Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 86 of 147
Found at i:15864057 original size:13 final size:13
Alignment explanation
Indices: 15864041--15864105 Score: 51
Period size: 13 Copynumber: 5.1 Consensus size: 13
15864031 ACATAGGATC
15864041 TCATTTTAGGGTT
1 TCATTTTAGGGTT
* *
15864054 TCA-TTTAGAGTC
1 TCATTTTAGGGTT
* *
15864066 TCGTTTTAGAGTT
1 TCATTTTAGGGTT
* *
15864079 TCACTTTAGGTTT
1 TCATTTTAGGGTT
* *
15864092 TCAGTTTAAGGTT
1 TCATTTTAGGGTT
15864105 T
1 T
15864106 TGATTTAGAA
Statistics
Matches: 40, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
12 9 0.22
13 31 0.77
ACGTcount: A:0.18, C:0.11, G:0.20, T:0.51
Consensus pattern (13 bp):
TCATTTTAGGGTT
Found at i:15864073 original size:25 final size:26
Alignment explanation
Indices: 15864039--15864087 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
15864029 ACACATAGGA
*
15864039 TCTCATTTTAGGGTTTCA-TTTAGAG
1 TCTCATTTTAGAGTTTCACTTTAGAG
*
15864064 TCTCGTTTTAGAGTTTCACTTTAG
1 TCTCATTTTAGAGTTTCACTTTAG
15864088 GTTTTCAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.18, C:0.14, G:0.18, T:0.49
Consensus pattern (26 bp):
TCTCATTTTAGAGTTTCACTTTAGAG
Found at i:15864132 original size:28 final size:28
Alignment explanation
Indices: 15864096--15864152 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
15864086 AGGTTTTCAG
*
15864096 TTTAAGGTTTTGATTTAGAATTTTAATT
1 TTTAAGGTTTCGATTTAGAATTTTAATT
* **
15864124 TTTAGGGTTTCGATTTAGGGTTTTAATT
1 TTTAAGGTTTCGATTTAGAATTTTAATT
15864152 T
1 T
15864153 GAGGATTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.23, C:0.02, G:0.19, T:0.56
Consensus pattern (28 bp):
TTTAAGGTTTCGATTTAGAATTTTAATT
Found at i:15865872 original size:7 final size:6
Alignment explanation
Indices: 15865862--15865913 Score: 50
Period size: 7 Copynumber: 7.8 Consensus size: 6
15865852 AACCACCCAT
*
15865862 TAAACC ATAAACC TAAACCC TAAACTC TAAACC TTAAACC TAGAACC CAAAC
1 TAAACC -TAAACC TAAA-CC TAAAC-C TAAACC -TAAACC TA-AACC TAAAC
15865914 TAACCCTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
6 11 0.28
7 29 0.73
ACGTcount: A:0.48, C:0.33, G:0.02, T:0.17
Consensus pattern (6 bp):
TAAACC
Found at i:15865880 original size:13 final size:13
Alignment explanation
Indices: 15865862--15865908 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
15865852 AACCACCCAT
15865862 TAAACCATAAACC
1 TAAACCATAAACC
*
15865875 TAAACCCTAAACTC
1 TAAACCATAAAC-C
*
15865889 TAAACCTTAAACC
1 TAAACCATAAACC
15865902 TAGAACC
1 TA-AACC
15865909 CAAACTAACC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
13 14 0.47
14 16 0.53
ACGTcount: A:0.47, C:0.32, G:0.02, T:0.19
Consensus pattern (13 bp):
TAAACCATAAACC
Found at i:15865894 original size:27 final size:27
Alignment explanation
Indices: 15865862--15865914 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
15865852 AACCACCCAT
15865862 TAAACCATAAACCTA-AACCCTAAACTC
1 TAAACCATAAACCTAGAACCC-AAACTC
*
15865889 TAAACCTTAAACCTAGAACCCAAACT
1 TAAACCATAAACCTAGAACCCAAACT
15865915 AACCCTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.47, C:0.32, G:0.02, T:0.19
Consensus pattern (27 bp):
TAAACCATAAACCTAGAACCCAAACTC
Found at i:15866556 original size:9 final size:9
Alignment explanation
Indices: 15866542--15866588 Score: 58
Period size: 9 Copynumber: 5.2 Consensus size: 9
15866532 GTTCTTTTTA
15866542 TAAAAATTT
1 TAAAAATTT
15866551 TAAAAATTT
1 TAAAAATTT
*
15866560 TAAAACTTT
1 TAAAAATTT
**
15866569 TAAATCTTT
1 TAAAAATTT
*
15866578 TAAATATTT
1 TAAAAATTT
15866587 TA
1 TA
15866589 TTAAAAGGGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (9 bp):
TAAAAATTT
Found at i:15868458 original size:29 final size:30
Alignment explanation
Indices: 15868398--15868489 Score: 102
Period size: 29 Copynumber: 3.1 Consensus size: 30
15868388 TGTAAATAGA
*
15868398 TAATACATACATTCCATCTCATGCATATCT
1 TAATACATACATTCCATCTCATGCACATCT
*
15868428 TAATACATGCATTCCAT-TCATGCACATCT
1 TAATACATACATTCCATCTCATGCACATCT
* *
15868457 TACTAGC-TA-A-TCCATTTCATTGCACATCT
1 TAATA-CATACATTCCATCTCA-TGCACATCT
15868486 TAAT
1 TAAT
15868490 GGTAGTATCA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
27 5 0.09
28 4 0.07
29 28 0.52
30 17 0.31
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37
Consensus pattern (30 bp):
TAATACATACATTCCATCTCATGCACATCT
Found at i:15869892 original size:12 final size:12
Alignment explanation
Indices: 15869872--15869935 Score: 69
Period size: 12 Copynumber: 5.4 Consensus size: 12
15869862 GAGGGCATGC
*
15869872 AAAACGAAAAGA
1 AAAAAGAAAAGA
15869884 AAAAAGAAAAGA
1 AAAAAGAAAAGA
* *
15869896 AAAAGGAAATG-
1 AAAAAGAAAAGA
15869907 AAAAA-AAAAGA
1 AAAAAGAAAAGA
*
15869918 AAAAATGAAATGA
1 AAAAA-GAAAAGA
15869931 AAAAA
1 AAAAA
15869936 AAGAATTGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
10 4 0.09
11 9 0.21
12 20 0.47
13 10 0.23
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.05
Consensus pattern (12 bp):
AAAAAGAAAAGA
Found at i:15869940 original size:22 final size:23
Alignment explanation
Indices: 15869884--15869937 Score: 83
Period size: 23 Copynumber: 2.3 Consensus size: 23
15869874 AACGAAAAGA
15869884 AAAAAGAAAAG-AAAAAGGAAATG
1 AAAAA-AAAAGAAAAAAGGAAATG
*
15869907 AAAAAAAAAGAAAAAATGAAATG
1 AAAAAAAAAGAAAAAAGGAAATG
15869930 AAAAAAAA
1 AAAAAAAA
15869938 GAATTGAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 5 0.17
23 24 0.83
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.06
Consensus pattern (23 bp):
AAAAAAAAAGAAAAAAGGAAATG
Found at i:15872543 original size:40 final size:40
Alignment explanation
Indices: 15872499--15872592 Score: 113
Period size: 39 Copynumber: 2.4 Consensus size: 40
15872489 GAAATTTTTT
*
15872499 ATTTTTGAATGATTTCT-AAGATCTTCAGGCAAAACCTTAA
1 ATTTTTGAATGATTTCTGAA-ACCTTCAGGCAAAACCTTAA
* * *
15872539 A-TTTT-ACATGATTTTTGAAACCTTTAGGCAAAATCTTAA
1 ATTTTTGA-ATGATTTCTGAAACCTTCAGGCAAAACCTTAA
15872578 ATTTTTGAATGATTT
1 ATTTTTGAATGATTT
15872593 TCAAGACATT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
38 1 0.02
39 30 0.65
40 14 0.30
41 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.43
Consensus pattern (40 bp):
ATTTTTGAATGATTTCTGAAACCTTCAGGCAAAACCTTAA
Found at i:15872610 original size:40 final size:40
Alignment explanation
Indices: 15872386--15872705 Score: 177
Period size: 41 Copynumber: 8.0 Consensus size: 40
15872376 GAATGAGTAC
** * * * *
15872386 ATGATTTTCAAGACCTCCAGGCAAAACCTCATATTTTT-A
1 ATGATTTTCAAGACCTTTAAGCAAAATCTTAAATTTTTGA
** *
15872425 ACTGATTTTCAATGACCTTTGTGCAAAATCTTAAATCTTTGA
1 A-TGATTTTCAA-GACCTTTAAGCAAAATCTTAAATTTTTGA
* * * ** * **
15872467 ATAATCTCCAAGA-CTTTCAAGTGAAATTTTTTATTTTTGA
1 ATGATTTTCAAGACCTTT-AAGCAAAATCTTAAATTTTTGA
* * * *
15872507 ATGA-TTTCTAAGATCTTCAGGCAAAACCTTAAA-TTTT-A
1 ATGATTTTC-AAGACCTTTAAGCAAAATCTTAAATTTTTGA
* *
15872545 CATGATTTTTGAA-ACCTTTAGGCAAAATCTTAAATTTTTGA
1 -ATGA-TTTTCAAGACCTTTAAGCAAAATCTTAAATTTTTGA
* * * *
15872586 ATGATTTTCAAGACATTTAAGC-AAATTTTCAAATTGTTAA
1 ATGATTTTCAAGACCTTTAAGCAAAATCTT-AAATTTTTGA
* * ** * *
15872626 AAGATTTTCAAAAACCTTTAAGTGAAATTTTAAATTTTGGA
1 ATGATTTTC-AAGACCTTTAAGCAAAATCTTAAATTTTTGA
* * * *
15872667 AAGATTTTCAAAGACCTCTAAACAAAACCTTAAATTTTT
1 ATGATTTTC-AAGACCTTTAAGCAAAATCTTAAATTTTT
