Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 80 of 147
Found at i:14742559 original size:21 final size:20
Alignment explanation
Indices: 14742535--14742598 Score: 51
Period size: 21 Copynumber: 3.0 Consensus size: 20
14742525 TTCTCTATTC
14742535 TTTTTATTTATTTTTATTAAA
1 TTTTTATTT-TTTTTATTAAA
14742556 -TTTTATTTTGTTTTTAATT-AA
1 TTTTTA-TTT-TTTTT-ATTAAA
* *
14742577 TTTATTAATTTTTTTATCAAA
1 TTT-TTATTTTTTTTATTAAA
14742598 T
1 T
14742599 AAATTAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
20 7 0.20
21 18 0.51
22 7 0.20
23 3 0.09
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTTATTTTTTTTATTAAA
Found at i:14742561 original size:20 final size:20
Alignment explanation
Indices: 14742536--14742589 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
14742526 TCTCTATTCT
14742536 TTTTATTTATTTTT-ATTAAA
1 TTTTATTTATTTTTAATT-AA
*
14742556 TTTTATTTTGTTTTTAATTAA
1 TTTTA-TTTATTTTTAATTAA
*
14742577 -TTTATTAATTTTT
1 TTTTATTTATTTTT
14742590 TTATCAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 7 0.24
20 9 0.31
21 10 0.34
22 3 0.10
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (20 bp):
TTTTATTTATTTTTAATTAA
Found at i:14743528 original size:21 final size:21
Alignment explanation
Indices: 14743480--14743528 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
14743470 TTAATTTAAT
*
14743480 AAAAAACTATATTTATATATA
1 AAAAAATTATATTTATATATA
**
14743501 ATTAAATTATAATTTATAT-TA
1 AAAAAATTAT-ATTTATATATA
14743522 AAAAAAT
1 AAAAAAT
14743529 AAACACACTT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAAAATTATATTTATATATA
Found at i:14754900 original size:31 final size:32
Alignment explanation
Indices: 14754865--14754941 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 32
14754855 AATTGACTTT
14754865 TATTTTTATTATTT-GTCTATTTAT-TAATATA
1 TATTTTTATTATTTAGTCTATTTATCTAATA-A
* * * *
14754896 TATTTTTATT-TTTATTTTTTTTATCTATTAA
1 TATTTTTATTATTTAGTCTATTTATCTAATAA
14754927 TATTTTTATTATTTA
1 TATTTTTATTATTTA
14754942 TCTGCTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
30 3 0.08
31 28 0.72
32 8 0.21
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (32 bp):
TATTTTTATTATTTAGTCTATTTATCTAATAA
Found at i:14754953 original size:39 final size:40
Alignment explanation
Indices: 14754907--14755016 Score: 118
Period size: 40 Copynumber: 2.7 Consensus size: 40
14754897 ATTTTTATTT
**
14754907 TTATTTTTTTTATCTATTAATATTTTTATTATTTATCTGC
1 TTATTTTTTTTATCTATTAATATTTTTATTATTTATCTAA
*
14754947 TT-TTTTTTTTAT-TATTTATCAATTTCTT-TTATTTATCTAA
1 TTATTTTTTTTATCTATTAAT--ATTT-TTATTATTTATCTAA
* *
14754987 TTATTTTTTGTTTTCTATTAATATATTTAT
1 TTATTTTTT-TTATCTATTAATATTTTTAT
14755017 CTTTTTTATT
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
38 6 0.11
39 10 0.18
40 20 0.35
41 12 0.21
42 3 0.05
43 6 0.11
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (40 bp):
TTATTTTTTTTATCTATTAATATTTTTATTATTTATCTAA
Found at i:14754976 original size:23 final size:23
Alignment explanation
Indices: 14754929--14754982 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
14754919 TCTATTAATA
**
14754929 TTTTTATTATTTATCTGCTTTTT
1 TTTTTATTATTTATCTAATTTTT
14754952 TTTTTATTATTTATC-AATTTCTT
1 TTTTTATTATTTATCTAATTT-TT
14754975 TTATTTAT
1 TT-TTTAT
14754983 CTAATTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 3 0.11
23 19 0.70
24 5 0.19
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.72
Consensus pattern (23 bp):
TTTTTATTATTTATCTAATTTTT
Found at i:14755776 original size:9 final size:8
Alignment explanation
Indices: 14755759--14755814 Score: 60
Period size: 9 Copynumber: 6.8 Consensus size: 8
14755749 AAATTTTTGG
14755759 TATTTTTT
1 TATTTTTT
14755767 TATTTATTT
1 TATTT-TTT
14755776 TATTTTATT
1 TATTTT-TT
14755785 TATTTGTTT
1 TATTT-TTT
* *
14755794 TACTTGTT
1 TATTTTTT
14755802 T-TTTTTT
1 TATTTTTT
14755809 TATTTT
1 TATTTT
14755815 ATCAAAATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
7 5 0.12
8 13 0.32
9 21 0.52
10 1 0.03
ACGTcount: A:0.14, C:0.02, G:0.04, T:0.80
Consensus pattern (8 bp):
TATTTTTT
Found at i:14761452 original size:18 final size:19
Alignment explanation
Indices: 14761426--14761461 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14761416 TCAGATGGTT
*
14761426 ATAA-TTTTTTGAATAATC
1 ATAACTTTTATGAATAATC
14761444 ATAACTTTTATGAATAAT
1 ATAACTTTTATGAATAAT
14761462 AATTTATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.47
Consensus pattern (19 bp):
ATAACTTTTATGAATAATC
Found at i:14762984 original size:14 final size:14
Alignment explanation
Indices: 14762964--14762993 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
14762954 TTTTTATATT
14762964 ATATTTTT-TAAAA
1 ATATTTTTATAAAA
14762977 ATATTTTTATAAAA
1 ATATTTTTATAAAA
14762991 ATA
1 ATA
14762994 ATATAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATATTTTTATAAAA
Found at i:14764309 original size:14 final size:14
Alignment explanation
Indices: 14764290--14764327 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
14764280 AAAATTTTTA
14764290 AAAAATATTTACAC
1 AAAAATATTTACAC
**
14764304 AAAAATATTTTTAC
1 AAAAATATTTACAC
14764318 -AAAATATTTA
1 AAAAATATTTA
14764328 ATTTTTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (14 bp):
AAAAATATTTACAC
Found at i:14764639 original size:30 final size:30
Alignment explanation
Indices: 14764579--14764645 Score: 111
Period size: 29 Copynumber: 2.3 Consensus size: 30
14764569 GTTGTTATAC
14764579 TTAATT-AAATCTTTAAAATATTATTTTAT
1 TTAATTAAAATCTTTAAAATATTATTTTAT
14764608 TTAATTAAAAT-TTTAAAATATTATGTTTAT
1 TTAATTAAAATCTTTAAAATATTAT-TTTAT
14764638 TTAATTAA
1 TTAATTAA
14764646 GCCCTTGTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
29 19 0.53
30 17 0.47
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (30 bp):
TTAATTAAAATCTTTAAAATATTATTTTAT
Found at i:14765698 original size:2 final size:2
Alignment explanation
Indices: 14765691--14765715 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14765681 GCTTTAACAA
14765691 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14765716 AAGCAGTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14779558 original size:22 final size:22
Alignment explanation
Indices: 14779533--14779574 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
14779523 CCTCTTGGAT
14779533 CACCATCTCCCCTAAAAAGCCA
1 CACCATCTCCCCTAAAAAGCCA
14779555 CACCATCTCCCCTAAAAAGC
1 CACCATCTCCCCTAAAAAGC
14779575 TAACATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.45, G:0.05, T:0.14
Consensus pattern (22 bp):
CACCATCTCCCCTAAAAAGCCA
Found at i:14780467 original size:49 final size:49
Alignment explanation
Indices: 14780389--14780494 Score: 117
Period size: 49 Copynumber: 2.2 Consensus size: 49
14780379 TTATATGTTT
* **
14780389 TAATTTTTCTTACCTATACCGATAGTTAGC-TCTTTTCAGTATAGACTTG
1 TAATTTTTCATACCTATACCGATAGTTAGCATCCATT-AGTATAGACTTG
* * *
14780438 TAATTTTTCATACTTATACTGAT-GCTTAGCATCCATTAGTATAGCCTTG
1 TAATTTTTCATACCTATACCGATAG-TTAGCATCCATTAGTATAGACTTG
*
14780487 TATTTTTT
1 TAATTTTT
14780495 AATTTGCTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
48 1 0.02
49 43 0.90
50 4 0.08
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (49 bp):
TAATTTTTCATACCTATACCGATAGTTAGCATCCATTAGTATAGACTTG
Found at i:14780508 original size:160 final size:160
Alignment explanation
Indices: 14780206--14780569 Score: 371
Period size: 160 Copynumber: 2.3 Consensus size: 160
14780196 TGTTAACACT
* * *
14780206 TGTCAATATAAACTTGTATGTTTTAATTTTTTTTACCTATA-CGATGGTTAATGCCCGTCAATAT
1 TGTCAGTATAGACTTGTATGTTTTAA-TTTTTTTACCTATACCGATAGTTAATGCCCGTCAATAT
* * *
14780270 AGACTTATAATTTTTCTTACCTATATTGATACTTAAAGCCTGTCAATATAGATTTGTATATTTTA
65 AGACTTATAATTTTTCATACCTATACTGATACTTAAAGCCTGTCAATATAGACTTGTATATTTTA
** * * *
14780335 ATTTTTTTTACCTATATCGACAACTAGTGCC
130 ATTTTGCTTACCTATATCAACAACTAGAGAC
* ** *
14780366 TGTCAGTATAGACTTATATGTTTTAATTTTTCTTACCTATACCGATAGTT-A-GCTCTTTTCAGT
1 TGTCAGTATAGACTTGTATGTTTTAATTTTT-TTACCTATACCGATAGTTAATGC-C-CGTCAAT
* * * * * * * *
14780429 ATAGACTTGTAATTTTTCATACTTATACTGATGCTTAGCATCCAT-T-AGTATAGCCTTGTATTT
63 ATAGACTTATAATTTTTCATACCTATACTGATACTTA-AAGCC-TGTCAATATAGACTTGTATAT
* **
14780492 TTTAA-TTTGCTTACCTATATCAATAGTTAGAGAC
126 TTTAATTTTGCTTACCTATATCAACAACTAGAGAC
* * *
14780526 TATAAGTATAGACTTGTATATTTTAATTTTTTTACCTATACCGA
1 TGTCAGTATAGACTTGTATGTTTTAATTTTTTTACCTATACCGA
14780570 CGACTAGTGA
Statistics
Matches: 168, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
159 20 0.12
160 82 0.49
161 61 0.36
162 4 0.02
163 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.11, T:0.45
Consensus pattern (160 bp):
TGTCAGTATAGACTTGTATGTTTTAATTTTTTTACCTATACCGATAGTTAATGCCCGTCAATATA
GACTTATAATTTTTCATACCTATACTGATACTTAAAGCCTGTCAATATAGACTTGTATATTTTAA
TTTTGCTTACCTATATCAACAACTAGAGAC
Found at i:14794298 original size:22 final size:22
Alignment explanation
Indices: 14794268--14794310 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14794258 TTCCACCACT
* *
14794268 TTTTTTTTAATTATTTGTTTAA
1 TTTTATTTAATTATTTATTTAA
*
14794290 TTTTATTTATTTATTTATTTA
1 TTTTATTTAATTATTTATTTA
14794311 TTGTTTTTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTATTTAATTATTTATTTAA
Found at i:14794299 original size:18 final size:18
Alignment explanation
Indices: 14794272--14794306 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14794262 ACCACTTTTT
*
14794272 TTTTAATTATTTGTTTAA
1 TTTTAATTATTTATTTAA
*
14794290 TTTTATTTATTTATTTA
1 TTTTAATTATTTATTTA
14794307 TTTATTGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTTAATTATTTATTTAA
Found at i:14798653 original size:2 final size:2
Alignment explanation
Indices: 14798646--14798674 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14798636 AAAAGGACAA
14798646 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
