ATGACTTTATAATAAAT
1 AT-AATTTATAATAAAT
14138742 TATTAGCAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
21 5 0.16
22 20 0.65
23 6 0.19
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.39
Consensus pattern (21 bp):
ATAATTTATAATAAATAATCT
Found at i:14138797 original size:22 final size:22
Alignment explanation
Indices: 14138771--14139071 Score: 166
Period size: 22 Copynumber: 13.7 Consensus size: 22
14138761 ACAATTCAAA
*
14138771 AGTAAATCATTTATAACTTAAT
1 AGTAAATCATTGATAACTTAAT
* * * *
14138793 GGTAAATCATTTATAAATTATT
1 AGTAAATCATTGATAACTTAAT
* *
14138815 AGTTAATCATTGATAACCTAAT
1 AGTAAATCATTGATAACTTAAT
* * *
14138837 AGTAAATCAATGATAATTTAGT
1 AGTAAATCATTGATAACTTAAT
*
14138859 AGCAAATCAGTT--TCAACTTAAT
1 AGTAAATCA-TTGAT-AACTTAAT
* *
14138881 AGTAATTAATTGATAAGCTTAAT
1 AGTAAATCATTGATAA-CTTAAT
**
14138904 AGTAAATCATAAATAACTTAAT
1 AGTAAATCATTGATAACTTAAT
* * * * * *
14138926 AATAAATGAATAATAATTTAGT
1 AGTAAATCATTGATAACTTAAT
* * * *
14138948 AATTAATCATTGAAAACTTAAA
1 AGTAAATCATTGATAACTTAAT
* * *
14138970 AATAAATCAAT-ATAA-TGTAGT
1 AGTAAATCATTGATAACT-TAAT
* *
14138991 AGTAAATCATTTATGACTTAAT
1 AGTAAATCATTGATAACTTAAT
* * *
14139013 GGTTAATCAATGATAA-TTGAAT
1 AGTAAATCATTGATAACTT-AAT
* * *
14139035 -GATAAATCATAGATAATTTACT
1 AG-TAAATCATTGATAACTTAAT
*
14139057 A-TAAATCAATGATAA
1 AGTAAATCATTGATAA
14139072 ACTGATATTG
Statistics
Matches: 208, Mismatches: 59, Indels: 25
0.71 0.20 0.09
Matches are distributed among these distances:
20 1 0.00
21 32 0.15
22 152 0.73
23 23 0.11
ACGTcount: A:0.47, C:0.08, G:0.09, T:0.36
Consensus pattern (22 bp):
AGTAAATCATTGATAACTTAAT
Found at i:14138867 original size:44 final size:44
Alignment explanation
Indices: 14138771--14139071 Score: 227
Period size: 44 Copynumber: 6.9 Consensus size: 44
14138761 ACAATTCAAA
* * * * * *
14138771 AGTAAATCATTTATAACTTAATGGTAAATCATTTATAAATTATT
1 AGTAAATCATTGATAACTTAATAGTAAATCAATGATAATTTAGT
* *
14138815 AGTTAATCATTGATAACCTAATAGTAAATCAATGATAATTTAGT
1 AGTAAATCATTGATAACTTAATAGTAAATCAATGATAATTTAGT
* * * *
14138859 AGCAAATCAGTT--TCAACTTAATAGT-AATTAATTGATAAGCTTAAT
1 AGTAAATCA-TTGAT-AACTTAATAGTAAATCAA-TGATAA-TTTAGT
** * * *
14138904 AGTAAATCATAAATAACTTAATAATAAATGAATAATAATTTAGT
1 AGTAAATCATTGATAACTTAATAGTAAATCAATGATAATTTAGT
* * * * * *
14138948 AATTAATCATTGAAAACTTAAAAATAAATCAAT-ATAATGTAGT
1 AGTAAATCATTGATAACTTAATAGTAAATCAATGATAATTTAGT
* * * * * *
14138991 AGTAAATCATTTATGACTTAATGGTTAATCAATGATAATTGAAT
1 AGTAAATCATTGATAACTTAATAGTAAATCAATGATAATTTAGT
* * *
14139035 -GATAAATCATAGATAATTTACTA-TAAATCAATGATAA
1 AG-TAAATCATTGATAACTTAATAGTAAATCAATGATAA
14139072 ACTGATATTG
Statistics
Matches: 200, Mismatches: 48, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
43 53 0.26
44 112 0.56
45 29 0.14
46 6 0.03
ACGTcount: A:0.47, C:0.08, G:0.09, T:0.36
Consensus pattern (44 bp):
AGTAAATCATTGATAACTTAATAGTAAATCAATGATAATTTAGT
Found at i:14138919 original size:23 final size:22
Alignment explanation
Indices: 14138873--14138938 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 22
14138863 AATCAGTTTC
* **
14138873 AACTTAATAGTAATTAATTGAT
1 AACTTAATAGTAAATAATAAAT
*
14138895 AAGCTTAATAGTAAATCATAAAT
1 AA-CTTAATAGTAAATAATAAAT
*
14138918 AACTTAATAATAAATGAATAA
1 AACTTAATAGTAAAT-AATAA
14138939 TAATTTAGTA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
22 14 0.39
23 22 0.61
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (22 bp):
AACTTAATAGTAAATAATAAAT
Found at i:14138991 original size:43 final size:44
Alignment explanation
Indices: 14138918--14139001 Score: 116
Period size: 43 Copynumber: 1.9 Consensus size: 44
14138908 AATCATAAAT
* * * *
14138918 AACTTAATAATAAATGAATAATAATTTAGTAATTAATCATTGAA
1 AACTTAAAAATAAATCAATAATAATGTAGTAATAAATCATTGAA
*
14138962 AACTTAAAAATAAATCAAT-ATAATGTAGTAGTAAATCATT
1 AACTTAAAAATAAATCAATAATAATGTAGTAATAAATCATT
14139002 TATGACTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 18 0.51
44 17 0.49
ACGTcount: A:0.52, C:0.06, G:0.07, T:0.35
Consensus pattern (44 bp):
AACTTAAAAATAAATCAATAATAATGTAGTAATAAATCATTGAA
Found at i:14139453 original size:22 final size:22
Alignment explanation
Indices: 14139428--14139519 Score: 71
Period size: 22 Copynumber: 4.2 Consensus size: 22
14139418 TAACTCATTC
*
14139428 ATAAATTAGCAGTAAATTAATG
1 ATAAATTAGTAGTAAATTAATG
* * * *
14139450 ATAATTTATTAGTAAATCATTG
1 ATAAATTAGTAGTAAATTAATG
* * *
14139472 ATAATTTAGTAATAAA-TAATTA
1 ATAAATTAGTAGTAAATTAA-TG
*
14139494 ATAACA-TAATAGTAAATTAATG
1 ATAA-ATTAGTAGTAAATTAATG
14139516 ATAA
1 ATAA
14139520 TTTAATTATC
Statistics
Matches: 53, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
21 1 0.02
22 49 0.92
23 3 0.06
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (22 bp):
ATAAATTAGTAGTAAATTAATG
Found at i:14139488 original size:44 final size:44
Alignment explanation
Indices: 14139408--14139523 Score: 108
Period size: 44 Copynumber: 2.6 Consensus size: 44
14139398 ATTCATCAAC
* * * * * *
14139408 AATTTAGTAGTAACTCATTCATAAATTAGCAGTAAATTAA-TGAT
1 AATTTAATAGTAAATCATTGATAATTTAGCAATAAA-TAATTAAT
* *
14139452 AATTTATTAGTAAATCATTGATAATTTAGTAATAAATAATTAAT
1 AATTTAATAGTAAATCATTGATAATTTAGCAATAAATAATTAAT
** * *
14139496 AACATAATAGTAAATTAATGATAATTTA
1 AATTTAATAGTAAATCATTGATAATTTA
14139524 ATTATCAATC
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 3 0.05
44 56 0.95
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.39
Consensus pattern (44 bp):
AATTTAATAGTAAATCATTGATAATTTAGCAATAAATAATTAAT
Found at i:14139525 original size:22 final size:22
Alignment explanation
Indices: 14139438--14139525 Score: 88
Period size: 22 Copynumber: 4.0 Consensus size: 22
14139428 ATAAATTAGC
*
14139438 AGTAAATTAATGATAATTTATT
1 AGTAAATTAATGATAATTTAAT
* * *
14139460 AGTAAATCATTGATAATTTAGT
1 AGTAAATTAATGATAATTTAAT
* * **
14139482 AATAAA-TAATTAATAACATAAT
1 AGTAAATTAA-TGATAATTTAAT
14139504 AGTAAATTAATGATAATTTAAT
1 AGTAAATTAATGATAATTTAAT
14139526 TATCAATCAT
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
21 1 0.02
22 46 0.92
23 3 0.06
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (22 bp):
AGTAAATTAATGATAATTTAAT
Found at i:14139539 original size:22 final size:23
Alignment explanation
Indices: 14139438--14139541 Score: 81
Period size: 22 Copynumber: 4.7 Consensus size: 23
14139428 ATAAATTAGC
* *
14139438 AGTAAATTAATGATAATTT-ATT
1 AGTAAATCATTGATAATTTAATT
*
14139460 AGTAAATCATTGATAATTT-AGT
1 AGTAAATCATTGATAATTTAATT
* * * **
14139482 AATAAATAATTAATAACATAA-T
1 AGTAAATCATTGATAATTTAATT
* *
14139504 AGTAAATTAATGATAATTTAATT
1 AGTAAATCATTGATAATTTAATT
*
14139527 A-TCAATCATTGATAA
1 AGTAAATCATTGATAA
14139542 CATTTTATAT
Statistics
Matches: 63, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
22 60 0.95
23 3 0.05
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.39
Consensus pattern (23 bp):
AGTAAATCATTGATAATTTAATT
Found at i:14139542 original size:44 final size:44
Alignment explanation
Indices: 14139459--14139544 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 44
14139449 GATAATTTAT
* *
14139459 TAGTAAATCATTGATAATTTAGTAATAAATAATTAATAACATAA
1 TAGTAAATCAATGATAATTTAATAATAAATAATTAATAACATAA
* * * * *
14139503 TAGTAAATTAATGATAATTTAATTATCAATCATTGATAACAT
1 TAGTAAATCAATGATAATTTAATAATAAATAATTAATAACAT
14139545 TTTATATATA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.49, C:0.06, G:0.07, T:0.38
Consensus pattern (44 bp):
TAGTAAATCAATGATAATTTAATAATAAATAATTAATAACATAA
Found at i:14140105 original size:3 final size:3
Alignment explanation
Indices: 14140097--14140140 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
14140087 TATATTCCAA
14140097 AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14140141 TATTATTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:14140126 original size:20 final size:20
Alignment explanation
Indices: 14140101--14140140 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
14140091 TTCCAAAATA
14140101 ATAATAATAATAATAATAAT
1 ATAATAATAATAATAATAAT
14140121 ATAATAATAATAATAATAAT
1 ATAATAATAATAATAATAAT
14140141 TATTATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAATAATAATAATAATAAT
Found at i:14140164 original size:21 final size:20
Alignment explanation
Indices: 14140135--14140174 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
14140125 TAATAATAAT
*
14140135 AATAATTATTATTATTAAAAA
1 AATAATTATTA-AATTAAAAA
*
14140156 AATATTTATTAAATTAAAA
1 AATAATTATTAAATTAAAA
14140175 TTTTAAAGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
AATAATTATTAAATTAAAAA
Found at i:14140641 original size:2 final size:2
Alignment explanation
Indices: 14140624--14140658 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
14140614 TATAATAGAG
* *
14140624 AT AT TT AT AT AG AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14140659 GTTTGTCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14151246 original size:356 final size:356
Alignment explanation
Indices: 14150616--14151315 Score: 1028
Period size: 356 Copynumber: 2.0 Consensus size: 356
14150606 TTTTCTACAG
* *
14150616 TAAAATACCTTCAATATACCACGATGGTTATAGAAGGTATTTATTCAAAAATATGCCTTCAATAT
1 TAAAATACCTTCAATATACCACAATGGTTATAGAAGGCATTTATTCAAAAATATGCCTTCAATAT
14150681 ACCTTTAAACTTAGTAATCCATTACGGAAGGTGTTTGTTAATAATAGACGCCTTCAATATTTTTC
66 ACCTTTAAACTTAGTAATCCATTACGGAAGGTGTTTGTTAATAATAGACGCCTTCAATATTTTTC
* ** * * * * *
14150746 TTCTAAAAATTTTGGGCATTATTAAAGGTATCTTTTACTGTAAAATGCTTTCAATATACCACCAC
131 TTCAAAAAATTTTAAGAATTATTAAAGGCATCTTTTACCGTAAAATGCCTTCAATATAACACCAC
* * *
14150811 ACAAATTTTAACACGGTTATTGAAGGCGTATATTCAAGAAAAATGCTTTTAATAATTCCTATTAG
196 ACAAATTTTAACACGGTTATTAAAGGCGCATATTCAAGAAAAATGCCTTTAATAATTCCTATTAG
* * * ** * * *
14150876 ATTTTGCAGATAATTAGTGAAGGCGTTTGTAGATAACAATGCCTTTAATAATTTTTTTTAAAAAA
261 ATTTTGCAGATAATTAGTGAAGGCATTTGCAAATAACAACACCTTCAATAATTTTCTTAAAAAAA
*
14150941 ATTTTAGGATTATTAAAGGCATTTTTTATTA
326 AATTTAGGATTATTAAAGGCATTTTTTATTA
* * *
