Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 82 of 147
Found at i:15131897 original size:690 final size:698
Alignment explanation
Indices: 15130557--15131943 Score: 1981
Period size: 690 Copynumber: 2.0 Consensus size: 698
15130547 TATATTAAAT
15130557 ATAAAACATGAAAAAATAGTAAGAGAATAATGCCGCCCTTATAACATTTTTATTTTTAAATTTAT
1 ATAAAACATGAAAAAATAGTAAGAGAATAATGCCGCCCTTATAACATTTTTATTTTTAAATTTAT
* * * * ** * *
15130622 ATTTAATGCACTGTTAGTATATAAATCATTTATATTATCGGTGAATCAGATGATATTACCTAATT
66 ATTTAATGAACTATCAGTATATAAATCATTTATAATATCAATGAATCAGATAATATTACATAATT
* * * *
15130687 AATGAGCAAATATCAATCTTGAAAGTAAATATACTAAAATTAACATTTAAAAAAAACTTATTCAT
131 AATGAACAAATATCAATCTTGAAAATAAATATACAAAAATTAACATTTAAAAAAAACTTACTCAT
* * * **
15130752 TAATGAGATATCATAATTAGATTTATTTCATTAATAAAAAGACATCATCTAATTCAATATTAGTG
196 TAATGAGATATCATAATCAGATTCACTTCATTAATAAAAAGACATCATCTAATTCAATAACAGTG
* *
15130817 AATAAAATATATACATTAACAATGATATCAAATATAATTTTTTTATTTTTTATTTTATTCTCCAC
261 AATAAAATATATACATTAACAATGATATCAAATATAATTTTTTTATATGTTATTTTATTCTCCAC
15130882 TTCAGTGGAGGCATCTTTTAGTGGAGACCACGTTCTTAACAGGGACTCGAAACCCCTTGTAGTGA
326 TT-A-T----G--TC---TAGTGGAGACCACGTTCTTAACAGGGACTCGAAACCCCTTGTAGTGA
* * ** *
15130947 AAATTAAATGAAAGCTACAGTTTAAAATATTTGCTAACTTGAACATTACCTTTATTAATATTCGT
380 AAATCAAATAAAAGCTACAGCCTAAAATATTTGCTAACTTGAACATCACCTTTATTAATATTCGT
* * *
15131012 ATAGATTAGATTTGAATAATTGAATCCCATCCTAATATTGTAGACATCAACAAAATTTATTGTAG
445 ATAGATTAGATTTGAATAAGTGAATCCCATCCTAATATTGTAGACACCAACAAAATTTATTGTAA
*
15131077 CCCTTCATTGCTTTTATTTGGTACCACTGCAAAGTCACATGCTGCACATGAATCTGTTTGGTAGG
510 CCCTTCATTGCTTTTATTTGGTACCACTGCAAAGTCACATGATGCACATGAATCTGTTTGGTAGG
* * *
15131142 AGAGATTTAGTCTGTACCGTTACTCTTACTAATTTTATTTTCTGCTCAAGTCGTAGTAAGTTTGT
575 AGAGATTTAGTCTGTACCATTACTCTTACTAATTTTATTTTCTACTCAAGTAGTAGTAAGTTTGT
*
15131207 ATTTGTTTTAGAAATCCGAGAATTTAATTGTCGGACGAATTAGACCGATAATCACCATC
640 ATTTGTTTTAGAAATCCGAGAATTTAATTGTCGGAAGAATTAGACCGATAATCACCATC
* * *
15131266 ATAAAACATGAAAAAATAGTAAGAGAATAATGCTGCTCTTATAACATTTTTATTTTTGAATTTAT
1 ATAAAACATGAAAAAATAGTAAGAGAATAATGCCGCCCTTATAACATTTTTATTTTTAAATTTAT
* * * * * * *
15131331 ATTTGATGAATTATCAGTATATAAATCCTTTATAATGTTAATGAATCAGATAATGTTACATCATT
66 ATTTAATGAACTATCAGTATATAAATCATTTATAATATCAATGAATCAGATAATATTACATAATT
* * * *
15131396 AATTAACAAATATTAATCTTTAAAATAAATATACAAAAATTAACATTTAACAAAAA-TTACTCAT
131 AATGAACAAATATCAATCTTGAAAATAAATATACAAAAATTAACATTTAAAAAAAACTTACTCAT
* * * * *
15131460 TAATG-GCATATCATCATCAGATTCACTTCATTAATAAGAAA-ATATTATCTGATTTAATAACAG
196 TAATGAG-ATATCATAATCAGATTCACTTCATTAATAA-AAAGACATCATCTAATTCAATAACAG
* * *
15131523 TGAATAAAATTTATATATTAATAAT-ATATCAAATATAATTTTTTT-TATGTT-TTTTATTCTCC
259 TGAATAAAATATATACATTAACAATGATATCAAATATAATTTTTTTATATGTTATTTTATTCTCC
*
15131585 AC-T-T-TC-AGTGGAGACCACGTTCTTAACAGGGATTCGAAACCCCTTGTAGTGAAAATCAAAT
324 ACTTATGTCTAGTGGAGACCACGTTCTTAACAGGGACTCGAAACCCCTTGTAGTGAAAATCAAAT
15131646 AAAAGCTACAGCCTAAAATATTTGCTAACTTGAACATCACCTTTATTAATATTCGTATAG-TTAT
389 AAAAGCTACAGCCTAAAATATTTGCTAACTTGAACATCACCTTTATTAATATTCGTATAGATTA-
* * *
15131710 GCTTTGAATAAGTGAATCCCATCCTAATATTGTAGATACCAACGAAATTTATTGTAACCCTTCAT
453 GATTTGAATAAGTGAATCCCATCCTAATATTGTAGACACCAACAAAATTTATTGTAACCCTTCAT
* *
15131775 TG-TTTTAATTTGGTACTAGTGCAAAGTCACATGATGCACATGAATCTGTTTGGTAGGAGAGATT
518 TGCTTTT-ATTTGGTACCACTGCAAAGTCACATGATGCACATGAATCTGTTTGGTAGGAGAGATT
*
15131839 TTGTCTGT-CCTATTACTCTTACTAATTTTATTTTCTACTCAAGTAGTAGTAAGTTTGTATTTGT
582 TAGTCTGTACC-ATTACTCTTACTAATTTTATTTTCTACTCAAGTAGTAGTAAGTTTGTATTTGT
*
15131903 TTTAGAAATCCGAGAATTTAATTGTCGGAAGAATTGGACCG
646 TTTAGAAATCCGAGAATTTAATTGTCGGAAGAATTAGACCG
15131944 TTGTTGACCA
Statistics
Matches: 611, Mismatches: 62, Indels: 29
0.87 0.09 0.04
Matches are distributed among these distances:
689 9 0.01
690 320 0.52
694 2 0.00
701 1 0.00
704 1 0.00
705 13 0.02
706 4 0.01
707 21 0.03
708 76 0.12
709 164 0.27
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (698 bp):
ATAAAACATGAAAAAATAGTAAGAGAATAATGCCGCCCTTATAACATTTTTATTTTTAAATTTAT
ATTTAATGAACTATCAGTATATAAATCATTTATAATATCAATGAATCAGATAATATTACATAATT
AATGAACAAATATCAATCTTGAAAATAAATATACAAAAATTAACATTTAAAAAAAACTTACTCAT
TAATGAGATATCATAATCAGATTCACTTCATTAATAAAAAGACATCATCTAATTCAATAACAGTG
AATAAAATATATACATTAACAATGATATCAAATATAATTTTTTTATATGTTATTTTATTCTCCAC
TTATGTCTAGTGGAGACCACGTTCTTAACAGGGACTCGAAACCCCTTGTAGTGAAAATCAAATAA
AAGCTACAGCCTAAAATATTTGCTAACTTGAACATCACCTTTATTAATATTCGTATAGATTAGAT
TTGAATAAGTGAATCCCATCCTAATATTGTAGACACCAACAAAATTTATTGTAACCCTTCATTGC
TTTTATTTGGTACCACTGCAAAGTCACATGATGCACATGAATCTGTTTGGTAGGAGAGATTTAGT
CTGTACCATTACTCTTACTAATTTTATTTTCTACTCAAGTAGTAGTAAGTTTGTATTTGTTTTAG
AAATCCGAGAATTTAATTGTCGGAAGAATTAGACCGATAATCACCATC
Found at i:15135912 original size:30 final size:29
Alignment explanation
Indices: 15135852--15135927 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
15135842 TTTGGTTTGA
*
15135852 AATAAAAGTTTATTTGAATACAAATTAAAT
1 AATAAAAGTTTATTT-AATACAAATAAAAT
*
15135882 AATAAGAGTTTATTTAAGTA-AAATAAAA-
1 AATAAAAGTTTATTTAA-TACAAATAAAAT
*
15135910 ATATAAAAGCTTATTTAA
1 A-ATAAAAGTTTATTTAA
15135928 AAAAGTGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
28 1 0.03
29 23 0.57
30 16 0.40
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (29 bp):
AATAAAAGTTTATTTAATACAAATAAAAT
Found at i:15136114 original size:21 final size:22
Alignment explanation
Indices: 15136073--15136122 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
15136063 TGTATTTAAT
*
15136073 ATTTCAATAATTTTAAAATT-G
1 ATTTTAATAATTTTAAAATTGG
*
15136094 ACTTTTAATAA-TTTCAAATTGG
1 A-TTTTAATAATTTTAAAATTGG
15136116 ATTTTAA
1 ATTTTAA
15136123 ACTTAAGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (22 bp):
ATTTTAATAATTTTAAAATTGG
Found at i:15137550 original size:44 final size:43
Alignment explanation
Indices: 15137501--15137618 Score: 116
Period size: 44 Copynumber: 2.7 Consensus size: 43
15137491 AATAATAATT
15137501 TAATAGTAAATC-ATATATAACTTAGTAGTAA-ATTAGTGATAACA
1 TAATAGTAAATCAATA-ATAACTTAGTAGTAACATT--TGATAACA
* * * * *
15137545 TAATAGTAAATGAATGATAATTTAGTATTCAACATTTGATAACT
1 TAATAGTAAATCAATAATAACTTAGTAGT-AACATTTGATAACA
* *
15137589 TAGTAGTAAATCAATAATAACATA-TAGTAA
1 TAATAGTAAATCAATAATAACTTAGTAGTAA
15137619 TTGTATAATA
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
42 2 0.03
43 3 0.05
44 48 0.80
45 4 0.07
46 3 0.05
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.35
Consensus pattern (43 bp):
TAATAGTAAATCAATAATAACTTAGTAGTAACATTTGATAACA
Found at i:15137608 original size:22 final size:22
Alignment explanation
Indices: 15137489--15137645 Score: 95
Period size: 22 Copynumber: 7.2 Consensus size: 22
15137479 TAATGGTTAT
* *
15137489 TCAATAATAATTTAATAGTAAA
1 TCAATAATAACTTAGTAGTAAA
15137511 TC-ATATATAACTTAGTAGTAAA
1 TCAATA-ATAACTTAGTAGTAAA
* * * * *
15137533 TTAGTGATAACATAATAGTAAA
1 TCAATAATAACTTAGTAGTAAA
* * * * *
15137555 TGAATGATAATTTAGTATTCAA
1 TCAATAATAACTTAGTAGTAAA
* *
15137577 -CATTTGATAACTTAGTAGTAAA
1 TCA-ATAATAACTTAGTAGTAAA
* *
15137599 TCAATAATAACATA-TAGTAAT
1 TCAATAATAACTTAGTAGTAAA
** * *
15137620 TGTATAATAATTTAGTAATAAA
1 TCAATAATAACTTAGTAGTAAA
15137642 TCAA
1 TCAA
15137646 GTATTTGTAG
Statistics
Matches: 99, Mismatches: 31, Indels: 10
0.71 0.22 0.07
Matches are distributed among these distances:
21 20 0.20
22 76 0.77
23 3 0.03
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.36
Consensus pattern (22 bp):
TCAATAATAACTTAGTAGTAAA
Found at i:15137741 original size:22 final size:22
Alignment explanation
Indices: 15137713--15137775 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
15137703 AAAAAAGAAG
** *
15137713 TGATAACTTAATAGTTCATCAT
1 TGATAACTTAATAGTAAATCAA
*
15137735 TGATAACTTAATAATAAATCAA
1 TGATAACTTAATAGTAAATCAA
*
15137757 TAATAACTTAATAGTAAAT
1 TGATAACTTAATAGTAAAT
15137776 TAGTGATACT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.37
Consensus pattern (22 bp):
TGATAACTTAATAGTAAATCAA
Found at i:15137783 original size:44 final size:44
Alignment explanation
Indices: 15137715--15137799 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
15137705 AAAAGAAGTG
** *
15137715 ATAACTTAATAGTTCATCATTGATAAC-TTAATAATAAATCAATA
1 ATAACTTAATAGTAAATCAGTGAT-ACTTTAATAATAAATCAATA
* *
15137759 ATAACTTAATAGTAAATTAGTGATACTTTGATAATAAATCA
1 ATAACTTAATAGTAAATCAGTGATACTTTAATAATAAATCA
15137800 TTTTTGGTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.36
Consensus pattern (44 bp):
ATAACTTAATAGTAAATCAGTGATACTTTAATAATAAATCAATA
Found at i:15137956 original size:39 final size:38
Alignment explanation
Indices: 15137913--15137990 Score: 86
Period size: 39 Copynumber: 2.0 Consensus size: 38
15137903 AAGTTAATCA
15137913 ATAGAGAATAGTTA-ATCAGTGATAATTTAATAGTAAATT
1 ATAGAGAAT--TTAGATCAGTGATAATTTAATAGTAAATT
* * * *
15137952 ATAGATACTTTAGTATCATTGATAATTTAGTAGTAAATT
1 ATAGAGAATTTAG-ATCAGTGATAATTTAATAGTAAATT
15137991 GATAACTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
37 3 0.09
39 30 0.91
ACGTcount: A:0.42, C:0.04, G:0.14, T:0.40
Consensus pattern (38 bp):
ATAGAGAATTTAGATCAGTGATAATTTAATAGTAAATT
Found at i:15137958 original size:22 final size:22
Alignment explanation
Indices: 15137933--15138076 Score: 74
Period size: 22 Copynumber: 6.9 Consensus size: 22
15137923 GTTAATCAGT
*
15137933 GATAATTTAATAGTAAATTATA
1 GATAACTTAATAGTAAATTATA
* *
15137955 GAT-ACTT--TAGT--ATCATT
1 GATAACTTAATAGTAAATTATA
* *
15137972 GATAATTTAGTAGTAAA-T-T-
1 GATAACTTAATAGTAAATTATA
* * *
15137991 GATAACTTAATACTAAATCACA
1 GATAACTTAATAGTAAATTATA
* * *
15138013 AATAACGTAGTAGTAAATTATTA
1 GATAACTTAATAGTAAATTA-TA
* *
15138036 -ATAACTTAGTTGTAAATTA-A
1 GATAACTTAATAGTAAATTATA
*
15138056 TGATAATTTAATAGTAAATTA
1 -GATAACTTAATAGTAAATTA
15138077 GTTAATCAAT
Statistics
Matches: 90, Mismatches: 21, Indels: 22
0.68 0.16 0.17
Matches are distributed among these distances:
17 7 0.08
18 3 0.03
19 18 0.20
20 6 0.07
21 3 0.03
22 52 0.58
23 1 0.01
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (22 bp):
GATAACTTAATAGTAAATTATA
Found at i:15137993 original size:19 final size:19
Alignment explanation
Indices: 15137932--15137995 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 19
15137922 AGTTAATCAG
*
15137932 TGATAATTTAATAGTAAATT
1 TGATAATTTAGTAGTAAA-T
* *
15137952 ATAGATACTTTAGTA-T-CAT
1 -T-GATAATTTAGTAGTAAAT
15137971 TGATAATTTAGTAGTAAAT
1 TGATAATTTAGTAGTAAAT
15137990 TGATAA
1 TGATAA
15137996 CTTAATACTA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
17 11 0.31
18 2 0.06
19 9 0.26
20 1 0.03
21 2 0.06
22 10 0.29
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (19 bp):
TGATAATTTAGTAGTAAAT
Found at i:15138007 original size:19 final size:19
Alignment explanation
Indices: 15137969--15138008 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
15137959 CTTTAGTATC
* * *
15137969 ATTGATAATTTAGTAGTAA
1 ATTGATAACTTAATACTAA
15137988 ATTGATAACTTAATACTAA
1 ATTGATAACTTAATACTAA
15138007 AT
1 AT
15138009 CACAAATAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (19 bp):
ATTGATAACTTAATACTAA
Found at i:15138220 original size:66 final size:66
Alignment explanation
Indices: 15138144--15138267 Score: 158
Period size: 66 Copynumber: 1.9 Consensus size: 66
15138134 AGCTTTATAA
* * *
15138144 TAAATAATTAATAACTTAGTTACAAATCATAAAGAATTTAATAGCAAATTATTCATAATTTAATG
1 TAAATAATTAATAAATTAGTAACAAATCATAAAGAATTTAATAGCAAATCATTCATAATTTAATG
15138209 T
66 T
* * * * * * *
15138210 TAAATCATTAATAAATTAGTAATAAATCATGAATAATTTATTAGTAAATCATTGATAA
1 TAAATAATTAATAAATTAGTAACAAATCATAAAGAATTTAATAGCAAATCATTCATAA
15138268 CTTAGTAGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 48 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.38
Consensus pattern (66 bp):
TAAATAATTAATAAATTAGTAACAAATCATAAAGAATTTAATAGCAAATCATTCATAATTTAATG
T
Found at i:15138276 original size:22 final size:22
Alignment explanation
Indices: 15138210--15138282 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 22
15138200 AATTTAATGT
* *
15138210 TAAATCATTAATAAATTAGTAA
1 TAAATCATTGATAAATTAGTAG
* *
15138232 TAAATCA-TGAATAATTTATTAG
1 TAAATCATTG-ATAAATTAGTAG
*
15138254 TAAATCATTGATAACTTAGTAG
1 TAAATCATTGATAAATTAGTAG
*
15138276 TTAATCA
1 TAAATCA
15138283 GTAAGATCTT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
21 1 0.02
22 39 0.93
23 2 0.05