15872706 TAAAAATTCC
Statistics
Matches: 211, Mismatches: 55, Indels: 28
0.72 0.19 0.10
Matches are distributed among these distances:
38 1 0.00
39 45 0.21
40 75 0.36
41 81 0.38
42 9 0.04
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (40 bp):
ATGATTTTCAAGACCTTTAAGCAAAATCTTAAATTTTTGA
Found at i:15872776 original size:40 final size:41
Alignment explanation
Indices: 15872566--15872794 Score: 153
Period size: 40 Copynumber: 5.7 Consensus size: 41
15872556 AAACCTTTAG
* * **
15872566 GCAAAATCTT-AAATTTTTGAATGATTTTC-AAGACATTTAA
1 GCAAAAT-TTCAAATTTTTGAAAGATTTTCAAAGACCTCCAA
* * * * **
15872606 GCAAATTTTCAAATTGTTAAAAGATTTTCAAAAACCTTTAA
1 GCAAAATTTCAAATTTTTGAAAGATTTTCAAAGACCTCCAA
** * * *
15872647 GTGAAATTTTAAATTTTGGAAAGATTTTCAAAGACCTCTAA
1 GCAAAATTTCAAATTTTTGAAAGATTTTCAAAGACCTCCAA
* * * * * * *
15872688 ACAAAACCTT-AAATTTTTTAAA-AATTCCCAAGACCTCCGA
1 GCAAAA-TTTCAAATTTTTGAAAGATTTTCAAAGACCTCCAA
* * *
15872728 GTAGAATTTCAAATTTTTGAAA-ATTTTGAAAGACCTCCAA
1 GCAAAATTTCAAATTTTTGAAAGATTTTCAAAGACCTCCAA
* **
15872768 GCAAAATTTTAAAAGTTTGAAAGATTT
1 GCAAAATTTCAAATTTTTGAAAGATTT
15872795 CCACAGATCT
Statistics
Matches: 143, Mismatches: 41, Indels: 9
0.74 0.21 0.05
Matches are distributed among these distances:
39 4 0.03
40 79 0.55
41 58 0.41
42 2 0.01
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.35
Consensus pattern (41 bp):
GCAAAATTTCAAATTTTTGAAAGATTTTCAAAGACCTCCAA
Found at i:15872894 original size:22 final size:22
Alignment explanation
Indices: 15872869--15872930 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 22
15872859 AGATTTTTTA
15872869 ATAATCTAAAAGTCCTCTAAGC
1 ATAATCTAAAAGTCCTCTAAGC
* * * **
15872891 ATAATTTTAAAGTCTTCCGAGC
1 ATAATCTAAAAGTCCTCTAAGC
*
15872913 ACAATC-ACAAAGTCCTCT
1 ATAATCTA-AAAGTCCTCT
15872931 TAGTACATTC
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (22 bp):
ATAATCTAAAAGTCCTCTAAGC
Found at i:15875409 original size:21 final size:21
Alignment explanation
Indices: 15875380--15875444 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 21
15875370 ATGCATTTTT
*
15875380 TCTTGAAACCCTAAACCTTAAA
1 TCTT-AAACCCTAAACTTTAAA
15875402 TCTTAAACCCTATAA-TTTAAA
1 TCTTAAACCCTA-AACTTTAAA
* * *
15875423 ACCTAAATCCTAAACTTTAAA
1 TCTTAAACCCTAAACTTTAAA
15875444 T
1 T
15875445 TTTGATCATG
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.06
21 28 0.78
22 6 0.17
ACGTcount: A:0.43, C:0.23, G:0.02, T:0.32
Consensus pattern (21 bp):
TCTTAAACCCTAAACTTTAAA
Found at i:15876073 original size:23 final size:23
Alignment explanation
Indices: 15876025--15876078 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
15876015 TTTATATGTA
* *
15876025 AATAATAATATATTTAATAGAAT
1 AATAATAATATAATTAAAAGAAT
*
15876048 AATAAT-ATGATAATTAAAAGATT
1 AATAATAAT-ATAATTAAAAGAAT
*
15876071 AATGATAA
1 AATAATAA
15876079 AGATAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 2 0.08
23 22 0.88
24 1 0.04
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (23 bp):
AATAATAATATAATTAAAAGAAT
Found at i:15876916 original size:6 final size:6
Alignment explanation
Indices: 15876908--15876940 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
15876898 TCCTTTTCTT
15876908 TTTTG- TTTTGA TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
15876941 TTATGTTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.73
Consensus pattern (6 bp):
TTTTGA
Found at i:15876922 original size:12 final size:13
Alignment explanation
Indices: 15876913--15876954 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
15876903 TTCTTTTTTG
15876913 TTTTGATTTTGA-
1 TTTTGATTTTGAT
15876925 TTTTGATTTTGAT
1 TTTTGATTTTGAT
* *
15876938 TTTTTATGTTGAT
1 TTTTGATTTTGAT
15876951 TTTT
1 TTTT
15876955 ATGTTCTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
12 12 0.44
13 15 0.56
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (13 bp):
TTTTGATTTTGAT
Found at i:15876965 original size:11 final size:12
Alignment explanation
Indices: 15876921--15876959 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
15876911 TGTTTTGATT
* *
15876921 TTGATTTTGATT
1 TTGATTTTTATG
15876933 TTGATTTTTTATG
1 TTGA-TTTTTATG
15876946 TTGATTTTTATG
1 TTGATTTTTATG
15876958 TT
1 TT
15876960 CTTTTTCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.69
Consensus pattern (12 bp):
TTGATTTTTATG
Found at i:15876983 original size:3 final size:3
Alignment explanation
Indices: 15876975--15877011 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
15876965 TCTTATGATG
*
15876975 TTA TTA TTA TTA TTA TTA TTG TTA TT- TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15877012 CTGGTAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
2 4 0.13
3 26 0.87
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15877222 original size:20 final size:20
Alignment explanation
Indices: 15877189--15877237 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
15877179 GATAATTTTA
** *
15877189 AAAAATAATTTTTGCTAAA-
1 AAAAATAAAATTTGATAAAT
15877208 AATAAATAAAATTTGATAAAT
1 AA-AAATAAAATTTGATAAAT
15877229 AAAAATAAA
1 AAAAATAAA
15877238 TTGTTTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.84
21 2 0.08
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (20 bp):
AAAAATAAAATTTGATAAAT
Found at i:15877424 original size:19 final size:20
Alignment explanation
Indices: 15877387--15877428 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
15877377 AAGATTGATT
*
15877387 TAAACAATGTAAAACAATAA
1 TAAAAAATGTAAAACAATAA
*
15877407 TAAAAAATG-AAAATAATAA
1 TAAAAAATGTAAAACAATAA
15877426 TAA
1 TAA
15877429 TTGATATCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.21
Consensus pattern (20 bp):
TAAAAAATGTAAAACAATAA
Found at i:15889836 original size:17 final size:18
Alignment explanation
Indices: 15889797--15889843 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
15889787 TTCAAAAGAA
*
15889797 AAAATAAAAAAATTAAAT
1 AAAATGAAAAAATTAAAT
* *
15889815 GAAATGAAAAAA-TAGAT
1 AAAATGAAAAAATTAAAT
15889832 AAAATGAAAAAA
1 AAAATGAAAAAA
15889844 AAAAAAACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (18 bp):
AAAATGAAAAAATTAAAT
Found at i:15889844 original size:18 final size:19
Alignment explanation
Indices: 15889797--15889844 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
15889787 TTCAAAAGAA
15889797 AAAAT-AAAAAAATTAAAT
1 AAAATGAAAAAAATTAAAT
* *
15889815 GAAATG-AAAAAA-TAGAT
1 AAAATGAAAAAAATTAAAT
15889832 AAAATGAAAAAAA
1 AAAATGAAAAAAA
15889845 AAAAAACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (19 bp):
AAAATGAAAAAAATTAAAT
Found at i:15894752 original size:14 final size:14
Alignment explanation
Indices: 15894733--15894759 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15894723 GTGTGCTTTT
15894733 AATGTTTTTGTTTG
1 AATGTTTTTGTTTG
15894747 AATGTTTTTGTTT
1 AATGTTTTTGTTT
15894760 TTAGGGATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.19, T:0.67
Consensus pattern (14 bp):
AATGTTTTTGTTTG
Found at i:15897201 original size:23 final size:23
Alignment explanation
Indices: 15897174--15897217 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
15897164 TCTTGTTTAC
15897174 AATC-TTTAATTCTTTTACTTTGA
1 AATCTTTTAATTC-TTTACTTTGA
15897197 AATCTTTTAATTCTTTACTTT
1 AATCTTTTAATTCTTTACTTT