14150972 TAAAATGCCTTTAATATACCATAATGGTTATAGAAGGCATTTATTCAAAAA-A-GCACCTTCAAT
1 TAAAATACCTTCAATATACCACAATGGTTATAGAAGGCATTTATTCAAAAATATG--CCTTCAAT
* * *
14151035 ATATCTTTAAATTTAGTAATCCATTACTGAAGGTGTTTGTTAATAATAGACGCCTTCAATATTTT
64 ATACCTTTAAACTTAGTAATCCATTACGGAAGGTGTTTGTTAATAATAGACGCCTTCAATATTTT
* **
14151100 TCCTT-AAAAAATTTTAAGAATTATTAAAGGCGTCTTTTACCGTAAAATGCCTTCAATATAATGC
129 T-CTTCAAAAAATTTTAAGAATTATTAAAGGCATCTTTTACCGTAAAATGCCTTCAATATAACAC
* *
14151164 CTCACAAATTTTAACACGGTTATTAAAGGTGCATATTCAAGAAAAATGCCTTTAATAATTCCTAT
193 CACACAAATTTTAACACGGTTATTAAAGGCGCATATTCAAGAAAAATGCCTTTAATAATTCCTAT
**
14151229 TAGATTTTGTTGATAATTAGTGAAGGCATTTGCAAATAACAACACCTTCAATAATTTTCTTAAAA
258 TAGATTTTGCAGATAATTAGTGAAGGCATTTGCAAATAACAACACCTTCAATAATTTTCTTAAAA
*
14151294 AAAAATTTGGGATTATTAAAGG
323 AAAAATTTAGGATTATTAAAGG
14151316 TGTCTTTTAT
Statistics
Matches: 305, Mismatches: 36, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
354 1 0.00
355 1 0.00
356 300 0.98
357 3 0.01
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (356 bp):
TAAAATACCTTCAATATACCACAATGGTTATAGAAGGCATTTATTCAAAAATATGCCTTCAATAT
ACCTTTAAACTTAGTAATCCATTACGGAAGGTGTTTGTTAATAATAGACGCCTTCAATATTTTTC
TTCAAAAAATTTTAAGAATTATTAAAGGCATCTTTTACCGTAAAATGCCTTCAATATAACACCAC
ACAAATTTTAACACGGTTATTAAAGGCGCATATTCAAGAAAAATGCCTTTAATAATTCCTATTAG
ATTTTGCAGATAATTAGTGAAGGCATTTGCAAATAACAACACCTTCAATAATTTTCTTAAAAAAA
AATTTAGGATTATTAAAGGCATTTTTTATTA
Found at i:14155363 original size:3 final size:3
Alignment explanation
Indices: 14155355--14155408 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
14155345 ATTTTCTATC
14155355 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14155403 ATA ATA
1 ATA ATA
14155409 TTATTATTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14155413 original size:3 final size:3
Alignment explanation
Indices: 14155407--14155461 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
14155397 ATAATAATAA
14155407 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14155455 TAT TAT T
1 TAT TAT T
14155462 CATGTATCGA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14157629 original size:2 final size:2
Alignment explanation
Indices: 14157622--14157649 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14157612 TTAGAGACAA
14157622 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14157650 CGGGAAGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14158884 original size:14 final size:15
Alignment explanation
Indices: 14158865--14158894 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
14158855 TACAGAGTGC
14158865 TCATAGATGGG-TTT
1 TCATAGATGGGCTTT
14158879 TCATAGATGGGCTTT
1 TCATAGATGGGCTTT
14158894 T
1 T
14158895 GAAGTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.27, T:0.43
Consensus pattern (15 bp):
TCATAGATGGGCTTT
Found at i:14165074 original size:7 final size:7
Alignment explanation
Indices: 14165062--14165094 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
14165052 CTAATTTTTT
14165062 ATCATAA
1 ATCATAA
14165069 ATCATAA
1 ATCATAA
14165076 ATCATAA
1 ATCATAA
14165083 ATCATAA
1 ATCATAA
14165090 ATCAT
1 ATCAT
14165095 GTAGAGCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (7 bp):
ATCATAA
Found at i:14165895 original size:30 final size:29
Alignment explanation
Indices: 14165839--14165895 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
14165829 TTTCATCCTA
*
14165839 TTTTCTATTTTGATTTGATTTGATTTTAC
1 TTTTCTATTTTGATTTCATTTGATTTTAC
*
14165868 TTTTCCTATTTT-ATTTTCATTTTATTTT
1 TTTT-CTATTTTGA-TTTCATTTGATTTT
14165896 TAGATTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.16, C:0.09, G:0.05, T:0.70
Consensus pattern (29 bp):
TTTTCTATTTTGATTTCATTTGATTTTAC
Found at i:14165918 original size:13 final size:12
Alignment explanation
Indices: 14165875--14165946 Score: 58
Period size: 13 Copynumber: 5.8 Consensus size: 12
14165865 TACTTTTCCT
*
14165875 ATTTTA-TTTTC
1 ATTTTATTTTTA
14165886 ATTTTATTTTTA
1 ATTTTATTTTTA
14165898 GATTTTATTTTTA
1 -ATTTTATTTTTA
* *
14165911 CTTATTATTATT-
1 ATT-TTATTTTTA
*
14165923 ATTTTCATCTTTA
1 ATTTT-ATTTTTA
14165936 ATTATTATTTT
1 ATT-TTATTTT
14165947 ATTCATGACT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
11 8 0.17
12 12 0.25
13 26 0.54
14 2 0.04
ACGTcount: A:0.24, C:0.06, G:0.01, T:0.69
Consensus pattern (12 bp):
ATTTTATTTTTA
Found at i:14165940 original size:25 final size:23
Alignment explanation
Indices: 14165874--14165949 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 23
14165864 TTACTTTTCC
*
14165874 TATTTTAT-TTTCATT-TTATTTT
1 TATTTTATCTTTAATTATTA-TTT
* *
14165896 TAGATTTTATTTTTACTTATTATTAT
1 T--ATTTTATCTTTAATTATTATT-T
14165922 TATTTTCATCTTTAATTATTATTT
1 TATTTT-ATCTTTAATTATTATTT
14165946 TATT
1 TATT
14165950 CATGACTTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
22 1 0.02
24 17 0.39
25 21 0.48
26 5 0.11
ACGTcount: A:0.24, C:0.05, G:0.01, T:0.70
Consensus pattern (23 bp):
TATTTTATCTTTAATTATTATTT
Found at i:14166970 original size:26 final size:25
Alignment explanation
Indices: 14166925--14166973 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
14166915 CCTTGTTTGT
* *
14166925 ATTTTATTTATTTATTCATTTATTC
1 ATTTTATATATTCATTCATTTATTC
14166950 ATTTTATATATGTCATTCATTTAT
1 ATTTTATATAT-TCATTCATTTAT
14166974 ACATGTATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (25 bp):
ATTTTATATATTCATTCATTTATTC
Found at i:14166972 original size:17 final size:18
Alignment explanation
Indices: 14166946--14166979 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14166936 TTATTCATTT
*
14166946 ATTCATTTTATATATGTC
1 ATTCATTTTATACATGTC
14166964 ATTCA-TTTATACATGT
1 ATTCATTTTATACATGT
14166980 ATACCATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (18 bp):
ATTCATTTTATACATGTC
Found at i:14173446 original size:22 final size:23
Alignment explanation
Indices: 14173405--14173447 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
14173395 AAGAAAATGA
*
14173405 AAAAATAAAAAAAAGTAAAAAGT
1 AAAAATAAAAAAAAGAAAAAAGT
*
14173428 AAAAA-AAAAAAGAGAAAAAA
1 AAAAATAAAAAAAAGAAAAAA
14173448 TGAATATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.84, C:0.00, G:0.09, T:0.07
Consensus pattern (23 bp):
AAAAATAAAAAAAAGAAAAAAGT
Found at i:14174316 original size:6 final size:6
Alignment explanation
Indices: 14174305--14174364 Score: 50
Period size: 6 Copynumber: 9.7 Consensus size: 6
14174295 AATATTATTT
* * * *
14174305 TAAATA TAAATA TAAA-A TTAAATA TATATA TATATA AAAATA TATATAA
1 TAAATA TAAATA TAAATA -TAAATA TAAATA TAAATA TAAATA TAAAT-A
14174354 TTAAATA TAAA
1 -TAAATA TAAA
14174365 ATTAAAAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
5 1 0.02
6 36 0.82
7 3 0.07
8 4 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (6 bp):
TAAATA
Found at i:14174339 original size:22 final size:22
Alignment explanation
Indices: 14174308--14174370 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
14174298 ATTATTTTAA
14174308 ATATAAATATAAAATTAAATAT
1 ATATAAATATAAAATTAAATAT
* * *
14174330 ATATATATATAAAAATATATAT
1 ATATAAATATAAAATTAAATAT
14174352 A-ATTAAATATAAAATTAAA
1 ATA-TAAATATAAAATTAAA
14174371 AAAATAATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 1 0.03
22 33 0.97
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
ATATAAATATAAAATTAAATAT
Found at i:14174342 original size:16 final size:16
Alignment explanation
Indices: 14174308--14174362 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
14174298 ATTATTTTAA
14174308 ATATAAATATA-A-A-
1 ATATAAATATATATAT
14174321 AT-TAAATATATATAT
1 ATATAAATATATATAT
*
14174336 ATATAAAAATATATAT
1 ATATAAATATATATAT
14174352 A-ATTAAATATA
1 ATA-TAAATATA
14174363 AAATTAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
12 8 0.23
13 3 0.09
14 1 0.03
15 3 0.09
16 20 0.57
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAATATATATAT
Found at i:14174367 original size:12 final size:12
Alignment explanation
Indices: 14174306--14174370 Score: 57
Period size: 12 Copynumber: 5.7 Consensus size: 12
14174296 ATATTATTTT
14174306 AAATATAAATATA
1 AAAT-TAAATATA
14174319 AAATTAAATAT-
1 AAATTAAATATA
* *
14174330 ATA-TATATATA
1 AAATTAAATATA
*
14174341 AAA--ATATATA
1 AAATTAAATATA
*
14174351 TAATTAAATATA
1 AAATTAAATATA
14174363 AAATTAAA
1 AAATTAAA
14174371 AAAATAATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
10 15 0.35
11 4 0.09
12 20 0.47
13 4 0.09
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
AAATTAAATATA
Found at i:14174665 original size:24 final size:25
Alignment explanation
Indices: 14174611--14174672 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
14174601 TTGTGATAAT
14174611 TGCATTTGCATCATTGTTGGGGAACA
1 TGCATTTGCATCATTGTT-GGGAACA
* *
14174637 T--ATTTACATCATTGTT-GGAGCA
1 TGCATTTGCATCATTGTTGGGAACA
14174659 TGCATTTGCATCAT
1 TGCATTTGCATCAT
14174673 GTAAAGAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
22 6 0.19
24 24 0.77
26 1 0.03
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (25 bp):
TGCATTTGCATCATTGTTGGGAACA
Found at i:14175001 original size:45 final size:45
Alignment explanation
Indices: 14174950--14175204 Score: 221
Period size: 45 Copynumber: 5.7 Consensus size: 45
14174940 TTGGATGCAA
* * * * *
14174950 AATCCTAAAGTTTTTTTAATGTGAATATTTGAAATTTTAAATATG
1 AATCCTAAAATTTTTTAAATGAGAATCTTTGAAATTTTAAATGTG
* * * *
14174995 AATCCTAAAA-TTTTTCAATGAAAATCTTT-AACTTTTAGATGTG
1 AATCCTAAAATTTTTTAAATGAGAATCTTTGAAATTTTAAATGTG
* * * * *
14175038 AATCCCAAAATTTTTCAAATGAGAATTTTTGAAATTTCAAATGTA
1 AATCCTAAAATTTTTTAAATGAGAATCTTTGAAATTTTAAATGTG
* * ** *
14175083 AATCTTAAAATTTTTTAAATGTGAATCTTTGAAATTTCGAATGTA
1 AATCCTAAAATTTTTTAAATGAGAATCTTTGAAATTTTAAATGTG
* * * * * *
14175128 AATCCCAAAA-TTTTTGAATGAAAATCTTT-AACTTTTGAATATG
1 AATCCTAAAATTTTTTAAATGAGAATCTTTGAAATTTTAAATGTG
* * *
14175171 AGACCCTAAAATTTTTCAAATAAGAATCTTTGAA
1 A-ATCCTAAAATTTTTTAAATGAGAATCTTTGAA
14175205 CGTTGAAATT
Statistics