ACGTcount: A:0.47, C:0.07, G:0.08, T:0.38
Consensus pattern (22 bp):
TAAATCATTGATAAATTAGTAG
Found at i:15138638 original size:22 final size:22
Alignment explanation
Indices: 15138555--15138695 Score: 115
Period size: 22 Copynumber: 6.4 Consensus size: 22
15138545 AACAACATAT
* *
15138555 TAATAAATTAATAATAGCTTAA
1 TAATAAATTAATGATAACTTAA
* *
15138577 TAAAAAATAAATGATAACTTAA
1 TAATAAATTAATGATAACTTAA
* * * * * *
15138599 TAGTTAATCATTGCTAACTTAG
1 TAATAAATTAATGATAACTTAA
15138621 TAATAAATTAATGATAACTTAA
1 TAATAAATTAATGATAACTTAA
* *
15138643 TAATAAATTAAT-TTAAATTTAA
1 TAATAAATTAATGAT-AACTTAA
*
15138665 TAAT-AATTAATTGATAAACTTAG
1 TAATAAATTAA-TGAT-AACTTAA
*
15138688 TAGTAAAT
1 TAATAAAT
15138696 CATAAATTAG
Statistics
Matches: 92, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
21 7 0.08
22 72 0.78
23 10 0.11
24 3 0.03
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.38
Consensus pattern (22 bp):
TAATAAATTAATGATAACTTAA
Found at i:15138672 original size:11 final size:11
Alignment explanation
Indices: 15138555--15138675 Score: 66
Period size: 11 Copynumber: 11.1 Consensus size: 11
15138545 AACAACATAT
15138555 TAATAAATTAA
1 TAATAAATTAA
**
15138566 TAATAGCTTAA
1 TAATAAATTAA
* *
15138577 TAAAAAATAAA
1 TAATAAATTAA
* *
15138588 TGATAACTTAA
1 TAATAAATTAA
* * * *
15138599 TAGTTAATCAT
1 TAATAAATTAA
** * *
15138610 TGCTAACTTAG
1 TAATAAATTAA
15138621 TAATAAATTAA
1 TAATAAATTAA
* *
15138632 TGATAACTTAA
1 TAATAAATTAA
15138643 TAATAAATTAA
1 TAATAAATTAA
*
15138654 T-TTAAATTTAA
1 TAATAAA-TTAA
15138665 TAAT-AATTAA
1 TAATAAATTAA
15138675 T
1 T
15138676 TGATAAACTT
Statistics
Matches: 76, Mismatches: 32, Indels: 5
0.67 0.28 0.04
Matches are distributed among these distances:
10 9 0.12
11 66 0.87
12 1 0.01
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (11 bp):
TAATAAATTAA
Found at i:15138711 original size:18 final size:18
Alignment explanation
Indices: 15138678--15138717 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
15138668 TAATTAATTG
15138678 ATAAACTTAGTAGTAAAT
1 ATAAACTTAGTAGTAAAT
*
15138696 CATAAA-TTAGTTGTAAAT
1 -ATAAACTTAGTAGTAAAT
15138714 ATAA
1 ATAA
15138718 TTTAATAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 11 0.55
19 5 0.25
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.35
Consensus pattern (18 bp):
ATAAACTTAGTAGTAAAT
Found at i:15139034 original size:22 final size:22
Alignment explanation
Indices: 15139009--15139115 Score: 94
Period size: 22 Copynumber: 4.9 Consensus size: 22
15138999 ATAACTGTGA
*
15139009 AATAAATCATCAATAAATTTGT
1 AATAAATCATCAATAAATTTAT
* * *
15139031 AATAAATAAGT-TATAACTTTAT
1 AATAAATCA-TCAATAAATTTAT
* *
15139053 AATAAATCATCAGTAAATTAAT
1 AATAAATCATCAATAAATTTAT
*
15139075 AGTAAATCATCAAT-AATTTAGT
1 AATAAATCATCAATAAATTTA-T
*
15139097 ATTAAATCATTC-ATAAATT
1 AATAAATCA-TCAATAAATT
15139116 AGCACTAAAT
Statistics
Matches: 67, Mismatches: 13, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
21 6 0.09
22 54 0.81
23 7 0.10
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (22 bp):
AATAAATCATCAATAAATTTAT
Found at i:15139125 original size:44 final size:43
Alignment explanation
Indices: 15139009--15139226 Score: 149
Period size: 44 Copynumber: 5.0 Consensus size: 43
15138999 ATAACTGTGA
* * * *
15139009 AATAAATCA-TCAATAAATTTGTAATAAATAAGTTATAACTTTA-T
1 AATAAATCATTC-ATAAATTAGTAGTAAATCA-TGATAA-TTTAGT
* *
15139053 AATAAATCA-TCAGTAAATTAATAGTAAATCATCAATAATTTAGT
1 AATAAATCATTCA-TAAATTAGTAGTAAATCAT-GATAATTTAGT
* * * *
15139097 ATTAAATCATTCATAAATTAGCACTAAATTAATGATAATTTTAG-
1 AATAAATCATTCATAAATTAGTAGTAAA-TCATGATAA-TTTAGT
* * * * *
15139141 AGTAAATCATTGATAATTTAGTTGTAAATCATTGATAATTTAAT
1 AATAAATCATTCATAAATTAGTAGTAAATCA-TGATAATTTAGT
* * *
15139185 AATAAATCATTGATAACA-TAATAGTAAATTAATGATAATTTA
1 AATAAATCATTCATAA-ATTAGTAGTAAA-TCATGATAATTTA
15139227 ATTGTCAATT
Statistics
Matches: 140, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
43 12 0.09
44 115 0.82
45 13 0.09
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (43 bp):
AATAAATCATTCATAAATTAGTAGTAAATCATGATAATTTAGT
Found at i:15139211 original size:66 final size:66
Alignment explanation
Indices: 15139071--15139231 Score: 162
Period size: 66 Copynumber: 2.4 Consensus size: 66
15139061 ATCAGTAAAT
** * * *
15139071 TAATAGTAAATCATCAATAATTTAGTAT-TAAATCATTCATAAATTAGCACTAAATTAATGATAA
1 TAATAGTAAATCATTGATAATTTAGT-TGTAAATCATTCATAAATTAACAATAAATCAATGATAA
**
15139135 TT
65 CA
* * * * * *
15139137 TTAGAGTAAATCATTGATAATTTAGTTGTAAATCATTGATAATTTAATAATAAATCATTGATAAC
1 TAATAGTAAATCATTGATAATTTAGTTGTAAATCATTCATAAATTAACAATAAATCAATGATAAC
15139202 A
66 A
* * *
15139203 TAATAGTAAATTAATGATAATTTAATTGT
1 TAATAGTAAATCATTGATAATTTAGTTGT
15139232 CAATTATTAA
Statistics
Matches: 76, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
65 1 0.01
66 75 0.99
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (66 bp):
TAATAGTAAATCATTGATAATTTAGTTGTAAATCATTCATAAATTAACAATAAATCAATGATAAC
A
Found at i:15139237 original size:22 final size:22
Alignment explanation
Indices: 15139070--15139228 Score: 138
Period size: 22 Copynumber: 7.2 Consensus size: 22
15139060 CATCAGTAAA
**
15139070 TTAATAGTAAATCATCAATAAT
1 TTAATAGTAAATCATTGATAAT
* * * *
15139092 TTAGTATTAAATCATTCATAAA
1 TTAATAGTAAATCATTGATAAT
** * * *
15139114 TTAGCACTAAATTAATGATAAT
1 TTAATAGTAAATCATTGATAAT
* *
15139136 TTTAGAGTAAATCATTGATAAT
1 TTAATAGTAAATCATTGATAAT
* *
15139158 TTAGTTGTAAATCATTGATAAT
1 TTAATAGTAAATCATTGATAAT
* *
15139180 TTAATAATAAATCATTGATAAC
1 TTAATAGTAAATCATTGATAAT
* * *
15139202 ATAATAGTAAATTAATGATAAT
1 TTAATAGTAAATCATTGATAAT
15139224 TTAAT
1 TTAAT
15139229 TGTCAATTAT
Statistics
Matches: 106, Mismatches: 31, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 106 1.00
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (22 bp):
TTAATAGTAAATCATTGATAAT
Found at i:15141354 original size:21 final size:21
Alignment explanation
Indices: 15141302--15141356 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
15141292 TGGTAAGACT
15141302 TATTTTTTAA-TTATATTTAA
1 TATTTTTTAATTTATATTTAA
* *
15141322 TATATTTT-ATTTATCATTTTA
1 TATTTTTTAATTTAT-ATTTAA
15141343 T-TTTTTTAATTTAT
1 TATTTTTTAATTTAT
15141357 TTTCAAAGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 1 0.03
20 16 0.55
21 12 0.41
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (21 bp):
TATTTTTTAATTTATATTTAA
Found at i:15148927 original size:22 final size:22
Alignment explanation
Indices: 15148816--15148930 Score: 86
Period size: 22 Copynumber: 5.2 Consensus size: 22
15148806 CAAAAGAAAG
* * *
15148816 TTATCAATGATTTGCAATTAAA
1 TTATCAATGATTTACTACTAAA
* * * * **
15148838 TTATTATTGATTTATTATTATG
1 TTATCAATGATTTACTACTAAA
* *
15148860 TTATCATTGATTTACTACTAAG
1 TTATCAATGATTTACTACTAAA
* * * *
15148882 TTGTCAATTATTTACTATTGAA
1 TTATCAATGATTTACTACTAAA
*
15148904 TTATCAATGATTTACTGCTAAA
1 TTATCAATGATTTACTACTAAA
15148926 TTATC
1 TTATC
15148931 TTTGGTATAC
Statistics
Matches: 71, Mismatches: 22, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 71 1.00
ACGTcount: A:0.33, C:0.10, G:0.09, T:0.49
Consensus pattern (22 bp):
TTATCAATGATTTACTACTAAA
Found at i:15149318 original size:178 final size:179
Alignment explanation
Indices: 15149002--15149340 Score: 565
Period size: 178 Copynumber: 1.9 Consensus size: 179
15148992 TGATAATCAT
* *
15149002 TATATACATAAAACTCAAATATTTTATAATAAATGCCAAGTCTTTTTTACATAAATTATAAATTT
1 TATATACATAAAACTCAAATATGTTATAATAAATGCCAAGTCTTTTTTACATAAATTATAAATTC
* *
15149067 ATACATCTTAATTTTGTTACATAAAACACAATAAATCTTTGATTGTCTAATATTTATTTGGATTA
66 ATACATCTTAATTTTATTACATAAAACACAATAAATCTTTGAATGTCTAATATTTATTTGGATTA
*
15149132 TTGACTTTTGATTTTATTGTATTCATTTTTTCAAACCATTATATATATA
131 TCGACTTTTGATTTTATTGTATTCATTTTTTCAAACCATTATATATATA
* * * *
15149181 TATATATATATAACTCAAATATGTTATAAT-AATGCCAAGTCTTTTTTACGTATATTATAAATTC
1 TATATACATAAAACTCAAATATGTTATAATAAATGCCAAGTCTTTTTTACATAAATTATAAATTC
15149245 ATACATCTTAATTTTATTACATAAAACACAATAAA-CTTTTGAATGTCTAATATTTATTTGGATT
66 ATACATCTTAATTTTATTACATAAAACACAATAAATC-TTTGAATGTCTAATATTTATTTGGATT
*
15149309 ATCGACTTTTGATTTTTTTGTATTCATTTTTT
130 ATCGACTTTTGATTTTATTGTATTCATTTTTT
15149341 TAAAACTATT
Statistics
Matches: 149, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
177 1 0.01
178 121 0.81
179 27 0.18
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (179 bp):
TATATACATAAAACTCAAATATGTTATAATAAATGCCAAGTCTTTTTTACATAAATTATAAATTC
ATACATCTTAATTTTATTACATAAAACACAATAAATCTTTGAATGTCTAATATTTATTTGGATTA
TCGACTTTTGATTTTATTGTATTCATTTTTTCAAACCATTATATATATA
Found at i:15149713 original size:207 final size:207
Alignment explanation
Indices: 15149306--15149852 Score: 634
Period size: 207 Copynumber: 2.6 Consensus size: 207
15149296 ATTTATTTGG
* * * * *
15149306 ATTATCGACTTTTGATTTTTTTGTATTCATTTTTTTAAAACTATTGTTT-TTAAAATATATTGAT
1 ATTATCGACTTTTGATTTTCTTGTATTCATTTTTTTAAAACCATTATTTGTTAAAATTTATTAAT
* * * * **
15149370 -TAACCTTTTAATTTTGTAACATTTATATTTTTGACTTTTGATTTTCTTGTGACTCTTCTCTCTC
66 CAAACC-TTTGATTTTGTAACATTTATATTTTTTACTTTTGATTTTCTTGTGA---TT-TAT-GG
* * * * **
15149434 TTTTAAGGATGCGAGTTATATGAGTGTCTTTTATGTATATGTTACTCTTTTTTCTGTCAATTATT
125 TTTTAAAGATGAGAGTTATATGAGTGTCTTTCATGTATATGTTACACTTTTTTCTCCCAATTATT
*
15149499 GTTTGTCATATTACTTTA
190 ATTTGTCATATTACTTTA
*
15149517 ATTATTGACTTTTGATTTTCTTGTATTCATTTTATTT-AAACCATTATTTGTTAAAATTTATTAA
1 ATTATCGACTTTTGATTTTCTTGTATTCATTTT-TTTAAAACCATTATTTGTTAAAATTTATTAA
* * * *
15149581 TCAAACCTTCGATTTTGTAACATTTATATTTTTTAATTTTGAGTTTATTGTGATTTATGGTTTTA
65 TCAAACCTTTGATTTTGTAACATTTATATTTTTTACTTTTGATTTTCTTGTGATTTATGGTTTTA
* * * * *
15149646 ACAG-TGAGAGTTATATGAGTTTCTTTCATGTCTTTTTTACACTTTTTTCTCCCAATTCTTATTT
130 A-AGATGAGAGTTATATGAGTGTCTTTCATGTATATGTTACACTTTTTTCTCCCAATTATTATTT
15149710 GTCATATTACTTTA
194 GTCATATTACTTTA
* * *
15149724 ATTATCGATTTTTTATTTTCTTGTATTCATTTTTTCTAAAACCATTATCTGTTAAAATTTATTAA
1 ATTATCGACTTTTGATTTTCTTGTATTCATTTTTT-TAAAACCATTATTTGTTAAAATTTATTAA
* * *** * * *
15149789 TCGAATCTTTGGCCTTATAACATTTATATTTTTTACTTTTAATTTTCTTGTGACTTATGGTTTT
65 TCAAACCTTTGATTTTGTAACATTTATATTTTTTACTTTTGATTTTCTTGTGATTTATGGTTTT
15149853 CCATCCCTTT
Statistics
Matches: 286, Mismatches: 44, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
206 2 0.01
207 100 0.35
208 81 0.28
209 2 0.01
211 41 0.14
212 56 0.20
213 4 0.01
ACGTcount: A:0.24, C:0.11, G:0.10, T:0.55
Consensus pattern (207 bp):
ATTATCGACTTTTGATTTTCTTGTATTCATTTTTTTAAAACCATTATTTGTTAAAATTTATTAAT
CAAACCTTTGATTTTGTAACATTTATATTTTTTACTTTTGATTTTCTTGTGATTTATGGTTTTAA
AGATGAGAGTTATATGAGTGTCTTTCATGTATATGTTACACTTTTTTCTCCCAATTATTATTTGT
CATATTACTTTA
Found at i:15152374 original size:58 final size:57
Alignment explanation
Indices: 15152217--15152374 Score: 201
Period size: 58 Copynumber: 2.8 Consensus size: 57
15152207 GCTTTTGTAT
** *
15152217 AAGAAAAATTGATACTTTCAACTTTTCCCCAAAATGTTTTTCTGAAACTTTAATTTC
1 AAGAAAAATTGATACTTTCAACTTTTCCTAAAAATGTTTTTTTGAAACTTTAATTTC
* ** * *
15152274 CAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATAATTTTTAGAAAAC-TTATTTTC
1 AAGAAAAATTGATACTTTCAACTTTTCCT-AAAAATGTTTTTTTG-AAACTTTAATTTC
* *
15152332 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAATGTTTTTTT
1 AAGAAAAATTGATACTTTCAACTTTTCCTAAAAATGTTTTTTT
15152375 TTTATTTTAT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
57 37 0.44
58 44 0.52
59 4 0.05
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.42
Consensus pattern (57 bp):
AAGAAAAATTGATACTTTCAACTTTTCCTAAAAATGTTTTTTTGAAACTTTAATTTC
Found at i:15152414 original size:5 final size:5
Alignment explanation
Indices: 15152404--15152430 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
15152394 ATCATTTAAA
15152404 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
15152431 TGAATACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:15152896 original size:20 final size:21
Alignment explanation
Indices: 15152864--15152918 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
15152854 TGAAAAACTT
15152864 GTCGAAAAA-TTCAAGG-TTC
1 GTCGAAAAATTTCAAGGATTC
*
15152883 GTCGAAAAATTTCACCGGATTC
1 GTCGAAAAATTTCA-AGGATTC
*
15152905 -TGGAAAAATTTCAA
1 GTCGAAAAATTTCAA
15152919 AAATTTTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 9 0.30
20 4 0.13
21 14 0.47
22 3 0.10