14798675 ATGAGATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14802116 original size:18 final size:18
Alignment explanation
Indices: 14802089--14802133 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
14802079 ATGAATTCGA
14802089 GTTT-GGGTTTAAGGTTG
1 GTTTAGGGTTTAAGGTTG
**
14802106 GTTTAGGGTTTGGGGTTG
1 GTTTAGGGTTTAAGGTTG
*
14802124 GTTTAAGGTT
1 GTTTAGGGTT
14802134 GACATTAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.11, C:0.00, G:0.42, T:0.47
Consensus pattern (18 bp):
GTTTAGGGTTTAAGGTTG
Found at i:14802185 original size:20 final size:20
Alignment explanation
Indices: 14802162--14802285 Score: 65
Period size: 20 Copynumber: 6.2 Consensus size: 20
14802152 TAGAGTTTTT
14802162 GGTTTAGGATTTTGGTTTGG
1 GGTTTAGGATTTTGGTTTGG
* *
14802182 GGTTTAGGATATTGAGTTT-T
1 GGTTTAGGATTTTG-GTTTGG
* *** *
14802202 GGTTTAGGGTTTCAATTTAG
1 GGTTTAGGATTTTGGTTTGG
***
14802222 GGTTTA-GAGTTAAAGTTTGG
1 GGTTTAGGA-TTTTGGTTTGG
* * * *
14802242 GCTTTAAGATTTTGTTTTAG
1 GGTTTAGGATTTTGGTTTGG
*
14802262 GGTTTAGTG-TTTTGATTTGG
1 GGTTTAG-GATTTTGGTTTGG
14802282 GGTT
1 GGTT
14802286 AGAGTTAGGT
Statistics
Matches: 76, Mismatches: 23, Indels: 10
0.70 0.21 0.09
Matches are distributed among these distances:
19 4 0.05
20 65 0.86
21 7 0.09
ACGTcount: A:0.17, C:0.02, G:0.32, T:0.49
Consensus pattern (20 bp):
GGTTTAGGATTTTGGTTTGG
Found at i:14802225 original size:40 final size:41
Alignment explanation
Indices: 14802144--14802228 Score: 102
Period size: 40 Copynumber: 2.1 Consensus size: 41
14802134 GACATTAAAG
*** *
14802144 TTAGGATTTAGAGTTTTTGGTTTAGGATTTTGGTTTGGGGT
1 TTAGGATTTAGAGTTTTTGGTTTAGGATTTCAATTTAGGGT
*
14802185 TTAGGATATT-GAG-TTTTGGTTTAGGGTTTCAATTTAGGGT
1 TTAGGAT-TTAGAGTTTTTGGTTTAGGATTTCAATTTAGGGT
14802225 TTAG
1 TTAG
14802229 AGTTAAAGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
40 26 0.68
41 10 0.26
42 2 0.05
ACGTcount: A:0.18, C:0.01, G:0.32, T:0.49
Consensus pattern (41 bp):
TTAGGATTTAGAGTTTTTGGTTTAGGATTTCAATTTAGGGT
Found at i:14802425 original size:25 final size:25
Alignment explanation
Indices: 14802397--14802449 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
14802387 AGGGTTTAGA
*
14802397 GTTATGGTTTAAGGTTTGATTTAAG
1 GTTAGGGTTTAAGGTTTGATTTAAG
* *
14802422 GTTAGGGTTTAATGTTTGATTTAGG
1 GTTAGGGTTTAAGGTTTGATTTAAG
14802447 GTT
1 GTT
14802450 TCAGGTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (25 bp):
GTTAGGGTTTAAGGTTTGATTTAAG
Found at i:14804569 original size:20 final size:21
Alignment explanation
Indices: 14804524--14804571 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
14804514 AGTTTGATCT
14804524 AGTTTGA-TTGATTTTGATAA
1 AGTTTGACTTGATTTTGATAA
*
14804544 ACTTTGACTT-ATTTTGACT-A
1 AGTTTGACTTGATTTTGA-TAA
14804564 AGTTTGAC
1 AGTTTGAC
14804572 CCTTGGACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.27, C:0.08, G:0.17, T:0.48
Consensus pattern (21 bp):
AGTTTGACTTGATTTTGATAA
Found at i:14806772 original size:14 final size:14
Alignment explanation
Indices: 14806752--14806812 Score: 70
Period size: 14 Copynumber: 4.2 Consensus size: 14
14806742 ATTTTCATTT
14806752 TTTATTCTATTTTA
1 TTTATTCTATTTTA
*
14806766 TTTATTCCATTTTA
1 TTTATTCTATTTTA
14806780 TTT-TATCTATTTTTA
1 TTTAT-TCTA-TTTTA
*
14806795 TTTTATTTTATTTTA
1 -TTTATTCTATTTTA
14806810 TTT
1 TTT
14806813 CTTTCTTTAG
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
13 1 0.03
14 22 0.55
15 10 0.25
16 6 0.15
17 1 0.03
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATTCTATTTTA
Found at i:14806798 original size:5 final size:5
Alignment explanation
Indices: 14806751--14806812 Score: 65
Period size: 5 Copynumber: 12.6 Consensus size: 5
14806741 TATTTTCATT
* ** *
14806751 TTTTA TTCTA TTTTA -TTTA TTCCA TTTTA TTTTA -TCTA TTTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA
14806800 TTTTA TTTTA TTT
1 TTTTA TTTTA TTT
14806813 CTTTCTTTAG
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
4 7 0.15
5 36 0.78
6 3 0.07
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:14806799 original size:44 final size:43
Alignment explanation
Indices: 14806726--14806812 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 43
14806716 CCTTTCCTTT
*
14806726 TTCCATTATATTTTTTATTTTCATTTTTTATTCTATTTTATTTA
1 TTCCATTATATTTTTTATTTT-ATATTTTATTCTATTTTATTTA
* *
14806770 TTCCATTTTATTTTATCTATTTT-TATTTTATTTTATTTTATTT
1 TTCCATTATATTTT-T-TATTTTATATTTTATTCTATTTTATTT
14806813 CTTTCTTTAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 31 0.82
45 1 0.03
46 6 0.16
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (43 bp):
TTCCATTATATTTTTTATTTTATATTTTATTCTATTTTATTTA
Found at i:14806827 original size:44 final size:44
Alignment explanation
Indices: 14806751--14806862 Score: 109
Period size: 44 Copynumber: 2.5 Consensus size: 44
14806741 TATTTTCATT
* *
14806751 TTTTATTCTATTTTATTTATTCCATTTTATTTTATCTATTTTTA
1 TTTTATTCTATTTTATTTATTCCATTTGATTTTATCTAATTTTA
* * * * *
14806795 TTTTATTTTATTTTATTTCTTTC-TTTAGATTTTTTTTAATTTTA
1 TTTTATTCTATTTTATTTATTCCATTT-GATTTTATCTAATTTTA
*
14806839 TTATTATTACTATTATTCTTTATT
1 TT-TTATT-CTATT-TTATTTATT
14806863 ATTATTCTTG
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
43 3 0.06
44 35 0.65
45 5 0.09
46 4 0.07
47 7 0.13
ACGTcount: A:0.21, C:0.07, G:0.01, T:0.71
Consensus pattern (44 bp):
TTTTATTCTATTTTATTTATTCCATTTGATTTTATCTAATTTTA
Found at i:14814282 original size:2 final size:2
Alignment explanation
Indices: 14814269--14814306 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
14814259 TGCAATACCC
* *
14814269 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14814307 TCATCAACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:14814934 original size:25 final size:26
Alignment explanation
Indices: 14814888--14814939 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
14814878 ACGAAAAATA
14814888 ATTTTTAAAAAATATTTATATT-TAT
1 ATTTTTAAAAAATATTTATATTATAT
**
14814913 ATTTTTAAAATTTATATT-TATTATAT
1 ATTTTTAAAAAATAT-TTATATTATAT
14814939 A
1 A
14814940 AATAATGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (26 bp):
ATTTTTAAAAAATATTTATATTATAT
Found at i:14818792 original size:149 final size:149
Alignment explanation
Indices: 14818651--14818946 Score: 346
Period size: 149 Copynumber: 2.0 Consensus size: 149
14818641 AAGATTTTAG
* * * * * * ** **
14818651 CTCAATAAATTATCTTCATAAA-GGTCTACCTTGAGAAAAGAGCTCATCGTGGCAATTATTTTCA
1 CTCAACAAATTACCTTCA-AAATGGCCTAACTTAACAAAAGAGCTCATCGCAGCAATTACCTTCA
* * * * * * *
14818715 TAAAGGCTTAGCTTGGCCACTTCAA-TCAAAGAGCTCATCTTGACAAATTGCCTTCATAAAGGCT
65 TAAAAGCTTAGCTCGACCACATCAACT-AAAGAGCTCATCCTAACAAATTGCCTTCATAAAAGC-
14818779 CT-CATTGGCAAAAGATCTCCA
128 CTACATTGGCAAAAGATCTCCA
* * *
14818800 CTCAACAAATTGCCTTCAAAATGGCCTAACTTAACAAAAGAGGTCATTGCAGCAATTACCTTCAT
1 CTCAACAAATTACCTTCAAAATGGCCTAACTTAACAAAAGAGCTCATCGCAGCAATTACCTTCAT
*
14818865 AAAAGCTTAGCTCGACCACATCAACTAAAGAGCTCATCCTAACAAATTGCCTTTATAAAAGCCTA
66 AAAAGCTTAGCTCGACCACATCAACTAAAGAGCTCATCCTAACAAATTGCCTTCATAAAAGCCTA
*
14818930 CTTTGGCAAAAGATCTC
131 CATTGGCAAAAGATCTC
14818947 AGCTTGACCA
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
148 5 0.04
149 116 0.95
150 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (149 bp):
CTCAACAAATTACCTTCAAAATGGCCTAACTTAACAAAAGAGCTCATCGCAGCAATTACCTTCAT
AAAAGCTTAGCTCGACCACATCAACTAAAGAGCTCATCCTAACAAATTGCCTTCATAAAAGCCTA
CATTGGCAAAAGATCTCCA
Found at i:14818966 original size:149 final size:149
Alignment explanation
Indices: 14818702--14818979 Score: 339
Period size: 149 Copynumber: 1.9 Consensus size: 149
14818692 GCTCATCGTG
** * * * * * *
14818702 GCAATTATTTTCATAAAGGCTTAGCTTGGCCACTTCAATCAAAGAGCTCATCTTGACAAATTGCC
1 GCAATTACCTTCATAAAAGCTTAGCTCGACCACATCAATCAAAGAGCTCATCCTAACAAATTGCC
* *
14818767 TTCATAAAGGCTCTCATTGGCAAAAGATCTCCACTCAACAAATTGCCTTCA-AAATGGCCTAACT
66 TTCATAAAAGCTCTCATTGGCAAAAGATCTCCACTCAACAAATTGCCTTCATAAA-GGCCCAACT
14818831 TAACAAAAGAGGTCATTGCA
130 TAACAAAAGAGGTCATTGCA
14818851 GCAATTACCTTCATAAAAGCTTAGCTCGACCACATCAA-CTAAAGAGCTCATCCTAACAAATTGC
1 GCAATTACCTTCATAAAAGCTTAGCTCGACCACATCAATC-AAAGAGCTCATCCTAACAAATTGC
* * ** * **
14818915 CTTTATAAAAGC-CTACTTTGGCAAAAGATCT-CAGCTTGACCAATTTTCTTCATAAAGGCCCAA
65 CTTCATAAAAGCTCT-CATTGGCAAAAGATCTCCA-CTCAACAAATTGCCTTCATAAAGGCCCAA
14818978 CT
128 CT
14818980 CGACGAAAGA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
148 5 0.05
149 100 0.93
150 3 0.03
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (149 bp):
GCAATTACCTTCATAAAAGCTTAGCTCGACCACATCAATCAAAGAGCTCATCCTAACAAATTGCC
TTCATAAAAGCTCTCATTGGCAAAAGATCTCCACTCAACAAATTGCCTTCATAAAGGCCCAACTT
AACAAAAGAGGTCATTGCA
Found at i:14819269 original size:150 final size:149
Alignment explanation
Indices: 14819037--14819317 Score: 321
Period size: 150 Copynumber: 1.9 Consensus size: 149
14819027 AGTTACCTCG
* * ** * * * *
14819037 GTCAAAGAGCTCATTTTGATAAATTGCCTTTATAAAGGTTCACTTTAGCTAAAAAGCTCATCTCG
1 GTCAAAGAGCTCATTTTGATAAATTACCTTTATAAAAGCCCACCTCAGATAAAAAGCTCAACTCG
* * * * * *
14819102 ACATATTGCCTTCATAAAGGCCCAGCTTGGTAAAAAGGCTCATTTTAGCAAATTGCCTTCATAAA
66 ACAAATTGCCTTCATAAAGACCCAACTTGGCAAAAAAGCTCATTATAGC-AATTGCCTTCATAAA
14819167 GGCTTCACTTTGCCACCTTA
130 GGCTTCACTTTGCCACCTTA
* * * *
14819187 GTCAAATAGCTCATTTTGATAAATTACTTTTATAAAAGCCCACCTCA-ATAAAAGATCTCAACTT
1 GTCAAAGAGCTCATTTTGATAAATTACCTTTATAAAAGCCCACCTCAGATAAAA-AGCTCAACTC
* * * * * *
14819251 GACAAATTGTCTTTATAAAGATCTAACTTGGCAAAAAAGCTCATTATGGCAATTGTCTTCATAAA
65 GACAAATTGCCTTCATAAAGACCCAACTTGGCAAAAAAGCTCATTATAGCAATTGCCTTCATAAA
14819316 GG
130 GG
14819318 TTTAGCTCAG
Statistics
Matches: 106, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
149 21 0.20
150 85 0.80
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (149 bp):
GTCAAAGAGCTCATTTTGATAAATTACCTTTATAAAAGCCCACCTCAGATAAAAAGCTCAACTCG
ACAAATTGCCTTCATAAAGACCCAACTTGGCAAAAAAGCTCATTATAGCAATTGCCTTCATAAAG