Matches: 167, Mismatches: 38, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
43 31 0.19
44 53 0.32
45 81 0.49
46 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.41
Consensus pattern (45 bp):
AATCCTAAAATTTTTTAAATGAGAATCTTTGAAATTTTAAATGTG
Found at i:14175097 original size:133 final size:135
Alignment explanation
Indices: 14174916--14175204 Score: 363
Period size: 133 Copynumber: 2.2 Consensus size: 135
14174906 TTAAATGAGC
* *** * *
14174916 TTTTCAAATGAG-ATTTTTTAAATTTTGGATGCAAAATCCTAAAGTTTTTTTAATGTGAATATTT
1 TTTTCAAATGAGAATTTTTGAAATTTCAAATGCAAAATCCTAAAATTTTTTAAATGTGAATATTT
* * * *
14174980 GAAATTTTAAATATGAATCCTAAAATTTTTCAATGAAAATCTTTAACTTTT-AGATGTGA-ATCC
66 GAAATTTCAAATATAAATCCCAAAATTTTTCAATGAAAATCTTTAACTTTTGA-ATATGAGA-CC
14175043 C-AAAAT
129 CTAAAAT
* * *
14175049 TTTTCAAATGAGAATTTTTGAAATTTCAAATG-TAAATCTTAAAATTTTTTAAATGTGAATCTTT
1 TTTTCAAATGAGAATTTTTGAAATTTCAAATGCAAAATCCTAAAATTTTTTAAATGTGAATATTT
* * *
14175113 GAAATTTCGAATGTAAATCCCAAAATTTTTGAATGAAAATCTTTAACTTTTGAATATGAGACCCT
66 GAAATTTCAAATATAAATCCCAAAATTTTTCAATGAAAATCTTTAACTTTTGAATATGAGACCCT
14175178 AAAAT
131 AAAAT
* *
14175183 TTTTCAAATAAGAATCTTTGAA
1 TTTTCAAATGAGAATTTTTGAA
14175205 CGTTGAAATT
Statistics
Matches: 134, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
133 92 0.69
134 42 0.31
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (135 bp):
TTTTCAAATGAGAATTTTTGAAATTTCAAATGCAAAATCCTAAAATTTTTTAAATGTGAATATTT
GAAATTTCAAATATAAATCCCAAAATTTTTCAATGAAAATCTTTAACTTTTGAATATGAGACCCT
AAAAT
Found at i:14175131 original size:22 final size:22
Alignment explanation
Indices: 14175050--14175131 Score: 78
Period size: 22 Copynumber: 3.7 Consensus size: 22
14175040 TCCCAAAATT
*
14175050 TTTCAAATG-AGAATTTTTGAAA
1 TTTCAAATGTA-AATCTTTGAAA
*
14175072 TTTCAAATGTAAATC-TTAAAA
1 TTTCAAATGTAAATCTTTGAAA
* *
14175093 TTTTTTAAATGTGAATCTTTGAAA
1 --TTTCAAATGTAAATCTTTGAAA
*
14175117 TTTCGAATGTAAATC
1 TTTCAAATGTAAATC
14175132 CCAAAATTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
21 5 0.10
22 24 0.50
23 14 0.29
24 5 0.10
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (22 bp):
TTTCAAATGTAAATCTTTGAAA
Found at i:14175364 original size:17 final size:17
Alignment explanation
Indices: 14175342--14175398 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
14175332 ATCTTTAAAG
14175342 TTCTTGTGAATCTGAAT
1 TTCTTGTGAATCTGAAT
* *
14175359 TTCTTG-CAACCTTTGAAT
1 TTCTTGTGAA--TCTGAAT
*
14175377 TTCTTGTGAACCTGAAT
1 TTCTTGTGAATCTGAAT
14175394 TTCTT
1 TTCTT
14175399 ATAAAACTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 2 0.06
17 16 0.50
18 12 0.38
19 2 0.06
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (17 bp):
TTCTTGTGAATCTGAAT
Found at i:14175443 original size:19 final size:19
Alignment explanation
Indices: 14175412--14175469 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
14175402 AAACTAAAGG
*
14175412 TCTTGCAAATCTTTGAATT
1 TCTTACAAATCTTTGAATT
* *
14175431 TGTTGA-TAATCTTTGAATT
1 TCTT-ACAAATCTTTGAATT
14175450 TCTTACAAATCTTTGAATT
1 TCTTACAAATCTTTGAATT
14175469 T
1 T
14175470 TTTGTGAACC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
18 1 0.03
19 31 0.97
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.50
Consensus pattern (19 bp):
TCTTACAAATCTTTGAATT
Found at i:14175497 original size:91 final size:90
Alignment explanation
Indices: 14175280--14175544 Score: 223
Period size: 91 Copynumber: 2.9 Consensus size: 90
14175270 GAATGTGAAT
* ** * * * * ** *
14175280 CTTTGAATTTCTT-TCGAACTTGAACTTTTTTGCAAACCTAAATCTCTTACAAATCTTTAAAGTT
1 CTTTGAATTTCTTGT-GAACCTGAA-TTTCCTACAAAACTAAAGCTCTTGCAAATCTTCGAATTT
* * *
14175344 CTTGTGAATC--TGAATTTCTTGCAAC
64 CTTATCAATCTTTGAATTTCTTACAAC
* * * * *
14175369 CTTTGAATTTCTTGTGAACCTGAATTTCTTATAAAACTAAAGGTCTTGCAAATCTTTGAATTTGT
1 CTTTGAATTTCTTGTGAACCTGAATTTCCTACAAAACTAAAGCTCTTGCAAATCTTCGAATTTCT
*
14175434 TGAT-AATCTTTGAATTTCTTACAAAT
66 T-ATCAATCTTTGAATTTCTTAC-AAC
* * * * * ** *
14175460 CTTTGAATTTTTTGTGAACCTTAATTTCCTACGAAACTGAAGCTTTTGTGAGTCTTCGAATTTCT
1 CTTTGAATTTCTTGTGAACCTGAATTTCCTACAAAACTAAAGCTCTTGCAAATCTTCGAATTTCT
14175525 TATCAATCTTTGAATTTCTT
66 TATCAATCTTTGAATTTCTT
14175545 GTGAACTTGA
Statistics
Matches: 143, Mismatches: 27, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
88 36 0.25
89 22 0.15
90 14 0.10
91 71 0.50
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.45
Consensus pattern (90 bp):
CTTTGAATTTCTTGTGAACCTGAATTTCCTACAAAACTAAAGCTCTTGCAAATCTTCGAATTTCT
TATCAATCTTTGAATTTCTTACAAC
Found at i:14177565 original size:34 final size:34
Alignment explanation
Indices: 14177526--14177603 Score: 156
Period size: 34 Copynumber: 2.3 Consensus size: 34
14177516 AAGTCGAAAC
14177526 AGCTCAGCCTCTTATCTTTTTTTGTTTGTGCACA
1 AGCTCAGCCTCTTATCTTTTTTTGTTTGTGCACA
14177560 AGCTCAGCCTCTTATCTTTTTTTGTTTGTGCACA
1 AGCTCAGCCTCTTATCTTTTTTTGTTTGTGCACA
14177594 AGCTCAGCCT
1 AGCTCAGCCT
14177604 TTCCTTTATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.44
Consensus pattern (34 bp):
AGCTCAGCCTCTTATCTTTTTTTGTTTGTGCACA
Found at i:14179303 original size:3 final size:3
Alignment explanation
Indices: 14179297--14179330 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
14179287 ATAATAATAA
14179297 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14179331 TCTAATGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:14184670 original size:2 final size:2
Alignment explanation
Indices: 14184663--14184720 Score: 66
Period size: 2 Copynumber: 30.0 Consensus size: 2
14184653 ACTTTGACCT
* * *
14184663 TA TA TA TA TA TA TA TA TA TA TA TA T- TG TA TA TG TA TA TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
14184704 TA TT TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA
14184721 AGATGTGAAG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
1 2 0.04
2 45 0.96
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (2 bp):
TA
Found at i:14185735 original size:14 final size:14
Alignment explanation
Indices: 14185706--14185744 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
14185696 ACGAATTTTC
* *
14185706 TTAATTTATTTTAA
1 TTAATTTAATTAAA
*
14185720 TTAGTTTAATTAAA
1 TTAATTTAATTAAA
14185734 TTAATTTAATT
1 TTAATTTAATT
14185745 TAACTAACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (14 bp):
TTAATTTAATTAAA
Found at i:14185949 original size:17 final size:17
Alignment explanation
Indices: 14185922--14185962 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
14185912 GGATTTTTTC
14185922 ATTATATTTTAA-CTATAA
1 ATTA-ATTTTAAGC-ATAA
14185940 ATTAATTTTAAGCATAA
1 ATTAATTTTAAGCATAA
14185957 A-TAATT
1 ATTAATT
14185963 AGATATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 5 0.23
17 12 0.55
18 5 0.23
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (17 bp):
ATTAATTTTAAGCATAA
Found at i:14186842 original size:36 final size:35
Alignment explanation
Indices: 14186796--14186864 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
14186786 ATATATAAAT
* * *
14186796 TAAATATTTTTTGAGCATAAATATATAATTGATAG
1 TAAATATTTTTTAAACATAAATATATAACTGATAG
*
14186831 TAAATATTTTTTTAAACATAAATTTATAACTGAT
1 TAAATA-TTTTTTAAACATAAATATATAACTGAT
14186865 TTCATATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 6 0.21
36 23 0.79
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.45
Consensus pattern (35 bp):
TAAATATTTTTTAAACATAAATATATAACTGATAG
Found at i:14189583 original size:26 final size:24
Alignment explanation
Indices: 14189536--14189583 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
14189526 CCACAAACCT
*
14189536 AAAAAAAAAAAGGGGAAAAAAAGC
1 AAAAAAAAAAAGAGGAAAAAAAGC
14189560 AAAAAAAATAAAGAGGAAAGAAAA
1 AAAAAAAA-AAAGAGGAAA-AAAA
14189584 AAAGAGAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 9 0.43
26 4 0.19
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (24 bp):
AAAAAAAAAAAGAGGAAAAAAAGC
Found at i:14189583 original size:27 final size:24
Alignment explanation
Indices: 14189536--14189584 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 24
14189526 CCACAAACCT
*
14189536 AAAAAAAAAAAGGGGAAAAAAAGC
1 AAAAAAAAAAAGGGAAAAAAAAGC
14189560 AAAAAAAATAAAGAGGAAAGAAAAA
1 AAAAAAAA-AAAG-GGAAA-AAAAA
14189585 AAGAGAGTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 4 0.19
26 4 0.19
27 5 0.24
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (24 bp):
AAAAAAAAAAAGGGAAAAAAAAGC
Found at i:14202602 original size:29 final size:30
Alignment explanation
Indices: 14202570--14202666 Score: 126
Period size: 30 Copynumber: 3.2 Consensus size: 30
14202560 ATTTATGTTA
14202570 AAAG-TTTATTTTG-GTGTAAATTAAAAGTT
1 AAAGTTTTA-TTTGAGTGTAAATTAAAAGTT
* **
14202599 AAAGTTTTATTTGAATACAAATTAAAAGTT
1 AAAGTTTTATTTGAGTGTAAATTAAAAGTT
*
14202629 AAAGTTTTATTTGAGTGTAAATTAAAAGCTA
1 AAAGTTTTATTTGAGTGTAAATTAAAAG-TT
14202660 AAAGTTT
1 AAAGTTT
14202667 ACATAAAGAC
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
29 8 0.14
30 42 0.72
31 8 0.14
ACGTcount: A:0.42, C:0.02, G:0.14, T:0.41
Consensus pattern (30 bp):
AAAGTTTTATTTGAGTGTAAATTAAAAGTT
Found at i:14203783 original size:57 final size:57
Alignment explanation
Indices: 14203601--14204107 Score: 705
Period size: 57 Copynumber: 8.7 Consensus size: 57
14203591 TTTTGTACGA
*
14203601 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTCGATTT-TCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTT--ATTTCT-AAGG
* * * *
14203660 AAAATTGATACTTTAAACTTTTCCCTAAAAATATTTTTTTTTG-AAATTTATTTCTGAGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATA---TTTTTTGAAAATTTATTTCTAAGG
14203719 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGG
* ** *
14203776 AAAATTGATACTTTAAACTTTTCCTGAAAAATATTTTTTTTTG-AAATTTATTTCTGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATA---TTTTTTGAAAATTTATTTCTAAGG
14203835 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGG
* * *
14203892 AAAATTGATACTTTCAACTTTTCCCTAGAAATATTTTTTTTTGAAAATTTATTTCAAAGG
1 AAAATTGATACTTTCAACTTTTCCCCA-AAA-A-TATTTTTTGAAAATTTATTTCTAAGG