15897218 AGGATTAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.25, C:0.14, G:0.02, T:0.59
Consensus pattern (23 bp):
AATCTTTTAATTCTTTACTTTGA
Found at i:15897920 original size:20 final size:20
Alignment explanation
Indices: 15897872--15897921 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
15897862 TTGGATTATT
* *
15897872 GCATATACATCATTTAATAG
1 GCATATGCATCATTTAAGAG
15897892 GCATATGCATCATTTAAGAG
1 GCATATGCATCATTTAAGAG
*
15897912 GCATTTGCAT
1 GCATATGCAT
15897922 TATTATCATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (20 bp):
GCATATGCATCATTTAAGAG
Found at i:15898219 original size:22 final size:22
Alignment explanation
Indices: 15898194--15898316 Score: 65
Period size: 22 Copynumber: 5.4 Consensus size: 22
15898184 AATTTATCAA
15898194 ATGTGAATCTTGAAAATTTTGG
1 ATGTGAATCTTGAAAATTTTGG
* *** *
15898216 ATGTGAAACCCCAAAATTTTCTGA
1 ATGTGAATCTTGAAAA-TTT-TGG
*
15898240 ATGAGAA-CTT-ATGAAATTTTGG
1 ATGTGAATCTTGA--AAATTTTGG
* * *
15898262 ATGTGAAAC-AGTAAAATTTTTCAG
1 ATGTGAATCTTG-AAAA-TTTT-GG
15898286 ATGTGAATCTTTG-AAATTTTGG
1 ATGTGAATC-TTGAAAATTTTGG
15898308 ATGTGAATC
1 ATGTGAATC
15898317 CCCAAGTTTT
Statistics
Matches: 75, Mismatches: 15, Indels: 22
0.67 0.13 0.20
Matches are distributed among these distances:
22 34 0.45
23 16 0.21
24 24 0.32
26 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.37
Consensus pattern (22 bp):
ATGTGAATCTTGAAAATTTTGG
Found at i:15898328 original size:46 final size:46
Alignment explanation
Indices: 15898183--15898327 Score: 154
Period size: 46 Copynumber: 3.2 Consensus size: 46
15898173 TGAGTCTCTT
*
15898183 AAATTTATCA-AATGTGAATC-TTGAAAATTTTGGATGTGAAACCCC
1 AAATTTTTCAGAATGTGAATCTTTG-AAATTTTGGATGTGAAACCCC
* * * ***
15898228 AAAATTTTCTGAATGAGAA-CTTATGAAATTTTGGATGTGAAACAGTA
1 AAATTTTTCAGAATGTGAATCTT-TGAAATTTTGGATGTGAAAC-CCC
*
15898275 AAATTTTTCAG-ATGTGAATCTTTGAAATTTTGGATGTGAATCCCC
1 AAATTTTTCAGAATGTGAATCTTTGAAATTTTGGATGTGAAACCCC
*
15898320 AAGTTTTT
1 AAATTTTT
15898328 TGAATGAAAA
Statistics
Matches: 80, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
45 15 0.19
46 51 0.64
47 14 0.17
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.37
Consensus pattern (46 bp):
AAATTTTTCAGAATGTGAATCTTTGAAATTTTGGATGTGAAACCCC
Found at i:15898839 original size:18 final size:18
Alignment explanation
Indices: 15898615--15898854 Score: 101
Period size: 18 Copynumber: 13.4 Consensus size: 18
15898605 ATTTGAATTC
*
15898615 TTGTGAAT-ATGAAATCT
1 TTGTGAATCTTGAAATCT
** * * *
15898632 TTACGAATCTAGGAATCA
1 TTGTGAATCTTGAAATCT
* *
15898650 TTGAGAATCTTGAAACCT
1 TTGTGAATCTTGAAATCT
* *
15898668 TTATGAATCTTGGAATCT
1 TTGTGAATCTTGAAATCT
** * ****
15898686 TTGCAAATCTAGGGCCCT
1 TTGTGAATCTTGAAATCT
*
15898704 TTGCGAATCTT-AAATCT
1 TTGTGAATCTTGAAATCT
* * * *
15898721 TTGAGAACCTTAAAACCT
1 TTGTGAATCTTGAAATCT
*** * *
15898739 TTACAAATTTTGGAATCT
1 TTGTGAATCTTGAAATCT
* * *
15898757 TTGTCAATCTCAGAACT-T
1 TTGTGAATCT-TGAAATCT
* * *
15898775 TTGTGAAACTTGGAACCT
1 TTGTGAATCTTGAAATCT
* *
15898793 TTGTGAAACTTTG-AGTCT
1 TTGTGAATC-TTGAAATCT
15898811 TTGTGAATCTTGAAATCT
1 TTGTGAATCTTGAAATCT
*
15898829 TTGTGATTCTTGAAATCT
1 TTGTGAATCTTGAAATCT
*
15898847 TTGAGAAT
1 TTGTGAAT
15898855 TTTAGGATCT
Statistics
Matches: 157, Mismatches: 60, Indels: 11
0.69 0.26 0.05
Matches are distributed among these distances:
17 22 0.14
18 129 0.82
19 6 0.04
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (18 bp):
TTGTGAATCTTGAAATCT
Found at i:15898932 original size:18 final size:17
Alignment explanation
Indices: 15898911--15899009 Score: 65
Period size: 17 Copynumber: 5.5 Consensus size: 17
15898901 TTTACGGAAC
15898911 TTGAATCTTTGGTGAATT
1 TTGAATCTTT-GTGAATT
* * **
15898929 TTGAATATTTGAGAAAC
1 TTGAATCTTTGTGAATT
15898946 TTGAATCTTT-TACGAATTT
1 TTGAATCTTTGT--GAA-TT
**
15898965 TTGAATCTTTGTGAAAC
1 TTGAATCTTTGTGAATT
*
15898982 TTAAATCATTTGGTGAATTT
1 TTGAATC-TTT-GTGAA-TT
15899002 TTGAATCT
1 TTGAATCT
15899010 CTGAATCTTT
Statistics
Matches: 60, Mismatches: 14, Indels: 13
0.69 0.16 0.15
Matches are distributed among these distances:
17 19 0.32
18 18 0.30
19 16 0.27
20 7 0.12
ACGTcount: A:0.29, C:0.08, G:0.16, T:0.46
Consensus pattern (17 bp):
TTGAATCTTTGTGAATT
Found at i:15898967 original size:36 final size:36
Alignment explanation
Indices: 15898908--15899007 Score: 130
Period size: 36 Copynumber: 2.8 Consensus size: 36
15898898 ACCTTTACGG
15898908 AACTTGAATCTTTGGTGAA-TTTTGAATATTTGAGA
1 AACTTGAATCTTTGGTGAATTTTTGAATATTTGAGA
*** * *
15898943 AACTTGAATCTTTTACGAATTTTTGAATCTTTGTGA
1 AACTTGAATCTTTGGTGAATTTTTGAATATTTGAGA
*
15898979 AACTTAAATCATTTGGTGAATTTTTGAAT
1 AACTTGAATC-TTTGGTGAATTTTTGAAT
15899008 CTCTGAATCT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
35 16 0.30
36 23 0.43
37 15 0.28
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (36 bp):
AACTTGAATCTTTGGTGAATTTTTGAATATTTGAGA
Found at i:15899215 original size:22 final size:23
Alignment explanation
Indices: 15899167--15899215 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
15899157 AGTTAATGAC
*
15899167 GAACCCTTGAATTTCCAAATTGT
1 GAACCCTTGAATTTCCAAATTGA
* * *
15899190 GAACCTTTGGATTT-CAAGTTGA
1 GAACCCTTGAATTTCCAAATTGA
15899212 GAAC
1 GAAC
15899216 TTTTTGTGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (23 bp):
GAACCCTTGAATTTCCAAATTGA
Found at i:15901773 original size:20 final size:19
Alignment explanation
Indices: 15901718--15901776 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 19
15901708 TTACACAGGC
*
15901718 AATATAAAGAAAAAAAAAT
1 AATATAAACAAAAAAAAAT
*
15901737 ACATGTAAACAATAAAAAACAT
1 A-ATATAAACAA-AAAAAA-AT
15901759 AATATAAA-AACAAAAAAA
1 AATATAAACAA-AAAAAAA
15901777 ACGTCAGACA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 2 0.06
20 16 0.48
21 12 0.36
22 3 0.09
ACGTcount: A:0.75, C:0.07, G:0.03, T:0.15
Consensus pattern (19 bp):
AATATAAACAAAAAAAAAT
Found at i:15903141 original size:25 final size:23
Alignment explanation
Indices: 15903097--15903143 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
15903087 ATTACATATA
* *
15903097 AATTATATATTTTTATATATTAT
1 AATTATATATTATTAAATATTAT
15903120 AATTATATATTCAATTAAATATTA
1 AATTATATATT--ATTAAATATTA
15903144 AGATAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 11 0.55
25 9 0.45
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
AATTATATATTATTAAATATTAT
Found at i:15903434 original size:23 final size:23
Alignment explanation
Indices: 15903405--15903452 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
15903395 ATTAAAAAAT
*
15903405 ATAAAAAGTTAAAAAGAAAATTGA
1 ATAAAAAGGTAAAAA-AAAATTGA
*
15903429 ATAAAAAGGTAAGAAAAAATTGA
1 ATAAAAAGGTAAAAAAAAATTGA
15903452 A
1 A
15903453 GCGGATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.19
Consensus pattern (23 bp):
ATAAAAAGGTAAAAAAAAATTGA
Found at i:15904412 original size:89 final size:89
Alignment explanation
Indices: 15904260--15904440 Score: 344
Period size: 89 Copynumber: 2.0 Consensus size: 89
15904250 TTTACTACCA
* *
15904260 AATTATAGGGTACAATATTTGGTTGATAGCCCTCAAATATATATGACACTGTCGAGGTTTCCGCC
1 AATTATAGGGTACAATATTTGGCTGATAGCCCTCAAATATATATGACACTGTCGAGGTCTCCGCC
15904325 TATTTTACTTGAACAGAAAACATG
66 TATTTTACTTGAACAGAAAACATG