GCTTCACTTTGCCACCTTA
Found at i:14835488 original size:39 final size:39
Alignment explanation
Indices: 14835440--14835529 Score: 117
Period size: 39 Copynumber: 2.3 Consensus size: 39
14835430 ACCTCTCAGT
* *
14835440 TTTTGAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAGCC
1 TTTTAAATTTAAAGTTTATTGCCTCTGGTCAGAGAAGCC
* * * *
14835479 TTTTAAATTTAAAGTTTATTGTCTCTGGTCATAGGAGCT
1 TTTTAAATTTAAAGTTTATTGCCTCTGGTCAGAGAAGCC
*
14835518 TTTTAATTTTAA
1 TTTTAAATTTAA
14835530 TTTTAAGAGC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.46
Consensus pattern (39 bp):
TTTTAAATTTAAAGTTTATTGCCTCTGGTCAGAGAAGCC
Found at i:14835666 original size:40 final size:40
Alignment explanation
Indices: 14835622--14836027 Score: 371
Period size: 40 Copynumber: 10.2 Consensus size: 40
14835612 TTTTTGAATC
* * *
14835622 TAAAGTTTGTTGCCTCTGGTGAGATGAGCTTTTTAACATT
1 TAAAGTTTGTTGCCTTTGGTTAGAAGAGCTTTTTAACATT
* *
14835662 TAAAGTTTGTTGCCTTTGGTTA-AAGGAG-TACTTTTGA-ATC
1 TAAAGTTTGTTGCCTTTGGTTAGAA-GAGCT--TTTTAACATT
* * * * *
14835702 TAAAGTTTGTTGCCTCTGGTGAGAGGATCTTTTCAACATT
1 TAAAGTTTGTTGCCTTTGGTTAGAAGAGCTTTTTAACATT
* * * * *
14835742 TAAAGTTTATTGCCTTTGGTTAAAAGAGC-TCTTGA-ATC
1 TAAAGTTTGTTGCCTTTGGTTAGAAGAGCTTTTTAACATT
* * * *
14835780 TAAAGTTTGTTTCCTTTGGTGAGAGGAGTTTTTTAACATT
1 TAAAGTTTGTTGCCTTTGGTTAGAAGAGCTTTTTAACATT
* * *
14835820 TAAAGTTTGTTACCTTTGGTTAAAAGAGCTTTTTATCATT
1 TAAAGTTTGTTGCCTTTGGTTAGAAGAGCTTTTTAACATT
* *
14835860 TAAAGTTTGTTGCCTTTGGTTA-AAGAAGCACTTTTGA-ATT
1 TAAAGTTTGTTGCCTTTGGTTAGAAG-AGC-TTTTTAACATT
* *
14835900 TAAAGTTTGTTGACTCTT-GTGAGAAGAGCTTTTTAACATT
1 TAAAGTTTGTTGCCT-TTGGTTAGAAGAGCTTTTTAACATT
* * * * *
14835940 TAAAGTTTATTGCCTTTGGTTAAAAGAACACTTTTATCATT
1 TAAAGTTTGTTGCCTTTGGTTAGAAGAGC-TTTTTAACATT
* * * *
14835981 TAAAGTTCGTTGCCTCTGGTTAGAGGAGCTTTTTGA-ATT
1 TAAAGTTTGTTGCCTTTGGTTAGAAGAGCTTTTTAACATT
14836020 TAAAGTTT
1 TAAAGTTT
14836028 CATAGTTTTT
Statistics
Matches: 289, Mismatches: 62, Indels: 31
0.76 0.16 0.08
Matches are distributed among these distances:
38 25 0.09
39 33 0.11
40 183 0.63
41 48 0.17
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (40 bp):
TAAAGTTTGTTGCCTTTGGTTAGAAGAGCTTTTTAACATT
Found at i:14835927 original size:158 final size:157
Alignment explanation
Indices: 14835615--14836027 Score: 388
Period size: 158 Copynumber: 2.6 Consensus size: 157
14835605 AGAAGCATTT
* *
14835615 TTGAATCTAAAGTTTGTTGCCTCTGGTGAGATGAGCTTTTTAACATTTAAAGTTTGTTGCCTTTG
1 TTGAATCTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTTTAACATTTAAAGTTTGTTACCTTTG
* * *
14835680 GTTAAAGGAGTACTTTTGAATCTAAAGTTTGTTGCCTCTGGTGAGAGGATCTTTTCAACATTTAA
66 GTTAAAAGAG-ACTTTTGAATCTAAAGTTTGTTGCCTCTGGTAAGAGCATCTTTTCAACATTTAA
* *
14835745 AGTTTATTGCCTTTGGTTAAAAGAGCTC
130 AGTTTATTGACTTTGGTGAAAAGAGCTC
* * *
14835773 TTGAATCTAAAGTTTGTTTCCTTTGGTGAGAGGAGTTTTTTAACATTTAAAGTTTGTTACCTTTG
1 TTGAATCTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTTTAACATTTAAAGTTTGTTACCTTTG
* * * *
14835838 GTTAAAAGAG-CTTTTTATCATTTAAAGTTTGTTGCCTTTGGTTAAAGAAGCA-CTTTT-GA-AT
66 GTTAAAAGAGACTTTTGA--ATCTAAAGTTTGTTGCCTCTGG-T-AAG-AGCATCTTTTCAACAT
* * *
14835899 TTAAAGTTTGTTGACTCTT-GTGAGAAGAGCTTT
126 TTAAAGTTTATTGACT-TTGGTGAAAAGAGC-TC
* * * * * * * * * * * * *
14835932 TTAACATTTAAAGTTTATTGCCTTTGGTTAAAAGAACACTTTTATCATTTAAAGTTCGTTGCCTC
1 TTGA-ATCTAAAGTTTGTTGCCTCTGGTGAGAGGAGC-TTTTTAACATTTAAAGTTTGTTACCTT
* * *
14835997 TGGTTAGAGGAG-CTTTTTGAATTTAAAGTTT
64 TGGTTAAAAGAGAC-TTTTGAATCTAAAGTTT
14836028 CATAGTTTTT
Statistics
Matches: 211, Mismatches: 34, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
156 6 0.03
158 114 0.54
159 8 0.04
160 42 0.20
161 36 0.17
162 5 0.02
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (157 bp):
TTGAATCTAAAGTTTGTTGCCTCTGGTGAGAGGAGCTTTTTAACATTTAAAGTTTGTTACCTTTG
GTTAAAAGAGACTTTTGAATCTAAAGTTTGTTGCCTCTGGTAAGAGCATCTTTTCAACATTTAAA
GTTTATTGACTTTGGTGAAAAGAGCTC
Found at i:14836230 original size:3 final size:3
Alignment explanation
Indices: 14836222--14836273 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
14836212 TTTTTATTTA
14836222 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14836270 TAT T
1 TAT T
14836274 CTTTTTAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14836800 original size:50 final size:51
Alignment explanation
Indices: 14836744--14836844 Score: 159
Period size: 50 Copynumber: 2.0 Consensus size: 51
14836734 CCAAAACTGG
* *
14836744 AAAAGTTTGAATTTTTTTATGACTGTTGAATTTTTT-GACACCAAAATCTA
1 AAAAGTTTGAATTTTTTGATGACCGTTGAATTTTTTAGACACCAAAATCTA
* *
14836794 AAAAGTTTGAATTTTTTGGTGACCGTTGAATTTTTTAGCCACCAAAATCTA
1 AAAAGTTTGAATTTTTTGATGACCGTTGAATTTTTTAGACACCAAAATCTA
14836845 GGGATCTTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
50 33 0.72
51 13 0.28
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.42
Consensus pattern (51 bp):
AAAAGTTTGAATTTTTTGATGACCGTTGAATTTTTTAGACACCAAAATCTA
Found at i:14836872 original size:50 final size:51
Alignment explanation
Indices: 14836765--14836887 Score: 117
Period size: 50 Copynumber: 2.5 Consensus size: 51
14836755 TTTTTTTATG
* * **
14836765 ACTGTTGAATTTTTT-GACACCAAAATCTAAAAAGTTTGAATTTTTTGGTG
1 ACTGTTGAATTTTTTAGCCACCAAAATCTAAAAACTTTGAATTTTTTGGAC
* ** *
14836815 ACCGTTGAATTTTTTAGCCACCAAAATCTAGGGATCTTTGAA-TTTTT-GAC
1 ACTGTTGAATTTTTTAGCCACCAAAATCTA-AAAACTTTGAATTTTTTGGAC
** *
14836865 ACTGTTGAAGATTCTAGCCACCA
1 ACTGTTGAATTTTTTAGCCACCA
14836888 GTGCACGATG
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
50 34 0.58
51 18 0.31
52 7 0.12
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (51 bp):
ACTGTTGAATTTTTTAGCCACCAAAATCTAAAAACTTTGAATTTTTTGGAC
Found at i:14837195 original size:12 final size:12
Alignment explanation
Indices: 14837180--14837222 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 12
14837170 TTTTGATTTA
14837180 TTTTATGTTGAT
1 TTTTATGTTGAT
14837192 TTTTATGTT-ATTT
1 TTTTATGTTGA--T
14837205 TTTTATGTTG-T
1 TTTTATGTTGAT
14837216 TTTTATG
1 TTTTATG
14837223 ATATTATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
11 9 0.32
12 9 0.32
13 10 0.36
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (12 bp):
TTTTATGTTGAT
Found at i:14847485 original size:22 final size:22
Alignment explanation
Indices: 14847460--14847506 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
14847450 TTGAGCAATA
**
14847460 TCTAACAAATTTTAAACAAATC
1 TCTAACAAATCCTAAACAAATC
*
14847482 TCTAACATATCCTAAACAAATC
1 TCTAACAAATCCTAAACAAATC
14847504 TCT
1 TCT
14847507 TATGGGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (22 bp):
TCTAACAAATCCTAAACAAATC
Found at i:14849743 original size:36 final size:36
Alignment explanation
Indices: 14849696--14849767 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
14849686 TCTGATTGCC
* * *
14849696 TTTACTTGTTTATGCTTGTTTTGTTTATGTGCTTTG
1 TTTACTTGTTTATGCTAGTGTTGTTTATGTACTTTG
14849732 TTTACTTGTTTATGCTAGTGTTGTTTATGTACTTTG
1 TTTACTTGTTTATGCTAGTGTTGTTTATGTACTTTG
14849768 CATGGTTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.11, C:0.08, G:0.19, T:0.61
Consensus pattern (36 bp):
TTTACTTGTTTATGCTAGTGTTGTTTATGTACTTTG
Found at i:14854145 original size:20 final size:20
Alignment explanation
Indices: 14854120--14854165 Score: 83
Period size: 20 Copynumber: 2.2 Consensus size: 20
14854110 TCAACTATGA
14854120 AAATAGGCGCAACTCACATC
1 AAATAGGCGCAACTCACATC
14854140 AAATAGGCGCAACTCACATC
1 AAATAGGCGCAACTCACATC
14854160 ACAATA
1 A-AATA
14854166 TAACATGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.43, C:0.28, G:0.13, T:0.15
Consensus pattern (20 bp):
AAATAGGCGCAACTCACATC
Found at i:14855121 original size:63 final size:63
Alignment explanation
Indices: 14855022--14855148 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
14855012 AGAGAAAAAA
14855022 AGGATAAGGGAGAGTTGATGGTTGAATGAAAGTTAATCCGTGATCTAATTAAGTTAAAATTTT
1 AGGATAAGGGAGAGTTGATGGTTGAATGAAAGTTAATCCGTGATCTAATTAAGTTAAAATTTT
14855085 AGGATAAGGGAGAGTTGATGGTTGAATGAAAGTTAATCCGTGATCTAATTAAGTTAAAATTTT
1 AGGATAAGGGAGAGTTGATGGTTGAATGAAAGTTAATCCGTGATCTAATTAAGTTAAAATTTT
14855148 A
1 A
14855149 TCAGTAGGTT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.33
Consensus pattern (63 bp):
AGGATAAGGGAGAGTTGATGGTTGAATGAAAGTTAATCCGTGATCTAATTAAGTTAAAATTTT
Found at i:14858698 original size:16 final size:18
Alignment explanation
Indices: 14858651--14858698 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 18
14858641 AAATCATCAT
14858651 TTATATATATATATATATCTA
1 TTATAT-TA-ATA-ATATCTA
14858672 TTATATTAATAATAT-TA
1 TTATATTAATAATATCTA
14858689 TTAT-TTAATA
1 TTATATTAATA
14858699 CTTTATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.22
17 6 0.22
18 4 0.15
19 3 0.11
20 2 0.07
21 6 0.22
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATATTAATAATATCTA
Found at i:14862445 original size:2 final size:2
Alignment explanation
Indices: 14862438--14862513 Score: 100
Period size: 2 Copynumber: 38.5 Consensus size: 2
14862428 TGAATGCTTA
* * * * *
14862438 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AC AC AT AC AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14862480 AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14862514 GAAAGTAAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
1 1 0.01
2 66 0.99
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:14865074 original size:2 final size:2
Alignment explanation
Indices: 14865067--14865094 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14865057 GTTATGATAA
14865067 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14865095 CTAAATGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14868887 original size:20 final size:21
Alignment explanation
Indices: 14868858--14868897 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
14868848 GGTAAGACAA