14203952 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGG
* * *
14204009 AAAATTGATACTTTCAACTTTTCCCTAGAAATATTTTTTTTTGAAAATTTATTTCAAAGG
1 AAAATTGATACTTTCAACTTTTCCCCA-AAA-A-TATTTTTTGAAAATTTATTTCTAAGG
* *
14204069 AAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
14204108 TTTTTGAAAT
Statistics
Matches: 408, Mismatches: 25, Indels: 32
0.88 0.05 0.07
Matches are distributed among these distances:
56 14 0.03
57 143 0.35
58 8 0.02
59 121 0.30
60 109 0.27
61 6 0.01
62 7 0.02
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGG
Found at i:14203828 original size:116 final size:117
Alignment explanation
Indices: 14203601--14204107 Score: 842
Period size: 117 Copynumber: 4.3 Consensus size: 117
14203591 TTTTGTACGA
*
14203601 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTCGATTT-TCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTT--ATTTCT-AAGGAAAAT
** *
14203665 TGATACTTTAAACTTTTCCCTAAAAATATTTTTTTTTG-AAATTTATTTCTGAGA
63 TGATACTTTAAACTTTTCCCTAAAAATATTTTTTTTTGAAAATTTATTTCAAAGG
14203719 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGGAAAATTGA
**
14203784 TACTTTAAACTTTT-CCTGAAAAATATTTTTTTTTG-AAATTTATTTCTGAGG
66 TACTTTAAACTTTTCCCT-AAAAATATTTTTTTTTGAAAATTTATTTCAAAGG
14203835 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGGAAAATTGA
* *
14203900 TACTTTCAACTTTTCCCTAGAAATATTTTTTTTTGAAAATTTATTTCAAAGG
66 TACTTTAAACTTTTCCCTAAAAATATTTTTTTTTGAAAATTTATTTCAAAGG
14203952 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGGAAAATTGA
* *
14204017 TACTTTCAACTTTTCCCTAGAAATATTTTTTTTTGAAAATTTATTTCAAAGG
66 TACTTTAAACTTTTCCCTAAAAATATTTTTTTTTGAAAATTTATTTCAAAGG
* *
14204069 AAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
14204108 TTTTTGAAAT
Statistics
Matches: 377, Mismatches: 8, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
115 3 0.01
116 156 0.41
117 172 0.46
118 46 0.12
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (117 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAAGGAAAATTGA
TACTTTAAACTTTTCCCTAAAAATATTTTTTTTTGAAAATTTATTTCAAAGG
Found at i:14204183 original size:25 final size:26
Alignment explanation
Indices: 14204137--14204189 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
14204127 TTATTTAAAG
14204137 AAAATAAAATAATAAAAAATTA-ATA
1 AAAATAAAATAATAAAAAATTACATA
14204162 AAAAT-AAATAA-AAAGAATATTACATA
1 AAAATAAAATAATAAA-AA-ATTACATA
14204188 AA
1 AA
14204190 CCTAATCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.12
24 8 0.32
25 9 0.36
26 5 0.20
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (26 bp):
AAAATAAAATAATAAAAAATTACATA
Found at i:14204790 original size:12 final size:11
Alignment explanation
Indices: 14204764--14204817 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
14204754 CGGAATCTGG
14204764 AAATTTCCCAA
1 AAATTTCCCAA
*
14204775 AAATTTCCAGAA
1 AAATTTCC-CAA
14204787 AAATTTTCGCCAA
1 AAA-TTTC-CCAA
**
14204800 AAATTTCTAAA
1 AAATTTCCCAA
14204811 AAATTTC
1 AAATTTC
14204818 TCACTCCCAG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 17 0.47
12 9 0.25
13 9 0.25
14 1 0.03
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.31
Consensus pattern (11 bp):
AAATTTCCCAA
Found at i:14205226 original size:15 final size:17
Alignment explanation
Indices: 14205189--14205230 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
14205179 ATTAGATAAG
14205189 TAAAAATATAAAAATGA
1 TAAAAATATAAAAATGA
14205206 -ATAAAATA-AAAAA-GA
1 TA-AAAATATAAAAATGA
14205221 TAAAAATATA
1 TAAAAATATA
14205231 TATATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
15 8 0.36
16 8 0.36
17 6 0.27
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (17 bp):
TAAAAATATAAAAATGA
Found at i:14205256 original size:28 final size:29
Alignment explanation
Indices: 14205223--14205337 Score: 69
Period size: 28 Copynumber: 3.9 Consensus size: 29
14205213 AAAAAAGATA
*
14205223 AAAATATATATATA-TATACATAAATAAT
1 AAAATATACATATACTATACATAAATAAT
* * *
14205251 AAAATACACATA-AATATTAACAAAAAATAAAT
1 AAAATATACATATACTA-T-AC-ATAAAT-AAT
*
14205283 AAATATATACATATATTAATACAT-AATAAT
1 AAA-ATATACATATACT-ATACATAAATAAT
*
14205313 AATAATA-A-ATAATACAATACATAAA
1 AA-AATATACAT-ATACTATACATAAA
14205338 ATACAAAAGA
Statistics
Matches: 68, Mismatches: 8, Indels: 21
0.70 0.08 0.22
Matches are distributed among these distances:
27 1 0.01
28 20 0.29
29 7 0.10
30 10 0.15
31 9 0.13
32 7 0.10
33 10 0.15
34 3 0.04
35 1 0.01
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (29 bp):
AAAATATACATATACTATACATAAATAAT
Found at i:14206596 original size:31 final size:31
Alignment explanation
Indices: 14206548--14206611 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
14206538 GTATATAACT
* * *
14206548 GATACTTATAATTGACAATGCAAAATAGGAA
1 GATACTTATAATCGACAACGCAAAACAGGAA
*
14206579 GATACTTTTAATCGACAACGCAAAACAGGAA
1 GATACTTATAATCGACAACGCAAAACAGGAA
14206610 GA
1 GA
14206612 AGATTCTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.22
Consensus pattern (31 bp):
GATACTTATAATCGACAACGCAAAACAGGAA
Found at i:14207695 original size:26 final size:25
Alignment explanation
Indices: 14207662--14207713 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
14207652 CATAACCTTA
*
14207662 TATTGTTTAACATTGTGATAATTAT
1 TATTGTTTAACATTCTGATAATTAT
14207687 TATTAGTTTAACATTCTGATAATTAT
1 TATT-GTTTAACATTCTGATAATTAT
14207713 T
1 T
14207714 GTTTTGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.52
Consensus pattern (25 bp):
TATTGTTTAACATTCTGATAATTAT
Found at i:14213499 original size:13 final size:14
Alignment explanation
Indices: 14213481--14213519 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
14213471 GTCCGGTCAA
14213481 CGACGGTTCGGGT-
1 CGACGGTTCGGGTC
14213494 CGACGGTTC-GGTC
1 CGACGGTTCGGGTC
*
14213507 CGACGATTCGGGT
1 CGACGGTTCGGGT
14213520 ACGGTTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 3 0.13
13 17 0.74
14 3 0.13
ACGTcount: A:0.10, C:0.26, G:0.41, T:0.23
Consensus pattern (14 bp):
CGACGGTTCGGGTC
Found at i:14215216 original size:44 final size:49
Alignment explanation
Indices: 14215162--14215259 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 49
14215152 AAAGAGATCG
* *
14215162 GGATTGAACCATGAGT-A-AAAA-AAA-ACAACAATCGAGATT-AACTA
1 GGATTAAACCACGAGTCAGAAAATAAAGACAACAATCGAGATTAAACTA
14215206 GGATTAAACCACGAGTCAGAAAATAAAGACAACAATCGAGATTAAACTA
1 GGATTAAACCACGAGTCAGAAAATAAAGACAACAATCGAGATTAAACTA
*
14215255 CGATT
1 GGATT
14215260 TTGGATTAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
44 14 0.30
45 1 0.02
46 4 0.09
47 3 0.07
48 15 0.33
49 9 0.20
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.18
Consensus pattern (49 bp):
GGATTAAACCACGAGTCAGAAAATAAAGACAACAATCGAGATTAAACTA
Found at i:14215361 original size:34 final size:34
Alignment explanation
Indices: 14215310--14215397 Score: 81
Period size: 34 Copynumber: 2.6 Consensus size: 34
14215300 ACATCAACTT
*
14215310 GGATTGAATCAGAAGTCAAAAAATAAAGA-GACCG
1 GGATTGAACCAG-AGTCAAAAAATAAAGATGACCG
* * *
14215344 GGATTGAACCATGAGTC-AACAATCAAGATTACCG
1 GGATTGAACCA-GAGTCAAAAAATAAAGATGACCG
* *
14215378 AGATTAAACCACGAGTCAAA
1 GGATTGAACCA-GAGTCAAA
14215398 GATTAACAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
33 9 0.20
34 32 0.73
35 3 0.07
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.17
Consensus pattern (34 bp):
GGATTGAACCAGAGTCAAAAAATAAAGATGACCG
Found at i:14215366 original size:173 final size:163
Alignment explanation
Indices: 14215032--14215397 Score: 387
Period size: 173 Copynumber: 2.1 Consensus size: 163
14215022 AAATAAAAAG
* * * * *
14215032 ACTAGGATTAAATCACCAGTC-AAAATATAACAACAATTGAGATTAAACTGCGATTTTAGATTAA
1 ACTAGGATTAAACCACGAGTCAAAAATAAAACAACAATCGAGATTAAACTACGATTTTAGATTAA
* * * * * * * *
14215096 AGAAATCGGGATTGAATCGTGAGTTAGAATAACGTCAATTTGAATTGAATCATAATAAAGAGATC
66 AGAAATCGAGATTAAATCGCGAGTCAGAATAACATCAATTTGAATAGAATCAAAATAAAGAGACC
*
14215161 GGGATTGAACCATGAGTAAAAAAAAACAACAATCGAGATTA
131 GGGATTGAACCATGAGT--------ACAACAATCAAGATTA
*
14215202 ACTAGGATTAAACCACGAGTCAGAAAATAAAGACAACAATCGAGATTAAACTACGATTTTGGATT
1 ACTAGGATTAAACCACGAGTCA-AAAATAAA-ACAACAATCGAGATTAAACTACGATTTTAGATT
14215267 AAAGAAATCGAGATTAAATCGCGAGTCAGAATAACATCAACTTGGATTGAATCAGAAGTCAAAAA
64 AAAGAAATCGAGATTAAATCGCGAGTCAGAATAACATCAA--T---TTGAAT-AGAA-TC--AAA
14215332 ATAAAGAGACCGGGATTGAACCATGAGT-CAACAATCAAGATTA
120 ATAAAGAGACCGGGATTGAACCATGAGTACAACAATCAAGATTA
* *
14215375 CCGA-GATTAAACCACGAGTCAAA
1 ACTAGGATTAAACCACGAGTCAAA
14215398 GATTAACAAT
Statistics
Matches: 167, Mismatches: 17, Indels: 23
0.81 0.08 0.11
Matches are distributed among these distances:
170 19 0.11
171 2 0.01
172 24 0.14
173 81 0.49
175 1 0.01
178 6 0.04
179 3 0.02
180 2 0.01
182 29 0.17
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.22
Consensus pattern (163 bp):
ACTAGGATTAAACCACGAGTCAAAAATAAAACAACAATCGAGATTAAACTACGATTTTAGATTAA
AGAAATCGAGATTAAATCGCGAGTCAGAATAACATCAATTTGAATAGAATCAAAATAAAGAGACC
GGGATTGAACCATGAGTACAACAATCAAGATTA
Found at i:14215508 original size:109 final size:109
Alignment explanation
Indices: 14215377--14215877 Score: 677
Period size: 109 Copynumber: 4.6 Consensus size: 109
14215367 CAAGATTACC
* *
14215377 GAGATTAAACCACGAGTCAAAGATTAACAATGACTTGGACTGAACCGCAAGTCAAAAAAATAAAA
1 GAGATTAAACCACGAGTCAAAGATTAACAATGACTGGGACTGAACCGCAAGTCAAAGAAATAAAA
** *
14215442 GCGACTAGGATTAAACTGTAAGTCGATAAGCTATAAGAATGATT
66 GCGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGAATGATT
* * * *
14215486 GAGATTAAACCACGAGTCAAAGATTAACGATGACCGGGATTAAACCGCAAGTCAAAGAAATAAAA
1 GAGATTAAACCACGAGTCAAAGATTAACAATGACTGGGACTGAACCGCAAGTCAAAGAAATAAAA
* *
14215551 GCGACTAGGATTAAACCGTAAGTCGAGAAGCTATAAGAATGACT
66 GCGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGAATGATT
* *
14215595 GAGATTAAACCATGAGTCAAAGATTAA-AGATAACTGGGACTGAACCGCAAGTCAAAGAAATAAA
1 GAGATTAAACCACGAGTCAAAGATTAACA-ATGACTGGGACTGAACCGCAAGTCAAAGAAATAAA
* *
14215659 AGCGACTAGGATTAAATCATAAGTCGAGAAGCTATAAGAATTA-T