15904349 AATTATAGGGTACAATATTTGGCTGATAGCCCTCAAATATATATGACACTGTCGAGGTCTCCGCC
1 AATTATAGGGTACAATATTTGGCTGATAGCCCTCAAATATATATGACACTGTCGAGGTCTCCGCC
15904414 TATTTTACTTGAACAGAAAACATG
66 TATTTTACTTGAACAGAAAACATG
15904438 AAT
1 AAT
15904441 CCTTCAGCAC
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 90 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (89 bp):
AATTATAGGGTACAATATTTGGCTGATAGCCCTCAAATATATATGACACTGTCGAGGTCTCCGCC
TATTTTACTTGAACAGAAAACATG
Found at i:15908628 original size:33 final size:31
Alignment explanation
Indices: 15908565--15908632 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 31
15908555 ATGGCAAGAA
*
15908565 AAAAATAAAATAAAATATTTATAATTTAATTGT
1 AAAAATAAAATAAAATATATATAA-TTAATT-T
15908598 AAAAATAAAATAAAATTATATATTAA-TAATTT
1 AAAAATAAAATAAAA-TATATA-TAATTAATTT
15908630 AAA
1 AAA
15908633 TATTGATCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
32 4 0.12
33 20 0.62
34 5 0.16
35 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (31 bp):
AAAAATAAAATAAAATATATATAATTAATTT
Found at i:15909609 original size:23 final size:23
Alignment explanation
Indices: 15909579--15909628 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
15909569 GCAAGTAGTT
15909579 CAAAAATGATAAAACTGTAGGAC
1 CAAAAATGATAAAACTGTAGGAC
15909602 CAAAAATGATAAAACTGTAGGAC
1 CAAAAATGATAAAACTGTAGGAC
15909625 CAAA
1 CAAA
15909629 TATCCATAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.54, C:0.14, G:0.16, T:0.16
Consensus pattern (23 bp):
CAAAAATGATAAAACTGTAGGAC
Found at i:15911018 original size:21 final size:21
Alignment explanation
Indices: 15910980--15911020 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15910970 GTTTTATGTT
*
15910980 TTATTTTGATTTTTTAGCTTC
1 TTATTTTGATTTTCTAGCTTC
15911001 TTATTTTG-TTTTACTAGCTT
1 TTATTTTGATTTT-CTAGCTT
15911021 ATTTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.15, C:0.10, G:0.10, T:0.66
Consensus pattern (21 bp):
TTATTTTGATTTTCTAGCTTC
Found at i:15912396 original size:23 final size:23
Alignment explanation
Indices: 15912362--15912406 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
15912352 TATATATAGA
*
15912362 TAGTTCCTTTTTTATTAATTTTG
1 TAGTTCCATTTTTATTAATTTTG
15912385 TAGTTCCATTTTTATTAATTTT
1 TAGTTCCATTTTTATTAATTTT
15912407 ACATATGTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.09, G:0.07, T:0.64
Consensus pattern (23 bp):
TAGTTCCATTTTTATTAATTTTG
Found at i:15918449 original size:12 final size:12
Alignment explanation
Indices: 15918427--15918508 Score: 60
Period size: 13 Copynumber: 6.3 Consensus size: 12
15918417 AGGGTTTGAA
15918427 GGTT-GGTTTAG
1 GGTTAGGTTTAG
15918438 GGTCTAGG-TTAG
1 GGT-TAGGTTTAG
*
15918450 GATTTAGGTTTAG
1 G-GTTAGGTTTAG
15918463 GGTTAGGGTGTTAG
1 GGTTA-GGT-TTAG
*
15918477 AGCTTAGGTTTTCAG
1 -GGTTAGG-TTT-AG
15918492 GGTTAGGGTTTAG
1 GGTTA-GGTTTAG
15918505 GGTT
1 GGTT
15918509 TAGGGTTTGG
Statistics
Matches: 57, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
11 3 0.05
12 13 0.23
13 17 0.30
14 15 0.26
15 9 0.16
ACGTcount: A:0.16, C:0.04, G:0.40, T:0.40
Consensus pattern (12 bp):
GGTTAGGTTTAG
Found at i:15918455 original size:19 final size:19
Alignment explanation
Indices: 15918412--15918457 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
15918402 ATGAATGATT
*
15918412 GATTTAGGGTTTGAAGGTTG
1 GATTTAGGGTCT-AAGGTTG
15918432 G-TTTAGGGTCT-AGGTTAG
1 GATTTAGGGTCTAAGGTT-G
15918450 GATTTAGG
1 GATTTAGG
15918458 TTTAGGGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
17 5 0.22
18 2 0.09
19 15 0.65
20 1 0.04
ACGTcount: A:0.20, C:0.02, G:0.39, T:0.39
Consensus pattern (19 bp):
GATTTAGGGTCTAAGGTTG
Found at i:15918496 original size:21 final size:20
Alignment explanation
Indices: 15918459--15918515 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
15918449 GGATTTAGGT
15918459 TTAGGG-TTAGGGTGTTAGAGC
1 TTAGGGTTTA-GG-GTTAGAGC
* * *
15918480 TTAGGTTTTCAGGGTTAGGGT
1 TTAGGGTTT-AGGGTTAGAGC
15918501 TTAGGGTTTAGGGTT
1 TTAGGGTTTAGGGTT
15918516 TGGATTTAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
20 6 0.20
21 19 0.63
22 4 0.13
23 1 0.03
ACGTcount: A:0.16, C:0.04, G:0.40, T:0.40
Consensus pattern (20 bp):
TTAGGGTTTAGGGTTAGAGC
Found at i:15918523 original size:13 final size:14
Alignment explanation
Indices: 15918446--15918529 Score: 52
Period size: 13 Copynumber: 6.1 Consensus size: 14
15918436 AGGGTCTAGG
15918446 TTAGGATTTA-GGT
1 TTAGGATTTAGGGT
*
15918459 TTAGG-GTTAGGGT
1 TTAGGATTTAGGGT
* *
15918472 GTTA-GAGCTTAGGTT
1 -TTAGGA-TTTAGGGT
*
15918487 TTCAGG-GTTAGGGT
1 TT-AGGATTTAGGGT
*
15918501 TTAGGGTTTAGGGT
1 TTAGGATTTAGGGT
*
15918515 TT-GGATTTAAGGT
1 TTAGGATTTAGGGT
15918528 TT
1 TT
15918530 CAGGTTTGGG
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
12 3 0.05
13 23 0.41
14 22 0.39
15 7 0.12
16 1 0.02
ACGTcount: A:0.18, C:0.02, G:0.37, T:0.43
Consensus pattern (14 bp):
TTAGGATTTAGGGT
Found at i:15921142 original size:48 final size:47
Alignment explanation
Indices: 15921072--15921254 Score: 149
Period size: 48 Copynumber: 3.8 Consensus size: 47
15921062 AACCAATTTG
* * **
15921072 AAAAGGGCTTCTGTGACCATAGGCTACAAACTTTAAAAATCTATCCAA
1 AAAAGGGCTCCTATGAAAATAGG-TACAAACTTTAAAAATCTATCCAA
**
15921120 AAAAGGGCTCCTATGAAAATAGGTA-ATGAACTTTAAAAATCTAT-CTT
1 AAAAGGGCTCCTATGAAAATAGGTACA--AACTTTAAAAATCTATCCAA
* * * * * *
15921167 GAAAGGCCTCTTGTGAAAATAGGTAACAAACTTTAAAGAAATCTATCTAG
1 AAAAGGGCTCCTATGAAAATAGGT-ACAAACTTT-AA-AAATCTATCCAA
* *
15921217 AAAAGGGCTCCTAT-AAAA-AGGCAACAGACTTTAAAAAT
1 AAAAGGGCTCCTATGAAAATAGG-TACAAACTTTAAAAAT
15921255 TTGTTTGCAA
Statistics
Matches: 108, Mismatches: 19, Indels: 18
0.74 0.13 0.12
Matches are distributed among these distances:
46 5 0.05
47 31 0.29
48 49 0.45
49 13 0.12
50 10 0.09
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (47 bp):
AAAAGGGCTCCTATGAAAATAGGTACAAACTTTAAAAATCTATCCAA
Found at i:15921190 original size:47 final size:47
Alignment explanation
Indices: 15921097--15921455 Score: 182
Period size: 47 Copynumber: 7.6 Consensus size: 47
15921087 ACCATAGGCT
* * *
15921097 ACAAACTTTAAAAATCTATCCAAAAAAGGGCTCCTATGAAAATAGGTA
1 ACAAACTTTAAAAATCTAT-CTAGAAAGGCCTCCTATGAAAATAGGTA
** * * *
15921145 ATGAACTTTAAAAATCTATCTTGAAAGGCCTCTTGTGAAAATAGGTA
1 ACAAACTTTAAAAATCTATCTAGAAAGGCCTCCTATGAAAATAGGTA
* *
15921192 ACAAACTTTAAAGAAATCTATCTAGAAAAGGGCTCCTAT-AAAA-AGGCA
1 ACAAACTTT-AA-AAATCTATCTAG-AAAGGCCTCCTATGAAAATAGGTA
* * * * *
15921240 ACAGACTTTAAAAATTTGT-TTGCAAAGG-CTCCTATG-AAATA-GCA
1 ACAAACTTTAAAAATCTATCTAG-AAAGGCCTCCTATGAAAATAGGTA
* * * ** *
15921284 ACAAAATTTAGAAAGAATCTATTTGGAAAGGGTTCCTAT-AAAATAGGCA
1 ACAAACTTT--AAA-AATCTATCTAGAAAGGCCTCCTATGAAAATAGGTA
** * * * * *
15921333 ATGAGCTTTGAAAAATTTATCTGAAAAAGG-CTTCTATG-AAATAGGCA
1 ACAAACTTT-AAAAATCTATCT-AGAAAGGCCTCCTATGAAAATAGGTA
* * * * * * *
15921380 ACGAATTTTATAAAAACTATTTGGAAAAGG-GTCTTATG-AAATAGGTA
1 ACAAACTTTA-AAAATCTATCTAG-AAAGGCCTCCTATGAAAATAGGTA
* * *
15921427 ACGAACTTTAAAAAATCTATTTGGAAAGG
1 ACAAACTTT-AAAAATCTATCTAGAAAGG
15921456 TTGATCTGGT
Statistics
Matches: 244, Mismatches: 50, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
44 20 0.08
45 8 0.03
46 15 0.06
47 114 0.47
48 54 0.22
49 23 0.09
50 10 0.04
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.28