* *
14868858 AATTTGGATTTATT-TTTTAT
1 AATTTAGATTAATTGTTTTAT
14868878 AATTTAGATTAATTGTTTTA
1 AATTTAGATTAATTGTTTTA
14868898 ATTAAAGTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (21 bp):
AATTTAGATTAATTGTTTTAT
Found at i:14870051 original size:19 final size:19
Alignment explanation
Indices: 14870029--14870073 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
14870019 GTTCGACTCA
14870029 CAACTCGTGATTCGATACT
1 CAACTCGTGATTCGATACT
*
14870048 CAACTCGTGATTCTATACT
1 CAACTCGTGATTCGATACT
*
14870067 TAACTCG
1 CAACTCG
14870074 AACTCGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (19 bp):
CAACTCGTGATTCGATACT
Found at i:14871312 original size:33 final size:34
Alignment explanation
Indices: 14871236--14871325 Score: 139
Period size: 34 Copynumber: 2.7 Consensus size: 34
14871226 GTAATTAAAA
* *
14871236 TTTATAAATAATTTTGTAAAATATTATTATGTTT
1 TTTATAAATAATTTTGTAAAATATTATCATGTAT
14871270 TTTATAAATAATTTTGTAAAATATTATCAT-TAT
1 TTTATAAATAATTTTGTAAAATATTATCATGTAT
*
14871303 TTTAAAAATAATTTT-TAAAATAT
1 TTTATAAATAATTTTGTAAAATAT
14871326 AATAAAATGA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
32 8 0.15
33 16 0.30
34 29 0.55
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (34 bp):
TTTATAAATAATTTTGTAAAATATTATCATGTAT
Found at i:14871452 original size:21 final size:21
Alignment explanation
Indices: 14871422--14871462 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14871412 AAATAGTAAC
14871422 TATTACCAATAGAATTTTAAT
1 TATTACCAATAGAATTTTAAT
* * *
14871443 TATTATCAATGGATTTTTAA
1 TATTACCAATAGAATTTTAA
14871463 AAAAATTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (21 bp):
TATTACCAATAGAATTTTAAT
Found at i:14875029 original size:17 final size:17
Alignment explanation
Indices: 14875009--14875042 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14874999 TTACTTTAAG
14875009 TTTTCTCTCATTTTTAT
1 TTTTCTCTCATTTTTAT
* *
14875026 TTTTTTCTCTTTTTTAT
1 TTTTCTCTCATTTTTAT
14875043 GGCCTCCTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTCTCTCATTTTTAT
Found at i:14876740 original size:22 final size:22
Alignment explanation
Indices: 14876715--14876757 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14876705 TTTACCTTGG
*
14876715 TTCTTATTATTCTTCTTTTTTT
1 TTCTTATTATTCTTCTCTTTTT
* *
14876737 TTCTTCTTTTTCTTCTCTTTT
1 TTCTTATTATTCTTCTCTTTT
14876758 GGTGTGTGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (22 bp):
TTCTTATTATTCTTCTCTTTTT
Found at i:14881291 original size:21 final size:20
Alignment explanation
Indices: 14881267--14881307 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14881257 AGCAAGGTCT
14881267 CTTTATAAAAAAAATCTAAAA
1 CTTTA-AAAAAAAATCTAAAA
* *
14881288 CTTTACAAATAAATCTAAAA
1 CTTTAAAAAAAAATCTAAAA
14881308 TCTAATGCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (20 bp):
CTTTAAAAAAAAATCTAAAA
Found at i:14885699 original size:2 final size:2
Alignment explanation
Indices: 14885692--14885725 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14885682 AAACGAAACA
14885692 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14885726 TAGTTTTTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14914819 original size:19 final size:20
Alignment explanation
Indices: 14914792--14914831 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14914782 TTTTTCATTA
* *
14914792 TTTATTTTTTTAGAAT-TTT
1 TTTAATTTTTAAGAATGTTT
14914811 TTTAATTTTTAAGAATGTTT
1 TTTAATTTTTAAGAATGTTT
14914831 T
1 T
14914832 AGGTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (20 bp):
TTTAATTTTTAAGAATGTTT
Found at i:14914910 original size:19 final size:18
Alignment explanation
Indices: 14914852--14914910 Score: 55
Period size: 19 Copynumber: 3.2 Consensus size: 18
14914842 GAAATTATTT
*
14914852 AATCTTTCAAAATTTTTAA
1 AATCTTTC-AATTTTTTAA
* * *
14914871 AATGTTTGAATTTTTAAA
1 AATCTTTCAATTTTTTAA
*
14914889 AATCTTTCAGATTTTTTCA
1 AATCTTTCA-ATTTTTTAA
14914908 AAT
1 AAT
14914911 TTTTTTTTAT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.49
Consensus pattern (18 bp):
AATCTTTCAATTTTTTAA
Found at i:14915039 original size:18 final size:18
Alignment explanation
Indices: 14915016--14915068 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 18
14915006 AGAAAAAATA
14915016 ATTTTTATTAAAATTTTC
1 ATTTTTATTAAAATTTTC
* *
14915034 ATTTTTA--AAATTTTTTT
1 ATTTTTATTAAA-ATTTTC
14915051 ATTTTTATT-AAATTTTC
1 ATTTTTATTAAAATTTTC
14915068 A
1 A
14915069 ATATTTTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
16 3 0.11
17 16 0.57
18 9 0.32
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTTTTATTAAAATTTTC
Found at i:14915089 original size:25 final size:25
Alignment explanation
Indices: 14915045--14915116 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
14915035 TTTTTAAAAT
*
14915045 TTTTTTATTTTTATTAAATTTTCAATA
1 TTTTATATTTTTA-T-AATTTTCAATA
* * *
14915072 TTTTATATTTTTATAATTATCATTT
1 TTTTATATTTTTATAATTTTCAATA
14915097 TTTTATAATTTTT-TAATTTT
1 TTTTAT-ATTTTTATAATTTT
14915117 TTATAATTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
25 20 0.51
26 7 0.18
27 12 0.31
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTTATATTTTTATAATTTTCAATA
Found at i:14915107 original size:11 final size:11
Alignment explanation
Indices: 14915088--14915138 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
14915078 ATTTTTATAA
*
14915088 TTATCATTTTT
1 TTATAATTTTT
14915099 TTATAA--TTT
1 TTATAATTTTT
14915108 TT-TAA-TTTT
1 TTATAATTTTT
14915117 TTATAATTTTT
1 TTATAATTTTT
14915128 TTA-AATTTTT
1 TTATAATTTTT
14915138 T
1 T
14915139 AGAAAATTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
8 3 0.08
9 10 0.28
10 11 0.31
11 12 0.33
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATAATTTTT
Found at i:14915116 original size:18 final size:20
Alignment explanation
Indices: 14915095--14915139 Score: 76
Period size: 18 Copynumber: 2.4 Consensus size: 20
14915085 TAATTATCAT
14915095 TTTTTTATAA-TTTTTT-AA
1 TTTTTTATAATTTTTTTAAA
14915113 TTTTTTATAATTTTTTTAAA
1 TTTTTTATAATTTTTTTAAA
14915133 TTTTTTA
1 TTTTTTA
14915140 GAAAATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 10 0.40
19 6 0.24
20 9 0.36
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTTTATAATTTTTTTAAA
Found at i:14915136 original size:8 final size:10
Alignment explanation
Indices: 14915095--14915139 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
14915085 TAATTATCAT
14915095 TTTTTTATAA
1 TTTTTTATAA
14915105 -TTTTT-TAA
1 TTTTTTATAA
14915113 TTTTTTATAA
1 TTTTTTATAA
14915123 TTTTTT-TAAA
1 TTTTTTAT-AA
14915133 TTTTTTA
1 TTTTTTA
14915140 GAAAATTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 3 0.10
9 11 0.35
10 17 0.55
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:14915176 original size:21 final size:21
Alignment explanation
Indices: 14915150--14915203 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
14915140 GAAAATTTAA
14915150 AAATTTTCTAGAATTTCTT-AG
1 AAATTTT-TAGAATTTCTTCAG
* *
14915171 AAATTTTTAAAATTTTTTCAG
1 AAATTTTTAGAATTTCTTCAG
14915192 -AATTTTATAGAA
1 AAATTTT-TAGAA
14915204 AAAATTTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (21 bp):
AAATTTTTAGAATTTCTTCAG
Found at i:14915309 original size:21 final size:20
Alignment explanation
Indices: 14915262--14915311 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
14915252 TGAATTCTTT
*
14915262 AATTTTTAAAAAAATTTTATA
1 AATTTTT-AAAAAATTTTAAA
* *
14915283 ACTTTTTAAAACATTTTAGAA
1 AATTTTTAAAAAATTTTA-AA
14915304 AATTTTTA
1 AATTTTTA
14915312 GAATTTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (20 bp):
AATTTTTAAAAAATTTTAAA
Found at i:14915679 original size:22 final size:22
Alignment explanation
Indices: 14915605--14915702 Score: 81
Period size: 22 Copynumber: 4.5 Consensus size: 22
14915595 AATTATACTA
** * *
14915605 ATTTACTTTTAATTTTTCAATA
1 ATTTACTACTAATTTATCAATG
* * * *
14915627 ATTAACTATTAAATTATTAAT-
1 ATTTACTACTAATTTATCAATG
* *
14915648 TTTTATTACTAATTTATCAATG
1 ATTTACTACTAATTTATCAATG
* *
14915670 ATTTACTACTAACTTATTAATG
1 ATTTACTACTAATTTATCAATG
14915692 ATTTACTACTA
1 ATTTACTACTA
14915703 TCAATTAATT
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
21 15 0.25
22 45 0.75
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.51
Consensus pattern (22 bp):
ATTTACTACTAATTTATCAATG
Found at i:14915713 original size:25 final size:22
Alignment explanation
Indices: 14915631--14915702 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
14915621 TCAATAATTA
* *
14915631 ACTATTAAATTATTAAT-TTTT
1 ACTACTAAATTATTAATGATTT
* * *
14915652 ATTACTAATTTATCAATGATTT
1 ACTACTAAATTATTAATGATTT
*
14915674 ACTACTAACTTATTAATGATTT
1 ACTACTAAATTATTAATGATTT
14915696 ACTACTA
1 ACTACTA
14915703 TCAATTAATT
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
21 13 0.31
22 29 0.69
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.49
Consensus pattern (22 bp):
ACTACTAAATTATTAATGATTT
Found at i:14915953 original size:22 final size:22
Alignment explanation
Indices: 14915923--14915966 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14915913 TTAAAAAATG
14915923 ATCAATTATTGACTATTAAGTT
1 ATCAATTATTGACTATTAAGTT
* *
14915945 ATCATTTATTTACTATTAAGTT
1 ATCAATTATTGACTATTAAGTT
14915967 GTCTCTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (22 bp):
ATCAATTATTGACTATTAAGTT
Found at i:14915977 original size:22 final size:22
Alignment explanation
Indices: 14915934--14915990 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
14915924 TCAATTATTG
*
14915934 ACTATTAAGTTATCATTTATTT
1 ACTATTAAGTTATCATTAATTT
*
14915956 ACTATTAAGTTGTC-TCTAATTT
1 ACTATTAAGTTATCAT-TAATTT
* *
14915978 ACTACTAATTTAT
1 ACTATTAAGTTAT
14915991 ACTAATTACA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 1 0.03
22 28 0.97
ACGTcount: A:0.32, C:0.12, G:0.05, T:0.51