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (21 bp):
GTCGAAAAATTTCAAGGATTC
Found at i:15153246 original size:13 final size:13
Alignment explanation
Indices: 15153228--15153252 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15153218 ATAAATAATA
15153228 AATAAAATATATC
1 AATAAAATATATC
15153241 AATAAAATATAT
1 AATAAAATATAT
15153253 ATATTAATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
AATAAAATATATC
Found at i:15153317 original size:48 final size:43
Alignment explanation
Indices: 15153212--15153334 Score: 140
Period size: 48 Copynumber: 2.7 Consensus size: 43
15153202 AAGAAAAAAA
* *
15153212 TAATAGATAAATAATAAATAA-AATATATCAATAAAATATATATAT
1 TAATAGATAAATAAT-AATAATATTA-AT-AATAAAATATATACAT
15153257 TAATAGATAAATAATAGATAATAGTTAATAATAAAAATTTATATACAT
1 TAATAGATAAATAATA-ATAATA-TTAATAAT-AAAA--TATATACAT
15153305 TAATAGATAAATAATAATATATATTAATAA
1 TAATAGATAAATAATAATA-ATATTAATAA
15153335 ATGAATATAT
Statistics
Matches: 69, Mismatches: 2, Indels: 12
0.83 0.02 0.14
Matches are distributed among these distances:
44 1 0.01
45 22 0.32
46 7 0.10
47 12 0.17
48 27 0.39
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (43 bp):
TAATAGATAAATAATAATAATATTAATAATAAAATATATACAT
Found at i:15153846 original size:3 final size:3
Alignment explanation
Indices: 15153838--15153869 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
15153828 ACATTAGATT
15153838 TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15153870 AATCAACAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:15159797 original size:37 final size:38
Alignment explanation
Indices: 15159746--15159825 Score: 119
Period size: 37 Copynumber: 2.1 Consensus size: 38
15159736 CAGGGGCATT
15159746 AGAAAAGACAGATGCCATTAGGAAAGAAAGTGAAA-GCA
1 AGAAAAGACAGATGCCATTAGGAAAGAAA-TGAAAGGCA
* *
15159784 AGAAAA-AGAGATGCCATTAGGAAAGAAATTAAAGGCA
1 AGAAAAGACAGATGCCATTAGGAAAGAAATGAAAGGCA
15159821 AGAAA
1 AGAAA
15159826 GAGTTGCTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
36 4 0.10
37 29 0.74
38 6 0.15
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.11
Consensus pattern (38 bp):
AGAAAAGACAGATGCCATTAGGAAAGAAATGAAAGGCA
Found at i:15160715 original size:59 final size:58
Alignment explanation
Indices: 15160629--15160969 Score: 363
Period size: 59 Copynumber: 5.7 Consensus size: 58
15160619 TAATTTCAAG
*
15160629 AAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAA-TTT
1 AAAAAAAA-AGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT
* * * *
15160686 AAAAAAAAACGGTTTTTGAAGG-AAGGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTTT
1 AAAAAAAAA--GTTTTTG-AGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTT
* *
15160747 CAAAAAAAATA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTT
1 -AAAAAAAA-AGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT
*
15160806 -CAAAAAAAGTTTTTGAGGGAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
1 AAAAAAAAAGTTTTT----G-AGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTT
* * * *
15160869 AAAAAATAAA-TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAAGTTTC
1 AAAAAA-AAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTT
* * *
15160928 AAAAGAATA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
15160970 CTGCACGAGA
Statistics
Matches: 242, Mismatches: 24, Indels: 35
0.80 0.08 0.12
Matches are distributed among these distances:
56 2 0.01
57 19 0.08
58 33 0.14
59 84 0.35
60 39 0.16
61 4 0.02
62 44 0.18
63 5 0.02
64 9 0.04
65 3 0.01
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (58 bp):
AAAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT
Found at i:15160759 original size:119 final size:118
Alignment explanation
Indices: 15160629--15160971 Score: 428
Period size: 119 Copynumber: 2.9 Consensus size: 118
15160619 TAATTTCAAG
15160629 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTAAAAAAAA
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTAAAAAAAA
* *
15160694 ACGGTTTTT-GAAGG-AAGGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTTTC
66 A--GTTTTTGGAAGGAAAAGTTGAAAGTATCAATTTCCCTCAAAAATAAA-TTTTC
* **
15160748 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAA
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTAAAAAAAA
* * *
15160813 AGTTTTTGAGGGAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
66 AGTTTTT---GGAAGGAAAAGTTGAAAGTATCAATTTCCCTCAAAAATAAATTTTC
* * * * *
15160869 AAAAAATAA-ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAAGTTTCAAAAG
1 AAAAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAA-TTT-AAAAA
*
15160933 AATA-TTTTTGG--GGAAAAGTTGAAAGTATCAATTTTCCCT
63 AAAAGTTTTTGGAAGGAAAAGTTGAAAGTATCAA-TTTCCCT
15160972 GCACGAGAAT
Statistics
Matches: 197, Mismatches: 18, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
117 26 0.13
118 6 0.03
119 65 0.33
121 55 0.28
122 40 0.20
123 5 0.03
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (118 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTAAAAAAAA
AGTTTTTGGAAGGAAAAGTTGAAAGTATCAATTTCCCTCAAAAATAAATTTTC
Found at i:15160890 original size:16 final size:15
Alignment explanation
Indices: 15160855--15160883 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15160845 AATTTTCCTT
15160855 AAAAATAAATTTTTA
1 AAAAATAAATTTTTA
15160870 AAAAATAAATTTTT
1 AAAAATAAATTTTT
15160884 GAGAAAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAAATAAATTTTTA
Found at i:15161013 original size:6 final size:6
Alignment explanation
Indices: 15161002--15161028 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15160992 TTCTTTCTTT
15161002 TTTTTA TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTT
15161029 ATTTTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:15162109 original size:21 final size:21
Alignment explanation
Indices: 15162085--15162136 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
15162075 TTCATATTAG
15162085 ATTTCATTCAGGAAAATGTAC
1 ATTTCATTCAGGAAAATGTAC
15162106 ATTTCATTCAGGAAAATGTAC
1 ATTTCATTCAGGAAAATGTAC
15162127 ATTTCATTCA
1 ATTTCATTCA
15162137 TGCGTCAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (21 bp):
ATTTCATTCAGGAAAATGTAC
Found at i:15164240 original size:21 final size:21
Alignment explanation
Indices: 15164216--15164255 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15164206 AGAAGATGAT
15164216 GAAAAAAAAAAGAAAAAAAAA
1 GAAAAAAAAAAGAAAAAAAAA
* *
15164237 GAAAAAAAGAAGGAAAAAA
1 GAAAAAAAAAAGAAAAAAA
15164256 TGAGAAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (21 bp):
GAAAAAAAAAAGAAAAAAAAA
Found at i:15164273 original size:10 final size:10
Alignment explanation
Indices: 15164218--15164255 Score: 58
Period size: 10 Copynumber: 3.6 Consensus size: 10
15164208 AAGATGATGA
15164218 AAAAAAAAAG
1 AAAAAAAAAG
15164228 AAAAAAAAAG
1 AAAAAAAAAG
15164238 AAAAAAAGAAGG
1 AAAAAAA-AA-G
15164250 AAAAAA
1 AAAAAA
15164256 TGAGAAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 17 0.65
11 2 0.08
12 7 0.27
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:15164273 original size:20 final size:19
Alignment explanation
Indices: 15164220--15164273 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
15164210 GATGATGAAA
15164220 AAAAAAAG-AAAAAAAAAG
1 AAAAAAAGAAAAAAAAAAG
* *
15164238 AAAAAAAGAAGGAAAAAATG
1 AAAAAAAGAA-AAAAAAAAG
* *
15164258 AGAAAATGAAAAAAAA
1 AAAAAAAGAAAAAAAA
15164274 GATATTCAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 8 0.28
19 6 0.21
20 15 0.52
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (19 bp):
AAAAAAAGAAAAAAAAAAG
Found at i:15166138 original size:41 final size:41
Alignment explanation
Indices: 15166087--15166543 Score: 571
Period size: 41 Copynumber: 11.1 Consensus size: 41
15166077 ATGTTTGTTA
*
15166087 AGGAGTAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
15166128 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
15166169 AGGAGCAATTTACTTTCTTCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTC--CAAAGTCGTGGTGCCTCTGTTTAG
*
15166212 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
15166253 AGGAGCAATTTACTTT------TC----T--CTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
15166282 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAG
15166324 AGGAGCAATTTACTTT-CAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
15166364 AGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGG
1 AGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTT--A-G
*
15166409 AGCAAAGAGCAATTTACTTTCTCAAATTCGTGGTGCCTCTGTTTAG
1 AG----GAGCAATTTACTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
* * *
15166455 AGGAACATTTTACTTTCCCAAAGTCGTGATGCCTCTGTTTAG
1 AGGAGCAATTTACTTT-CCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
15166497 AGGAGCAATTTATTTTCTAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
15166538 AAGAGC
1 AGGAGC
15166544 TTTGATAAAA
Statistics
Matches: 367, Mismatches: 23, Indels: 52
0.83 0.05 0.12
Matches are distributed among these distances:
29 23 0.06
30 3 0.01
31 1 0.00
35 2 0.01
36 2 0.01
40 38 0.10
41 125 0.34
42 91 0.25
43 39 0.11
44 1 0.00
45 3 0.01
46 3 0.01
47 1 0.00
48 4 0.01
49 31 0.08
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:15166210 original size:84 final size:82
Alignment explanation
Indices: 15166087--15166543 Score: 526
Period size: 84 Copynumber: 5.6 Consensus size: 82
15166077 ATGTTTGTTA
* *
15166087 AGGAGTAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTC
1 AGGAGCAATTTACTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTC
15166152 GTGGTGCCTCTATTTAG
66 GTGGTGCCTCTATTTAG
15166169 AGGAGCAATTTACTTTCTTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG
1 AGGAGCAATTTACTTTC--CAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG
*
15166234 TCGTGGTGCCTCTGTTTAG
64 TCGTGGTGCCTCTATTTAG
15166253 AGGAGCAATTTACTTT------TC----T--CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGT
1 AGGAGCAATTTACTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGT
*
15166306 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTATTTAG
*
15166324 AGGAGCAATTTACTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGT
1 AGGAGCAATTTACTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGT
* *
15166388 CGTGGTACCTCTGTTTAGAGG
65 CGTGGTGCCTCTATTT--A-G
* * * * *
15166409 AGCAAAGAGCAATTTACTTTCTCAAATTCGTGGTGCCTCTGTTTAGAGGAACATTTTACTTTCCC
1 AG----GAGCAATTTACTTTC-CAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTT-TC
* *
15166474 AAAGTCGTGATGCCTCTGTTTAG
60 AAAGTCGTGGTGCCTCTATTTAG
* * * * * *
15166497 AGGAGCAATTTATTTTCTAAAGTCGTTGAGCCTCTGTTTAGAAGAGC
1 AGGAGCAATTTACTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGC
15166544 TTTGATAAAA
Statistics
Matches: 334, Mismatches: 17, Indels: 47
0.84 0.04 0.12
Matches are distributed among these distances:
70 27 0.08
71 40 0.12
72 1 0.00
76 4 0.01
80 1 0.00
82 65 0.19
83 24 0.07
84 94 0.28
85 3 0.01
88 3 0.01
89 15 0.04
91 57 0.17
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (82 bp):
AGGAGCAATTTACTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTC
GTGGTGCCTCTATTTAG
Found at i:15166275 original size:29 final size:29
Alignment explanation
Indices: 15166243--15166299 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
15166233 GTCGTGGTGC
15166243 CTCTGTTTAGAGGAGCAATTTACTTTTCT
1 CTCTGTTTAGAGGAGCAATTTACTTTTCT
15166272 CTCTGTTTAGAGGAGCAATTTACTTTTC
1 CTCTGTTTAGAGGAGCAATTTACTTTTC
15166300 CAAAGTCGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.44
Consensus pattern (29 bp):
CTCTGTTTAGAGGAGCAATTTACTTTTCT
Found at i:15166331 original size:42 final size:42
Alignment explanation
Indices: 15166272--15166543 Score: 354
Period size: 42 Copynumber: 6.4 Consensus size: 42
15166262 TTACTTTTCT
15166272 CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGC
1 CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGC
15166314 CTCTGTTTAGAGGAGCAATTTAC-TTT-CAAAGTCGTGGTGC
1 CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGC
*
15166354 CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTAC
1 CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGC
*
15166396 CTCTGTTTAGAGGAGCAAAGAGCAATTTAC-TTTCTCAAATTCGTGGTGC
1 CTCTGTTT--A-GAG----GAGCAATTTACTTTTC-CAAAGTCGTGGTGC
* * * *
15166445 CTCTGTTTAGAGGAACATTTTACTTTCCCAAAGTCGTGATGC