Consensus pattern (47 bp):
ACAAACTTTAAAAATCTATCTAGAAAGGCCTCCTATGAAAATAGGTA
Found at i:15921387 original size:95 final size:92
Alignment explanation
Indices: 15921121--15921440 Score: 285
Period size: 94 Copynumber: 3.4 Consensus size: 92
15921111 TCTATCCAAA
* * * *
15921121 AAAGGGCTCCTATGAAAATAGGTAATGAACTTTAAAAATCTATCTTGAAAGGCCTCTTGTGAAAA
1 AAAGGGCTCCTAT-AAAATAGGCAATGAACTTTAAAAATTTATC-TGAAAGGCTTC-TATG-AAA
* * *
15921186 TAGGTAACAAACTTT-AAAGAAATCTATCTAGA
62 TAGGCAACAAACTTTAAAAG-AATCTAT-TTGG
* * * *
15921218 AAAGGGCTCCTATAAAA-AGGCAA-CAGACTTTAAAAATTTGTTTGCAAAGGCTCCTATGAAATA
1 AAAGGGCTCCTATAAAATAGGCAATGA-ACTTTAAAAATTTATCTG-AAAGGCTTCTATGAAATA
*
15921281 -GCAACAAAATTTAGAAAGAATCTATTTGG
64 GGCAACAAACTTTA-AAAGAATCTATTTGG
* *
15921310 AAAGGGTTCCTATAAAATAGGCAATGAGCTTTGAAAAATTTATCTGAAAAAGGCTTCTATGAAAT
1 AAAGGGCTCCTATAAAATAGGCAATGAACTTT-AAAAATTTATCTG--AAAGGCTTCTATGAAAT
* *
15921375 AGGCAACGAATTTTATAAA-AA-CTATTTGG
63 AGGCAACAAACTTTA-AAAGAATCTATTTGG
* * * *
15921404 AAAAGGG-TCTTATGAAATAGGTAACGAACTTTAAAAA
1 -AAAGGGCTCCTATAAAATAGGCAATGAACTTTAAAAA
15921441 ATCTATTTGG
Statistics
Matches: 186, Mismatches: 27, Indels: 24
0.78 0.11 0.10
Matches are distributed among these distances:
92 28 0.15
93 27 0.15
94 50 0.27
95 50 0.27
96 18 0.10
97 13 0.07
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (92 bp):
AAAGGGCTCCTATAAAATAGGCAATGAACTTTAAAAATTTATCTGAAAGGCTTCTATGAAATAGG
CAACAAACTTTAAAAGAATCTATTTGG
Found at i:15921442 original size:94 final size:92
Alignment explanation
Indices: 15921120--15921440 Score: 294
Period size: 95 Copynumber: 3.4 Consensus size: 92
15921110 ATCTATCCAA
* * * * *
15921120 AAAAGGGCTCCTATGAAAATAGGTAATGAACTTTAAAAATCTATCTTGAAAGGCCTCTTGTGAAA
1 AAAAGGGCTCCTATG-AAATAGGCAACGAACTTTAAAAATTTATC-TGAAAGGCTTC-TATG-AA
* * * *
15921185 ATAGGTAACAAACTTTAAAGAAATCTATCTAG
62 ATAGGCAACAAAATTTAAA-AAATCTATTTGG
* * * *
15921217 AAAAGGGCTCCTAT-AAAAAGGCAAC-AGACTTTAAAAATTTGTTTGCAAAGGCTCCTATGAAAT
1 AAAAGGGCTCCTATGAAATAGGCAACGA-ACTTTAAAAATTTATCTG-AAAGGCTTCTATGAAAT
15921280 A-GCAACAAAATTTAGAAAGAATCTATTTGG
64 AGGCAACAAAATTTA-AAA-AATCTATTTGG
* * * *
15921310 -AAAGGGTTCCTATAAAATAGGCAATGAGCTTTGAAAAATTTATCTGAAAAAGGCTTCTATGAAA
1 AAAAGGGCTCCTATGAAATAGGCAACGAACTTT-AAAAATTTATCTG--AAAGGCTTCTATGAAA
* *
15921374 TAGGCAACGAATTTTATAAAAA-CTATTTGG
63 TAGGCAACAAAATTTA-AAAAATCTATTTGG
* *
15921404 AAAAGGG-TCTTATGAAATAGGTAACGAACTTTAAAAA
1 AAAAGGGCTCCTATGAAATAGGCAACGAACTTTAAAAA
15921441 ATCTATTTGG
Statistics
Matches: 185, Mismatches: 29, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
92 24 0.13
93 34 0.18
94 46 0.25
95 53 0.29
96 14 0.08
97 14 0.08
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.27
Consensus pattern (92 bp):
AAAAGGGCTCCTATGAAATAGGCAACGAACTTTAAAAATTTATCTGAAAGGCTTCTATGAAATAG
GCAACAAAATTTAAAAAATCTATTTGG
Found at i:15921912 original size:78 final size:77
Alignment explanation
Indices: 15921772--15921944 Score: 251
Period size: 78 Copynumber: 2.2 Consensus size: 77
15921762 AAGGTCCTTT
* *
15921772 AAAAGTTTGAGATTCACACCAAAAGACTAGGATTCGCACCAACACCAAAAAAGCTGAGGTTCACA
1 AAAAGTTTGGGATTCACACCAAAAGACTAGAATTCGCACCAACACCAAAAAAGCTGAGGTTCACA
15921837 TTAAGATTTTTC
66 TTAAGATTTTTC
* *
15921849 AAAAGTTCGGGATTCACACCAAAAAGGCTAAGAATT-GCACCAACACCAAAAAAGCT-AGAGTTC
1 AAAAGTTTGGGATTCACACC-AAAAGACT-AGAATTCGCACCAACACCAAAAAAGCTGAG-GTTC
* *
15921912 ATATTAGGATTTTTC
63 ACATTAAGATTTTTC
15921927 AAAAGTTTGGGATTCACA
1 AAAAGTTTGGGATTCACA
15921945 TTGAAAAAGG
Statistics
Matches: 86, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
77 20 0.23
78 61 0.71
79 5 0.06
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (77 bp):
AAAAGTTTGGGATTCACACCAAAAGACTAGAATTCGCACCAACACCAAAAAAGCTGAGGTTCACA
TTAAGATTTTTC
Found at i:15921996 original size:53 final size:53
Alignment explanation
Indices: 15921924--15922097 Score: 183
Period size: 53 Copynumber: 3.3 Consensus size: 53
15921914 ATTAGGATTT
* * *
15921924 TTCAAAA-GTTTGGGATTCACATTGAAAAAGGTTGGGATTTATACCAAAATTC
1 TTCAAAAGGTTTAGGATTCACATTGAAAAAGGTTGGGATTTATACTAGAATTC
* * * *
15921976 TTCAAAAGGTTTGGGATTCACATTG--AAAGGTTGGGATTCACATTAGAATTC
1 TTCAAAAGGTTTAGGATTCACATTGAAAAAGGTTGGGATTTATACTAGAATTC
* * * ** * * *
15922027 TTCAAAAAGTTCAAGATTCACATAAAAAAAGGCTAGGATTTCTACTAGAATTC
1 TTCAAAAGGTTTAGGATTCACATTGAAAAAGGTTGGGATTTATACTAGAATTC
*
15922080 TTCAAAAGATTTAGGATT
1 TTCAAAAGGTTTAGGATT
15922098 TACACCAAAA
Statistics
Matches: 98, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
51 40 0.41
52 7 0.07
53 51 0.52
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (53 bp):
TTCAAAAGGTTTAGGATTCACATTGAAAAAGGTTGGGATTTATACTAGAATTC
Found at i:15922011 original size:20 final size:21
Alignment explanation
Indices: 15921980--15922019 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
15921970 AAATTCTTCA
15921980 AAAGGTTTGGGATTCACATTG
1 AAAGGTTTGGGATTCACATTG
15922001 AAAGG-TTGGGATTCACATT
1 AAAGGTTTGGGATTCACATT
15922020 AGAATTCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.33
Consensus pattern (21 bp):
AAAGGTTTGGGATTCACATTG
Found at i:15922146 original size:31 final size:30
Alignment explanation
Indices: 15922075--15922147 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
15922065 TTTCTACTAG
* *
15922075 AATTCTTCAAAAGATTTAGGATTTACACCA
1 AATTCTTCAAGAGATTTAGGATTCACACCA
* * *
15922105 AAATCTTCAAGAGGTTTGGGATTCACACCA
1 AATTCTTCAAGAGATTTAGGATTCACACCA
*
15922135 TGATTCTTCAAGA
1 -AATTCTTCAAGA
15922148 TTGAAAAATT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
30 25 0.71
31 10 0.29
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32
Consensus pattern (30 bp):
AATTCTTCAAGAGATTTAGGATTCACACCA
Found at i:15922406 original size:40 final size:41
Alignment explanation
Indices: 15922366--15922538 Score: 136
Period size: 41 Copynumber: 4.2 Consensus size: 41
15922356 GAAAGGATGG
* *
15922366 TTCATAG-TTGGAAAACTTTAGATTCATAACAAAGAAATGG
1 TTCATAGTTTGGAAAACTTTAGATTCACAACAAAGAAATGA
** * * *
15922406 TTCATAGTTTGGAGGACTTAAGATTCAGAACAAAGCAATGA
1 TTCATAGTTTGGAAAACTTTAGATTCACAACAAAGAAATGA
* * * * * * *
15922447 TTCACA-ATT-GAAAGATTTTGGATTCACAACAGAGTAATAA
1 TTCATAGTTTGGAAA-ACTTTAGATTCACAACAAAGAAATGA
* * * *
15922487 TTCATAGTTTGGAAAACTCTGGATTCACAACTAAGACAACGA
1 TTCATAGTTTGGAAAACTTTAGATTCACAACAAAGA-AATGA
*
15922529 TTCACAGTTT
1 TTCATAGTTT
15922539 TTAAAGATTC
Statistics
Matches: 101, Mismatches: 27, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
39 2 0.02
40 33 0.33
41 50 0.50
42 16 0.16
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (41 bp):
TTCATAGTTTGGAAAACTTTAGATTCACAACAAAGAAATGA
Found at i:15922608 original size:37 final size:36
Alignment explanation
Indices: 15922555--15922663 Score: 116
Period size: 37 Copynumber: 2.9 Consensus size: 36
15922545 ATTCATAAGC
*
15922555 ATTAAAGATTTGTAAATTTCAAAG-TTT-TAGAAGAGGCG
1 ATTAAAGA-TTATAAATTTCAAAGATTTGT-G-AGAGG-G
15922593 -TTAAAGACTTATAAATTTCAAAGATTTGTGAGAGGG
1 ATTAAAGA-TTATAAATTTCAAAGATTTGTGAGAGGG
* *
15922629 ATTAAAGATTCATAAATTGCAAAGATTTGTAAGAG
1 ATTAAAGATT-ATAAATTTCAAAGATTTGTGAGAG
15922664 TTAAAAGTTT
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
36 3 0.05
37 55 0.87
38 4 0.06
39 1 0.02