Consensus pattern (22 bp):
ACTATTAAGTTATCATTAATTT
Found at i:14916037 original size:22 final size:22
Alignment explanation
Indices: 14916003--14916048 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
14915993 TAATTACATT
14916003 TAAGTTTTCAATTAT-TAATTAC
1 TAAGTTTTCAATTATCT-ATTAC
14916025 TAAGTTATT-AATTATCTATTAC
1 TAAGTT-TTCAATTATCTATTAC
14916047 TA
1 TA
14916049 TATTACCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.50
Consensus pattern (22 bp):
TAAGTTTTCAATTATCTATTAC
Found at i:14923407 original size:50 final size:51
Alignment explanation
Indices: 14923327--14923428 Score: 179
Period size: 50 Copynumber: 2.0 Consensus size: 51
14923317 TTCCACAATA
14923327 TAAGGTAAAAGTTTATTCAAACTAGCTTCTATGTAATGAGATGGTAATGGT
1 TAAGGTAAAAGTTTATTCAAACTAGCTTCTATGTAATGAGATGGTAATGGT
* *
14923378 TAAGGT-AAAGTTTATTCAAACTAGTTTCTATTTAATGAGATGGTAATGGT
1 TAAGGTAAAAGTTTATTCAAACTAGCTTCTATGTAATGAGATGGTAATGGT
14923428 T
1 T
14923429 CCTCGGCCTT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 43 0.88
51 6 0.12
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (51 bp):
TAAGGTAAAAGTTTATTCAAACTAGCTTCTATGTAATGAGATGGTAATGGT
Found at i:14925153 original size:28 final size:29
Alignment explanation
Indices: 14925119--14925176 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 29
14925109 ATTTTTAAAA
14925119 TTAAATTAATTT-AATTCTAATT-AA-TATT
1 TTAAATT-ATTTGAA-TCTAATTGAATTATT
14925147 TTAAATTATTTGAATCTAATTGAATTATT
1 TTAAATTATTTGAATCTAATTGAATTATT
14925176 T
1 T
14925177 GGAATTCAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
27 11 0.41
28 11 0.41
29 5 0.19
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.53
Consensus pattern (29 bp):
TTAAATTATTTGAATCTAATTGAATTATT
Found at i:14926000 original size:40 final size:40
Alignment explanation
Indices: 14925937--14926041 Score: 106
Period size: 40 Copynumber: 2.6 Consensus size: 40
14925927 GTAGGAAAAA
* * ** *
14925937 AAACTCTTTAATT-ATATCTATTAAAGTGT-TAGTATGAAG
1 AAACGCTTTAATTGATATCAATTAAAGCATCTA-TAAGAAG
* * *
14925976 AAATGCTTTAATTGATATCAATTAAGGCATCTATAAGATG
1 AAACGCTTTAATTGATATCAATTAAAGCATCTATAAGAAG
*
14926016 AAACGCCTTAATTGATATCAATTAAA
1 AAACGCTTTAATTGATATCAATTAAA
14926042 ATTGAATTAA
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
39 11 0.21
40 40 0.75
41 2 0.04
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.36
Consensus pattern (40 bp):
AAACGCTTTAATTGATATCAATTAAAGCATCTATAAGAAG
Found at i:14929252 original size:23 final size:23
Alignment explanation
Indices: 14929197--14929253 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
14929187 TAATAATTTA
14929197 AAATGTAAAATAGAAACATGATAT
1 AAAT-TAAAATAGAAACATGATAT
*
14929221 AAATAAAAATAAGAAA-ATGATAT
1 AAATTAAAAT-AGAAACATGATAT
*
14929244 AATTTAAAAT
1 AAATTAAAAT
14929254 TTTATTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 20 0.69
24 9 0.31
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (23 bp):
AAATTAAAATAGAAACATGATAT
Found at i:14932244 original size:14 final size:14
Alignment explanation
Indices: 14932222--14932252 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14932212 TGACATAAAT
14932222 AAATAATACAAAAC
1 AAATAATACAAAAC
*
14932236 AAATCATACAAAAC
1 AAATAATACAAAAC
14932250 AAA
1 AAA
14932253 AAGTAGACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.71, C:0.16, G:0.00, T:0.13
Consensus pattern (14 bp):
AAATAATACAAAAC
Found at i:14933968 original size:19 final size:20
Alignment explanation
Indices: 14933934--14933972 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
14933924 ATGCTTGGTT
14933934 TAGATATGTAAATCATGATTA
1 TAGATATG-AAATCATGATTA
14933955 TAGATATG-AATCATGATT
1 TAGATATGAAATCATGATT
14933973 TAAGTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.38
Consensus pattern (20 bp):
TAGATATGAAATCATGATTA
Found at i:14936295 original size:115 final size:116
Alignment explanation
Indices: 14936168--14936384 Score: 278
Period size: 116 Copynumber: 1.9 Consensus size: 116
14936158 CCATTCATTG
* *
14936168 GGTGATCGATCCCTTATATAAGGGG-TCGATCTTTTTTCT-AGATTTTTGAA-CAAAGAGAACAT
1 GGTGATCGATCCCTTATATAAGGGGATCGATCCTTTTTCTGA-AATTTT-AAGCAAAGAGAACAT
* *
14936230 TCTGTATGAACAACTGATCGATCCCTTTAAGGGAGGGATCAATCTCATGCCTA
64 TCTGTATGAAAAACTGATCGATCCCTTTAAGGAAGGGATCAATCTCATGCCTA
* ** * * *
14936283 GGTGATCGATCCCTTATGTGGGGGGATCGATCCTTTTTCTGAAATTTTAAGCGATGAGAGCATTC
1 GGTGATCGATCCCTTATATAAGGGGATCGATCCTTTTTCTGAAATTTTAAGCAAAGAGAACATTC
* * *
14936348 TGTGTGAAAAAGTTATCGATCCCTTTAAGGAAGGGAT
66 TGTATGAAAAACTGATCGATCCCTTTAAGGAAGGGAT
14936385 AGATCAAGTA
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
115 24 0.28
116 61 0.71
117 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (116 bp):
GGTGATCGATCCCTTATATAAGGGGATCGATCCTTTTTCTGAAATTTTAAGCAAAGAGAACATTC
TGTATGAAAAACTGATCGATCCCTTTAAGGAAGGGATCAATCTCATGCCTA
Found at i:14947840 original size:88 final size:90
Alignment explanation
Indices: 14947739--14947917 Score: 290
Period size: 89 Copynumber: 2.0 Consensus size: 90
14947729 GTAATATTTC
* *
14947739 TAAAATAATTCAAAATCCTAAAATTTAAAAAATCTATTATG-TTTTTTCTTTTAAAAATATTGTT
1 TAAAATAAATCAAAATCCTAAAATTTAAAAAATCTATTATGTTTTTTTCTTTTAAAAATATTATT
*
14947803 TTTATTATAATTAATCTACTATGTG
66 TTTATTATAATTAATATACTATGTG
*
14947828 TAAAA-AAATCAAAATCCTAAATTTTAAAAAATCTATTATGTTTTTTTCTTTTAAAAATATTATT
1 TAAAATAAATCAAAATCCTAAAATTTAAAAAATCTATTATGTTTTTTTCTTTTAAAAATATTATT
* *
14947892 TTTATTGTAATTAATATATTATGTG
66 TTTATTATAATTAATATACTATGTG
14947917 T
1 T
14947918 CCAATCATTA
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
88 33 0.40
89 50 0.60
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (90 bp):
TAAAATAAATCAAAATCCTAAAATTTAAAAAATCTATTATGTTTTTTTCTTTTAAAAATATTATT
TTTATTATAATTAATATACTATGTG
Found at i:14949836 original size:19 final size:20
Alignment explanation
Indices: 14949814--14949865 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
14949804 AATATTTTAA
14949814 TTTTAAAAAAATAATTTC-T
1 TTTTAAAAAAATAATTTCAT
*
14949833 TTTTAAAAAACA-GATTTCAT
1 TTTTAAAAAA-ATAATTTCAT
14949853 TTTGTAAAAAAAT
1 TTT-TAAAAAAAT
14949866 TCAATTCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 15 0.54
20 6 0.21
21 7 0.25
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (20 bp):
TTTTAAAAAAATAATTTCAT
Found at i:14950225 original size:19 final size:20
Alignment explanation
Indices: 14950180--14950225 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
14950170 AATTAAATTT
*
14950180 AATATTTTTAAAAGATAAAA
1 AATATTTATAAAAGATAAAA
* *
14950200 AAT-TTTATAAAA-ATGAGA
1 AATATTTATAAAAGATAAAA
14950218 AATATTTA
1 AATATTTA
14950226 AATTTTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 7 0.32
19 12 0.55
20 3 0.14
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (20 bp):
AATATTTATAAAAGATAAAA
Found at i:14950345 original size:25 final size:26
Alignment explanation
Indices: 14950317--14950366 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14950307 TAAAAATTCT
14950317 AAAAATTGAAAT-T-ATTTTTCAAAAG
1 AAAAA-TGAAATCTGATTTTTCAAAAG
14950342 AAAAATGAAATCTGATTTTTCAAAA
1 AAAAATGAAATCTGATTTTTCAAAA
14950367 ACAATTCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.26
25 6 0.26
26 11 0.48
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (26 bp):
AAAAATGAAATCTGATTTTTCAAAAG
Found at i:14951703 original size:19 final size:19
Alignment explanation
Indices: 14951681--14951728 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
14951671 AAATATAACA
* *
14951681 AATAAATATAATTAACATG
1 AATAAATATAATGAACACG
*
14951700 AATATATATAA-GAACACG
1 AATAAATATAATGAACACG
14951718 AATAAA-ATAAT
1 AATAAATATAAT
14951729 AAATAATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 4 0.17
18 10 0.42
19 10 0.42
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.27
Consensus pattern (19 bp):
AATAAATATAATGAACACG
Found at i:14952307 original size:21 final size:21
Alignment explanation
Indices: 14952283--14952324 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
14952273 TAATACAAAT
14952283 AAACACA-AAATATTTTTTTTA
1 AAACACATAAA-ATTTTTTTTA
*
14952304 AAACACATACAATTTTTTTTA
1 AAACACATAAAATTTTTTTTA
14952325 TATTATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.43
Consensus pattern (21 bp):
AAACACATAAAATTTTTTTTA
Found at i:14955430 original size:21 final size:21
Alignment explanation
Indices: 14955406--14955449 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
14955396 CCTAAACTAT
*
14955406 CATGAAACCATAGTAAAATAA
1 CATGAAACCAAAGTAAAATAA
* *
14955427 CATGAAACTAAATTAAAATAA
1 CATGAAACCAAAGTAAAATAA
14955448 CA
1 CA
14955450 AGCAAATAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.20
Consensus pattern (21 bp):
CATGAAACCAAAGTAAAATAA
Found at i:14958530 original size:134 final size:134
Alignment explanation
Indices: 14958315--14958563 Score: 329
Period size: 134 Copynumber: 1.9 Consensus size: 134
14958305 CAAAAAAAGA
* * * *
14958315 CATTCGCATTTGCATCACTCGCATTCACACTTGCATGTGCATCGTGAAAAAGACATTTGCATTTA
1 CATTCACATTTGCATCACTCGCATTCACACTTGCATGAGCATCATGAAAAAGACATTTGCATTCA
* ** * ** * *
14958380 GCTCTATGTCACAAAAAAGACATTTGCATTTGCGTCGCTTGCATTTGCATAAAAAAAAAAGAACA
66 GCTATACATCACAAAAAAAACATTTAAATTTGCATCACTTGCATTTGCATAAAAAAAAAAGAACA
14958445 AGGG
131 AGGG
* * * *
14958449 CATTCACATTTGCATCATTTGCATTCGCACTTGCATGAGCATCATGAGAAAGACATTTGCATTCA
1 CATTCACATTTGCATCACTCGCATTCACACTTGCATGAGCATCATGAAAAAGACATTTGCATTCA
*
14958514 -CATATACATCATAAAAAAAACATTTAAATTTGCATCACTTGCATTTGCAT
66 GC-TATACATCACAAAAAAAACATTTAAATTTGCATCACTTGCATTTGCAT
14958564 CATAAGAAAG
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
133 1 0.01
134 96 0.99
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (134 bp):
CATTCACATTTGCATCACTCGCATTCACACTTGCATGAGCATCATGAAAAAGACATTTGCATTCA
GCTATACATCACAAAAAAAACATTTAAATTTGCATCACTTGCATTTGCATAAAAAAAAAAGAACA
AGGG