1 CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGC
* * *
15166487 CTCTGTTTAGAGGAGCAATTTA-TTTTCTAAAGTCGTTGAGC
1 CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGC
*
15166528 CTCTGTTTAGAAGAGC
1 CTCTGTTTAGAGGAGC
15166544 TTTGATAAAA
Statistics
Matches: 203, Mismatches: 16, Indels: 23
0.84 0.07 0.10
Matches are distributed among these distances:
40 37 0.18
41 35 0.17
42 85 0.42
43 3 0.01
44 1 0.00
45 3 0.01
46 3 0.01
47 1 0.00
48 4 0.02
49 31 0.15
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (42 bp):
CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGC
Found at i:15166479 original size:91 final size:89
Alignment explanation
Indices: 15166326--15166504 Score: 286
Period size: 91 Copynumber: 2.0 Consensus size: 89
15166316 CTGTTTAGAG
* *
15166326 GAGCAATTTACTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGT
1 GAGCAATTTACTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAACAATTTACTTTCCCAAAGTCGT
*
15166391 GGTACCTCTGTTTAGAGGAGCAAA
66 GATACCTCTGTTTAGAGGAGCAAA
* *
15166415 GAGCAATTTACTTTCTCAAATTCGTGGTGCCTCTGTTTAGAGGAACATTTTACTTTCCCAAAGTC
1 GAGCAATTTAC-TT-TCAAAGTCGTGGTGCCTCTGTTTAGAGGAACAATTTACTTTCCCAAAGTC
*
15166480 GTGATGCCTCTGTTTAGAGGAGCAA
64 GTGATACCTCTGTTTAGAGGAGCAA
15166505 TTTATTTTCT
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
89 11 0.13
90 2 0.02
91 69 0.84
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (89 bp):
GAGCAATTTACTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAACAATTTACTTTCCCAAAGTCGT
GATACCTCTGTTTAGAGGAGCAAA
Found at i:15166571 original size:14 final size:13
Alignment explanation
Indices: 15166550--15166595 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
15166540 GAGCTTTGAT
15166550 AAAAAAAAAACAA
1 AAAAAAAAAACAA
*
15166563 AACAAAAAAAATAA
1 AA-AAAAAAAACAA
*
15166577 AAAATAAAAACAA
1 AAAAAAAAAACAA
15166590 AAAAAA
1 AAAAAA
15166596 GGGTTGCCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.89, C:0.07, G:0.00, T:0.04
Consensus pattern (13 bp):
AAAAAAAAAACAA
Found at i:15166586 original size:22 final size:23
Alignment explanation
Indices: 15166552--15166595 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
15166542 GCTTTGATAA
15166552 AAAAAAAACAAAACAAAAAAAAT
1 AAAAAAAACAAAACAAAAAAAAT
*
15166575 AAAAAATA-AAAACAAAAAAAA
1 AAAAAAAACAAAACAAAAAAAA
15166596 GGGTTGCCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.89, C:0.07, G:0.00, T:0.05
Consensus pattern (23 bp):
AAAAAAAACAAAACAAAAAAAAT
Found at i:15166695 original size:12 final size:12
Alignment explanation
Indices: 15166678--15166725 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
15166668 ATCATTTTAA
15166678 AAAAAAAAAAAC
1 AAAAAAAAAAAC
* *
15166690 AAAAAAATAGAC
1 AAAAAAAAAAAC
15166702 AAAAAAAAACAA-
1 AAAAAAAAA-AAC
15166714 AAACAAAAAAAA
1 AAA-AAAAAAAA
15166726 AGTTGCTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
12 23 0.77
13 7 0.23
ACGTcount: A:0.88, C:0.08, G:0.02, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:15166706 original size:120 final size:123
Alignment explanation
Indices: 15166484--15166829 Score: 379
Period size: 129 Copynumber: 2.8 Consensus size: 123
15166474 AAAGTCGTGA
* ** * * *
15166484 TGCCTCTGTTTAGAGGAGC--AATTTAT-TTTCT-AAAGTCGTTGAGCCTCTGTTTAGAAGAGCT
1 TGCCTCTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCT
* *
15166545 TTGAT-A---AAAAAAAAACAAAACAAAAAAAATAAAA-AATAAA-AACAAAAAAAAGGGT
66 TTGATCATTTAAAAAAAAA-AAAAC-AAAAAAATAAAACAAAAAACAACAAAAAAAA-AGT
15166600 TGCCTCTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCT
1 TGCCTCTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCT
*
15166665 TTGATCATTTTAAAAAAAAAAAAACAAAAAAATAGACAAAAAAAAACAAAAACAAAAAAAAAGT
66 TTGATCA-TTTAAAAAAAAAAAAACAAAAAAATA-A-AACAAAAAAC---AACAAAAAAAAAGT
* * * *
15166729 TGCTTCTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAATCATTGAGCTTCTACTTAGAGGAGCT
1 TGCCTCTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCT
15166794 TTGATCAAAATTTAAAAAAAAAAAGAAGCAAAAAAA
66 TTGATC---ATTTAAAAAAAAAAA-AA-CAAAAAAA
15166830 ATGGGCAAAA
Statistics
Matches: 197, Mismatches: 12, Indels: 25
0.84 0.05 0.11
Matches are distributed among these distances:
116 18 0.09
118 5 0.03
119 5 0.03
120 32 0.16
121 1 0.01
123 9 0.05
124 6 0.03
125 11 0.06
126 5 0.03
129 69 0.35
130 11 0.06
131 14 0.07
132 3 0.02
133 8 0.04
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (123 bp):
TGCCTCTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCT
TTGATCATTTAAAAAAAAAAAAACAAAAAAATAAAACAAAAAACAACAAAAAAAAAGT
Found at i:15166709 original size:16 final size:16
Alignment explanation
Indices: 15166677--15166726 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
15166667 GATCATTTTA
* *
15166677 AAAAAAAAAAAACAAAA
1 AAAAACAAAAAA-AAAC
15166694 AAATAGACAAAAAAAAAC
1 AAA-A-ACAAAAAAAAAC
15166712 AAAAACAAAAAAAAA
1 AAAAACAAAAAAAAA
15166727 GTTGCTTCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 11 0.38
17 4 0.14
18 7 0.24
19 7 0.24
ACGTcount: A:0.88, C:0.08, G:0.02, T:0.02
Consensus pattern (16 bp):
AAAAACAAAAAAAAAC
Found at i:15166731 original size:129 final size:131
Alignment explanation
Indices: 15166550--15166849 Score: 421
Period size: 129 Copynumber: 2.3 Consensus size: 131
15166540 GAGCTTTGAT
* *
15166550 AAAAAAAAAACAAAACAAA-A-A-AAATAAAAAATAAAAACAAAAAAAAGGGTTGCCTCTATTTA
1 AAAAAAAAAACAAAA-AAATAGACAAA-AAAAAACAAAAACAAAAAAAAGAGTTGCCTCTATTTA
* * *
15166612 GAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTGATC-ATTTT
64 GAGGAGCTTTGTTTATGTTTCTCAAAATCATTGAGCCTCTACTTAGAGGAGCTTTGATCAAATTT
15166676 AAA
129 AAA
*
15166679 AAAAAAAAAACAAAAAAATAGACAAAAAAAAACAAAAACAAAAAAAA-AGTTGCTTCTATTTAGA
1 AAAAAAAAAACAAAAAAATAGACAAAAAAAAACAAAAACAAAAAAAAGAGTTGCCTCTATTTAGA
*
15166743 GGAGCTTTGTTTATGTTTCTCAAAATCATTGAGCTTCTACTTAGAGGAGCTTTGATCAAAATTTA
66 GGAGCTTTGTTTATGTTTCTCAAAATCATTGAGCCTCTACTTAGAGGAGCTTTGATC-AAATTTA
15166808 AA
130 AA
* *
15166810 AAAAAAAAGAAGCAAAAAAAATGGGCAAAAAAAAATCAAA
1 AAAAAAAA-AA-C-AAAAAAATAGACAAAAAAAAA-CAAA
15166850 TCAGTTGAGT
Statistics
Matches: 153, Mismatches: 9, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
128 3 0.02
129 85 0.56
130 21 0.14
131 18 0.12
132 2 0.01
133 1 0.01
134 19 0.12
135 4 0.03
ACGTcount: A:0.51, C:0.11, G:0.13, T:0.24
Consensus pattern (131 bp):
AAAAAAAAAACAAAAAAATAGACAAAAAAAAACAAAAACAAAAAAAAGAGTTGCCTCTATTTAGA
GGAGCTTTGTTTATGTTTCTCAAAATCATTGAGCCTCTACTTAGAGGAGCTTTGATCAAATTTAA
A
Found at i:15168205 original size:37 final size:38
Alignment explanation
Indices: 15168154--15168233 Score: 126
Period size: 37 Copynumber: 2.1 Consensus size: 38
15168144 TAGGGGCATT
15168154 AGAAAAGACAGATGCCATTAGGAAAGAAAGTGAAAGCA
1 AGAAAAGACAGATGCCATTAGGAAAGAAAGTGAAAGCA
* * *
15168192 AGAAAA-AGAGATGCCATTAGGAAAGAAATTGAAGGCA
1 AGAAAAGACAGATGCCATTAGGAAAGAAAGTGAAAGCA
15168229 AGAAA
1 AGAAA
15168234 GAGTTGCTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 33 0.85
38 6 0.15
ACGTcount: A:0.54, C:0.09, G:0.26, T:0.11
Consensus pattern (38 bp):
AGAAAAGACAGATGCCATTAGGAAAGAAAGTGAAAGCA
Found at i:15169298 original size:59 final size:58
Alignment explanation
Indices: 15169038--15169546 Score: 512
Period size: 59 Copynumber: 8.7 Consensus size: 58
15169028 AATTTCAAGA
* * **
15169038 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAATTT--CC
* * ** * *
15169098 AAAAAAACGATTTTTGAAGG-AAAGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTGCC
1 AAAAAAA-TATTTTTG-GGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAA-TTTCC
* * * *
15169158 AAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 -AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAATTTCC
* * * * *
15169217 --AAAAATGGTTTTTGAGGG-AAAGTTGAAAGTATCTATTTCTCTCGAAATTAAAGTTTCC
1 AAAAAAAT-ATTTTTG-GGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAA-TTTCC
* * * *
15169275 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAATTTCC
** * *
15169333 -AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAAGTTTCC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAAT-AAA-TTTCC
* ** * *
15169392 -AAAGAATATTTTTGGGGAAAAGTCAAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAATTTCC
* * * *
15169449 AAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTT-C
1 AAAAAA-ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAA-TTTCC
*
15169508 AAAAGAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
15169547 CCCTACATAA
Statistics
Matches: 371, Mismatches: 62, Indels: 35
0.79 0.13 0.07
Matches are distributed among these distances:
56 6 0.02
57 104 0.28
58 30 0.08
59 128 0.35
60 54 0.15
61 44 0.12
62 5 0.01
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (58 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAATTTCC
Found at i:15169338 original size:117 final size:117
Alignment explanation
Indices: 15169038--15169548 Score: 710
Period size: 116 Copynumber: 4.4 Consensus size: 117
15169028 AATTTCAAGA
* * **
15169038 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTAAAAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT---TCAAAA
* * * *
15169103 AACGATTTTTGAAGG-AAAGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTGCC
63 AATGATTTTTG-AGGAAAAGTTGAAAGTATCAATTTCTCTCGAAATTAAAGTTTCC
*
15169158 AAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAAAA
1 -AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
* * *
15169222 TGGTTTTTGAGGGAAAGTTGAAAGTATCTATTTCTCTCGAAATTAAAGTTTCC
65 TGATTTTTGAGGAAAAGTTGAAAGTATCAATTTCTCTCGAAATTAAAGTTTCC
*
15169275 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAATTTTCAAAAAA-
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAT
* * *
15169339 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAAGTTTCC
66 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTCTCTCG-AAATTAAAGTTTCC
* ** *
15169392 -AAAGAATATTTTTGGGGAAAAGTCAAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAT
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAT
* *
15169456 AAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTT-C
66 -GATTTTTGAGGAAAAGTTGAAAGTATCAATTTCTCTCGAAATTAAAGTTTCC
*
15169508 AAAAGAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
15169549 CTACATAAGA
Statistics
Matches: 356, Mismatches: 28, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
116 177 0.50
117 90 0.25
118 36 0.10
121 53 0.15
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.35
Consensus pattern (117 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAT
GATTTTTGAGGAAAAGTTGAAAGTATCAATTTCTCTCGAAATTAAAGTTTCC
Found at i:15169463 original size:16 final size:17
Alignment explanation
Indices: 15169425--15169463 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
15169415 CAAAAGTATC
*
15169425 AATTTTTCTTAAAAATA
1 AATTTTTCTAAAAAATA
15169442 AA-TTTTC-AAAAAATA
1 AATTTTTCTAAAAAATA
15169457 AATTTTT
1 AATTTTT
15169464 GAGGAAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 9 0.45
16 9 0.45
17 2 0.10
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTTTTCTAAAAAATA
Found at i:15169613 original size:13 final size:12
Alignment explanation
Indices: 15169578--15169606 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
15169568 CTTTTCTTTC
15169578 TTTTTCTATTTA
1 TTTTTCTATTTA
15169590 TTTTTCTATTTA
1 TTTTTCTATTTA
15169602 TTTTT
1 TTTTT
15169607 TTTATTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTCTATTTA
Found at i:15171319 original size:58 final size:58
Alignment explanation
Indices: 15171224--15171746 Score: 569
Period size: 58 Copynumber: 9.0 Consensus size: 58
15171214 AAAAAATATA
* * * * * *
15171224 AAATAAAATTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAGAGTATCAATTTTCCTTG
1 AAATTAAAGTTTCCAAAAAAA-GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
* * * *
15171283 AAAAT-AAGCTTTCCAAAAAAAGATTTTGAGGAAAAGTTGAAATTATCAATTTT-TTTCG
1 AAATTAAAG-TTTCCAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-G
* * *
15171341 AAATTAAAGATTCCAAAAAATA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCG
1 AAATTAAAGTTTCCAAAAAA-AGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
* * *
15171399 AAATTAAGGTTTCCAAAAAATA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAATTAAAGTTTCCAAAAAA-AGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