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (36 bp):
ATTAAAGATTATAAATTTCAAAGATTTGTGAGAGGG
Found at i:15923722 original size:301 final size:301
Alignment explanation
Indices: 15923160--15923751 Score: 911
Period size: 301 Copynumber: 2.0 Consensus size: 301
15923150 GCTTTATGAA
* * *
15923160 TCTCTTGAGAATTGGCGTTCCCTATTAAAAATGAAAAAGATAAAAATTTTCTTTTCGACTAGATT
1 TCTCTTAAGAATTGGCATTCCCTATTAAAAATGAAAAAGATAAAAATTTTCTTTTCAACTAGATT
* *
15923225 GGACGTAAAGGTTTTGGTTTATTCAAAGAGACTTCATTACTTGAAAGGGATAAAAAAGGTGTGTA
66 GGACGTAAAGGTTTTGGTTCATTCAAAGAGACTTCATTACTTGAAAGGGATAAAAAAGGTGTATA
* *
15923290 CTTTTTAATATAGGCTTACAAATGAAATATAAGTTTTTTCTAAAAAGATGGATCCCATGAAAATC
131 CTTTTCAATATAGGCTCACAAATGAAATATAAGTTTTTTCTAAAAAGATGGATCCCATGAAAATC
** * ** *
15923355 AAACATGTTTGGCACATTCTTTTTAGCATTCAAATGTGACATTTTGATCGACGTGTAGGTAGTTA
196 AAACATGTTCAGCACATTCTTTTTAGCATTCAAATGTGACATTTTGATAGACGTCAAGGCAGTTA
*
15923420 TGGTGGGCTCAAAGTTTTGGAAAGTCATTTGGTTTTAAGAG
261 TGGTCGGCTCAAAGTTTTGGAAAGTCATTTGGTTTTAAGAG
* * *
15923461 TCTCTTAAGAATTGTCATTCCCTATTAGAAAT-AAAATAGGTAAAAATTTTCTTTTCAACTAGAT
1 TCTCTTAAGAATTGGCATTCCCTATTAAAAATGAAAA-AGATAAAAATTTTCTTTTCAACTAGAT
* * * * *
15923525 TGGATGTGAAGGTTTTTGGTTCATTCAAGGAGACTTCATTACTTGAAAAGGGATAAAAGAGTTGT
65 TGGACGTAAAGG-TTTTGGTTCATTCAAAGAGACTTCATTACTTG-AAAGGGATAAAAAAGGTGT
15923590 ATACTTTTCAATATAGGCTCACAAATGAAATATAAGTTTTTTCT-AAAAGATGGATCCCATGAAA
128 ATACTTTTCAATATAGGCTCACAAATGAAATATAAGTTTTTTCTAAAAAGATGGATCCCATGAAA
* * *
15923654 ATCAAACATGTTCAGTATATT-TTTTTAGCATTCAAATGTGACATTTTGATAGATGTCAAGGCAG
193 ATCAAACATGTTCAGCACATTCTTTTTAGCATTCAAATGTGACATTTTGATAGACGTCAAGGCAG
15923718 TTATGGTCGGCTCAAAGTTTTGGAAAGTCATTTG
258 TTATGGTCGGCTCAAAGTTTTGGAAAGTCATTTG
15923752 AGGAAAAGGA
Statistics
Matches: 263, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
300 4 0.02
301 134 0.51
302 67 0.25
303 58 0.22
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.36
Consensus pattern (301 bp):
TCTCTTAAGAATTGGCATTCCCTATTAAAAATGAAAAAGATAAAAATTTTCTTTTCAACTAGATT
GGACGTAAAGGTTTTGGTTCATTCAAAGAGACTTCATTACTTGAAAGGGATAAAAAAGGTGTATA
CTTTTCAATATAGGCTCACAAATGAAATATAAGTTTTTTCTAAAAAGATGGATCCCATGAAAATC
AAACATGTTCAGCACATTCTTTTTAGCATTCAAATGTGACATTTTGATAGACGTCAAGGCAGTTA
TGGTCGGCTCAAAGTTTTGGAAAGTCATTTGGTTTTAAGAG
Found at i:15924348 original size:19 final size:18
Alignment explanation
Indices: 15924324--15924389 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 18
15924314 TAATCATTCA
15924324 TCTTTTTTTTTTGCTTCTT
1 TCTTTTTTTTTT-CTTCTT
15924343 TCTTTTTTTTCTT-TTCTTT
1 TCTTTTTTTT-TTCTTC-TT
*
15924362 TCCTTTTTTTTTTCACTCTT
1 T-CTTTTTTTTTTC-TTCTT
15924382 TCTTTTTT
1 TCTTTTTT
15924390 CTTTGGATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
18 3 0.07
19 22 0.54
20 14 0.34
21 2 0.05
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.79
Consensus pattern (18 bp):
TCTTTTTTTTTTCTTCTT
Found at i:15928756 original size:13 final size:13
Alignment explanation
Indices: 15928735--15928769 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
15928725 TTTTTGTTTC
*
15928735 TTTTGGTTTTTTT
1 TTTTAGTTTTTTT
15928748 TTTTAGTTTTTTT
1 TTTTAGTTTTTTT
*
15928761 TATTAGTTT
1 TTTTAGTTT
15928770 AGTTTAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.09, C:0.00, G:0.11, T:0.80
Consensus pattern (13 bp):
TTTTAGTTTTTTT
Found at i:15928775 original size:23 final size:23
Alignment explanation
Indices: 15928749--15928794 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
15928739 GGTTTTTTTT
15928749 TTTAGT-TTTTTTTATTAGTTTAG
1 TTTAGTATTTTTTT-TTAGTTTAG
*
15928772 TTTAGTATTTTTTTTTTGTTTAG
1 TTTAGTATTTTTTTTTAGTTTAG
15928795 AACAAGGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.15, C:0.00, G:0.13, T:0.72
Consensus pattern (23 bp):
TTTAGTATTTTTTTTTAGTTTAG
Found at i:15929619 original size:25 final size:25
Alignment explanation
Indices: 15929591--15929646 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
15929581 AATATATAAT
*
15929591 AAATGACATAATTTAAATATTG-ATG
1 AAATGACATAATTAAAATA-TGCATG
* *
15929616 AAATGGCATGATTAAAATATGCATG
1 AAATGACATAATTAAAATATGCATG
15929641 AAATGA
1 AAATGA
15929647 TCGAAACTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.48, C:0.05, G:0.16, T:0.30
Consensus pattern (25 bp):
AAATGACATAATTAAAATATGCATG
Found at i:15944471 original size:16 final size:16
Alignment explanation
Indices: 15944450--15944482 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
15944440 GTGAAAGTTC
15944450 TTAATAATTTTAGGGG
1 TTAATAATTTTAGGGG
15944466 TTAATAATTTTAGGGG
1 TTAATAATTTTAGGGG
15944482 T
1 T
15944483 AAAGACCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TTAATAATTTTAGGGG
Found at i:15946341 original size:12 final size:12
Alignment explanation
Indices: 15946311--15946386 Score: 50
Period size: 12 Copynumber: 6.5 Consensus size: 12
15946301 TTGTAATTTG
*
15946311 ATTTTAATTTTA
1 ATTTTGATTTTA
* * *
15946323 GTCTTGATTTTT
1 ATTTTGATTTTA
15946335 ATTTTGATTTTA
1 ATTTTGATTTTA
*
15946347 ATTTAGA-TTTA
1 ATTTTGATTTTA
15946358 GATTTT-A-TTTA
1 -ATTTTGATTTTA
* * *
15946369 GTTTTAATTCTA
1 ATTTTGATTTTA
15946381 ATTTTG
1 ATTTTG
15946387 TGGTGTATTT
Statistics
Matches: 48, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
10 4 0.08
11 10 0.21
12 34 0.71
ACGTcount: A:0.25, C:0.03, G:0.09, T:0.63
Consensus pattern (12 bp):
ATTTTGATTTTA
Found at i:15946369 original size:17 final size:18
Alignment explanation
Indices: 15946335--15946384 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 18
15946325 CTTGATTTTT
*
15946335 ATTTTGATTTTAATTTAG
1 ATTTAGATTTTAATTTAG
15946353 ATTTAGATTTT-ATTTAG
1 ATTTAGATTTTAATTTAG
* *
15946370 TTTTA-ATTCTAATTT
1 ATTTAGATTTTAATTT
15946385 TGTGGTGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 4 0.14
17 14 0.50
18 10 0.36
ACGTcount: A:0.28, C:0.02, G:0.08, T:0.62
Consensus pattern (18 bp):
ATTTAGATTTTAATTTAG
Found at i:15947000 original size:20 final size:20
Alignment explanation
Indices: 15946977--15947015 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
15946967 TATGGAATTT
*
15946977 GATTTGAATTTTTGGGTTTG
1 GATTTAAATTTTTGGGTTTG
15946997 GATTTAAATTTTTGGGTTT
1 GATTTAAATTTTTGGGTTT
15947016 TTTTGGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.56
Consensus pattern (20 bp):
GATTTAAATTTTTGGGTTTG
Found at i:15947146 original size:21 final size:21
Alignment explanation
Indices: 15947122--15947162 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
15947112 GGGCAATTCT
15947122 AGATATTCTTTGAATTTTTTA
1 AGATATTCTTTGAATTTTTTA
15947143 AGATATTCTTTGAATTTTTT
1 AGATATTCTTTGAATTTTTT
15947163 GATGACTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.59
Consensus pattern (21 bp):
AGATATTCTTTGAATTTTTTA
Found at i:15950406 original size:17 final size:19
Alignment explanation
Indices: 15950372--15950407 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
15950362 TATTGTGAAT
15950372 CATCATTATATGCTTTTGC
1 CATCATTATATGCTTTTGC
15950391 CATC-TTATAT-CTTTTGC
1 CATCATTATATGCTTTTGC
15950408 TATACCCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 6 0.35
19 4 0.24
ACGTcount: A:0.19, C:0.22, G:0.08, T:0.50
Consensus pattern (19 bp):
CATCATTATATGCTTTTGC
Found at i:15951120 original size:16 final size:16
Alignment explanation