Found at i:14958568 original size:41 final size:41
Alignment explanation
Indices: 14958520--14958604 Score: 134
Period size: 41 Copynumber: 2.1 Consensus size: 41
14958510 TTCACATATA
14958520 CATCATAAAAAAAACATTTAAATTTGCATCACTTGCATTTG
1 CATCATAAAAAAAACATTTAAATTTGCATCACTTGCATTTG
* * **
14958561 CATCATAAGAAAGACATTTGCATTTGCATCACTTGCATTTG
1 CATCATAAAAAAAACATTTAAATTTGCATCACTTGCATTTG
14958602 CAT
1 CAT
14958605 TTGCACCATA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (41 bp):
CATCATAAAAAAAACATTTAAATTTGCATCACTTGCATTTG
Found at i:14958588 original size:26 final size:26
Alignment explanation
Indices: 14958552--14958639 Score: 89
Period size: 26 Copynumber: 3.6 Consensus size: 26
14958542 TTTGCATCAC
14958552 TTGCATTTGCATCATAAGAAAGACAT
1 TTGCATTTGCATCATAAGAAAGACAT
*
14958578 TTGCATTTGCATCACT-----TG-CAT
1 TTGCATTTGCATCA-TAAGAAAGACAT
* *
14958599 TTGCATTTGCACCATAAGAAAGAAAT
1 TTGCATTTGCATCATAAGAAAGACAT
*
14958625 TTGCATTTGTATCAT
1 TTGCATTTGCATCAT
14958640 GACATCTACA
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
20 1 0.02
21 16 0.33
22 1 0.02
25 1 0.02
26 29 0.59
27 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (26 bp):
TTGCATTTGCATCATAAGAAAGACAT
Found at i:14959229 original size:87 final size:87
Alignment explanation
Indices: 14959094--14959331 Score: 329
Period size: 87 Copynumber: 2.7 Consensus size: 87
14959084 GGCCTCCAGG
* *
14959094 CAAAGCATTTTAAAATTTTAAAGTTTCAACG-TCTATATTA-GAAGGAGCATTCAAAGACCTCC-
1 CAAAGCATTTTAAATTTTTAAAGTTTCAACGCT-TCTATTACG-AGGAGCATTCAAAGACCTCCA
14959156 GAGCATAATTTCCAAGAACTCCGAA
64 GA-CATAATTTCCAAGAACTCCGAA
* *
14959181 CAAAACATTTTAAATTTTTAAAGTTTCAACGCTTCTATTACGATGAGCATTCAAAGACCTCCAGA
1 CAAAGCATTTTAAATTTTTAAAGTTTCAACGCTTCTATTACGAGGAGCATTCAAAGACCTCCAGA
* * *
14959246 CATAATTTCTAAGACCTCCGAG
66 CATAATTTCCAAGAACTCCGAA
* * * *
14959268 CAAAGCATTTTAAATATTTAAAGTTTCAACACCTCTATTACAAGGAGCATTCAAAGACCTCCAG
1 CAAAGCATTTTAAATTTTTAAAGTTTCAACGCTTCTATTACGAGGAGCATTCAAAGACCTCCAG
14959332 GCAAAACATT
Statistics
Matches: 135, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
87 131 0.97
88 4 0.03
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (87 bp):
CAAAGCATTTTAAATTTTTAAAGTTTCAACGCTTCTATTACGAGGAGCATTCAAAGACCTCCAGA
CATAATTTCCAAGAACTCCGAA
Found at i:14959336 original size:65 final size:66
Alignment explanation
Indices: 14959256--14959395 Score: 203
Period size: 65 Copynumber: 2.2 Consensus size: 66
14959246 CATAATTTCT
* *
14959256 AAGACCTCC-GAGCAAAGCATTTTAAATATTTAAAGTTTCAACACCTCTATTACAAGGAGCATTC
1 AAGACCTCCAGAGCAAAACATTTTAAATATTTAAAGTTTCAACACCTCTATTACAAGGAACATTC
14959320 A
66 A
* * ** *
14959321 AAGACCTCCAG-GCAAAACATTTTAAATTTTTAGAGTTTCAATGCCTCTATTACGAGGAACATTC
1 AAGACCTCCAGAGCAAAACATTTTAAATATTTAAAGTTTCAACACCTCTATTACAAGGAACATTC
14959385 A
66 A
14959386 AAGACCTCCA
1 AAGACCTCCA
14959396 CACATAATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
65 66 0.99
66 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (66 bp):
AAGACCTCCAGAGCAAAACATTTTAAATATTTAAAGTTTCAACACCTCTATTACAAGGAACATTC
A
Found at i:14959373 original size:152 final size:152
Alignment explanation
Indices: 14959181--14959483 Score: 462
Period size: 152 Copynumber: 2.0 Consensus size: 152
14959171 GAACTCCGAA
* * * *
14959181 CAAAACATTTTAAATTTTTAAAGTTTCAACGCTTCTATTACGATGAGCATTCAAAGACCTCCAGA
1 CAAAACATTTTAAATTTTTAAAGTTTCAACGCCTCTATTACGAGGAACATTCAAAGACCTCCACA
*
14959246 CATAATTTCTAAGACCTCCGAGCAAAGCATTTTAAATATTTAAAGTTTCAACACCTCTATTACAA
66 CATAATTTCCAAGACCTCCGAGCAAAGCATTTTAAATATTTAAAGTTTCAACACCTCTATTACAA
*
14959311 GGAGCATTCAAAGACCTCCAGG
131 GGAGCAATCAAAGACCTCCAGG
* *
14959333 CAAAACATTTTAAATTTTTAGAGTTTCAATGCCTCTATTACGAGGAACATTCAAAGACCTCCACA
1 CAAAACATTTTAAATTTTTAAAGTTTCAACGCCTCTATTACGAGGAACATTCAAAGACCTCCACA
** * * * ***
14959398 CATAATTTCCAAGACCTTTGGGCAAAGCATTTTAAATTTTTAAAGTTTCAACCCCTCTATTATGG
66 CATAATTTCCAAGACCTCCGAGCAAAGCATTTTAAATATTTAAAGTTTCAACACCTCTATTACAA
14959463 GGAGCAATCAAAGACCTCCAG
131 GGAGCAATCAAAGACCTCCAG
14959484 ACATAATTTC
Statistics
Matches: 135, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
152 135 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.30
Consensus pattern (152 bp):
CAAAACATTTTAAATTTTTAAAGTTTCAACGCCTCTATTACGAGGAACATTCAAAGACCTCCACA
CATAATTTCCAAGACCTCCGAGCAAAGCATTTTAAATATTTAAAGTTTCAACACCTCTATTACAA
GGAGCAATCAAAGACCTCCAGG
Found at i:14959412 original size:87 final size:87
Alignment explanation
Indices: 14959321--14959562 Score: 342
Period size: 87 Copynumber: 2.8 Consensus size: 87
14959311 GGAGCATTCA
* * * *
14959321 AAGACCTCCAGGCAAAACATTTTAAATTTTTAGAGTTTCAATGCCTCTATTACGAGGAACATTCA
1 AAGACCTCTAGGCAAAACATTTTAAATTTTTAAAGTTTCAACGCCTCTATTACGAGGAGCATTCA
14959386 AAGACCTCCACACATAATTTCC
66 AAGACCTCCACACATAATTTCC
* * * * * * *
14959408 AAGACCTTTGGGCAAAGCATTTTAAATTTTTAAAGTTTCAACCCCTCTATTATGGGGAGCAATCA
1 AAGACCTCTAGGCAAAACATTTTAAATTTTTAAAGTTTCAACGCCTCTATTACGAGGAGCATTCA
*
14959473 AAGACCTCCAGACATAATTTCC
66 AAGACCTCCACACATAATTTCC
* * *
14959495 AA-AGCTCTAGGCAAAACATTTTAAATTTTTAAAGTTTCAACGCCTTTATTACTAGGAGCATTCA
1 AAGACCTCTAGGCAAAACATTTTAAATTTTTAAAGTTTCAACGCCTCTATTACGAGGAGCATTCA
14959559 AAGA
66 AAGA
14959563 TTTTTAAGAT
Statistics
Matches: 133, Mismatches: 22, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
86 56 0.42
87 77 0.58
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (87 bp):
AAGACCTCTAGGCAAAACATTTTAAATTTTTAAAGTTTCAACGCCTCTATTACGAGGAGCATTCA
AAGACCTCCACACATAATTTCC
Found at i:14959700 original size:127 final size:126
Alignment explanation
Indices: 14959470--14959701 Score: 342
Period size: 127 Copynumber: 1.8 Consensus size: 126
14959460 TGGGGAGCAA
* * * *
14959470 TCAAAGACCTCCAGACATAATTTCCAAAGCTCTAGGCAAAACATTTTAAATTTTTAAAGTTTCAA
1 TCAAAGACCTCCAAACATAATTTCCAAACCTCGAGGCAAAACATTTTAAATTTTCAAAGTTTCAA
*
14959535 CGCCTTTATTACTAGGAGCATTCAAAGATTTTTAAGATTTATGAGGCCTCCGAGCATAATC
66 CGCCTCTATTACTAGGAGCATTCAAAGATTTTTAAGATTTATGAGGCCTCCGAGCATAATC
* *
14959596 TCAAAGACCTCCAAATATAATTTCCAATACCTCCGA-GCAAAATATTTTAAATTTTCAAAGTTTC
1 TCAAAGACCTCCAAACATAATTTCCAA-ACCT-CGAGGCAAAACATTTTAAATTTTCAAAGTTTC
* *
14959660 AACGCCTCTATTA-TGAGGAGTATTCAAAGATTTTTGAGATTT
64 AACGCCTCTATTACT-AGGAGCATTCAAAGATTTTTAAGATTT
14959702 GTAAGTCTTC
Statistics
Matches: 94, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
126 26 0.28
127 66 0.70
128 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.33
Consensus pattern (126 bp):
TCAAAGACCTCCAAACATAATTTCCAAACCTCGAGGCAAAACATTTTAAATTTTCAAAGTTTCAA
CGCCTCTATTACTAGGAGCATTCAAAGATTTTTAAGATTTATGAGGCCTCCGAGCATAATC
Found at i:14960620 original size:145 final size:145
Alignment explanation
Indices: 14960357--14960753 Score: 451
Period size: 145 Copynumber: 2.7 Consensus size: 145
14960347 GAGAAGTGCA
* ** ** * *
14960357 AAATTACCAATATACCCCTATAAGTGTATTTTTGTAATTTGGCCTTCCTAAGCTTGAAATTTCAT
1 AAATTACCAAAATACCCCTATAAGCATATTTTTGTAATTTAACCTTCCTAAGCTCGAATTTTCAT
** * * *
14960422 -AAAGCTTTCCAAACCTTAATTTCATAATATTTTATGATTTTTAGTGTATTTGAAATCACAGCAG
66 GAAA-CTTTTTAAATCTTAATTTCATAATATTTCATGATTTTTAGTGCATTTGAAATCACAGCAG
14960486 TACCCCAAGAAATGTG
130 TACCCCAAGAAATGTG
*
14960502 AAATTACCAAAATACCCCTATAAGCATATTTTTGTAATTTAACCTTCCTAAACTCGAATTTTCAT
1 AAATTACCAAAATACCCCTATAAGCATATTTTTGTAATTTAACCTTCCTAAGCTCGAATTTTCAT
* * * *
14960567 GAAACTTTTTATATCTTAATTTTATAATATTTCACGATTTTTAGTGCATTTGAAATCATAGCAGT
66 GAAACTTTTTAAATCTTAATTTCATAATATTTCATGATTTTTAGTGCATTTGAAATCACAGCAGT
* * *
14960632 ATCCCGAGAAATTTG
131 ACCCCAAGAAATGTG
* * * * * ** * * *
14960647 AGATTACTAAAATACCCCTACAGGGATATTTTCATAATTTAA-TTTTCTCAAGCTCAAATTTTCA
1 AAATTACCAAAATACCCCTATAAGCATATTTTTGTAATTTAACCTTCCT-AAGCTCGAATTTTCA
*
14960711 TGAAA-TTTTTCAGAT-TTCAATTTCATAATATTTCATGATTTTT
65 TGAAACTTTTT-AAATCTT-AATTTCATAATATTTCATGATTTTT
14960754 GGGGTTTTAA
Statistics
Matches: 214, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
144 11 0.05
145 200 0.93
146 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (145 bp):
AAATTACCAAAATACCCCTATAAGCATATTTTTGTAATTTAACCTTCCTAAGCTCGAATTTTCAT
GAAACTTTTTAAATCTTAATTTCATAATATTTCATGATTTTTAGTGCATTTGAAATCACAGCAGT
ACCCCAAGAAATGTG
Found at i:14961810 original size:21 final size:21
Alignment explanation
Indices: 14961771--14961810 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14961761 ACTATTTGCT
*
14961771 TGTTATTTTAATTTAGTTTCA
1 TGTTATTTTAATATAGTTTCA
* *
14961792 TGTTATTTTACTATGGTTT
1 TGTTATTTTAATATAGTTT
14961811 TATGATAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.05, G:0.12, T:0.62
Consensus pattern (21 bp):
TGTTATTTTAATATAGTTTCA
Found at i:14963541 original size:16 final size:16
Alignment explanation
Indices: 14963520--14963552 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14963510 GAACTCATGG
14963520 AAGTAGATGTTCTTGA
1 AAGTAGATGTTCTTGA
14963536 AAGTAGATGTTCTTGA
1 AAGTAGATGTTCTTGA
14963552 A
1 A
14963553 TCTCTTATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (16 bp):
AAGTAGATGTTCTTGA
Found at i:14966863 original size:32 final size:32
Alignment explanation
Indices: 14966797--14966871 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 32
14966787 TATATTTGAT
*
14966797 AATTTATATATTTATATTATATAAAATATTAA
1 AATTTATATATTTATATTATATAAAATATCAA
* * ***
14966829 AATTTATGTATTTTTATTATATTTTATATCAA
1 AATTTATATATTTATATTATATAAAATATCAA
14966861 AA-TTATATATT
1 AATTTATATATT
14966872 ATAATTTATA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 8 0.22
32 28 0.78
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (32 bp):
AATTTATATATTTATATTATATAAAATATCAA
Found at i:14967698 original size:19 final size:19
Alignment explanation
Indices: 14967661--14967703 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
14967651 ACTCGTCAGC
*
14967661 TTAATCAAATTTTTATATT
1 TTAATCAAATTTTAATATT
14967680 TTAAT-AAATTTTAATTATT
1 TTAATCAAATTTTAA-TATT