* * ** * *
15171457 AAAATAAATTTTTTAAAAAAAAGTTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTCG
1 AAATTAAA-GTTTCCAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
* * * *
15171516 AATTTAAAGTTTCAAAAAAAAGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCG
1 AAATTAAAGTTTCCAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
* * * * * *
15171574 AAATTAAGGTTT-CAAAAAAATTATTTTTGGGGAAAAATTGAAAATATCAATTTTCCTTA
1 AAATTAAAGTTTCCAAAAAAA--GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
* * * *
15171633 AAAATAAA-TTTTCAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCG
1 AAATTAAAGTTTCCAAAAAAA-GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
15171691 AAATTAAAGTTT-C-AAAAAA-TATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAATTAAAGTTTCCAAAAAAAGT-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
15171747 CACAAAAACA
Statistics
Matches: 393, Mismatches: 59, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
55 1 0.00
56 33 0.08
57 15 0.04
58 231 0.59
59 113 0.29
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (58 bp):
AAATTAAAGTTTCCAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:15171483 original size:14 final size:15
Alignment explanation
Indices: 15171454--15171486 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
15171444 TCAATTTTCC
*
15171454 TTAAAAATAAATTTT
1 TTAAAAATAAAGTTT
15171469 TTAAAAA-AAAGTTT
1 TTAAAAATAAAGTTT
15171483 TTAA
1 TTAA
15171487 GGAAAAGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
TTAAAAATAAAGTTT
Found at i:15171515 original size:117 final size:116
Alignment explanation
Indices: 15171223--15171744 Score: 581
Period size: 117 Copynumber: 4.5 Consensus size: 116
15171213 AAAAAAATAT
** * * *
15171223 AAAATAAAATTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAGAGTATCAATTTTCCTTGAAAAT
1 AAAATAAAGGTTTC-AAAAAAA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAAT
* * *
15171288 -AAGCTTTCCAAAAAAAGATTTTGAGGAAAAGTTGAAATTATCAATTTT-TTTCG
64 AAAG-TTTCCAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-G
* * * * * *
15171341 AAATTAAAGATTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAA
1 AAAATAAAGGTTTCAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAA
* * *
15171406 GGTTTCCAAAAAATA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTA
66 AGTTTCCAAAAAA-AGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
** * * **
15171457 AAAATAAATTTTTTAAAAAAAAGTTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTCGAATTTA
1 AAAATAAAGGTTTCAAAAAAAA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATA
* * *
15171522 AAGTTTCAAAAAAAAGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCG
65 AAGTTTCCAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
* * * * **
15171574 -AAATTAAGGTTTCAAAAAAATTATTTTTGGGGAAAAATTGAAAATATCAATTTTCCTTAAAAAT
1 AAAATAAAGGTTTCAAAAAAA--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAAT
* * *
15171638 AAA-TTTTCAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCG
64 AAAGTTTCCAAAAAAA-GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
* *
15171691 AAATTAAA-GTTTCAAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 AAAATAAAGGTTTCAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
15171745 TGCACAAAAA
Statistics
Matches: 342, Mismatches: 53, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
114 30 0.09
115 1 0.00
116 119 0.35
117 176 0.51
118 16 0.05
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (116 bp):
AAAATAAAGGTTTCAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAA
AGTTTCCAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:15171575 original size:175 final size:173
Alignment explanation
Indices: 15171233--15171744 Score: 774
Period size: 175 Copynumber: 2.9 Consensus size: 173
15171223 AAAATAAAAT
** * * ** *
15171233 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAGAGTATCAATTTTCCTTGAAAATAAGCTTTCCA
1 TTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAA
* * * *
15171298 AAAAAAGATTTTGAGGAAAAGTTGAAATTATCAATTTTTTTCGAAATTAAAGATTCCAAAAAATA
65 AAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAG-TTTCAAAAAATA
*
15171363 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAGG
129 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAGG
* *
15171408 TTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTTTAA
1 TTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTCAA
* * * *
15171473 AAAAAAGTTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTCGAATTTAAAGTTTCAAAAAAAAG
65 AAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCAAAAAATA-
*
15171538 TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAGG
129 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAGG
* *
15171583 TTTCAAAAAAATTATTTTTGGGGAAAAATTGAAAATATCAATTTTCCTTAAAAATAAATTTTCAA
1 TTTCAAAAAAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAA
*
15171648 AAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCAAAAAATA-
65 AAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCAAAAAATAT
15171712 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
130 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
15171745 TGCACAAAAA
Statistics
Matches: 305, Mismatches: 29, Indels: 8
0.89 0.08 0.02
Matches are distributed among these distances:
173 32 0.10
174 57 0.19
175 172 0.56
176 44 0.14
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (173 bp):
TTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
AAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCAAAAAATATT
TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAGG
Found at i:15173413 original size:632 final size:631
Alignment explanation
Indices: 15172209--15173578 Score: 2623
Period size: 632 Copynumber: 2.2 Consensus size: 631
15172199 CGTTATGACA
15172209 TATGATATTGCTCATTGACTAATATTGCATTTTGTCTTGAATAGTGACTTATACTGTCAATAACA
1 TATGATATTGCTCATTGACTAATATTGCATTTTGTCTTGAATAGTGACTTATACTGTCAATAACA
15172274 ATCAAGCTACTATCGAAGAACTTTGTGGGTTTAATTATAAGATAACAATCAAGTTTAAATGTAAT
66 ATCAAGCTACTATCGAAGAACTTTGTGGGTTTAATTATAAGATAACAATCAAGTTTAAATGTAAT
*
15172339 AAACATTGTTTATAGTACCTAATAAGATAAATCAAGGTTTAGTATCTCAGCTAGAATGGTTCATT
131 AAACATTGTTTATAGTACCTAATAAGATAAATCAAGGTTTAGTATCTCAGCAAGAATGGTTCATT
*
15172404 GCATACATTAAGGTTGAATATGCAAATTGAGAATTTTGGCAATTAATGAAAATTTTCAATTTGAA
196 GCATACATTAAGGTTGAATATGCAAACTGAGAATTTTGGCAATTAATGAAAATTTTCAATTTGAA
15172469 AAAGTTTTCATTAATTGATATAAGTGTTTGGTTTCCAAAGTGGCTCACTTATTGAAGTTAATGGA
261 AAAGTTTTCATTAATTGATATAAGTGTTTGGTTTCCAAAGTGGCTCACTTATTGAAGTTAATGGA
*
15172534 ATATTTTATCATTCTAAAGTTATGGGATGGTTATTAAATTATCTTATGTATTTTCATGCCCAAAG
326 ATATTTTATCATTCTAAAGTTATGGGATGGTTATTAAATTATCTTATGTATTTTCATACCCAAAG
*
15172599 GGAGTTAATGTGTAGGGTAATTTGTTTTGGATCATAGAGCATCATGGTTGAGGGTGTATTGGTCT
391 GGAGTTAATGTGTAGGGCAATTTGTTTTGGATCATAGAGCATCATGGTTGAGGGTGTATTGGTCT
15172664 AGAAAATCAATCTACCTAAAGGGGATAGGTTTTTGAAAACTAGGACATTCTCATATTAGCTTTAT
456 AGAAAATCAATCTACCTAAAGGGGATAGGTTTTTGAAAACTAGGACATTCTCATATTAGCTTTAT
*
15172729 GTGAAAAGTTCCTAATCACATGTTGCATTCTCTGCCCAAAGAGGAGTTTATGATAATGCACTTGG
521 ATGAAAAGTTCCTAATCACATGTTGCATTCTCTGCCCAAAGAGGAGTTTATGATAATGCACTTGG
15172794 ATCTTTTAGTAATTGTTAGCACATCATGAATAGTTACTATACAATT
586 ATCTTTTAGTAATTGTTAGCACATCATGAATAGTTACTATACAATT
*
15172840 TATGATATTGTTCATTGACTAATATTGCATTTTGTCTTGAATAGTGACTTATACTGTCAATAACA
1 TATGATATTGCTCATTGACTAATATTGCATTTTGTCTTGAATAGTGACTTATACTGTCAATAACA
15172905 ATCAAGCTACTATCGAAGAACTTTGTGGGTTTAATTATAAGATAACAATCAAGTTTAAATGTAAT
66 ATCAAGCTACTATCGAAGAACTTTGTGGGTTTAATTATAAGATAACAATCAAGTTTAAATGTAAT
15172970 AAACATTGTTTATAGTACCTAATAAGATAAATCAAGGTTTAGTATCTCAGCAAGAATGGTTCATT
131 AAACATTGTTTATAGTACCTAATAAGATAAATCAAGGTTTAGTATCTCAGCAAGAATGGTTCATT
15173035 GCATACATTAAGGTTGAATATGCAAACTGAGAATTTTTGGCAATTAATGAAAATTTTCAATTTGA
196 GCATACATTAAGGTTGAATATGCAAACTGAGAA-TTTTGGCAATTAATGAAAATTTTCAATTTGA
*
15173100 AAAAGTTTTCATTTATTGATATAAGTGTTTGGTTTCCAAAGTGGCTCACTTATTGAAGTTAATGG
260 AAAAGTTTTCATTAATTGATATAAGTGTTTGGTTTCCAAAGTGGCTCACTTATTGAAGTTAATGG
* *
15173165 AATATTTTATCATTCTAAATTTATGGGATGGTTATTAAATTATCTTATGTATTTTCCTACCCAAA
325 AATATTTTATCATTCTAAAGTTATGGGATGGTTATTAAATTATCTTATGTATTTTCATACCCAAA
15173230 GGGAGTTAATGTGTAGGGCAATTTGTTTTGGATCATAGAGCATCATGGTTGAGGGTGTATTGGTC
390 GGGAGTTAATGTGTAGGGCAATTTGTTTTGGATCATAGAGCATCATGGTTGAGGGTGTATTGGTC
15173295 TAGAAAATCAATCTACCTAAAGGGGATAGGTTTTTGAAAACTAGGACATTCTCATATTAGCTTTA
455 TAGAAAATCAATCTACCTAAAGGGGATAGGTTTTTGAAAACTAGGACATTCTCATATTAGCTTTA
15173360 TATGAAAAGTTCCTAATCACATGTTGCATTCTCTGCCCAAAGAGGAGTTTATGATAATGCACTTG
520 TATGAAAAGTTCCTAATCACATGTTGCATTCTCTGCCCAAAGAGGAGTTTATGATAATGCACTTG
*
15173425 GATCTTTTAGTAATTGTTAGCACATCATGAATAGTTGCTATACAATT
585 GATCTTTTAGTAATTGTTAGCACATCATGAATAGTTACTATACAATT
*
15173472 TATGATATTGCTCATTGACTAATATTGCATTTTGTCTTGAATAGTGACTTATACTGTCCATAACA
1 TATGATATTGCTCATTGACTAATATTGCATTTTGTCTTGAATAGTGACTTATACTGTCAATAACA
*
15173537 ATCAAGCTACTATCGAAAAACTTTGTGGGTTTAATTATAAGA
66 ATCAAGCTACTATCGAAGAACTTTGTGGGTTTAATTATAAGA
15173579 GATGAAATGA
Statistics
Matches: 725, Mismatches: 13, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
631 225 0.31
632 500 0.69
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (631 bp):
TATGATATTGCTCATTGACTAATATTGCATTTTGTCTTGAATAGTGACTTATACTGTCAATAACA
ATCAAGCTACTATCGAAGAACTTTGTGGGTTTAATTATAAGATAACAATCAAGTTTAAATGTAAT
AAACATTGTTTATAGTACCTAATAAGATAAATCAAGGTTTAGTATCTCAGCAAGAATGGTTCATT
GCATACATTAAGGTTGAATATGCAAACTGAGAATTTTGGCAATTAATGAAAATTTTCAATTTGAA
AAAGTTTTCATTAATTGATATAAGTGTTTGGTTTCCAAAGTGGCTCACTTATTGAAGTTAATGGA
ATATTTTATCATTCTAAAGTTATGGGATGGTTATTAAATTATCTTATGTATTTTCATACCCAAAG
GGAGTTAATGTGTAGGGCAATTTGTTTTGGATCATAGAGCATCATGGTTGAGGGTGTATTGGTCT
AGAAAATCAATCTACCTAAAGGGGATAGGTTTTTGAAAACTAGGACATTCTCATATTAGCTTTAT
ATGAAAAGTTCCTAATCACATGTTGCATTCTCTGCCCAAAGAGGAGTTTATGATAATGCACTTGG
ATCTTTTAGTAATTGTTAGCACATCATGAATAGTTACTATACAATT
Found at i:15179941 original size:4 final size:4
Alignment explanation
Indices: 15179934--15179977 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
15179924 TATATATATG
* * * *
15179934 TACA TACA TAAA TACA TACA TACA TAAA AACA TACA TGCA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
15179978 AGGTTATATA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.55, C:0.20, G:0.02, T:0.23
Consensus pattern (4 bp):
TACA
Found at i:15179955 original size:16 final size:16
Alignment explanation
Indices: 15179934--15179975 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
15179924 TATATATATG
*
15179934 TACATACATAAATACA
1 TACATACATAAAAACA
15179950 TACATACATAAAAACA
1 TACATACATAAAAACA
*
15179966 TACATGCATA
1 TACATACATA
15179976 CAAGGTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.55, C:0.19, G:0.02, T:0.24
Consensus pattern (16 bp):
TACATACATAAAAACA
Found at i:15180717 original size:67 final size:66
Alignment explanation
Indices: 15180649--15180901 Score: 255
Period size: 67 Copynumber: 3.8 Consensus size: 66
15180639 CAATGATCAT
* * **
15180649 AATTAA-TATATAGATATTATTTTTAAAACTAAAGAAATTGAAAAGAAAAAGAAAGCAAAAAATA
1 AATTAATTA-ATAAATATTATTTTTAAAA-TAAAGAAAATGAAAAGGTAAAGAAAGCAAAAAATA
*
15180713 CAT
64 CAC
* * * * * * *
15180716 AATTTATTAATAAATTTTCTTTTTAAAATCGAAGAAAAAGAAAAGGTAAAGAAAGCCAAAGATAC
1 AATTAATTAATAAATATTATTTTTAAAAT-AAAGAAAATGAAAAGGTAAAGAAAGCAAAAAATAC
15180781 AC
65 AC
* *
15180783 AATTAATTAATAAATATTATTTTTAAAATAAA-AAAATAAAAAGGTAAAGAAAGCCAAGAAA-AC
1 AATTAATTAATAAATATTATTTTTAAAATAAAGAAAATGAAAAGGTAAAGAAAG-CAAAAAATAC
15180846 AC
65 AC
** * * *
15180848 AATTAA-TAGATAAATATTGCTTTTAAATTGAAGAAAA-CAAAAGGTAAAGAAAGC
1 AATTAATTA-ATAAATATTATTTTTAAAATAAAGAAAATGAAAAGGTAAAGAAAGC
15180902 CCAAGAAACC
Statistics
Matches: 155, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
64 3 0.02
65 63 0.41
66 11 0.07
67 76 0.49
68 2 0.01
ACGTcount: A:0.57, C:0.06, G:0.11, T:0.26
Consensus pattern (66 bp):
AATTAATTAATAAATATTATTTTTAAAATAAAGAAAATGAAAAGGTAAAGAAAGCAAAAAATACA
C
Found at i:15180848 original size:65 final size:65
Alignment explanation
Indices: 15180649--15180916 Score: 228
Period size: 65 Copynumber: 4.1 Consensus size: 65
15180639 CAATGATCAT
* * * ** *
15180649 AATTAATATATAGATATTATTTTTAAAACT-AAAGAAATTGAAAAGAAAAAGAAAG-CAAAAAAT