Indices: 15951101--15951139 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
15951091 AAAATAAATG
**
15951101 AAAGAAAAAAAGGGAA
1 AAAGAAAAAAAAAGAA
15951117 AAAGAAAAAAAAAGAA
1 AAAGAAAAAAAAAGAA
15951133 AAAGAAA
1 AAAGAAA
15951140 TTGAAAGGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAGAAAAAAAAAGAA
Found at i:15951470 original size:17 final size:16
Alignment explanation
Indices: 15951450--15951494 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
15951440 AACACAGTAA
15951450 AAAAAAAAGTAAAAAGT
1 AAAAAAAAG-AAAAAGT
15951467 AAAAAAAAGAAAAAG-
1 AAAAAAAAGAAAAAGT
* *
15951482 AGAAAAAGGAAAA
1 AAAAAAAAGAAAA
15951495 CTTAAACTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 11 0.42
16 6 0.23
17 9 0.35
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (16 bp):
AAAAAAAAGAAAAAGT
Found at i:15957108 original size:56 final size:55
Alignment explanation
Indices: 15956948--15957119 Score: 153
Period size: 57 Copynumber: 3.1 Consensus size: 55
15956938 AATTATAAAA
* * *
15956948 TATATTTTTTCATATATTAT-AATTTCTATTCAATTAAATATTAAGATAAAATATTAT
1 TATATTTTTTCATTTATTATAAATTT-TATTTAATTAAATATT-AGATAAAA-AATAT
* * ** *
15957005 TATATTTTTTAATTAATT-TAAATTTTAAAT-ATTAAATA-TACAT--AAAATAT
1 TATATTTTTTCATTTATTATAAATTTTATTTAATTAAATATTAGATAAAAAATAT
15957055 GT-T-TTTTTTCATTTATTATAAATTTATATTTAATTAAATATCTAGATAAAAAATAAT
1 -TATATTTTTTCATTTATTATAAATTT-TATTTAATTAAATAT-TAGATAAAAAAT-AT
15957112 TATATTTT
1 TATATTTT
15957120 ATTAATTTTA
Statistics
Matches: 90, Mismatches: 13, Indels: 23
0.71 0.10 0.18
Matches are distributed among these distances:
49 12 0.13
50 12 0.13
51 6 0.07
52 8 0.09
53 3 0.03
54 5 0.06
55 8 0.09
56 9 0.10
57 23 0.26
58 4 0.04
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (55 bp):
TATATTTTTTCATTTATTATAAATTTTATTTAATTAAATATTAGATAAAAAATAT
Found at i:15961854 original size:24 final size:23
Alignment explanation
Indices: 15961827--15961878 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
15961817 AAAGGGGAGA
* *
15961827 GAAAGAAAATGAAGAAAGACAAAG
1 GAAAGAAAA-AAAGAAAGAAAAAG
15961851 GAAAAGAAAAAAAGAAAGAAAAAG
1 G-AAAGAAAAAAAGAAAGAAAAAG
15961875 GAAA
1 GAAA
15961879 TTTTGACTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 3 0.12
24 14 0.56
25 8 0.32
ACGTcount: A:0.73, C:0.02, G:0.23, T:0.02
Consensus pattern (23 bp):
GAAAGAAAAAAAGAAAGAAAAAG
Found at i:15970666 original size:40 final size:40
Alignment explanation
Indices: 15970612--15970692 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
15970602 CCAACCTTAG
15970612 AGAGGTTCTTTAAGCTTGCAAAACACTTTAGAAACTTTGT
1 AGAGGTTCTTTAAGCTTGCAAAACACTTTAGAAACTTTGT
15970652 AGAGGTTCTTTAAGCTTGCAAAACACTTTAGAAACTTTGT
1 AGAGGTTCTTTAAGCTTGCAAAACACTTTAGAAACTTTGT
15970692 A
1 A
15970693 TTGTGAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (40 bp):
AGAGGTTCTTTAAGCTTGCAAAACACTTTAGAAACTTTGT
Found at i:15980236 original size:24 final size:24
Alignment explanation
Indices: 15980208--15980285 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
15980198 TAAAGGAGAT
15980208 AAACAGAATTAAGAATGAAAAATA
1 AAACAGAATTAAGAATGAAAAATA
** **
15980232 AAACAAGAAATT-TTAAT-AAATACCA
1 AAAC-AG-AATTAAGAATGAAA-AATA
15980257 AAACAGAATTAAGAATGAAAAATA
1 AAACAGAATTAAGAATGAAAAATA
15980281 AAACA
1 AAACA
15980286 AAAAATTTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
23 4 0.10
24 19 0.46
25 14 0.34
26 4 0.10
ACGTcount: A:0.65, C:0.08, G:0.09, T:0.18
Consensus pattern (24 bp):
AAACAGAATTAAGAATGAAAAATA
Found at i:15980264 original size:49 final size:49
Alignment explanation
Indices: 15980208--15980305 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
15980198 TAAAGGAGAT
*
15980208 AAACAGAATTAAGAATGAAAAATAAAACAAGAAATTTTAATAAATACCA
1 AAACAGAATTAAGAATGAAAAATAAAACAAAAAATTTTAATAAATACCA
15980257 AAACAGAATTAAGAATGAAAAATAAAACAAAAAATTTTAATAAATACCA
1 AAACAGAATTAAGAATGAAAAATAAAACAAAAAATTTTAATAAATACCA
15980306 TTATAATAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.64, C:0.08, G:0.07, T:0.20
Consensus pattern (49 bp):
AAACAGAATTAAGAATGAAAAATAAAACAAAAAATTTTAATAAATACCA
Found at i:15980342 original size:17 final size:17
Alignment explanation
Indices: 15980322--15980365 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
15980312 TAATGATAAT
15980322 AAAATAAAATAAAAATA
1 AAAATAAAATAAAAATA
* * *
15980339 AAAAGAAATTAATAATA
1 AAAATAAAATAAAAATA
*
15980356 AAAATTAAAT
1 AAAATAAAAT
15980366 TACTTTGCTT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (17 bp):
AAAATAAAATAAAAATA
Found at i:15981268 original size:20 final size:21
Alignment explanation
Indices: 15981236--15981281 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
15981226 TTAAATTTTC
**
15981236 AAAAAATCTCAAAACGTTCAT
1 AAAAAATCTCAAAAAATTCAT
15981257 AAAAAATC-CAAAAAATTCAT
1 AAAAAATCTCAAAAAATTCAT
15981277 AAAAA
1 AAAAA
15981282 TGAAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.63, C:0.15, G:0.02, T:0.20
Consensus pattern (21 bp):
AAAAAATCTCAAAAAATTCAT
Found at i:15981282 original size:19 final size:20
Alignment explanation
Indices: 15981233--15981282 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
15981223 GCTTTAAATT
**
15981233 TTCA-AAAAATCTCAAAACG
1 TTCATAAAAATCTCAAAAAA
15981252 TTCATAAAAAATC-CAAAAAA
1 TTCAT-AAAAATCTCAAAAAA
15981272 TTCATAAAAAT
1 TTCATAAAAAT
15981283 GAAAATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 10 0.37
20 10 0.37
21 7 0.26
ACGTcount: A:0.58, C:0.16, G:0.02, T:0.24
Consensus pattern (20 bp):
TTCATAAAAATCTCAAAAAA
Found at i:15981296 original size:18 final size:17
Alignment explanation
Indices: 15981275--15981308 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15981265 CAAAAAATTC
15981275 ATAAAAATGAAAATTTTA
1 ATAAAAAT-AAAATTTTA
*
15981293 ATAAAAGTAAAATTTT
1 ATAAAAATAAAATTTT
15981309 CTTAAAATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (17 bp):
ATAAAAATAAAATTTTA
Found at i:15981471 original size:26 final size:26
Alignment explanation
Indices: 15981442--15981548 Score: 67
Period size: 25 Copynumber: 4.0 Consensus size: 26
15981432 ATCTTACAAG
*
15981442 TTTAATTTTTATATATTTTACATATT
1 TTTAATTTTTATATATTTTAAATATT
* * ***
15981468 TTT-ATTTTTTTTTATTTTGTTTAATT
1 TTTAATTTTTATATATTTTAAAT-ATT
*
15981494 TTTAAGTTTTT-TATTTTTCTAAAT-TT
1 TTTAA-TTTTTATATATTT-TAAATATT
*
15981520 TTTAATTTTTAAAATTATTTTAAAGTATT
1 TTTAATTTTT-ATA-TATTTTAAA-TATT
15981549 CCAGAATTTT
Statistics
Matches: 60, Mismatches: 12, Indels: 15
0.69 0.14 0.17
Matches are distributed among these distances:
25 19 0.32
26 16 0.27
27 11 0.18
28 12 0.20
29 2 0.03
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (26 bp):
TTTAATTTTTATATATTTTAAATATT
Found at i:15981518 original size:25 final size:25
Alignment explanation
Indices: 15981475--15981529 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
15981465 ATTTTTATTT
*
15981475 TTTTTTATTTTGTTTAA-TTTTTAA
1 TTTTTTATTTTGTTAAATTTTTTAA
15981499 GTTTTTTATTTT-TCTAAATTTTTTAA
1 -TTTTTTATTTTGT-TAAATTTTTTAA
15981525 TTTTT
1 TTTTT
15981530 AAAATTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 1 0.04
25 19 0.70
26 7 0.26
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.75
Consensus pattern (25 bp):
TTTTTTATTTTGTTAAATTTTTTAA