65 AGCGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGAATGATT
* * * *
14215703 CAGGATTAAACAATGAGTCAAAGATTAACGATGA-TCGGGACTGAACCGCAAGTCAAAGAAATAA
1 GA-GATTAAACCACGAGTCAAAGATTAACAATGACT-GGGACTGAACCGCAAGTCAAAGAAATAA
* *
14215767 AAGTGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGAATGATC
64 AAGCGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGAATGATT
* * * * * * **
14215813 AAGATTAAATCACGAGTCAAAGATTAA-AGATAACTTGGACTAAACCGTAAGTCAGGGAAATAAA
1 GAGATTAAACCACGAGTCAAAGATTAACA-ATGACTGGGACTGAACCGCAAGTCAAAGAAATAAA
14215877 A
65 A
14215878 ATAACCATAA
Statistics
Matches: 348, Mismatches: 37, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
108 3 0.01
109 343 0.99
110 2 0.01
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.20
Consensus pattern (109 bp):
GAGATTAAACCACGAGTCAAAGATTAACAATGACTGGGACTGAACCGCAAGTCAAAGAAATAAAA
GCGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGAATGATT
Found at i:14215604 original size:38 final size:36
Alignment explanation
Indices: 14215377--14215657 Score: 141
Period size: 35 Copynumber: 7.8 Consensus size: 36
14215367 CAAGATTACC
* * *
14215377 GAGATTAAACCACGAGTCAAAGAT-TAACAATGACTT
1 GAGATTAAACCGCAAGTCAAAGATATAAGAATGAC-T
* * * * *
14215413 G-GACTGAACCGCAAGTCAAAAAAATAA-AAGCGACT
1 GAGATTAAACCGCAAGTCAAAGATATAAGAA-TGACT
* * * *
14215448 -AGGATTAAACTGTAAGTCGATAAGCTATAAGAATGATT
1 GA-GATTAAACCGCAAGTC-A-AAGATATAAGAATGACT
* * *
14215486 GAGATTAAACCACGAGTCAAAGAT-TAACG-ATGACC
1 GAGATTAAACCGCAAGTCAAAGATATAA-GAATGACT
* * *
14215521 GGGATTAAACCGCAAGTCAAAGAAATAA-AAGCGACT
1 GAGATTAAACCGCAAGTCAAAGATATAAGAA-TGACT
* *
14215557 -AGGATTAAACCGTAAGTCGAGAAGCTATAAGAATGACT
1 GA-GATTAAACCGCAAGTC-A-AAGATATAAGAATGACT
*** *
14215595 GAGATTAAACCATGAGTCAAAGAT-TAA-AGATAACT
1 GAGATTAAACCGCAAGTCAAAGATATAAGA-ATGACT
* * * *
14215630 GGGACTGAACCGCAAGTCAAAGAAATAA
1 GAGATTAAACCGCAAGTCAAAGATATAA
14215658 AAGCGACTAG
Statistics
Matches: 181, Mismatches: 45, Indels: 38
0.69 0.17 0.14
Matches are distributed among these distances:
34 1 0.01
35 72 0.40
36 52 0.29
37 4 0.02
38 46 0.25
39 6 0.03
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (36 bp):
GAGATTAAACCGCAAGTCAAAGATATAAGAATGACT
Found at i:14215819 original size:38 final size:36
Alignment explanation
Indices: 14215448--14215836 Score: 133
Period size: 38 Copynumber: 10.7 Consensus size: 36
14215438 AAAAGCGACT
** *
14215448 AGGATTAAACTGTAAGTCGATAAGCTATAAGAATGAT-
1 AGGATTAAACCATAAGTC-A-AAGATATAAGAATGATC
* ** *
14215485 TGAGATTAAACCACGAGTCAAAGAT-TAACG-ATGACC
1 AG-GATTAAACCATAAGTCAAAGATATAA-GAATGATC
* ** * *
14215521 GGGATTAAACCGCAAGTCAAAGAAATAA-AAGCGA-C
1 AGGATTAAACCATAAGTCAAAGATATAAGAA-TGATC
* *
14215556 TAGGATTAAACCGTAAGTCGAGAAGCTATAAGAATGA-C
1 -AGGATTAAACCATAAGTC-A-AAGATATAAGAATGATC
* * *
14215594 TGAGATTAAACCATGAGTCAAAGAT-TAA-AGAT-AAC
1 AG-GATTAAACCATAAGTCAAAGATATAAGA-ATGATC
* * * ** * *
14215629 TGGGACTGAACCGCAAGTCAAAGAAATAA-AAGCGA-C
1 -AGGATTAAACCATAAGTCAAAGATATAAGAA-TGATC
* * *
14215665 TAGGATTAAATCATAAGTCGAGAAGCTATAAGAATTATC
1 -AGGATTAAACCATAAGTC-A-AAGATATAAGAATGATC
* *
14215704 AGGATTAAACAATGAGTCAAAGAT-TAACG-ATGATC
1 AGGATTAAACCATAAGTCAAAGATATAA-GAATGATC
* * * ** *
14215739 GGGACTGAACCGCAAGTCAAAGAAATAA-AAGTGA-C
1 AGGATTAAACCATAAGTCAAAGATATAAGAA-TGATC
*
14215774 TAGGATTAAACCATAAGTCGAGAAGCTATAAGAATGATC
1 -AGGATTAAACCATAAGTC-A-AAGATATAAGAATGATC
* * **
14215813 AAGATTAAATCACGAGTCAAAGAT
1 AGGATTAAACCATAAGTCAAAGAT
14215837 TAAAGATAAC
Statistics
Matches: 258, Mismatches: 64, Indels: 61
0.67 0.17 0.16
Matches are distributed among these distances:
34 2 0.01
35 77 0.30
36 78 0.30
37 10 0.04
38 83 0.32
39 8 0.03
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.20
Consensus pattern (36 bp):
AGGATTAAACCATAAGTCAAAGATATAAGAATGATC
Found at i:14215875 original size:218 final size:218
Alignment explanation
Indices: 14215378--14215877 Score: 747
Period size: 218 Copynumber: 2.3 Consensus size: 218
14215368 AAGATTACCG
* *
14215378 AGATTAAACCACGAGTCAAAGATTAACA-ATGACTTGGACTGAACCGCAAGTCAAAAAAATAAAA
1 AGATTAAACCACGAGTCAAAGATTAA-AGATAACTTGGACTGAACCGCAAGTCAAAGAAATAAAA
* * * *
14215442 GCGACTAGGATTAAACTGTAAGTCGATAAGCTATAAGAATGATTGAGATTAAACCACGAGTCAAA
65 GCGACTAGGATTAAACTATAAGTCGAGAAGCTATAAGAATGATAGAGATTAAACAACGAGTCAAA
* *
14215507 GATTAACGATGACCGGGATTAAACCGCAAGTCAAAGAAATAAAAGCGACTAGGATTAAACCGTAA
130 GATTAACGATGACCGGGACTAAACCGCAAGTCAAAGAAATAAAAGCGACTAGGATTAAACCATAA
*
14215572 GTCGAGAAGCTATAAGAATGACTG
195 GTCGAGAAGCTATAAGAATGACTA
* *
14215596 AGATTAAACCATGAGTCAAAGATTAAAGATAACTGGGACTGAACCGCAAGTCAAAGAAATAAAAG
1 AGATTAAACCACGAGTCAAAGATTAAAGATAACTTGGACTGAACCGCAAGTCAAAGAAATAAAAG
* *
14215661 CGACTAGGATTAAA-TCATAAGTCGAGAAGCTATAAGAATTATCAG-GATTAAACAATGAGTCAA
66 CGACTAGGATTAAACT-ATAAGTCGAGAAGCTATAAGAATGAT-AGAGATTAAACAACGAGTCAA
* * *
14215724 AGATTAACGATGATCGGGACTGAACCGCAAGTCAAAGAAATAAAAGTGACTAGGATTAAACCATA
129 AGATTAACGATGACCGGGACTAAACCGCAAGTCAAAGAAATAAAAGCGACTAGGATTAAACCATA
14215789 AGTCGAGAAGCTATAAGAATGA-TCA
194 AGTCGAGAAGCTATAAGAATGACT-A
* * * **
14215814 AGATTAAATCACGAGTCAAAGATTAAAGATAACTTGGACTAAACCGTAAGTCAGGGAAATAAAA
1 AGATTAAACCACGAGTCAAAGATTAAAGATAACTTGGACTGAACCGCAAGTCAAAGAAATAAAA
14215878 ATAACCATAA
Statistics
Matches: 255, Mismatches: 23, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
217 3 0.01
218 251 0.98
219 1 0.00
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (218 bp):
AGATTAAACCACGAGTCAAAGATTAAAGATAACTTGGACTGAACCGCAAGTCAAAGAAATAAAAG
CGACTAGGATTAAACTATAAGTCGAGAAGCTATAAGAATGATAGAGATTAAACAACGAGTCAAAG
ATTAACGATGACCGGGACTAAACCGCAAGTCAAAGAAATAAAAGCGACTAGGATTAAACCATAAG
TCGAGAAGCTATAAGAATGACTA
Found at i:14228377 original size:16 final size:16
Alignment explanation
Indices: 14228356--14228386 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14228346 TTAGGGTTTT
14228356 GATTTTAGAGTTTGGA
1 GATTTTAGAGTTTGGA
*
14228372 GATTTTAGGGTTTGG
1 GATTTTAGAGTTTGG
14228387 GTTTTGAGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.45
Consensus pattern (16 bp):
GATTTTAGAGTTTGGA
Found at i:14228397 original size:14 final size:14
Alignment explanation
Indices: 14228380--14228407 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14228370 GAGATTTTAG
14228380 GGTTTGGGTTTTGA
1 GGTTTGGGTTTTGA
14228394 GGTTTGGGTTTTGA
1 GGTTTGGGTTTTGA
14228408 TTTAAGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.43, T:0.50
Consensus pattern (14 bp):
GGTTTGGGTTTTGA
Found at i:14228416 original size:14 final size:14
Alignment explanation
Indices: 14228399--14228435 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
14228389 TTTGAGGTTT
14228399 GGGTTTTGATTTAA
1 GGGTTTTGATTTAA
*
14228413 GGGTTTGGATTTAA
1 GGGTTTTGATTTAA
14228427 GGGATTTTG
1 GGG-TTTTG
14228436 GTTTTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (14 bp):
GGGTTTTGATTTAA
Found at i:14228436 original size:50 final size:51
Alignment explanation
Indices: 14228342--14228440 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 51
14228332 AGGATATGGA
* *
14228342 AGGTTTAGGGTTTTGATTTTAGAGTTTGGAGATTTTAGGGTTTGGGTTTTG
1 AGGTTTAGGGTTTTGATTTAAGAGTTTGGAGATTTAAGGGTTTGGGTTTTG
* *
14228393 AGGTTT-GGGTTTTGATTTAAGGGTTT-G-GATTTAAGGGATTTTGGTTTT
1 AGGTTTAGGGTTTTGATTTAAGAGTTTGGAGATTTAAGGG-TTTGGGTTTT
14228441 TAAAAAAAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
48 9 0.21
49 10 0.23
50 18 0.42
51 6 0.14
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.49
Consensus pattern (51 bp):
AGGTTTAGGGTTTTGATTTAAGAGTTTGGAGATTTAAGGGTTTGGGTTTTG
Found at i:14230912 original size:17 final size:18
Alignment explanation
Indices: 14230874--14230912 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
14230864 TTATATACAC
14230874 ATAAACATAGTGTTTGAT
1 ATAAACATAGTGTTTGAT
14230892 ATAAACACTA-TGTTT-AT
1 ATAAACA-TAGTGTTTGAT
14230909 ATAA
1 ATAA
14230913 GAAAATTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 12 0.60
19 2 0.10
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (18 bp):
ATAAACATAGTGTTTGAT
Found at i:14233274 original size:13 final size:13
Alignment explanation
Indices: 14233247--14233326 Score: 61
Period size: 13 Copynumber: 6.2 Consensus size: 13
14233237 GGATTTCATC
* *
14233247 TAGGATTTTAGTT
1 TAGGGTTTTATTT
*
14233260 TAGGGTTTTGTTT
1 TAGGGTTTTATTT
** * *
14233273 TAACGTTTCACTT
1 TAGGGTTTTATTT
* *
14233286 TAAGGTTTCATTT
1 TAGGGTTTTATTT
*
14233299 TAGGGTTTTTTTT
1 TAGGGTTTTATTT
*
14233312 TTGGGTTTTATTT
1 TAGGGTTTTATTT
14233325 TA
1 TA
14233327 TTTGTTTTTT
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 51 1.00
ACGTcount: A:0.16, C:0.05, G:0.20, T:0.59
Consensus pattern (13 bp):
TAGGGTTTTATTT
Found at i:14233501 original size:3 final size:3
Alignment explanation
Indices: 14233493--14233526 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
14233483 TATTAAAATT
14233493 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
14233527 ATTTTTTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14233545 original size:39 final size:39
Alignment explanation
Indices: 14233450--14233554 Score: 94
Period size: 39 Copynumber: 2.8 Consensus size: 39
14233440 TTAAAAAAAA
* *
14233450 TAAATTTTTA-TACTTTTA-TA-TAGTT-TTATTTTTTAT
1 TAAAATTTTATTACTTTTATTATTA-TTATTATTATTTAT
14233486 TAAAATTTTATTA-TTATTATTATTATTATTATTATTTAT
1 TAAAATTTTATTACTT-TTATTATTATTATTATTATTTAT
** * * *
14233525 TAATTTTTTCTTACTTTTATTTTTAATATT
1 TAAAATTTTATTACTTTTATTATTATTATT
14233555 TAATAATTTC
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
36 11 0.20
37 5 0.09
38 4 0.07
39 34 0.61
40 2 0.04
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.67
Consensus pattern (39 bp):
TAAAATTTTATTACTTTTATTATTATTATTATTATTTAT
Found at i:14233926 original size:17 final size:16
Alignment explanation
Indices: 14233900--14233931 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
14233890 TATTTCTATG
14233900 TTTATTATTTATTTTA
1 TTTATTATTTATTTTA