1 AATTAATAGATAAATATTATTTTTAAAA-TGAAA-AAA-AGAAAAGGTAAAGAAAGCCAAGAAA-
*
15180712 ACAT
62 ACAC
* * * *
15180716 AATTTATTA-ATAAATTTTCTTTTTAAAATCGAAGAAAAAGAAAAGGTAAAGAAAGCCAA-AGAT
1 AA-TTAATAGATAAATATTATTTTTAAAAT-GAA-AAAAAGAAAAGGTAAAGAAAGCCAAGA-AA
15180779 ACAC
62 ACAC
*
15180783 AATTAATTA-ATAAATATTATTTTTAAAAT-AAAAAAATAAAAAGGTAAAGAAAGCCAAGAAAAC
1 AATTAA-TAGATAAATATTATTTTTAAAATGAAAAAAA-GAAAAGGTAAAGAAAGCCAAGAAAAC
15180846 AC
64 AC
** * * *
15180848 AATTAATAGATAAATATTGCTTTTAAATTGAAGAAAACAAAAGGTAAAGAAAGCCCAAG-AAAC-
1 AATTAATAGATAAATATTATTTTTAAAATGAAAAAAAGAAAAGGTAAAGAAAG-CCAAGAAAACA
15180911 C
65 C
15180912 AATTA
1 AATTA
15180917 TCACAATTAA
Statistics
Matches: 170, Mismatches: 19, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
64 13 0.08
65 68 0.40
66 16 0.09
67 58 0.34
68 14 0.08
69 1 0.01
ACGTcount: A:0.57, C:0.07, G:0.10, T:0.25
Consensus pattern (65 bp):
AATTAATAGATAAATATTATTTTTAAAATGAAAAAAAGAAAAGGTAAAGAAAGCCAAGAAAACAC
Found at i:15182513 original size:22 final size:22
Alignment explanation
Indices: 15182472--15182525 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
15182462 ATTATCAATA
* *
15182472 ATTTACTAATATATTTTTATGC
1 ATTTACTACTATATTATTATGC
* **
15182494 ATTTACTACTATGTTATTATTT
1 ATTTACTACTATATTATTATGC
15182516 ATTTACTACT
1 ATTTACTACT
15182526 TAGTTTTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.56
Consensus pattern (22 bp):
ATTTACTACTATATTATTATGC
Found at i:15182825 original size:22 final size:22
Alignment explanation
Indices: 15182800--15182869 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 22
15182790 ACTGAAACTG
* * *
15182800 ATTTATTATTAAGTAATCATTT
1 ATTTATTACTAAGTTATCAATT
*
15182822 ATTTATTACTAAGTTATCAATG
1 ATTTATTACTAAGTTATCAATT
* * *
15182844 ATTAACTACTAAGTTATCACTT
1 ATTTATTACTAAGTTATCAATT
15182866 ATTT
1 ATTT
15182870 TTTATTAGGC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.36, C:0.10, G:0.06, T:0.49
Consensus pattern (22 bp):
ATTTATTACTAAGTTATCAATT
Found at i:15183210 original size:22 final size:22
Alignment explanation
Indices: 15183148--15183355 Score: 129
Period size: 22 Copynumber: 9.5 Consensus size: 22
15183138 GTGATTGATA
* *
15183148 ATTAAGTTATCATTGATTTACT
1 ATTAAATTATCAATGATTTACT
** * *
15183170 ACGATATTAT-AGTGATTTACT
1 ATTAAATTATCAATGATTTACT
* *
15183191 ATTAAGTTGTCAATGATTTACT
1 ATTAAATTATCAATGATTTACT
* *
15183213 AATAAATTATCCATGATTTAC-
1 ATTAAATTATCAATGATTTACT
* ** *
15183234 AGCTAGTTTATGAATGATTTA-T
1 A-TTAAATTATCAATGATTTACT
* *
15183256 CATTAAATTATAAATGATTTATT
1 -ATTAAATTATCAATGATTTACT
* *
15183279 ATTAAATTGTTAATGATTTACT
1 ATTAAATTATCAATGATTTACT
* * * *
15183301 ACTAAATTATTAATGGTTTATT
1 ATTAAATTATCAATGATTTACT
15183323 A-TAAAGTTAT-AACTGATTTACT
1 ATTAAA-TTATCAA-TGATTTACT
* *
15183345 ACTAATTTATC
1 ATTAAATTATC
15183356 GATTATTTGT
Statistics
Matches: 143, Mismatches: 34, Indels: 17
0.74 0.18 0.09
Matches are distributed among these distances:
21 22 0.15
22 116 0.81
23 5 0.03
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.46
Consensus pattern (22 bp):
ATTAAATTATCAATGATTTACT
Found at i:15183273 original size:66 final size:66
Alignment explanation
Indices: 15183154--15183355 Score: 169
Period size: 66 Copynumber: 3.1 Consensus size: 66
15183144 GATAATTAAG
* * * * * * *
15183154 TTATCATTGATTTACTACGATATTAT-AGTGATTTA-CTATTAAGTTGTCAATGATTTACTAATA
1 TTATCAATGATTTACTACTAAATTATGAATGATTTATC-ATAAAGTTATAAATGATTTACTAATA
15183217 AA
65 AA
* ** * *
15183219 TTATCCATGATTTAC-AGCTAGTTTATGAATGATTTATCATTAAA-TTATAAATGATTTATTATT
1 TTATCAATGATTTACTA-CTAAATTATGAATGATTTATCA-TAAAGTTATAAATGATTTACTAAT
15183282 AAA
64 AAA
* * * * * * *
15183285 TTGTTAATGATTTACTACTAAATTATTAATGGTTTATTATAAAGTTATAACTGATTTACTACTAA
1 TTATCAATGATTTACTACTAAATTATGAATGATTTATCATAAAGTTATAAATGATTTACTAATAA
*
15183350 T
66 A
15183351 TTATC
1 TTATC
15183356 GATTATTTGT
Statistics
Matches: 106, Mismatches: 25, Indels: 11
0.75 0.18 0.08
Matches are distributed among these distances:
64 1 0.01
65 23 0.22
66 77 0.73
67 5 0.05
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.46
Consensus pattern (66 bp):
TTATCAATGATTTACTACTAAATTATGAATGATTTATCATAAAGTTATAAATGATTTACTAATAA
A
Found at i:15183384 original size:44 final size:44
Alignment explanation
Indices: 15183151--15183376 Score: 142
Period size: 44 Copynumber: 5.2 Consensus size: 44
15183141 ATTGATAATT
* * * * * * *
15183151 AAGTTATCATTGATTTACTACGATATTAT-AGTGATTTACTATT
1 AAGTTATAACTGATTTACTACTAAATTATCAATGATTTATTATA
* * * * **
15183194 AAGTTGTCAA-TGATTTACTAATAAATTATCCATGATTTA-CAGC
1 AAGTTAT-AACTGATTTACTACTAAATTATCAATGATTTATTATA
* * *
15183237 TAGTTTATGAA-TGATTTA-TCATTAAATTATAAATGATTTATTATTA
1 AAG-TTAT-AACTGATTTACT-ACTAAATTATCAATGATTTATTA-TA
* * *
15183283 AA-TTGTTAA-TGATTTACTACTAAATTATTAATGGTTTATTATA
1 AAGTT-ATAACTGATTTACTACTAAATTATCAATGATTTATTATA
* * * *
15183326 AAGTTATAACTGATTTACTACTAATTTATCGATTATTTGTTATA
1 AAGTTATAACTGATTTACTACTAAATTATCAATGATTTATTATA
15183370 AAGTTAT
1 AAGTTAT
15183377 CATTGATTAA
Statistics
Matches: 142, Mismatches: 31, Indels: 19
0.74 0.16 0.10
Matches are distributed among these distances:
43 33 0.23
44 105 0.74
45 3 0.02
46 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (44 bp):
AAGTTATAACTGATTTACTACTAAATTATCAATGATTTATTATA
Found at i:15183500 original size:21 final size:20
Alignment explanation
Indices: 15183475--15183543 Score: 56
Period size: 21 Copynumber: 3.4 Consensus size: 20
15183465 TAAGTAATTA
15183475 ATTTACTATTACATTATATCT
1 ATTTACTATTA-ATTATATCT
*
15183496 ATTTACTA--AATTATCAAT-A
1 ATTTACTATTAATTAT--ATCT
15183515 ATTTACTATTATATTATA-CGT
1 ATTTACTATTA-ATTATATC-T
15183536 ATTTACTA
1 ATTTACTA
15183544 CTATGTTATC
Statistics
Matches: 39, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
18 5 0.13
19 9 0.23
20 3 0.08
21 17 0.44
22 5 0.13
ACGTcount: A:0.38, C:0.12, G:0.01, T:0.49
Consensus pattern (20 bp):
ATTTACTATTAATTATATCT
Found at i:15183716 original size:22 final size:22
Alignment explanation
Indices: 15183691--15183760 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
15183681 TCAATGATCA
15183691 ACTACTAAATTTTTAATTATTT
1 ACTACTAAATTTTTAATTATTT
* * *
15183713 ACTACTAAGTTATTACTTATTT
1 ACTACTAAATTTTTAATTATTT
* *
15183735 ACCACTAAATTATTT-ATGATTT
1 ACTACTAAATT-TTTAATTATTT
15183757 ACTA
1 ACTA
15183761 TTATCAATTA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 36 0.95
23 2 0.05
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49
Consensus pattern (22 bp):
ACTACTAAATTTTTAATTATTT
Found at i:15183803 original size:21 final size:22
Alignment explanation
Indices: 15183779--15183819 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15183769 TAATTACTAT
15183779 TCAAAC-AAAACTAATTTACGA
1 TCAAACTAAAACTAATTTACGA
**
15183800 TCAAACTATCACTAATTTAC
1 TCAAACTAAAACTAATTTAC
15183820 TATTAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.29
Consensus pattern (22 bp):
TCAAACTAAAACTAATTTACGA
Found at i:15184037 original size:11 final size:11
Alignment explanation
Indices: 15184018--15184053 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
15184008 GACTACTAAA
15184018 TTATCATTAAT
1 TTATCATTAAT
* *
15184029 TTATTATTAAG
1 TTATCATTAAT
15184040 TTATCATTAAT
1 TTATCATTAAT
15184051 TTA
1 TTA
15184054 CTACTAAGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (11 bp):
TTATCATTAAT
Found at i:15184043 original size:22 final size:22
Alignment explanation
Indices: 15183992--15184148 Score: 110
Period size: 22 Copynumber: 7.3 Consensus size: 22
15183982 TATTGATTTA
* * *
15183992 TAAGTTATGAATT-ATTGACTAC
1 TAAGTTAT-CATTAATTTACTAT
* *
15184014 TAAATTATCATTAATTTATTAT
1 TAAGTTATCATTAATTTACTAT
*
15184036 TAAGTTATCATTAATTTACTAC
1 TAAGTTATCATTAATTTACTAT
*
15184058 TAAGTTATCCA-TGATTTACTAT
1 TAAGTTAT-CATTAATTTACTAT
* * * * *
15184080 CAAGTTATTACTAATTAATTAT
1 TAAGTTATCATTAATTTACTAT
* *
15184102 TAAGTTATCGA-TGATTT-CTAC
1 TAAGTTATC-ATTAATTTACTAT
*
15184123 TAAGTTAT-ATTAA-TTACTTT
1 TAAGTTATCATTAATTTACTAT
15184143 TAAGTT
1 TAAGTT
15184149 TTTAATAATT
Statistics
Matches: 105, Mismatches: 24, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
19 3 0.03
20 10 0.10
21 14 0.13
22 75 0.71
23 3 0.03
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.47
Consensus pattern (22 bp):
TAAGTTATCATTAATTTACTAT
Found at i:15184075 original size:44 final size:43
Alignment explanation
Indices: 15183992--15184138 Score: 129
Period size: 44 Copynumber: 3.4 Consensus size: 43
15183982 TATTGATTTA
* * * *
15183992 TAAGTTATGAATT-ATTGACTACTAAATTAT-CATTAATTTATTAT
1 TAAGTTAT--ATTAATTAACTACTAAGTTATCCA-TGATTTACTAT
*
15184036 TAAGTTATCATTAATTTACTACTAAGTTATCCATGATTTACTAT
1 TAAGTTAT-ATTAATTAACTACTAAGTTATCCATGATTTACTAT
* * * * * *
15184080 CAAGTTATTACTAATTAATTATTAAGTTATCGATGATTT-CTAC
1 TAAGTTA-TATTAATTAACTACTAAGTTATCCATGATTTACTAT
15184123 TAAGTTATATTAATTA
1 TAAGTTATATTAATTA
15184139 CTTTTAAGTT
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 8 0.09
43 12 0.14
44 63 0.73
45 3 0.03
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (43 bp):
TAAGTTATATTAATTAACTACTAAGTTATCCATGATTTACTAT
Found at i:15184161 original size:63 final size:65
Alignment explanation
Indices: 15184025--15184171 Score: 174
Period size: 63 Copynumber: 2.3 Consensus size: 65
15184015 AAATTATCAT
* *
15184025 TAATTTATTATTAAGTTATCATTAATTTACTACTAAGTTATCCATGATTTACTATCAAGTTATTA
1 TAATTAATTATTAAGTTATCATTAATTTACTACTAAGTTAT-CATGAATTACTATCAAGTTATTA
*
15184090 C
65 A
* * * * *
15184091 TAATTAATTATTAAGTTATCGA-TGATTT-CTACTAAGTTAT-ATTAATTACTTTTAAGTTTTTA
1 TAATTAATTATTAAGTTATC-ATTAATTTACTACTAAGTTATCATGAATTACTATCAAGTTATTA
15184153 A
65 A
*
15184154 TAATTAATTAATAAGTTA
1 TAATTAATTATTAAGTTA
15184172 CCAATTATAT
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
63 34 0.48
65 12 0.17
66 24 0.34
67 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (65 bp):
TAATTAATTATTAAGTTATCATTAATTTACTACTAAGTTATCATGAATTACTATCAAGTTATTAA
Found at i:15188361 original size:28 final size:28
Alignment explanation
Indices: 15188319--15188422 Score: 140
Period size: 28 Copynumber: 3.8 Consensus size: 28
15188309 TGATAAAAAA
* *
15188319 TTAGATGTGTATTAGTGGTTTATGAAAG
1 TTAGATGTTTGTTAGTGGTTTATGAAAG
15188347 TTAGATGTTTGTTAGTGGTTTATGAAAG
1 TTAGATGTTTGTTAGTGGTTTATGAAAG
* **
15188375 TTAGATGTATGTTAGTGGTTGGTGAAAG
1 TTAGATGTTTGTTAGTGGTTTATGAAAG
15188403 TTA-AT-TGTTGTTAGTGGTTT
1 TTAGATGT-TTGTTAGTGGTTT
15188423 TTGTTTATGA
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 13 0.19
28 54 0.79
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (28 bp):
TTAGATGTTTGTTAGTGGTTTATGAAAG
Found at i:15193786 original size:16 final size:15
Alignment explanation
Indices: 15193765--15193794 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
15193755 CTTCTCCTTA
15193765 TTTGCTATTCCTTTCC
1 TTTGCTA-TCCTTTCC
15193781 TTTGCTATCCTTTC
1 TTTGCTATCCTTTC
15193795 TATATATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.07, C:0.30, G:0.07, T:0.57
Consensus pattern (15 bp):
TTTGCTATCCTTTCC
Found at i:15197102 original size:5 final size:5
Alignment explanation
Indices: 15197055--15197105 Score: 79
Period size: 5 Copynumber: 10.6 Consensus size: 5
15197045 ACTAATAATA
*
15197055 ATATT ATACT ATA-- ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
15197103 ATA
1 ATA
15197106 ACATGCAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
3 3 0.07
5 40 0.93
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:15197595 original size:115 final size:115
Alignment explanation
Indices: 15197476--15197718 Score: 264
Period size: 115 Copynumber: 2.1 Consensus size: 115
15197466 AAAAGTGTCT
* *
15197476 AAGACTAAGTCGAGGTTGAA-GATGAATGATCGGGACAATGCCATAACTAA-AAAATATGATCTA
1 AAGACTAAGTCGAGGTT-AAGGATGAATGATCGAGACAATGCCACAACTAAGAAAA-ATGATCTA
** *
15197539 GACTGAACT-GAGATTGGATGATTGAGACGATGCTGTGAGTCTTAAAA-TGACC
64 GACTG-ACTCGAGATTGGATGATTGAGACGATGCCATGAGTC-TAAAAGCGACC
* * * * * *
15197591 AAGACCGAA-TCGAGGTTAAGGATGAATGATCGAGACGATGCCACGAGTAAGAAAAATGATTTGG
1 AAGA-CTAAGTCGAGGTTAAGGATGAATGATCGAGACAATGCCACAACTAAGAAAAATGATCTAG
* * *
15197655 ACTGAGTCGATATTGGATGATTGAGATGATGCCATGAGTCTAAAAGCGACC
65 ACTGACTCGAGATTGGATGATTGAGACGATGCCATGAGTCTAAAAGCGACC
15197706 AAGA-TAGAGTCGA
1 AAGACTA-AGTCGA
15197719 AATCATGGAT