14967699 TTAAT
1 TTAAT
14967704 TAATAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
TTAATCAAATTTTAATATT
Found at i:14978982 original size:21 final size:19
Alignment explanation
Indices: 14978958--14978997 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
14978948 AATGGTCAAA
14978958 ATCATTGTTAAATATCTATTT
1 ATCATTGTTAAA-AT-TATTT
14978979 ATCATTGTTAAAATTATTT
1 ATCATTGTTAAAATTATTT
14978998 TGAAATGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 2 0.11
21 12 0.63
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (19 bp):
ATCATTGTTAAAATTATTT
Found at i:14979254 original size:34 final size:32
Alignment explanation
Indices: 14979179--14979254 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 32
14979169 CAACAATAAA
* *
14979179 TTTTGGTTACAAAAAATTTTATGTAACATTTT
1 TTTTGGTTACAAAAAATTTTATATAACATCTT
14979211 TATTATGGTTACAAAAAATTTT-TCATAACAATACTT
1 T-TT-TGGTTACAAAAAATTTTAT-ATAAC-AT-CTT
14979247 TTTTGGTT
1 TTTTGGTT
14979255 GCCAAATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
32 1 0.03
33 3 0.08
34 26 0.70
35 4 0.11
36 3 0.08
ACGTcount: A:0.34, C:0.08, G:0.09, T:0.49
Consensus pattern (32 bp):
TTTTGGTTACAAAAAATTTTATATAACATCTT
Found at i:14979497 original size:22 final size:20
Alignment explanation
Indices: 14979469--14979508 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
14979459 ACAAAAAATT
14979469 TTACATAACAATATTATTGTGG
1 TTACATAAC-ATATT-TTGTGG
14979491 TTACATAACATATTTTGT
1 TTACATAACATATTTTGT
14979509 AATGATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 5 0.28
22 9 0.50
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (20 bp):
TTACATAACATATTTTGTGG
Found at i:14979525 original size:102 final size:101
Alignment explanation
Indices: 14979348--14979685 Score: 301
Period size: 102 Copynumber: 3.3 Consensus size: 101
14979338 ACAAGCATAT
* * * * *
14979348 AATTTGGTTACAAAAAGTTTTACATAACAATATTATTTTGGTTATATAAAAAATTTTGTAACGGT
1 AATTTAGTTACAAAAACTTTTACATAACAATATTATTTTGGTTATATAACATATTTTGTAACGAT
* *
14979413 TACACGTCGTTGTTTTAACTTTTTTCAACAACTATAA
66 TAAATGTCGTT-TTTTAACTTTTTTCAACAACTATAA
* * * *
14979450 AATTTAGTTACAAAAAATTTTACATAACAATATTATTGTGGTTACATAACATATTTTGTAATGAT
1 AATTTAGTTACAAAAACTTTTACATAACAATATTATTTTGGTTATATAACATATTTTGTAACGAT
* * * * *
14979515 TAAATATCGTTTGTTAAACTCCTTTTCAGCAACCATAA
66 TAAATGTCGTTT-TTTAACT-TTTTTCAACAACTATAA
* * * * * * *
14979553 AAGTTGGTT--ATAAACTCTTA-AGTAATAATATTATTTTAGTTATATAACATATTTTGTAACAA
1 AATTTAGTTACAAAAACTTTTACA-TAACAATATTATTTTGGTTATATAACATATTTTGTAACGA
* * * *
14979615 TTAAATGTTGTCATTTTAA-TTTCATTTTACCAACCT-TAA
65 TTAAATGTCGT-TTTTTAACTTT--TTTCAACAA-CTATAA
* *
14979654 AATTTAGTTACAAAACCTTTT-CGTAACAATAT
1 AATTTAGTTACAAAAACTTTTACATAACAATAT
14979686 GAATTTTTGT
Statistics
Matches: 185, Mismatches: 41, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
99 1 0.01
100 2 0.01
101 73 0.39
102 81 0.44
103 28 0.15
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.42
Consensus pattern (101 bp):
AATTTAGTTACAAAAACTTTTACATAACAATATTATTTTGGTTATATAACATATTTTGTAACGAT
TAAATGTCGTTTTTTAACTTTTTTCAACAACTATAA
Found at i:14981861 original size:24 final size:23
Alignment explanation
Indices: 14981830--14981879 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 23
14981820 AAATATTTAA
*
14981830 AATTATTTATTATTAAAGTATATT
1 AATTATTTATTATTAAAAT-TATT
14981854 AATTATTTATTATTAAAATTATT
1 AATTATTTATTATTAAAATTATT
14981877 AAT
1 AAT
14981880 ATTCAAGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
AATTATTTATTATTAAAATTATT
Found at i:14981934 original size:19 final size:18
Alignment explanation
Indices: 14981857--14981941 Score: 56
Period size: 18 Copynumber: 4.8 Consensus size: 18
14981847 GTATATTAAT
*
14981857 TATTTATTATTAAAAT--
1 TATTTAATATTAAAATAA
14981873 TA-TTAATATTCAAGAATAA
1 TATTTAATATT-AA-AATAA
* *
14981892 T-TAT-ATTTTAATAATAA
1 TATTTAATATTAA-AATAA
*
14981909 TATTTAATATTAAAATAT
1 TATTTAATATTAAAATAA
14981927 TATATTAATA-TAAAA
1 TAT-TTAATATTAAAA
14981942 ACATTTAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
15 7 0.13
16 4 0.07
17 11 0.20
18 18 0.33
19 14 0.26
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (18 bp):
TATTTAATATTAAAATAA
Found at i:14981948 original size:34 final size:35
Alignment explanation
Indices: 14981875--14981966 Score: 84
Period size: 34 Copynumber: 2.6 Consensus size: 35
14981865 ATTAAAATTA
* * *
14981875 TTAATATTCAAGAATAATTATATT-TTAATAATAATAT
1 TTAATATT-AA-AAT-ATTATATTAATAATAAAAACAT
14981912 TTAATATTAAAATATTATATTAAT-ATAAAAACAT
1 TTAATATTAAAATATTATATTAATAATAAAAACAT
*
14981946 TTAA-AATAAAACTATT-TATTA
1 TTAATATTAAAA-TATTATATTA
14981967 TTCTTTATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
33 11 0.22
34 24 0.49
35 4 0.08
36 2 0.04
37 8 0.16
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.43
Consensus pattern (35 bp):
TTAATATTAAAATATTATATTAATAATAAAAACAT
Found at i:14981993 original size:28 final size:27
Alignment explanation
Indices: 14981962--14982036 Score: 66
Period size: 28 Copynumber: 2.8 Consensus size: 27
14981952 TAAAACTATT
14981962 TATTATTCTTTATATTAATATTTCAAAA
1 TATTATT-TTTATATTAATATTTCAAAA
*** *
14981990 TATT-TAAAATAGTATTAATATTTTAAAA
1 TATTAT-TTTTA-TATTAATATTTCAAAA
14982018 TATTA-TTTT-TATTAATATT
1 TATTATTTTTATATTAATATT
14982037 AAAATAGTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
25 10 0.27
27 4 0.11
28 23 0.62
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (27 bp):
TATTATTTTTATATTAATATTTCAAAA
Found at i:14982011 original size:18 final size:19
Alignment explanation
Indices: 14981988--14982024 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14981978 AATATTTCAA
14981988 AATA-TTTAAAATAGTATT
1 AATATTTTAAAATAGTATT
*
14982006 AATATTTTAAAATATTATT
1 AATATTTTAAAATAGTATT
14982025 TTTATTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
AATATTTTAAAATAGTATT
Found at i:14982039 original size:42 final size:47
Alignment explanation
Indices: 14981988--14982075 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 47
14981978 AATATTTCAA
*
14981988 AATATTTAAAATAGTATTA-ATATT-TTAAAATA-TTAT-TTTTATT
1 AATATTTAAAATAGTAATATATATTATTAAAATATTTATATTTTATT
*
14982031 AATA-TTAAAATAGTAATATTTATTATTAAAATATTTATATTTTAT
1 AATATTTAAAATAGTAATATATATTATTAAAATATTTATATTTTAT
14982076 ATTAAAAGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
42 13 0.33
43 8 0.21
44 8 0.21
45 4 0.10
46 6 0.15
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (47 bp):
AATATTTAAAATAGTAATATATATTATTAAAATATTTATATTTTATT
Found at i:14982059 original size:21 final size:21
Alignment explanation
Indices: 14982032--14982082 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
14982022 ATTTTTATTA
14982032 ATATTAAAATAGTAATA-TTT
1 ATATTAAAATAGTAATATTTT
* *
14982052 ATTATTAAAATATTTATATTTT
1 A-TATTAAAATAGTAATATTTT
14982074 ATATTAAAA
1 ATATTAAAA
14982083 GTATCTATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 1 0.04
21 22 0.81
22 4 0.15
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
ATATTAAAATAGTAATATTTT
Found at i:14988425 original size:162 final size:160
Alignment explanation
Indices: 14988053--14988658 Score: 1019
Period size: 159 Copynumber: 3.8 Consensus size: 160
14988043 TAGTTGTTGA
*
14988053 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAAGAG
1 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
*
14988118 TATGCAAGAAAAACTACTG-TTTCACTTGCAGAGGCTCCGTCGTCGGATTATTTAAAG---AAAA
66 TATGCAAGAAAAACTACTGTTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAAA
* * * *
14988179 ATCAAGATCAACCAATTAATTAATTATCGA
131 ATCAAAATCAGCCAAGTAATTAATTATCGG
14988209 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
1 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
14988274 TATGCAAGAAAAACTACTG-TTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAAA
66 TATGCAAGAAAAACTACTGTTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAG---AAAA
*
14988338 AAAATCAAAATCAGCGAAGTAATTAATTATCGG
128 AAAATCAAAATCAGCCAAGTAATTAATTATCGG
14988371 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
1 AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
* * *
14988436 TATGCAAGAAAAACTACTGTTTTTACTTGTATAGGCTCCGTCGTCGGATTAATTAAAGAAAAAAA
66 TATGCAAGAAAAACTACTGTTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAAA
14988501 ATC-AAATCAGCCAAGTAATTAATTATCGG
131 ATCAAAATCAGCCAAGTAATTAATTATCGG
14988530 AAATTATTCCTC-ATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGA
1 AAATTATT-CTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGA
* *
14988594 GTATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAA
65 GTATGCAAGAAAAACTACTGTTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAA
14988659 GAAAAAAAAA
Statistics
Matches: 430, Mismatches: 12, Indels: 13
0.95 0.03 0.03
Matches are distributed among these distances:
156 120 0.28
159 149 0.35
160 13 0.03
162 113 0.26
163 35 0.08
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (160 bp):
AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGGAG
TATGCAAGAAAAACTACTGTTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAAA
ATCAAAATCAGCCAAGTAATTAATTATCGG
Found at i:14988725 original size:25 final size:22
Alignment explanation
Indices: 14988687--14988748 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 22
14988677 AAAATCAAAG
*
14988687 TCAAATAAAAAAAAATTCAAAAAAT
1 TCAAA-AAAAAAAAA--CAAAAAAA
14988712 TCAAAAAAACAAAAACAAAAAAA
1 TCAAAAAAA-AAAAACAAAAAAA
*
14988735 ACAAAAAAAAAAAA
1 TCAAAAAAAAAAAA
14988749 AAACCTGGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
22 5 0.15
23 15 0.44
24 4 0.12
25 10 0.29
ACGTcount: A:0.81, C:0.10, G:0.00, T:0.10
Consensus pattern (22 bp):
TCAAAAAAAAAAAACAAAAAAA
Found at i:14988726 original size:9 final size:9
Alignment explanation
Indices: 14988722--14988751 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14988712 TCAAAAAAAC