14233916 TTTATTTATTTATTTT
1 TTTA-TTATTTATTTT
14233932 TAAAACAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTATTATTTATTTTA
Found at i:14235918 original size:12 final size:12
Alignment explanation
Indices: 14235901--14235957 Score: 60
Period size: 12 Copynumber: 4.7 Consensus size: 12
14235891 TTGAAATTAA
*
14235901 AAATTTAATGAT
1 AAATTTAATAAT
* *
14235913 AAATTTATTTAAA
1 AAATTTA-ATAAT
* *
14235926 AAATATAGTAAT
1 AAATTTAATAAT
14235938 AAATTTAATAAT
1 AAATTTAATAAT
14235950 AAATTTAA
1 AAATTTAA
14235958 AACATAGACG
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
12 28 0.78
13 8 0.22
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (12 bp):
AAATTTAATAAT
Found at i:14236320 original size:183 final size:182
Alignment explanation
Indices: 14235994--14236360 Score: 549
Period size: 183 Copynumber: 2.0 Consensus size: 182
14235984 TTATTTCAAA
* * *
14235994 AATCTAATTTAAATTTTGTGGGTGAGACATATATCTTATCCATCCAGCCAAAATCTTATAGAATT
1 AATCAAATTTAAATTTTATGGGTGAGACA-ATATCTTATCCATCCAGCCAAAATCTTATAGAATG
* * *
14236059 TGAATTTATTTTCTTTTCAGATTTTTTGGTTGTCCTCTTCTTAATTACAGTAAATGTTAGAATTC
65 TGAATTTATTTTCTTTTCAGATTTTGTGGTTGTCCTCTTCTTAATTACAATAAATGCTAGAATTC
* *
14236124 ATAAAAGAAGATAATGCCAGAAGATGGATGTACCATCTCTGAATAAAACAGTC
130 ATAAAAGAAGATAATACCAGAAGATGCATGTACCATCTCTGAATAAAACAGTC
** *
14236177 AATCAAATTTAAATTTTATGGGTGAGAC-ATATCTTATCCATCGGGCCAAAATCTTATAGGATGT
1 AATCAAATTTAAATTTTATGGGTGAGACAATATCTTATCCATCCAGCCAAAATCTTATAGAATGT
*
14236241 GAATTTATTTTCTTTTCAGATTTTGTGGTTGTCGTCTCTTCTTAATTACAATAAATGCTATAATT
66 GAATTTATTTTCTTTTCAGATTTTGTGGTTGTC--CTCTTCTTAATTACAATAAATGCTAGAATT
* * *
14236306 CATCAAAA-AAGATAATACCAGAAGATGCATGTGCCATGTCTGAATAAAATAGTC
129 CAT-AAAAGAAGATAATACCAGAAGATGCATGTACCATCTCTGAATAAAACAGTC
14236360 A
1 A
14236361 CGTTGTTAAG
Statistics
Matches: 166, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
181 64 0.39
183 98 0.59
184 4 0.02
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (182 bp):
AATCAAATTTAAATTTTATGGGTGAGACAATATCTTATCCATCCAGCCAAAATCTTATAGAATGT
GAATTTATTTTCTTTTCAGATTTTGTGGTTGTCCTCTTCTTAATTACAATAAATGCTAGAATTCA
TAAAAGAAGATAATACCAGAAGATGCATGTACCATCTCTGAATAAAACAGTC
Found at i:14237308 original size:10 final size:10
Alignment explanation
Indices: 14237293--14237318 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14237283 TAATAAAGTT
14237293 TTAAAATTAA
1 TTAAAATTAA
14237303 TTAAAATTAA
1 TTAAAATTAA
14237313 TTAAAA
1 TTAAAA
14237319 AGATAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
TTAAAATTAA
Found at i:14237762 original size:11 final size:11
Alignment explanation
Indices: 14237746--14237770 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14237736 TTTGTTAGAA
14237746 ATTTTATTAAT
1 ATTTTATTAAT
14237757 ATTTTATTAAT
1 ATTTTATTAAT
14237768 ATT
1 ATT
14237771 CCTATTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTTTATTAAT
Found at i:14238220 original size:238 final size:238
Alignment explanation
Indices: 14237802--14238231 Score: 536
Period size: 238 Copynumber: 1.8 Consensus size: 238
14237792 AAGGAATTTA
* * *
14237802 ATTATATTGAAGATTTTCTATAAATATTCCAATACGCGGATAATATTTTATAAAAAATCTTCTCA
1 ATTATATTGAAGATTTTCTATAAATATTCCAATACACGGATAATATTTTACAAAAAATATTCTCA
** * ** *
14237867 CCTAGAGATTTCTTAAAGCATCTTTACTCAGAATACTTTTAGAATCCTATCATTGGATTAAATTT
66 CCTAGAGATTTCTTAAAGCATCACTACTCAGAATACCTTTAGAATCCTATCATCAGATAAAATTT
* *
14237932 CTTTTCTTCTCATTTTTATTACTTATTTTTAATATATTAATCAATTTTTAT-TTATTATTTTAAA
131 CTTTTC-TCTCATTTTTATTACTTAGTATTAATATATTAATCAATTTTTATATTATTATTTTAAA
14237996 AAAAGAAATTTTTATTTAAAAAATTGAAGAAAAATGAAATTTTT
195 AAAAGAAATTTTTATTTAAAAAATTGAAGAAAAATGAAATTTTT
*
14238040 ATTATATTGAAGATTTTCTATAAATATTTCAATACACTGG-TAATATTTTACAAAAAATATTCTC
1 ATTATATTGAAGATTTTCTATAAATATTCCAATACAC-GGATAATATTTTACAAAAAATATTCTC
* * *
14238104 ACCTAGAGATTT-TGTAGA-CATCACTACTCGGAATACCTTT-GAAT-CTCATCGTCAGATAAAA
65 ACCTAGAGATTTCT-TAAAGCATCACTACTCAGAATACCTTTAGAATCCT-ATCATCAGAT-AAA
* **
14238165 ATTTCCTTTTC-CTACATTTTTTATTAGTTTAGTATT-AT-TATTAAATTTATTTTTATATTATT
127 ATTT-CTTTTCTCT-CA-TTTTTATTA-CTTAGTATTAATATATT-AATCAATTTTTATATTATT
*
14238227 CTTTT
187 ATTTT
14238232 TAAAGTTTAT
Statistics
Matches: 163, Mismatches: 19, Indels: 19
0.81 0.09 0.09
Matches are distributed among these distances:
235 2 0.01
236 13 0.08
237 31 0.19
238 100 0.61
239 17 0.10
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (238 bp):
ATTATATTGAAGATTTTCTATAAATATTCCAATACACGGATAATATTTTACAAAAAATATTCTCA
CCTAGAGATTTCTTAAAGCATCACTACTCAGAATACCTTTAGAATCCTATCATCAGATAAAATTT
CTTTTCTCTCATTTTTATTACTTAGTATTAATATATTAATCAATTTTTATATTATTATTTTAAAA
AAAGAAATTTTTATTTAAAAAATTGAAGAAAAATGAAATTTTT
Found at i:14238428 original size:13 final size:13
Alignment explanation
Indices: 14238408--14238441 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14238398 GGTTAATGCG
*
14238408 CGGTTCGGTTCGA
1 CGGTTCGGTCCGA
*
14238421 CTGTTCGGTCCGA
1 CGGTTCGGTCCGA
14238434 CGGTTCGG
1 CGGTTCGG
14238442 CTCGGTTTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.26, G:0.38, T:0.29
Consensus pattern (13 bp):
CGGTTCGGTCCGA
Found at i:14238481 original size:19 final size:19
Alignment explanation
Indices: 14238457--14238493 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14238447 TTTGGGCACA
*
14238457 GTCTGGGTGATTCGGTTCG
1 GTCTGGGCGATTCGGTTCG
*
14238476 GTCTGGGCGGTTCGGTTC
1 GTCTGGGCGATTCGGTTC
14238494 CGGTTCAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.03, C:0.19, G:0.43, T:0.35
Consensus pattern (19 bp):
GTCTGGGCGATTCGGTTCG
Found at i:14239416 original size:21 final size:20
Alignment explanation
Indices: 14239386--14239426 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
14239376 CCATCTTTGA
14239386 TTTTTTTATTCTGTTATATT
1 TTTTTTTATTCTGTTATATT
* *
14239406 TTTTTTGTATTTTTTTATATT
1 TTTTTT-TATTCTGTTATATT
14239427 ATTTCATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTTTTTATTCTGTTATATT
Found at i:14239897 original size:49 final size:48
Alignment explanation
Indices: 14239625--14240267 Score: 803
Period size: 49 Copynumber: 13.2 Consensus size: 48
14239615 TTGAGGCTTG
* * * * * *
14239625 ACAACTTTAAAAATTTTATCTTGAAAAGGGCTCCTTTCAACAGAGGCTCT
1 ACAACTTT-AAAATCTCAT-TTGAAAAAGGCTCCTCTCAGCAGAGGCTCA
*
14239675 ACAACTTTAAAATCTCATTTGAAAAA-GCTCATCTCAGCAGAGGCTCA
1 ACAACTTTAAAATCTCATTTGAAAAAGGCTCCTCTCAGCAGAGGCTCA
* * * *
14239722 ATAACTTTAAAATTTCAATTG-AAAATGCTCCTCTCAGCAGAGGCTCA
1 ACAACTTTAAAATCTCATTTGAAAAAGGCTCCTCTCAGCAGAGGCTCA
* * *
14239769 ATAACTTTAAAATCTCACTTGAAAAA-GCTCCTCCCAGCAGAGGCTCA
1 ACAACTTTAAAATCTCATTTGAAAAAGGCTCCTCTCAGCAGAGGCTCA
* * **
14239816 ACAACTTTAAAAATCTCATCTTGGAAAGGGCTCCTCTCAATAGAGGCTCA
1 ACAACTTT-AAAATCTCAT-TTGAAAAAGGCTCCTCTCAGCAGAGGCTCA
* * * *
14239866 ATAACTTTAAAATTTCATCTTGAAAAAGGCTCCCCTCAACAGAGGCTCA
1 ACAACTTTAAAATCTCAT-TTGAAAAAGGCTCCTCTCAGCAGAGGCTCA
* *
14239915 ACAACTTTAAAATTTCATTTGAAAAAGGTTCCTCTCAGCAGAGGCTCA
1 ACAACTTTAAAATCTCATTTGAAAAAGGCTCCTCTCAGCAGAGGCTCA
* *
14239963 ACAACTTTAAAATCTCATTTGAAAAA-GCTCCTCTCAGCTGAAGCTCA
1 ACAACTTTAAAATCTCATTTGAAAAAGGCTCCTCTCAGCAGAGGCTCA
*
14240010 A-AAATTATAAAAATCTCATTTAGAAAAAGGCTCCTCTCAGCAGAGGCTCA
1 ACAACTT-T-AAAATCTCATTT-GAAAAAGGCTCCTCTCAGCAGAGGCTCA
14240060 ACAACTTTAAAATCTCATTTGAAAAAGGGCTCCTCTCA-CTAGAGGCTCA
1 ACAACTTTAAAATCTCATTTGAAAAA-GGCTCCTCTCAGC-AGAGGCTCA
* *
14240109 ATAACTTTAAAATTTCATTTGAAAAAAGGCTCCTCTCAGCAGAGGCTCA
1 ACAACTTTAAAATCTCATTTG-AAAAAGGCTCCTCTCAGCAGAGGCTCA
* * *
14240158 ACAACTTTAAAATCGCATTTGAAAAAGGGCTCTTCTCAGCATAGGCTCA
1 ACAACTTTAAAATCTCATTTGAAAAA-GGCTCCTCTCAGCAGAGGCTCA
* * * *
14240207 AAAATTTTAAAATTTCATCTTGGAAAAGGCTCCTCTCAGCAGAGGCTCA
1 ACAACTTTAAAATCTCAT-TTGAAAAAGGCTCCTCTCAGCAGAGGCTCA
14240256 ACAACTTTAAAA
1 ACAACTTTAAAA
14240268 AATCTCATCT
Statistics
Matches: 522, Mismatches: 55, Indels: 33
0.86 0.09 0.05
Matches are distributed among these distances:
46 8 0.02
47 121 0.23
48 96 0.18
49 226 0.43
50 67 0.13
51 4 0.01
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.27
Consensus pattern (48 bp):
ACAACTTTAAAATCTCATTTGAAAAAGGCTCCTCTCAGCAGAGGCTCA
Found at i:14239948 original size:97 final size:95
Alignment explanation
Indices: 14239598--14240267 Score: 824
Period size: 97 Copynumber: 6.9 Consensus size: 95
14239588 TTTTTCTTTC
* *** ** * * *
14239598 GAAAATGCTCCTCTCATTTGAGGCTTGACAACTTTAAAAATTTTATCTTGAAAAGGGCTCCTTTC
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATTTCAT-TTGAAAAAGGCTCCTCTC
* *
14239663 AACAGAGGCTCTACAACTTTAAAATCTCATTT
64 AGCAGAGGCTCAACAACTTTAAAATCTCATTT
* * * *
14239695 GAAAAAGCTCATCTCAGCAGAGGCTCAATAACTTTAAAATTTCAATTG-AAAATGCTCCTCTCAG
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTCATTTGAAAAAGGCTCCTCTCAG
* *
14239759 CAGAGGCTCAATAACTTTAAAATCTCACTT
66 CAGAGGCTCAACAACTTTAAAATCTCATTT
* * * *
14239789 GAAAAAGCTCCTCCCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGGAAAGGGCTCCTCTC
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATTTCAT-TTGAAAAAGGCTCCTCTC
** * *
14239854 AATAGAGGCTCAATAACTTTAAAATTTCATCTT
64 AGCAGAGGCTCAACAACTTTAAAATCTCAT-TT
* * *
14239887 GAAAAAGGCTCCCCTCAACAGAGGCTCAACAACTTTAAAATTTCATTTGAAAAAGGTTCCTCTCA
1 GAAAAA-GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTCATTTGAAAAAGGCTCCTCTCA
14239952 GCAGAGGCTCAACAACTTTAAAATCTCATTT
65 GCAGAGGCTCAACAACTTTAAAATCTCATTT
* * * *
14239983 GAAAAAGCTCCTCTCAGCTGAAGCTCAA-AAATTATAAAAATCTCATTTAGAAAAAGGCTCCTCT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTT-T-AAAATTTCATTT-GAAAAAGGCTCCTCT
14240047 CAGCAGAGGCTCAACAACTTTAAAATCTCATTT
63 CAGCAGAGGCTCAACAACTTTAAAATCTCATTT
*
14240080 GAAAAAGGGCTCCTCTCA-CTAGAGGCTCAATAACTTTAAAATTTCATTTGAAAAAAGGCTCCTC
1 GAAAAA--GCTCCTCTCAGC-AGAGGCTCAACAACTTTAAAATTTCATTTG-AAAAAGGCTCCTC
*
14240144 TCAGCAGAGGCTCAACAACTTTAAAATCGCATTT
62 TCAGCAGAGGCTCAACAACTTTAAAATCTCATTT
* * * * *
14240178 GAAAAAGGGCTCTTCTCAGCATAGGCTCAAAAATTTTAAAATTTCATCTTGGAAAAGGCTCCTCT
1 GAAAAA--GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTCAT-TTGAAAAAGGCTCCTCT