Statistics
Matches: 106, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
113 1 0.01
114 10 0.09
115 88 0.83
116 7 0.07
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (115 bp):
AAGACTAAGTCGAGGTTAAGGATGAATGATCGAGACAATGCCACAACTAAGAAAAATGATCTAGA
CTGACTCGAGATTGGATGATTGAGACGATGCCATGAGTCTAAAAGCGACC
Found at i:15198314 original size:115 final size:114
Alignment explanation
Indices: 15198142--15198390 Score: 268
Period size: 115 Copynumber: 2.2 Consensus size: 114
15198132 ATGAATGATC
** * *
15198142 AGGATGATGCTGCGAGT-TTGAAAGTGACCAAGATCGAGTTAAGGTCATATATGAATGACCGAAA
1 AGGATGATGCCACGAGTCTT-ATAGTGACCAAGATCGAGTTAAGGTCAGATA-GAATGACCGAAA
* * * * * * *
15198206 TGATGTCGCGAGTCAGAAAAATGATTTAGACTAAGTCAAGATTGGATGACT
64 CGATGTCGCAAGTCAAAAAAATAATTTAGACTAAGCCAAGATCGGAGGACT
* * * **
15198257 AGGATGATGCCATGAGTCTTATAGTGACTAAGATCGAGTTGAGGTCGAGGATA-AATGACCGGGA
1 AGGATGATGCCACGAGTCTTATAGTGACCAAGATCGAGTTAAGGTC-A-GATAGAATGACCGAAA
* * *
15198321 CGATGTTGCAAGTCAAAAAAATAATTTGGATTAAGCCAAGATCGGAGGACT
64 CGATGTCGCAAGTCAAAAAAATAATTTAGACTAAGCCAAGATCGGAGGACT
*
15198372 AGGATGATGTCACGAGTCT
1 AGGATGATGCCACGAGTCT
15198391 AGAAACGACT
Statistics
Matches: 110, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
115 104 0.95
116 3 0.03
117 3 0.03
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (114 bp):
AGGATGATGCCACGAGTCTTATAGTGACCAAGATCGAGTTAAGGTCAGATAGAATGACCGAAACG
ATGTCGCAAGTCAAAAAAATAATTTAGACTAAGCCAAGATCGGAGGACT
Found at i:15208910 original size:47 final size:46
Alignment explanation
Indices: 15208841--15208930 Score: 128
Period size: 47 Copynumber: 1.9 Consensus size: 46
15208831 ATATATATGC
*
15208841 AATAAATAACTAATTAAACAAGTGTAAACAATGAAAAGAAATAAAAA
1 AATAAATAACTAATTAAACAAGTATAAACAATGAAAA-AAATAAAAA
* *
15208888 AATAAATGAA-TAATTAAGCAAGTATAAGCAATGAAAAAAATAA
1 AATAAAT-AACTAATTAAACAAGTATAAACAATGAAAAAAATAA
15208931 TCTCAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
46 6 0.15
47 31 0.79
48 2 0.05
ACGTcount: A:0.64, C:0.06, G:0.10, T:0.20
Consensus pattern (46 bp):
AATAAATAACTAATTAAACAAGTATAAACAATGAAAAAAATAAAAA
Found at i:15209939 original size:18 final size:18
Alignment explanation
Indices: 15209910--15209959 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
15209900 AAAAAATAGA
15209910 CAAAAAATAAAT-AAAAT
1 CAAAAAATAAATGAAAAT
15209927 CAAAAAATAAAATGAAAAT
1 CAAAAAAT-AAATGAAAAT
15209946 -AAAAAA-AAA-GAAAA
1 CAAAAAATAAATGAAAA
15209960 CCTGTGATCG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
15 5 0.16
16 3 0.10
17 8 0.26
18 10 0.32
19 5 0.16
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.12
Consensus pattern (18 bp):
CAAAAAATAAATGAAAAT
Found at i:15210828 original size:3 final size:3
Alignment explanation
Indices: 15210820--15210863 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
15210810 AAGACAAAAT
* * *
15210820 TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA GAA GAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
15210864 TGATAATGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:15210920 original size:13 final size:13
Alignment explanation
Indices: 15210902--15210940 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
15210892 AACACTAATA
15210902 ATAATATTATACT
1 ATAATATTATACT
*
15210915 ATAATATTATATT
1 ATAATATTATACT
15210928 ATATTATATTATA
1 ATA--ATATTATA
15210941 ACATGCAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 15 0.65
15 8 0.35
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (13 bp):
ATAATATTATACT
Found at i:15213617 original size:12 final size:12
Alignment explanation
Indices: 15213590--15213627 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
15213580 TATCACATCA
15213590 AAATAAATAA--
1 AAATAAATAATC
15213600 AAATAAATAATC
1 AAATAAATAATC
*
15213612 AAATAAAAAATC
1 AAATAAATAATC
15213624 AAAT
1 AAAT
15213628 CACAACAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 10 0.40
12 15 0.60
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (12 bp):
AAATAAATAATC
Found at i:15214670 original size:17 final size:19
Alignment explanation
Indices: 15214643--15214678 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
15214633 GAATCCTTAT
15214643 ATTTCAAT-AAATTATTAA
1 ATTTCAATAAAATTATTAA
15214661 ATTT-AATAAAATTATTAA
1 ATTTCAATAAAATTATTAA
15214679 TGGTTCAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.18
18 14 0.82
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTTCAATAAAATTATTAA
Found at i:15215615 original size:15 final size:14
Alignment explanation
Indices: 15215589--15215619 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
15215579 CCAACTAAAC
15215589 AATAAAAATAAATA
1 AATAAAAATAAATA
15215603 AATAAATAATAAATA
1 AATAAA-AATAAATA
15215618 AA
1 AA
15215620 ATACTTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AATAAAAATAAATA
Found at i:15219653 original size:15 final size:16
Alignment explanation
Indices: 15219635--15219664 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15219625 AGCTTTTAGG
15219635 GTTTAATT-ATTGATA
1 GTTTAATTAATTGATA
15219650 GTTTAATTAATTGAT
1 GTTTAATTAATTGAT
15219665 CTCAATTCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (16 bp):
GTTTAATTAATTGATA
Found at i:15220723 original size:46 final size:46
Alignment explanation
Indices: 15220635--15220730 Score: 122
Period size: 46 Copynumber: 2.1 Consensus size: 46
15220625 ATATTTATAT
* * * * *
15220635 AAAATAAATAAAAATAAAAAATTAAGAAAAACATACATATCACATC
1 AAAATAAATAAAAATAAAAAATTAAAAAAAAAACACAAATCACAAC
*
15220681 AAAATAAATAAAAATAAATAA-TAAAATAAAAAACACAAATCACAAC
1 AAAATAAATAAAAATAAAAAATTAAAA-AAAAAACACAAATCACAAC
15220727 AAAA
1 AAAA
15220731 CATCAAAACC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 4 0.09
46 39 0.91
ACGTcount: A:0.72, C:0.10, G:0.01, T:0.17
Consensus pattern (46 bp):
AAAATAAATAAAAATAAAAAATTAAAAAAAAAACACAAATCACAAC
Found at i:15222633 original size:16 final size:16
Alignment explanation
Indices: 15222614--15222654 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
15222604 TAACTTAAGG
*
15222614 AAAGTTTAGTTTA-ATA
1 AAAGTTT-GTATATATA
15222630 AAAGTTTGTATATATA
1 AAAGTTTGTATATATA
15222646 AAAGTTTGT
1 AAAGTTTGT
15222655 GATTATTGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (16 bp):
AAAGTTTGTATATATA
Found at i:15224479 original size:15 final size:15
Alignment explanation
Indices: 15224459--15224489 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15224449 ACTCAAAAAC
*
15224459 AGTTGTTTGATAGAA
1 AGTTGTATGATAGAA
15224474 AGTTGTATGATAGAA
1 AGTTGTATGATAGAA
15224489 A
1 A
15224490 ACAGTAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.35
Consensus pattern (15 bp):
AGTTGTATGATAGAA
Found at i:15232951 original size:21 final size:21
Alignment explanation
Indices: 15232912--15232951 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
15232902 TACTTCTCTT
*
15232912 TTTTCCTTTTTTTCTTTTTTG
1 TTTTCCTTTTTTTATTTTTTG
*
15232933 TTTT-CTTTTTTTATATTTT
1 TTTTCCTTTTTTTATTTTTT
15232952 ATGCCTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.05, C:0.10, G:0.03, T:0.82
Consensus pattern (21 bp):
TTTTCCTTTTTTTATTTTTTG
Found at i:15233047 original size:18 final size:19
Alignment explanation
Indices: 15233024--15233087 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 19
15233014 AAAAAAAAAG
*
15233024 AAAATAAAATTAGA-ATAT
1 AAAATAAAATTAAATATAT
* *
15233042 AAAAT-ATAGTAAATATAT
1 AAAATAAAATTAAATATAT
* *
15233060 AAAATAAAA-TAAAAATCAA
1 AAAATAAAATTAAATAT-AT
15233079 AAAATAAAA
1 AAAATAAAA
15233088 AGAAAATAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
17 5 0.14
18 20 0.54
19 12 0.32
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.23
Consensus pattern (19 bp):
AAAATAAAATTAAATATAT
Found at i:15233093 original size:13 final size:13
Alignment explanation
Indices: 15233065--15233107 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
15233055 TATATAAAAT
*
15233065 AAAATAAAAATCAA
1 AAAATAAAAA-GAA
15233079 AAAATAAAAAGAA
1 AAAATAAAAAGAA
* *
15233092 AATAGAAAAAGAA
1 AAAATAAAAAGAA
15233105 AAA
1 AAA
15233108 CTTGCGATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.81, C:0.02, G:0.07, T:0.09
Consensus pattern (13 bp):
AAAATAAAAAGAA
Found at i:15233093 original size:19 final size:18
Alignment explanation
Indices: 15233060--15233107 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
15233050 GTAAATATAT
15233060 AAAATAAAATAAAAATCA-A
1 AAAATAAAA-AAAAAT-AGA
15233079 AAAATAAAAAGAAAATAGA
1 AAAATAAAAA-AAAATAGA
*
15233098 AAAAGAAAAA
1 AAAATAAAAA
15233108 CTTGCGATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 2 0.08
19 24 0.92
ACGTcount: A:0.81, C:0.02, G:0.06, T:0.10
Consensus pattern (18 bp):
AAAATAAAAAAAAATAGA
Found at i:15233507 original size:22 final size:21
Alignment explanation
Indices: 15233482--15233529 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
15233472 TCAAAAATTT
*
15233482 AAAAAATCCTAGAAAATTTCAA
1 AAAAAATCCTA-AAAATTCCAA
* *
15233504 AAAAAATTCTAAAAATTCCTA
1 AAAAAATCCTAAAAATTCCAA
15233525 AAAAA
1 AAAAA
15233530 TTCATAGATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.62, C:0.12, G:0.02, T:0.23
Consensus pattern (21 bp):
AAAAAATCCTAAAAATTCCAA
Found at i:15233517 original size:20 final size:20
Alignment explanation
Indices: 15233482--15233532 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
15233472 TCAAAAATTT
*
15233482 AAAAAATCCTAGAAAATTTCAA
1 AAAAAATTCTA-AAAA-TTCAA
**
15233504 AAAAAATTCTAAAAATTCCT
1 AAAAAATTCTAAAAATTCAA
15233524 AAAAAATTC
1 AAAAAATTC
15233533 ATAGATCGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 12 0.46
21 4 0.15
22 10 0.38
ACGTcount: A:0.59, C:0.14, G:0.02, T:0.25
Consensus pattern (20 bp):
AAAAAATTCTAAAAATTCAA
Found at i:15233965 original size:3 final size:3
Alignment explanation
Indices: 15233957--15234010 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
15233947 AAGAAAAAAC
15233957 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15234005 TAA TAA
1 TAA TAA
15234011 AACACATCCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:15234644 original size:69 final size:69
Alignment explanation
Indices: 15234507--15234652 Score: 177
Period size: 69 Copynumber: 2.1 Consensus size: 69
15234497 TAAACGAAGG
* * * * *
15234507 ATAATTTTGCTTTAATCATGCACTATGGCACCCACCATGACAGTGGCACCATGATCATGACAAGT
1 ATAA-TTTGCTTTAATCATGCACCATGGCACCCACCATGAAAGTGGCACCAAGACCATAACAAGT
15234572 GACTC
65 GACTC
* * * * *
15234577 ATAATTTGCTTTAGTCATTCCCCATGGCACCCA-CGTGAAAGTGGCACCAAGACCATAACAATTT
1 ATAATTTGCTTTAATCATGCACCATGGCACCCACCATGAAAGTGGCACCAAGACCATAACAA-GT
15234641 GACTC
65 GACTC
15234646 ATAATTT
1 ATAATTT
15234653 TGGTTCATTT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
68 23 0.35
69 38 0.58
70 4 0.06
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (69 bp):
ATAATTTGCTTTAATCATGCACCATGGCACCCACCATGAAAGTGGCACCAAGACCATAACAAGTG
ACTC
Found at i:15248821 original size:19 final size:19
Alignment explanation
Indices: 15248797--15248839 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
15248787 TATTTTATTA
*
15248797 ATTAAAATAATTAAAATTT-
1 ATTAAAAT-ATAAAAATTTG
15248816 ATTAAAATATAAAAATTTG
1 ATTAAAATATAAAAATTTG
15248835 ATTAA
1 ATTAA
15248840 GTTTACGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
ATTAAAATATAAAAATTTG
Found at i:15249718 original size:32 final size:32
Alignment explanation
Indices: 15249682--15249749 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
15249672 TATGATACAT
* *
15249682 AATTTTGATATAAAATATAATAAAAATATATA
1 AATTTTAATATAAAACATAATAAAAATATATA
*** *
15249714 AATTTTAATATTTTACATAATATAAATATATA
1 AATTTTAATATAAAACATAATAAAAATATATA
15249746 AATT
1 AATT
15249750 ATCAAATATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (32 bp):
AATTTTAATATAAAACATAATAAAAATATATA
Found at i:15250999 original size:3 final size:3
Alignment explanation
Indices: 15250993--15251018 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
15250983 TTTTTTTAAG
15250993 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
15251019 TTGTTTCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:15254744 original size:21 final size:21
Alignment explanation
Indices: 15254720--15254759 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