14988722 AAAAACAAA
1 AAAAACAAA
14988731 AAAAACAAA
1 AAAAACAAA
14988740 AAAAA-AAA
1 AAAAACAAA
14988748 AAAA
1 AAAA
14988752 CCTGGAGCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAACAAA
Found at i:14988750 original size:15 final size:15
Alignment explanation
Indices: 14988714--14988750 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
14988704 CAAAAAATTC
*
14988714 AAAAAAACAAAAACA
1 AAAAAAACAAAAAAA
14988729 AAAAAAACAAAAAAA
1 AAAAAAACAAAAAAA
14988744 AAAAAAA
1 AAAAAAA
14988751 ACCTGGAGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAACAAAAAAA
Found at i:14988790 original size:15 final size:16
Alignment explanation
Indices: 14988759--14988808 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 16
14988749 AAACCTGGAG
*
14988759 CGGCTCGGATCGCGGCT
1 CGGCTCGGCT-GCGGCT
*
14988776 CGGCTTGG-TGCGGCT
1 CGGCTCGGCTGCGGCT
14988791 CGGCTCGGCT-CGGCT
1 CGGCTCGGCTGCGGCT
14988806 CGG
1 CGG
14988809 AGGGGCTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 21 0.70
16 2 0.07
17 7 0.23
ACGTcount: A:0.02, C:0.34, G:0.44, T:0.20
Consensus pattern (16 bp):
CGGCTCGGCTGCGGCT
Found at i:14988794 original size:5 final size:5
Alignment explanation
Indices: 14988771--14988808 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
14988761 GCTCGGATCG
*
14988771 CGGCT CGGCT TGG-T GCGGCT CGGCT CGGCT CGGCT CGG
1 CGGCT CGGCT CGGCT -CGGCT CGGCT CGGCT CGGCT CGG
14988809 AGGGGCTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 1 0.03
5 27 0.93
6 1 0.03
ACGTcount: A:0.00, C:0.34, G:0.45, T:0.21
Consensus pattern (5 bp):
CGGCT
Found at i:14989057 original size:19 final size:19
Alignment explanation
Indices: 14989028--14989072 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
14989018 GAACGCCGGT
*
14989028 GCCGGATTCTGGAAATTTC
1 GCCGGAATCTGGAAATTTC
* *
14989047 GTCGGAATCTGGGAATTTC
1 GCCGGAATCTGGAAATTTC
14989066 GCCGGAA
1 GCCGGAA
14989073 ATTGGCCGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (19 bp):
GCCGGAATCTGGAAATTTC
Found at i:14989172 original size:31 final size:31
Alignment explanation
Indices: 14989134--14989206 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
14989124 AAACTGGGTC
*
14989134 TGTCGCCGGAAACTTC-AAAGTTCGCCGGAAT
1 TGTCGCCGGAAAATTCAAAAG-TCGCCGGAAT
14989165 TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
1 TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
*
14989196 TTTCGCCGGAA
1 TGTCGCCGGAA
14989207 TCTGGAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 35 0.90
32 4 0.10
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (31 bp):
TGTCGCCGGAAAATTCAAAAGTCGCCGGAAT
Found at i:14989628 original size:3 final size:3
Alignment explanation
Indices: 14989620--14989653 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
14989610 GATAATTAAA
14989620 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14989654 GATAAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:14989994 original size:1 final size:1
Alignment explanation
Indices: 14989990--14990088 Score: 90
Period size: 1 Copynumber: 99.0 Consensus size: 1
14989980 TTATTTTTGA
* * * * ** ** *
14989990 TTTTTTTTTATTTTTGTTTTTATTTTTTTTTATTTTTTTGATTTTTTTGATTTTTTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
14990055 TGTTTTTTGTTTTTTTTTTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14990089 GGCCGAAGCT
Statistics
Matches: 76, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 76 1.00
ACGTcount: A:0.05, C:0.00, G:0.07, T:0.88
Consensus pattern (1 bp):
T
Found at i:14989999 original size:17 final size:16
Alignment explanation
Indices: 14989977--14990089 Score: 106
Period size: 16 Copynumber: 6.8 Consensus size: 16
14989967 CAACTCAACA
*
14989977 TTTTTATTTTTGATTT
1 TTTTTTTTTTTGATTT
14989993 TTTTTTATTTTTG-TTT
1 TTTTTT-TTTTTGATTT
14990009 TTATTTTTTTTT-ATTT
1 TT-TTTTTTTTTGATTT
14990025 TTTTGATTTTTTTGATTTT
1 TTTT--TTTTTTTGA-TTT
14990044 TTTTGTTTTTTTG-TTT
1 TTTT-TTTTTTTGATTT
**
14990060 TTTGTTTTTTTTTTTTT
1 TTT-TTTTTTTTGATTT
14990077 GTTTTTTTTTTTG
1 -TTTTTTTTTTTG
14990090 GCCGAAGCTC
Statistics
Matches: 83, Mismatches: 4, Indels: 19
0.78 0.04 0.18
Matches are distributed among these distances:
15 2 0.02
16 33 0.40
17 29 0.35
18 12 0.14
19 7 0.08
ACGTcount: A:0.06, C:0.00, G:0.08, T:0.86
Consensus pattern (16 bp):
TTTTTTTTTTTGATTT
Found at i:14990002 original size:10 final size:10
Alignment explanation
Indices: 14989978--14990086 Score: 93
Period size: 9 Copynumber: 10.9 Consensus size: 10
14989968 AACTCAACAT
14989978 TTTTATTTTTGA
1 TTTT-TTTTT-A
14989990 TTTTTTTTTA
1 TTTTTTTTTA
14990000 TTTTTGTTTTTA
1 -TTTT-TTTTTA
14990012 TTTTTTTTTA
1 TTTTTTTTTA
*
14990022 -TTTTTTTGA
1 TTTTTTTTTA
*
14990031 -TTTTTTTGA
1 TTTTTTTTTA
14990040 TTTTTTTTGT-
1 TTTTTTTT-TA
*
14990050 TTTTTTGTT-
1 TTTTTTTTTA
*
14990059 TTTTGTTTT-
1 TTTTTTTTTA
*
14990068 TTTTTTTTTG
1 TTTTTTTTTA
14990078 TTTTTTTTT
1 TTTTTTTTT
14990087 TTGGCCGAAG
Statistics
Matches: 86, Mismatches: 6, Indels: 12
0.83 0.06 0.12
Matches are distributed among these distances:
9 33 0.38
10 30 0.35
11 13 0.15
12 10 0.12
ACGTcount: A:0.06, C:0.00, G:0.07, T:0.86
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:14990224 original size:42 final size:41
Alignment explanation
Indices: 14990096--14990914 Score: 1136
Period size: 42 Copynumber: 20.0 Consensus size: 41
14990086 TTTGGCCGAA
* * *
14990096 GCTCCTCTAAACAGAGACTCAACGACTTTTG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
*
14990137 GCTCCTCTAAACAGAGGCA--ACGGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCAC-GACTTTGAAAAGTAAATT
* *
14990177 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATT
*
14990219 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
14990260 GCTCCTCTAAACAGAGGCA--ACGAACTTTGAAATGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATT
*
14990300 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
* *
14990342 GCTCCTCTAAACAGAGGCA--ACGAACTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATT
*
14990382 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
14990423 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
14990465 GCTCCTCTAAACAGAGGCACCACGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATT
14990507 GCTCCTCTAAACAGAGGCA--ACGGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCAC-G-ACTTTGAAAAGTAAATT
*
14990548 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
*
14990590 GCTCCTCTAAACAGAGGCA--ACGAACTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATT
14990630 GCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATT
14990670 GCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATT
*
14990710 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
*
14990752 GCTCCTCTAAACAGAGGCA--ACGAACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTT-GAAAAGTAAATT
* *
14990793 GCTCCTCTAAACAGAGGCACCATGACTTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATT
14990835 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
* * *
14990877 GCTCCTCTAAACAGAGGTACGA--ACTTGGAAAAGTAAAT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAAT
14990915 ACTCCTAGAC
Statistics
Matches: 723, Mismatches: 28, Indels: 56
0.90 0.03 0.07
Matches are distributed among these distances:
39 22 0.03
40 218 0.30
41 194 0.27
42 276 0.38
43 13 0.02
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:14990315 original size:123 final size:123
Alignment explanation
Indices: 14990096--14990914 Score: 1289
Period size: 123 Copynumber: 6.7 Consensus size: 123
14990086 TTTGGCCGAA
* * * *
14990096 GCTCCTCTAAACAGAGACTCAACGACTTTTG-AAAGTAAATTGCTCCTCTAAACAGAGGCAACGG
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGA
* * *
14990160 ACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAAATAAATT
65 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
*
14990219 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAA
*
14990284 CTTTGAAATGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
66 CTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
* * *
14990342 GCTCCTCTAAACAGAGGCA--ACGAACTTGGAAAAATAAATTGCTCCTCTCAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA--AC
14990405 G-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
63 GAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
14990465 GCTCCTCTAAACAGAGGCACCACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGG
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAAC-G
14990530 AACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
64 AACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
*
14990590 GCTCCTCTAAACAGAGGCA--ACGAACTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGA
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGA
*
14990653 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAGTAAATT
65 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAATAAATT
*
14990710 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGCAACGA
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGA
* * *
14990775 ACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGCACCATGACTTTGAAAAAATAAATT
65 ACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
*
14990835 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG-TACGA
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGA
*
14990899 ACTTGGAAAAGTAAAT
65 ACTTTGAAAAGTAAAT
14990915 ACTCCTAGAC
Statistics
Matches: 650, Mismatches: 29, Indels: 34
0.91 0.04 0.05
Matches are distributed among these distances:
120 33 0.05
121 12 0.02
122 117 0.18
123 287 0.44
124 17 0.03
125 181 0.28
126 3 0.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (123 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAA
CTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
Done.