14240243 CAGCAGAGGCTCAACAACTTTAAAA
63 CAGCAGAGGCTCAACAACTTTAAAA
14240268 AATCTCATCT
Statistics
Matches: 502, Mismatches: 56, Indels: 29
0.86 0.10 0.05
Matches are distributed among these distances:
94 75 0.15
95 30 0.06
96 30 0.06
97 160 0.32
98 154 0.31
99 49 0.10
100 4 0.01
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (95 bp):
GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTCATTTGAAAAAGGCTCCTCTCAG
CAGAGGCTCAACAACTTTAAAATCTCATTT
Found at i:14240639 original size:73 final size:74
Alignment explanation
Indices: 14240519--14240668 Score: 293
Period size: 73 Copynumber: 2.0 Consensus size: 74
14240509 CTGTTCTTAA
14240519 CATCTGACCATAATATTTTTTTTCTTCAAAAGTCTGCAACATCAATGTCTTGTCATGCTTTTCTC
1 CATCTGACCATAATATTTTTTTTCTTCAAAAGTCTGCAACATCAATGTCTTGTCATGCTTTTCTC
14240584 ATCCTTTTT
66 ATCCTTTTT
14240593 CATCTGACCATAATA-TTTTTTTCTTCAAAAGTCTGCAACATCAATGTCTTGTCATGCTTTTCTC
1 CATCTGACCATAATATTTTTTTTCTTCAAAAGTCTGCAACATCAATGTCTTGTCATGCTTTTCTC
14240657 ATCCTTTTT
66 ATCCTTTTT
14240666 CAT
1 CAT
14240669 TTTCCTTTGT
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
73 61 0.80
74 15 0.20
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.45
Consensus pattern (74 bp):
CATCTGACCATAATATTTTTTTTCTTCAAAAGTCTGCAACATCAATGTCTTGTCATGCTTTTCTC
ATCCTTTTT
Found at i:14241097 original size:8 final size:8
Alignment explanation
Indices: 14241084--14241117 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
14241074 AGATGAGTCA
14241084 TTATTTTT
1 TTATTTTT
14241092 TTATTTTT
1 TTATTTTT
*
14241100 TTCTTTTT
1 TTATTTTT
*
14241108 TTCTTTTT
1 TTATTTTT
14241116 TT
1 TT
14241118 TTTCAGCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.06, C:0.06, G:0.00, T:0.88
Consensus pattern (8 bp):
TTATTTTT
Found at i:14249733 original size:22 final size:21
Alignment explanation
Indices: 14249698--14249738 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
14249688 ATGTGTGTGA
14249698 ATTTTTTTGCTTTTTATTTTTG
1 ATTTTTTTGCTTTTT-TTTTTG
14249720 ATTTGTTTTG-TTTTTTTTT
1 ATTT-TTTTGCTTTTTTTTT
14249739 ACCTTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 9 0.50
23 5 0.28
ACGTcount: A:0.07, C:0.02, G:0.10, T:0.80
Consensus pattern (21 bp):
ATTTTTTTGCTTTTTTTTTTG
Found at i:14250986 original size:237 final size:234
Alignment explanation
Indices: 14250495--14250942 Score: 532
Period size: 237 Copynumber: 1.9 Consensus size: 234
14250485 TATTGAAATT
* * **
14250495 TTGAAGAAAAAGGAA-TTTAATTATATTGAAGATTTTATATAAATATTCCAATACGTTGGTAATA
1 TTGAAGAAAAAGAAATTTTTATTATATTGAAGATTTTATATAAATATTCCAATACACTGGTAATA
* * * * *
14250559 TTTTATAAAAAATCTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCGGAATACTTTTGGAAT
66 TTTTATAAAAAATCTTCTCACCTAAAGATTTCGTAAAGCATCACTACTCGAAATACCTTTGGAAT
* * * * *
14250624 CCTATCATTGGATTAAATTTTTTTCTTCTCATTTTTATTACTTATTTTTAATATATTAATCAATT
131 CCTATCATCGGATAAAATTTTTTTCTTCACATTTTTATTACTTAGTATTAATATATTAATCAATT
* *
14250689 TTTATTTATTATTTTAAAAAAAGAAATTTTTATTTAACAAA
196 TTTATTTATTATTTT--AAAAAGAAATTTTAAATTAACAAA
*
14250730 TTGAAGAAAAATGAAATTTTTATTATATTGAAGATTTTCTATAAATATTCCAATACACTGGTAAT
1 TTGAAGAAAAA-GAAATTTTTATTATATTGAAGATTTTATATAAATATTCCAATACACTGGTAAT
* *
14250795 ATTTTATAAAAAATCTTCTCACCTAAAGATTTCGT-AGGTATCACTACTCGAAATACCTTT-GAA
65 ATTTTATAAAAAATCTTCTCACCTAAAGATTTCGTAAAGCATCACTACTCGAAATACCTTTGGAA
* *
14250858 T-CTCATCGTCGGATAAAAATTTCATTTTCTT-ACATTTTTTATTAGTTTAGTATT-AT-TATTA
130 TCCT-ATCATCGGAT-AAAATTT--TTTTCTTCACA-TTTTTATTA-CTTAGTATTAATATATT-
** *
14250919 AATTTATTTTTATATTATTGTTTT
188 AATCAATTTTTAT-TTATTATTTT
14250943 TAAAGTTTAT
Statistics
Matches: 181, Mismatches: 22, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
234 2 0.01
235 23 0.13
236 29 0.16
237 83 0.46
238 29 0.16
239 15 0.08
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.45
Consensus pattern (234 bp):
TTGAAGAAAAAGAAATTTTTATTATATTGAAGATTTTATATAAATATTCCAATACACTGGTAATA
TTTTATAAAAAATCTTCTCACCTAAAGATTTCGTAAAGCATCACTACTCGAAATACCTTTGGAAT
CCTATCATCGGATAAAATTTTTTTCTTCACATTTTTATTACTTAGTATTAATATATTAATCAATT
TTTATTTATTATTTTAAAAAGAAATTTTAAATTAACAAA
Found at i:14251674 original size:22 final size:22
Alignment explanation
Indices: 14251635--14251686 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 22
14251625 GTGAGACTAT
*
14251635 TTTTTTTTTATATCCTAACCCCCC
1 TTTTTTTTTATATACTAA--CCCC
14251659 TTTTTTTTTA-A-ACTAACCCC
1 TTTTTTTTTATATACTAACCCC
14251679 TTTTTTTT
1 TTTTTTTT
14251687 CTCTTCTTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 12 0.44
22 4 0.15
23 1 0.04
24 10 0.37
ACGTcount: A:0.17, C:0.25, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTTTTTTTATATACTAACCCC
Found at i:14252112 original size:20 final size:20
Alignment explanation
Indices: 14252084--14252127 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14252074 TTTTTTTTTG
*
14252084 TATTTTTTTATAT-TATTTCA
1 TATTATTTTAT-TGTATTTCA
*
14252104 TATTATTTTATTGTATTTCG
1 TATTATTTTATTGTATTTCA
14252124 TATT
1 TATT
14252128 TTATACTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (20 bp):
TATTATTTTATTGTATTTCA
Found at i:14253069 original size:2 final size:2
Alignment explanation
Indices: 14253062--14253093 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14253052 GTTGATTCCT
14253062 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14253094 ATTTAACACG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14253386 original size:2 final size:2
Alignment explanation
Indices: 14253379--14253414 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
14253369 GGTTTAATCT
14253379 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14253415 GGGATCAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14263889 original size:18 final size:18
Alignment explanation
Indices: 14263866--14263901 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14263856 GATTTTGAAC
14263866 TTCAAACTTCATTGTTAA
1 TTCAAACTTCATTGTTAA
*
14263884 TTCAAACTTTATTGTTAA
1 TTCAAACTTCATTGTTAA
14263902 CTTGAATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47
Consensus pattern (18 bp):
TTCAAACTTCATTGTTAA
Found at i:14268925 original size:27 final size:28
Alignment explanation
Indices: 14268890--14268942 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
14268880 GTGTAATGTA
*
14268890 ACCATTTTTTAACCAAGTTTACCATTTG
1 ACCATTTTTTAACCAAATTTACCATTTG
14268918 ACCA-TTTTTAACCAAATTTACCATT
1 ACCATTTTTTAACCAAATTTACCATT
14268943 CTTTTTTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.42
Consensus pattern (28 bp):
ACCATTTTTTAACCAAATTTACCATTTG
Found at i:14271927 original size:5 final size:5
Alignment explanation
Indices: 14271897--14271925 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
14271887 TTAATCCAAG
14271897 CTTTT CTTTT CTTTT CTTTT CTTTT -TTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
14271926 TTGTCTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
CTTTT
Found at i:14281812 original size:42 final size:43
Alignment explanation
Indices: 14281755--14281842 Score: 108
Period size: 42 Copynumber: 2.0 Consensus size: 43
14281745 ACTTTTAACT
*
14281755 ACATTTTTGAAGTTAGAAACATGACTTTT-TAATACAAAGACC
1 ACATTTTTGAAGTTAGAAACATAACTTTTGTAATACAAAGACC
* *
14281797 ACATTTTT-AATGTTAGAAATATAATTTTTGAGTAATACAAAGACC
1 ACATTTTTGAA-GTTAGAAACATAACTTTT--GTAATACAAAGACC
14281842 A
1 A
14281843 TGTTTCTGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
41 2 0.05
42 23 0.59
45 14 0.36
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.35
Consensus pattern (43 bp):
ACATTTTTGAAGTTAGAAACATAACTTTTGTAATACAAAGACC
Found at i:14284074 original size:7 final size:6
Alignment explanation
Indices: 14284055--14284230 Score: 86
Period size: 7 Copynumber: 27.0 Consensus size: 6
14284045 TTAGGGTTCA
* * *
14284055 AGGTTA AGGTTT AGGTTTT AGGATTT AAGGTTT AGGGTT AGGATTT AGGTCT
1 AGGTTT AGGTTT AGG-TTT AGG-TTT -AGGTTT AGGTTT AGG-TTT AGGTTT
* * * *
14284107 AGGTTT AGGGTTT AGGGTTT ATGTTT AAGGTTT GGGATTT GGGGTTT A-GATT
1 AGGTTT A-GGTTT A-GGTTT AGGTTT -AGGTTT AGG-TTT -AGGTTT AGGTTT
** *
14284159 AGGGTTT AAATTT AGGTTT AGGGTTT -GGTTTT AAGGTTT AAGGTTT GGGATTT
1 A-GGTTT AGGTTT AGGTTT A-GGTTT AGG-TTT -AGGTTT -AGGTTT AGG-TTT
* *
14284212 AGGGTT AGGGTTT TGGTTT
1 AGGTTT A-GGTTT AGGTTT
14284231 GGAAATGCAT
Statistics
Matches: 134, Mismatches: 21, Indels: 30
0.72 0.11 0.16
Matches are distributed among these distances:
5 6 0.04
6 51 0.38
7 69 0.51
8 8 0.06
ACGTcount: A:0.19, C:0.01, G:0.35, T:0.45
Consensus pattern (6 bp):
AGGTTT
Found at i:14284074 original size:27 final size:27
Alignment explanation
Indices: 14284032--14284103 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
14284022 GGGTATAGGG
** *
14284032 TAAGGGTTTCGATTTAGGGTTCAAGGT
1 TAAGGGTTAGGATTTAGGATTCAAGGT
* * *
14284059 TAAGGTTTAGGTTTTAGGATTTAAGGT
1 TAAGGGTTAGGATTTAGGATTCAAGGT
*
14284086 TTAGGGTTAGGATTTAGG
1 TAAGGGTTAGGATTTAGG
14284104 TCTAGGTTTA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.24, C:0.03, G:0.33, T:0.40
Consensus pattern (27 bp):
TAAGGGTTAGGATTTAGGATTCAAGGT
Found at i:14284103 original size:13 final size:12
Alignment explanation
Indices: 14284012--14284118 Score: 54
Period size: 13 Copynumber: 8.2 Consensus size: 12
14284002 ATTGGATCAA
*
14284012 GTTAGTTTTAGG
1 GTTAGGTTTAGG
* *
14284024 GTATAGGGTAAGG
1 GT-TAGGTTTAGG
* *
14284037 GTTTCGATTTAGG
1 G-TTAGGTTTAGG
*
14284050 GTTCAAGGTTAAGG
1 GTT--AGGTTTAGG
*
14284064 TTTAGGTTTTAGG
1 GTTAGG-TTTAGG
*
14284077 ATTTAAGGTTTAGG
1 -GTT-AGGTTTAGG
14284091 GTTAGGATTTA-G
1 GTTAGG-TTTAGG
14284103 GTCTAGGTTTAGG
1 GT-TAGGTTTAGG
14284116 GTT
1 GTT
14284119 TAGGGTTTAT
Statistics
Matches: 72, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
12 18 0.25
13 33 0.46
14 18 0.25
15 3 0.04
ACGTcount: A:0.21, C:0.03, G:0.35, T:0.41
Consensus pattern (12 bp):
GTTAGGTTTAGG
Found at i:14284122 original size:13 final size:13
Alignment explanation