15254710 AACTATCATA
*
15254720 AAACCATAGTAAAATAACATG
1 AAACCAAAGTAAAATAACATG
* *
15254741 AAACTAAATTAAAATAACA
1 AAACCAAAGTAAAATAACA
15254760 AGCAAATAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.62, C:0.12, G:0.05, T:0.20
Consensus pattern (21 bp):
AAACCAAAGTAAAATAACATG
Found at i:15256085 original size:146 final size:145
Alignment explanation
Indices: 15255770--15256167 Score: 494
Period size: 146 Copynumber: 2.7 Consensus size: 145
15255760 TTAAAACCCC
* *
15255770 AAAAATCATGAAATATTATGAAATTGAA-ATCTGAAAAGTTTCATGAAAATTTGAGCTT-GAGAA
1 AAAAATCATGAAATATTATGAAATT-AAGATATGAAAAGTTTCATGAAAATTCGAGCTTAG-GAA
** ** * * * *
15255833 AATCAAATTATGAAAATACCCCTATAGGGGTATTTTAGTAATCTCAAATTTCTCAGGGTACTGCT
64 GGTCAAATTACAAAAATACACTTATAGGGGTATTTTGGTAATTTCAAATTTCTCAGGGTACTGCT
15255898 ATGATTTCAAATGCACT
129 ATGATTTCAAATGCACT
* * * *
15255915 AAAAATCGTGAAATATTATAAAATTAAGATATAAAAAGTTTCATGAAAATTCGAGTTTAGGAAGG
1 AAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATGAAAATTCGAGCTTAGGAAGG
* ** * ** *
15255980 TTAAATTACAAAAATATGCTTATAGGGGTATTTTGGTAATTTCACATTTTCTTGGGGTACTGCTG
66 TCAAATTACAAAAATACACTTATAGGGGTATTTTGGTAATTTCA-AATTTCTCAGGGTACTGCTA
15256045 TGATTTCAAATGCACT
130 TGATTTCAAATGCACT
* * * * * *
15256061 AAAAATCATAAAATATTATGAAATTAAGGTTTGAAAAGCTTCATGAAATTTCAAGCTTAGGAAGG
1 AAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATGAAAATTCGAGCTTAGGAAGG
* *
15256126 CCAAATTACAAAAATACACTTATAGGGGTATATTGGTAATTT
66 TCAAATTACAAAAATACACTTATAGGGGTATTTTGGTAATTT
15256168 TGCACTTCTC
Statistics
Matches: 215, Mismatches: 35, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
144 2 0.01
145 88 0.41
146 125 0.58
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.33
Consensus pattern (145 bp):
AAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATGAAAATTCGAGCTTAGGAAGG
TCAAATTACAAAAATACACTTATAGGGGTATTTTGGTAATTTCAAATTTCTCAGGGTACTGCTAT
GATTTCAAATGCACT
Found at i:15256481 original size:13 final size:13
Alignment explanation
Indices: 15256463--15256496 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
15256453 TTATGGTCTC
15256463 TTTAAGGGATTTT
1 TTTAAGGGATTTT
15256476 TTTAAGGGATTTT
1 TTTAAGGGATTTT
15256489 TTTAAGGG
1 TTTAAGGG
15256497 CTTGGGTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (13 bp):
TTTAAGGGATTTT
Found at i:15257057 original size:127 final size:124
Alignment explanation
Indices: 15256834--15257063 Score: 327
Period size: 127 Copynumber: 1.8 Consensus size: 124
15256824 GAAGACTTAC
* *
15256834 AAATCTCAAAAATCTTTGAATACTCGTAATAGAGGCGTTGAAACTTTGAAAATTTAAAATATTTT
1 AAATCTCAAAAATCTTTGAATACTCGTAATAAAGGCGTTGAAACTTTAAAAATTTAAAATATTTT
* * *
15256899 GCTCGAAGGTATTGGAAATTATATTTGGAGGTCTTTGAGATTATGCTCGGAGGCCTCAT
66 GCTAGAAGCTATTGGAAATTATATCTGGAGGTCTTTGAGATTATGCTCGGAGGCCTCAT
* * *
15256958 AAATCTTAAAAATCTTTGAATGCTCCTAGTAATAAAGGCGTTGAAACTTTAAAAATTTAAAATGT
1 AAATCTCAAAAATCTTTGAATACT-C--GTAATAAAGGCGTTGAAACTTTAAAAATTTAAAATAT
* *
15257023 TTTGCCTAG-AGCTGTTGGAAATTATGTCTGGAGGTCTTTGA
63 TTTG-CTAGAAGCTATTGGAAATTATATCTGGAGGTCTTTGA
15257064 TTGCTCCCCA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
124 22 0.24
125 1 0.01
127 66 0.72
128 3 0.03
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (124 bp):
AAATCTCAAAAATCTTTGAATACTCGTAATAAAGGCGTTGAAACTTTAAAAATTTAAAATATTTT
GCTAGAAGCTATTGGAAATTATATCTGGAGGTCTTTGAGATTATGCTCGGAGGCCTCAT
Found at i:15257128 original size:87 final size:87
Alignment explanation
Indices: 15256970--15257392 Score: 530
Period size: 87 Copynumber: 4.9 Consensus size: 87
15256960 ATCTTAAAAA
* * *
15256970 TCTTTGAATGCTCCT-AGTAATAAAGGCGTTGAAACTTTAAAAATTTAAAATGTTTTGCCTAGAG
1 TCTTTGAATGCTCCTCA-TAATAGAGGCGTTGAAACTTTAAAAATTTAAAATGCTTTGCCCAGAG
* *
15257034 CTGTTGGAAATTATGTCTGGAGG
65 GTCTTGGAAATTATGTCTGGAGG
* * * *
15257057 TCTTTGATTGCTCCCCATAATAGAGGGGTTGAAACTTTAAAAATTTAAAATGCTTTGCCCAAAGG
1 TCTTTGAATGCTCCTCATAATAGAGGCGTTGAAACTTTAAAAATTTAAAATGCTTTGCCCAGAGG
15257122 TCTTGGAAATTATGTGC-GGAGG
66 TCTTGGAAATTATGT-CTGGAGG
* * * * * *
15257144 TCTTTGAATGTTCCTCGTAATAGAGGCATTGAAACTTTAAATATTTAAAATGCTTTGCTCGGAGG
1 TCTTTGAATGCTCCTCATAATAGAGGCGTTGAAACTTTAAAAATTTAAAATGCTTTGCCCAGAGG
15257209 TCTTGGAAATTATGTCTGGAGG
66 TCTTGGAAATTATGTCTGGAGG
* * * * * *
15257231 TCTTTGAATGCTCATCGTAATAGAAGCGTTGAAACTTTAAAAATTTAAAATGTTTTGCTCGGAGG
1 TCTTTGAATGCTCCTCATAATAGAGGCGTTGAAACTTTAAAAATTTAAAATGCTTTGCCCAGAGG
15257296 TCTTGGAAATTATG-CTCGGAGG
66 TCTTGGAAATTATGTCT-GGAGG
* * * * **
15257318 TCTTTGAATGCTCCTTC-TAATATAGACGTTGAAACTTTAAAATTTTAAAATGCTTTGTCTGGAG
1 TCTTTGAATGCTCC-TCATAATAGAGGCGTTGAAACTTTAAAAATTTAAAATGCTTTGCCCAGAG
*
15257382 GCCTTGGAAAT
65 GTCTTGGAAAT
15257393 GTATCTTGGT
Statistics
Matches: 296, Mismatches: 35, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
86 3 0.01
87 289 0.98
88 4 0.01
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (87 bp):
TCTTTGAATGCTCCTCATAATAGAGGCGTTGAAACTTTAAAAATTTAAAATGCTTTGCCCAGAGG
TCTTGGAAATTATGTCTGGAGG
Found at i:15257693 original size:18 final size:18
Alignment explanation
Indices: 15257670--15257719 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
15257660 TCTCATCAAA
* *
15257670 TGATGCTAATGGAAATGT
1 TGATGCGAATGCAAATGT
15257688 TGATGCGAATGCAAATGT
1 TGATGCGAATGCAAATGT
** *
15257706 CAATGCAAATGCAA
1 TGATGCGAATGCAA
15257720 GGATGTGAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (18 bp):
TGATGCGAATGCAAATGT
Found at i:15257908 original size:41 final size:41
Alignment explanation
Indices: 15257863--15257947 Score: 134
Period size: 41 Copynumber: 2.1 Consensus size: 41
15257853 TATGGTGCAA
15257863 ATGCAAATGCAAGTGATGCAAATGCAAATGTCTTTCTTATG
1 ATGCAAATGCAAGTGATGCAAATGCAAATGTCTTTCTTATG
** * *
15257904 ATGCAAATGCAAGTGATGCAAATTTAAATGTTTTTTTTATG
1 ATGCAAATGCAAGTGATGCAAATGCAAATGTCTTTCTTATG
15257945 ATG
1 ATG
15257948 TATATGTGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (41 bp):
ATGCAAATGCAAGTGATGCAAATGCAAATGTCTTTCTTATG
Found at i:15257909 original size:26 final size:26
Alignment explanation
Indices: 15257828--15257915 Score: 89
Period size: 26 Copynumber: 3.6 Consensus size: 26
15257818 TGTAGATGTC
* *
15257828 ATGATACAAATGCAAATTTCTTTCTT
1 ATGATGCAAATGCAAATGTCTTTCTT
* *
15257854 ATGGTGCAAATGCAAATG-----C-A
1 ATGATGCAAATGCAAATGTCTTTCTT
15257874 AGTGATGCAAATGCAAATGTCTTTCTT
1 A-TGATGCAAATGCAAATGTCTTTCTT
15257901 ATGATGCAAATGCAA
1 ATGATGCAAATGCAA
15257916 GTGATGCAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
20 1 0.02
21 17 0.35
26 30 0.61
27 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (26 bp):
ATGATGCAAATGCAAATGTCTTTCTT
Found at i:15258067 original size:133 final size:133
Alignment explanation
Indices: 15257904--15258151 Score: 336
Period size: 133 Copynumber: 1.9 Consensus size: 133
15257894 CTTTCTTATG
* * ** * ** * *
15257904 ATGCAAATGCAAGTGATGCAAATTTAAATGTTTTTTTTATGATGTATATG-TGAATGCAAATGTC
1 ATGCAAATGCAAGCGACGCAAATGCAAATGTCTTTTTTATGACATAGA-GCTAAATGCAAATGTC
* *
15257968 TTTCTCATGATGCTCATGCAAGTGCGAATGCAAATGATGCAAATGCGAATGCCCTTGTTCTTTTT
65 TTTCTCACGATGCACATGCAAGTGCGAATGCAAATGATGCAAATGCGAATGCCCTTGTTCTTTTT
15258033 TTTT
130 TTTT
*
15258037 ATGCAAATGCAAGCGACGCAAATGCAAATGTCTTTTTTGTGACATAGAGCTAAATGCAAATGTCT
1 ATGCAAATGCAAGCGACGCAAATGCAAATGTCTTTTTTATGACATAGAGCTAAATGCAAATGTCT
* * * *
15258102 TTTTCACGATGCACATGCAAGTGTGAATGCGAGTGATGCAAATGCGAATG
66 TTCTCACGATGCACATGCAAGTGCGAATGCAAATGATGCAAATGCGAATG
15258152 TCTTTTTTTG
Statistics
Matches: 98, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
132 1 0.01
133 97 0.99
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (133 bp):
ATGCAAATGCAAGCGACGCAAATGCAAATGTCTTTTTTATGACATAGAGCTAAATGCAAATGTCT
TTCTCACGATGCACATGCAAGTGCGAATGCAAATGATGCAAATGCGAATGCCCTTGTTCTTTTTT
TTT
Found at i:15259230 original size:20 final size:20
Alignment explanation
Indices: 15259197--15259238 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
15259187 CATGTCTCTG
*
15259197 TTTTTCTTTGCCTTTTCTTTT
1 TTTTTCATTGCCTTTT-TTTT
15259218 TTTTTCATT-CCTTTTTTTT
1 TTTTTCATTGCCTTTTTTTT
15259237 TT
1 TT
15259239 AGACATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 6 0.30
21 8 0.40
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTTTCATTGCCTTTTTTTT
Found at i:15261060 original size:21 final size:21
Alignment explanation
Indices: 15261021--15261061 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15261011 ACTATTTGCT
*
15261021 TGTTATTTTAATTTAGTTTCC
1 TGTTATTTTAATATAGTTTCC
* *
15261042 TGTTATTTTACTATGGTTTC
1 TGTTATTTTAATATAGTTTC
15261062 ATGATAGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.10, G:0.12, T:0.61
Consensus pattern (21 bp):
TGTTATTTTAATATAGTTTCC
Found at i:15264621 original size:11 final size:11
Alignment explanation
Indices: 15264605--15264630 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15264595 TAAAATTAAA
15264605 AAATATATATT
1 AAATATATATT
15264616 AAATATATATT
1 AAATATATATT
15264627 AAAT
1 AAAT
15264631 GAGTATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
AAATATATATT
Found at i:15264772 original size:19 final size:18
Alignment explanation
Indices: 15264728--15264780 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
15264718 TTATAATTAT
*
15264728 TTATTAT-TTTATTCGTG
1 TTATTATATATATTCGTG
*
15264745 TTTTTATATATATTCGTG
1 TTATTATATATATTCGTG
*
15264763 TTAATTATATCTATTCGT
1 TT-ATTATATATATTCGT
15264781 ATATATTTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 6 0.20
18 11 0.37
19 13 0.43
ACGTcount: A:0.23, C:0.08, G:0.09, T:0.60
Consensus pattern (18 bp):
TTATTATATATATTCGTG
Found at i:15264795 original size:29 final size:28
Alignment explanation
Indices: 15264750--15264822 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 28
15264740 TCGTGTTTTT
* * * *
15264750 ATATATATTCGTGTTAATTATATCTATTC
1 ATATATATTTGTATTAA-CATATCAATTC
*
15264779 GTATATATTTGTATTAACATATCAATTC
1 ATATATATTTGTATTAACATATCAATTC
* *
15264807 ATGTATTTTTGTATTA
1 ATATATATTTGTATTA
15264823 TTCGTGTTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 22 0.61
29 14 0.39
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (28 bp):
ATATATATTTGTATTAACATATCAATTC
Found at i:15266767 original size:89 final size:90
Alignment explanation
Indices: 15266588--15266765 Score: 288
Period size: 90 Copynumber: 2.0 Consensus size: 90
15266578 TAATGATTGG
* * * *
15266588 ACACGTAGTATATTAATTATAATAAAAATAATATTTTTTAAAGAAAAAAACATAATAGATTTTTT
1 ACACATAGTAGATTAATTATAATAAAAACAATATTTTTAAAAGAAAAAAACATAATAGATTTTTT
15266653 AAAATTTAGGATTTTGATATTTTTT
66 AAAATTTAGGATTTTGATATTTTTT
*
15266678 ACACATAGTAGATTAATTATAATAAAAACAATATTTTTAAAAG-AAAAAACATAGTAGATTTTTT
1 ACACATAGTAGATTAATTATAATAAAAACAATATTTTTAAAAGAAAAAAACATAATAGATTTTTT
*
15266742 AAATTTTAGGATTTTGA-ATTTTTT
66 AAAATTTAGGATTTTGATATTTTTT
15266766 TAGAAACATT
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
88 7 0.09
89 36 0.44
90 39 0.48
ACGTcount: A:0.46, C:0.04, G:0.08, T:0.42
Consensus pattern (90 bp):
ACACATAGTAGATTAATTATAATAAAAACAATATTTTTAAAAGAAAAAAACATAATAGATTTTTT
AAAATTTAGGATTTTGATATTTTTT
Found at i:15268869 original size:20 final size:22
Alignment explanation
Indices: 15268844--15268892 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
15268834 TGATAGAAGG
15268844 GATCGATCCCT-TCC-TTACCA
1 GATCGATCCCTCTCCTTTACCA
*
15268864 GATCGAT-CTTCTCCTTTACCA
1 GATCGATCCCTCTCCTTTACCA
15268885 GATCGATC
1 GATCGATC
15268893 TTCTGACTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 2 0.08
20 10 0.40
21 13 0.52
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (22 bp):
GATCGATCCCTCTCCTTTACCA
Found at i:15273398 original size:71 final size:71
Alignment explanation
Indices: 15273310--15273454 Score: 281
Period size: 71 Copynumber: 2.0 Consensus size: 71
15273300 CCACAATATA
*
15273310 CAAAGAAAAAGCCAAATCACCATACAGAAAGAAGATATGTCAAAGATAGTGAAATTATTGGTGAT
1 CAAAGAAAAAGCCAAATCACCATACAGAAAGAAGATATGTCAAAGATAGTGAAATTATTGGTAAT
15273375 CTAACT
66 CTAACT
15273381 CAAAGAAAAAGCCAAATCACCATACAGAAAGAAGATATGTCAAAGATAGTGAAATTATTGGTAAT
1 CAAAGAAAAAGCCAAATCACCATACAGAAAGAAGATATGTCAAAGATAGTGAAATTATTGGTAAT
15273446 CTAACT
66 CTAACT
15273452 CAA
1 CAA
15273455 GGGGTAAGAA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (71 bp):
CAAAGAAAAAGCCAAATCACCATACAGAAAGAAGATATGTCAAAGATAGTGAAATTATTGGTAAT
CTAACT
Done.