Indices: 14284056--14284217 Score: 98
Period size: 13 Copynumber: 12.3 Consensus size: 13
14284046 TAGGGTTCAA
*
14284056 GGTTAAGGTTTAG
1 GGTTTAGGTTTAG
* *
14284069 GTTTTAGGATTTAA
1 GGTTTAGG-TTTAG
*
14284083 GGTTTAGGGTTAG
1 GGTTTAGGTTTAG
* *
14284096 GATTTAGGTCTA-
1 GGTTTAGGTTTAG
14284108 GGTTTAGGGTTTAG
1 GGTTTA-GGTTTAG
* *
14284122 GGTTTATGTTTAA
1 GGTTTAGGTTTAG
* *
14284135 GGTTTGGGATTTGG
1 GGTTTAGG-TTTAG
*
14284149 GGTTTA-GATTAG
1 GGTTTAGGTTTAG
**
14284161 GGTTTAAATTTA-
1 GGTTTAGGTTTAG
14284173 GGTTTAGGGTTT-G
1 GGTTTA-GGTTTAG
* *
14284186 GTTTTAAGGTTTAA
1 GGTTT-AGGTTTAG
*
14284200 GGTTTGGGATTTAG
1 GGTTTAGG-TTTAG
14284214 GGTT
1 GGTT
14284218 AGGGTTTTGG
Statistics
Matches: 110, Mismatches: 29, Indels: 19
0.70 0.18 0.12
Matches are distributed among these distances:
12 20 0.18
13 52 0.47
14 38 0.35
ACGTcount: A:0.20, C:0.01, G:0.35, T:0.45
Consensus pattern (13 bp):
GGTTTAGGTTTAG
Found at i:14284138 original size:20 final size:20
Alignment explanation
Indices: 14284044--14284230 Score: 104
Period size: 20 Copynumber: 9.4 Consensus size: 20
14284034 AGGGTTTCGA
* *
14284044 TTTAGGGTTCAAGG-TTAAGG
1 TTTA-GGTTTAAGGTTTAGGG
* *
14284064 TTTAGGTTTTAGGATTTAAGG
1 TTTAGGTTTAAGG-TTTAGGG
*
14284085 TTTAGGGTT-AGGATTTA-GG
1 TTTAGGTTTAAGG-TTTAGGG
* *
14284104 TCTAGGTTTAGGGTTTAGGG
1 TTTAGGTTTAAGGTTTAGGG
*
14284124 TTTATGTTTAAGGTTT-GGG
1 TTTAGGTTTAAGGTTTAGGG
* *
14284143 ATTTGGGGTTT-A-GATTAGGG
1 -TTT-AGGTTTAAGGTTTAGGG
**
14284163 TTTAAATTT-AGGTTTAGGG
1 TTTAGGTTTAAGGTTTAGGG
*
14284182 TTT-GGTTTTAAGGTTTAAGG
1 TTTAGG-TTTAAGGTTTAGGG
* *
14284202 TTTGGGATTT-AGGGTTAGGG
1 TTTAGG-TTTAAGGTTTAGGG
*
14284222 TTTTGGTTT
1 TTTAGGTTT
14284231 GGAAATGCAT
Statistics
Matches: 133, Mismatches: 23, Indels: 23
0.74 0.13 0.13
Matches are distributed among these distances:
18 4 0.03
19 45 0.34
20 61 0.46
21 23 0.17
ACGTcount: A:0.19, C:0.01, G:0.34, T:0.45
Consensus pattern (20 bp):
TTTAGGTTTAAGGTTTAGGG
Found at i:14286290 original size:13 final size:13
Alignment explanation
Indices: 14286272--14286297 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14286262 AAATCTTAAA
14286272 ATAATATGAAATT
1 ATAATATGAAATT
14286285 ATAATATGAAATT
1 ATAATATGAAATT
14286298 TTTCATGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (13 bp):
ATAATATGAAATT
Found at i:14286508 original size:141 final size:142
Alignment explanation
Indices: 14286320--14286698 Score: 430
Period size: 143 Copynumber: 2.6 Consensus size: 142
14286310 CGGATCTCAA
* *
14286320 AAAGATCAAATTACAAAAAAACCTTTACAAGGGTATTTTAGTAATTTCACACCTTTTAAGGTACG
1 AAAG-TCAAATTACAAAAATACCTTTA-AA-GGTATTTTAGTAATTTCATACCTTTTAAGGTACG
* * *
14286385 ATCAAGGTTTTTAATGCACCAAAAATCATAGATAATATGAAAA-CATGGTTTGGAG-TGTTTCAC
63 ATCAAGGTTTTTAATGCACCAAAAATCATAGATAATAT-AAAATCATGATATGCAGCT-TTTCAC
* *
14286448 AAAGAAC-GACCTT-GG
126 AAAAAACTGACATTAGG
* * * *
14286463 AAAGTCAAATTATAAAAATACCCTTTAAAGGTATTTTAGTAATTTCATA-CTTTTCGAGATGCGA
1 AAAGTCAAATTACAAAAATA-CCTTTAAAGGTATTTTAGTAATTTCATACCTTTT-AAGGTACGA
*
14286527 TCAAGGTTTTTAATGCACCAAAAATCAATAGATAATATAAAATCATGATATGCAGCTTTTCATAA
64 TCAAGGTTTTTAATGCACCAAAAATC-ATAGATAATATAAAATCATGATATGCAGCTTTTCACAA
14286592 AAAACTGACATTAGG
128 AAAACTGACATTAGG
* * * * * *
14286607 AATGTCAAATTAGAAAAATA-CTTCTAAGGGTATTTTAGTAATTTTATACCTTTTAGGGTATGAT
1 AAAGTCAAATTACAAAAATACCTT-TAAAGGTATTTTAGTAATTTCATACCTTTTAAGGTACGAT
* * *
14286671 -TAGAGTTTTTGATGCATCAAAAATCATA
65 CAAG-GTTTTTAATGCACCAAAAATCATA
14286699 AAATATTATT
Statistics
Matches: 202, Mismatches: 24, Indels: 21
0.82 0.10 0.09
Matches are distributed among these distances:
140 5 0.02
141 55 0.27
142 55 0.27
143 62 0.31
144 25 0.12
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33
Consensus pattern (142 bp):
AAAGTCAAATTACAAAAATACCTTTAAAGGTATTTTAGTAATTTCATACCTTTTAAGGTACGATC
AAGGTTTTTAATGCACCAAAAATCATAGATAATATAAAATCATGATATGCAGCTTTTCACAAAAA
ACTGACATTAGG
Found at i:14290102 original size:41 final size:42
Alignment explanation
Indices: 14290057--14290135 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 42
14290047 AAAGACTACA
* *
14290057 TTTTAAACACAAAAAACATCAT-TTTGTTAACAATCATTGTG
1 TTTTAAACAAAAAAAAAATCATCTTTGTTAACAATCATTGTG
* *
14290098 TTTTAAACAAAAAAAAAATCGTCTTTGTTAATAATCAT
1 TTTTAAACAAAAAAAAAATCATCTTTGTTAACAATCAT
14290136 GGACCAATGT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 19 0.58
42 14 0.42
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (42 bp):
TTTTAAACAAAAAAAAAATCATCTTTGTTAACAATCATTGTG
Found at i:14290444 original size:24 final size:24
Alignment explanation
Indices: 14290416--14290558 Score: 134
Period size: 24 Copynumber: 6.0 Consensus size: 24
14290406 ACAAGTTTAT
14290416 CTTGTATAAATGATA-AATTTTGGA
1 CTTGTATAAATGA-ACAATTTTGGA
* *
14290440 TTTGTATAAATAGAACAA-ATTGGA
1 CTTGTATAAAT-GAACAATTTTGGA
* * *
14290464 CTTGTATAAA-CAATATAATTTGGA
1 CTTGTATAAATGAACA-ATTTTGGA
* * *
14290488 TTTGTATATATGAACAATTTTGCA
1 CTTGTATAAATGAACAATTTTGGA
14290512 CTTGTATAAATGAATCAATTTT-GA
1 CTTGTATAAATGAA-CAATTTTGGA
*
14290536 CTTGTATTAATGAA-AATTTTGGA
1 CTTGTATAAATGAACAATTTTGGA
14290559 ATCATTTCAA
Statistics
Matches: 96, Mismatches: 16, Indels: 15
0.76 0.13 0.12
Matches are distributed among these distances:
22 9 0.09
23 3 0.03
24 70 0.73
25 14 0.15
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.41
Consensus pattern (24 bp):
CTTGTATAAATGAACAATTTTGGA
Found at i:14293739 original size:24 final size:25
Alignment explanation
Indices: 14293693--14293740 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
14293683 CTTCACAATG
* *
14293693 ATTGTTTCCAAATAGTTATTGTATT
1 ATTGTTTCCAAATAATTAATGTATT
*
14293718 ATTG-TTCTAAATAATTAATGTAT
1 ATTGTTTCCAAATAATTAATGTAT
14293741 CCAGTTCATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.50
Consensus pattern (25 bp):
ATTGTTTCCAAATAATTAATGTATT
Found at i:14294788 original size:17 final size:18
Alignment explanation
Indices: 14294748--14294788 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
14294738 ATTTATATAC
14294748 ATATAAACATAGTGTTTG
1 ATATAAACATAGTGTTTG
14294766 ATATAAACACTA-TGTTT-
1 ATATAAACA-TAGTGTTTG
14294783 ATATAA
1 ATATAA
14294789 GAAAATTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.27
18 14 0.64
19 2 0.09
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (18 bp):
ATATAAACATAGTGTTTG
Found at i:14297094 original size:20 final size:19
Alignment explanation
Indices: 14297034--14297101 Score: 68
Period size: 19 Copynumber: 3.5 Consensus size: 19
14297024 TAAATTTAGA
*
14297034 GTTTCACCTAGGG-TTTCAG
1 GTTTTACCT-GGGCTTTCAG
*
14297053 GTTTTACTTGGGCTTT-AGG
1 GTTTTACCTGGGCTTTCA-G
14297072 GTTTTACCTGGGACTTTCAG
1 GTTTTACCTGGG-CTTTCAG
*
14297092 GTTTCACCTG
1 GTTTTACCTG
14297102 TGGTTTAGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
18 4 0.10
19 22 0.54
20 14 0.34
21 1 0.02
ACGTcount: A:0.13, C:0.19, G:0.26, T:0.41
Consensus pattern (19 bp):
GTTTTACCTGGGCTTTCAG
Found at i:14297370 original size:3 final size:3
Alignment explanation
Indices: 14297362--14297408 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
14297352 TATTAAAATT
14297362 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14297409 ATTTTTTCTT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14297725 original size:19 final size:19
Alignment explanation
Indices: 14297701--14297737 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14297691 CATGTATCAG
14297701 TAACAACAATAATAATAAA
1 TAACAACAATAATAATAAA
* *
14297720 TAACAATAATAATGATAA
1 TAACAACAATAATAATAA
14297738 TGCAAAAAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.08, G:0.03, T:0.24
Consensus pattern (19 bp):
TAACAACAATAATAATAAA
Found at i:14300058 original size:183 final size:184
Alignment explanation
Indices: 14299801--14300169 Score: 564
Period size: 183 Copynumber: 2.0 Consensus size: 184
14299791 TATTTAAAAA
* * *
14299801 AATCTAATTTAAATTTTATGGGTGAGACATATACCTTATCCATCCAGCCAAAATCTTATAGAATT
1 AATCAAATTTAAATTTTATAGGTGAGACATATA-CTTATCCATCCAGCCAAAACCTTATAGAATT
* *
14299866 TGAATTTATTTTCTTTTCAGATTTTGTCGTTGTCCTCTGTTCTTAATTACAGTAAATGCTAGAAT
65 TGAATTTATTTTCTTTTCAGATTTTGTCGTTGTCCTCTCTTCTTAATTACAATAAATGCTAGAAT
* *
14299931 TCAT-AATAAAAGGATAATGCCAGAGGATGGATGTGCCAT-CCTGAATAAAATAGTC
130 TCATCAA-AAAA-GATAATGCCAGAAGATGGATGTACCATGCCTGAATAAAATAGTC
* *
14299986 AATCAAATTTAAATTTTATAGGTGAGACATAT-CTTATCCATCCGGCCAAAACCTTATAGGATTT
1 AATCAAATTTAAATTTTATAGGTGAGACATATACTTATCCATCCAGCCAAAACCTTATAGAATTT
* *
14300050 GAATTTATTTTCTTTTCAGATTTTGTGGTTGTCGTCTCTTCTTAATTACAATAAATGCTAGAATT
66 GAATTTATTTTCTTTTCAGATTTTGTCGTTGTCCTCTCTTCTTAATTACAATAAATGCTAGAATT
* * *
14300115 CATCGAAAAAGATAATGCCATAAGATGGATGTACCATGTCTGAATAAAATAGTC
131 CATCAAAAAAGATAATGCCAGAAGATGGATGTACCATGCCTGAATAAAATAGTC
14300169 A
1 A
14300170 CGTTGGTAAG
Statistics
Matches: 168, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
182 24 0.14
183 113 0.67
184 1 0.01
185 30 0.18
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (184 bp):
AATCAAATTTAAATTTTATAGGTGAGACATATACTTATCCATCCAGCCAAAACCTTATAGAATTT
GAATTTATTTTCTTTTCAGATTTTGTCGTTGTCCTCTCTTCTTAATTACAATAAATGCTAGAATT
CATCAAAAAAGATAATGCCAGAAGATGGATGTACCATGCCTGAATAAAATAGTC
Found at i:14302184 original size:12 final size:12
Alignment explanation
Indices: 14302167--14302193 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
14302157 TCTTTATATA
14302167 TATATATGTATG
1 TATATATGTATG
14302179 TATATATGTATG
1 TATATATGTATG
14302191 TAT
1 TAT
14302194 GTATATGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (12 bp):
TATATATGTATG
Found at i:14302184 original size:16 final size:16
Alignment explanation
Indices: 14302163--14302199 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
14302153 TTAATCTTTA
14302163 TATATATATATGTATG
1 TATATATATATGTATG
*
14302179 TATATATGTATGTATG
1 TATATATATATGTATG
14302195 TATAT
1 TATAT
14302200 GGGGAGGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (16 bp):
TATATATATATGTATG
Done.