Found at i:15981522 original size:17 final size:16
Alignment explanation
Indices: 15981445--15981532 Score: 59
Period size: 17 Copynumber: 5.1 Consensus size: 16
15981435 TTACAAGTTT
*
15981445 AATTTTTATATATTTTA
1 AATTTTT-TATTTTTTA
* *
15981462 CATATTTTTATTTTTTTTT
1 -A-ATTTTT-TATTTTTTA
* *
15981481 ATTTTGTTTAATTTTTA
1 AATTT-TTTATTTTTTA
*
15981498 AGTTTTTTATTTTTCTA
1 AATTTTTTATTTTT-TA
*
15981515 AATTTTTTAATTTTTA
1 AATTTTTTATTTTTTA
15981531 AA
1 AA
15981533 ATTATTTTAA
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
16 12 0.21
17 27 0.48
18 4 0.07
19 13 0.23
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (16 bp):
AATTTTTTATTTTTTA
Found at i:15981534 original size:17 final size:16
Alignment explanation
Indices: 15981487--15981542 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 16
15981477 TTTTATTTTG
*
15981487 TTTAATTTTTAAGTTT
1 TTTAATTTTTAAATTT
*
15981503 TTTATTTTTCTAAATTT
1 TTTAATTTT-TAAATTT
15981520 TTTAATTTTTAAAATTAT
1 TTTAATTTTT-AAATT-T
15981538 TTTAA
1 TTTAA
15981543 AGTATTCCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 9 0.26
17 19 0.56
18 6 0.18
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (16 bp):
TTTAATTTTTAAATTT
Found at i:15981750 original size:20 final size:18
Alignment explanation
Indices: 15981696--15981751 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
15981686 AGACAAATAT
*
15981696 ATTTTTATTAAAATGTTAA
1 ATTTTT-TTAAAATTTTAA
* *
15981715 ATTTTTTTTAATTTTTCAGA
1 ATTTTTTTAAAATTTT-A-A
15981735 ATTTTTTTAAAATTTTA
1 ATTTTTTTAAAATTTTA
15981752 TTAAGACTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 7 0.23
19 8 0.27
20 15 0.50
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.61
Consensus pattern (18 bp):
ATTTTTTTAAAATTTTAA
Found at i:15981858 original size:21 final size:21
Alignment explanation
Indices: 15981818--15981872 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
15981808 AGAATTTCTA
*
15981818 AAAATATTTTTAAAAATTTTTT
1 AAAATA-TTTTATAAATTTTTT
* *
15981840 ATAATATTTTATAATTTTTTT
1 AAAATATTTTATAAATTTTTT
*
15981861 AAAAAATTTTAT
1 AAAATATTTTAT
15981873 TAGATTTCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 23 0.82
22 5 0.18
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
AAAATATTTTATAAATTTTTT
Found at i:15981888 original size:33 final size:32
Alignment explanation
Indices: 15981845--15981919 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 32
15981835 TTTTTATAAT
* *
15981845 ATTTTATAATTTTTTTA-AAAAATTTTATTAGA
1 ATTTTTTAATTTTTTTATAAAAAATTTATT-GA
*
15981877 TTTCTTTTAATTTTTTTATAAAAAATTTATTGA
1 ATT-TTTTAATTTTTTTATAAAAAATTTATTGA
15981910 ATTTTTTAAT
1 ATTTTTTAAT
15981920 GTTAACATGG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
32 9 0.24
33 17 0.46
34 11 0.30
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (32 bp):
ATTTTTTAATTTTTTTATAAAAAATTTATTGA
Found at i:15982771 original size:15 final size:15
Alignment explanation
Indices: 15982751--15982780 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15982741 ATTACTGTCA
15982751 TTATTGCTGATGCCG
1 TTATTGCTGATGCCG
*
15982766 TTATTGCTGCTGCCG
1 TTATTGCTGATGCCG
15982781 CTGCTGTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.23, G:0.27, T:0.40
Consensus pattern (15 bp):
TTATTGCTGATGCCG
Found at i:15986311 original size:3 final size:3
Alignment explanation
Indices: 15986303--15986329 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
15986293 ACTATTAAAT
15986303 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
15986330 ATATATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:15986350 original size:27 final size:26
Alignment explanation
Indices: 15986319--15986373 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
15986309 TAATAATAAT
* *
15986319 AATAATAATAAATATATTTTTTAAAAA
1 AATAATAATAAAT-TATTATTAAAAAA
* *
15986346 AATAATTATTAATTATTATTAAAAAA
1 AATAATAATAAATTATTATTAAAAAA
15986372 AA
1 AA
15986374 GAGAAAATAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (26 bp):
AATAATAATAAATTATTATTAAAAAA
Found at i:15987850 original size:15 final size:15
Alignment explanation
Indices: 15987830--15987968 Score: 140
Period size: 15 Copynumber: 9.3 Consensus size: 15
15987820 TTTCTAAAAC
15987830 CCCCTAAAATCCAAA
1 CCCCTAAAATCCAAA
*
15987845 CCCCTAAAATTCAAAA
1 CCCCTAAAA-TCCAAA
*
15987861 CCCCTAAAATTCAAA
1 CCCCTAAAATCCAAA
*
15987876 CCCC-AAAATCTAAA
1 CCCCTAAAATCCAAA
*
15987890 TCCCTAAAATCCGAAA
1 CCCCTAAAATCC-AAA
15987906 CCCCTAAAATCCAAA
1 CCCCTAAAATCCAAA
* *
15987921 CCTC-AAAATCAAAAA
1 CCCCTAAAATC-CAAA
*
15987936 TCCCTAAAATCCAAA
1 CCCCTAAAATCCAAA
* * *
15987951 -ACCTTAAATCAAAA
1 CCCCTAAAATCCAAA
15987965 CCCC
1 CCCC
15987969 AAACCACAAA
Statistics
Matches: 101, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
14 28 0.28
15 39 0.39
16 34 0.34
ACGTcount: A:0.48, C:0.35, G:0.01, T:0.17
Consensus pattern (15 bp):
CCCCTAAAATCCAAA
Found at i:15987979 original size:51 final size:51
Alignment explanation
Indices: 15987916--15988024 Score: 132
Period size: 51 Copynumber: 2.1 Consensus size: 51
15987906 CCCCTAAAAT
* *
15987916 CCAAACCTCAAAATCAAAAATCCCTAAAATC-CAAAAC-CTTAAATCAAAACC
1 CCAAACCACAAAA-CAAAAAT-CCTAAAATCTCAAAACTCTAAAATCAAAACC
** *
15987967 CCAAACCACAAAACCCAAATCCTAAAATCTCCAAACTCTAAAATCAAAACC
1 CCAAACCACAAAACAAAAATCCTAAAATCTCAAAACTCTAAAATCAAAACC
*
15988018 CTAAACC
1 CCAAACC
15988025 TTCCATATCC
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
49 9 0.18
50 10 0.20
51 31 0.62
ACGTcount: A:0.51, C:0.34, G:0.00, T:0.15
Consensus pattern (51 bp):
CCAAACCACAAAACAAAAATCCTAAAATCTCAAAACTCTAAAATCAAAACC
Found at i:15994023 original size:8 final size:8
Alignment explanation
Indices: 15994010--15994041 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
15994000 GTAACTTTAA
15994010 AAAAAAAT
1 AAAAAAAT
15994018 AAAAAAAAT
1 -AAAAAAAT
15994027 AAAAAAAT
1 AAAAAAAT
15994035 AAAAAAA
1 AAAAAAA
15994042 AGTTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (8 bp):
AAAAAAAT
Found at i:15994023 original size:9 final size:9
Alignment explanation
Indices: 15994009--15994042 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
15993999 AGTAACTTTA
15994009 AAAAAAAAT
1 AAAAAAAAT
15994018 AAAAAAAAT
1 AAAAAAAAT
15994027 -AAAAAAAT
1 AAAAAAAAT
15994035 AAAAAAAA
1 AAAAAAAA
15994043 GTTTTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:15994032 original size:17 final size:17
Alignment explanation
Indices: 15994010--15994042 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
15994000 GTAACTTTAA
15994010 AAAAAAATAAAAAAAAT
1 AAAAAAATAAAAAAAAT
15994027 AAAAAAATAAAAAAAA
1 AAAAAAATAAAAAAAA
15994043 GTTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (17 bp):
AAAAAAATAAAAAAAAT
Found at i:15996700 original size:122 final size:122
Alignment explanation
Indices: 15996483--15996805 Score: 479
Period size: 122 Copynumber: 2.7 Consensus size: 122
15996473 AAGCCATGTT
* * *
15996483 TTAAAAGATTTTTAAATTTTTAAAGTTTTATTGCCTCTGATTATGAGGAGCATTCAAAGATTTTG
1 TTAAAAGATTTTTAAATTTTTAAAGTTTCATTGCTTCTGATTATGAGGAGCATTCAAAGATTTTA
* ** * *
15996548 AGATTTGTAAGACCTTCGGGCATAATCTCTACAAGCCTCTGCACACGACTTTTAAGA
66 AGATTTGTAAGACCTCCGAACATAATCTCTAAAAGCCTCTGCACACGACTTTCAAGA
* *
15996605 TTAAAAGATTTTCAAATTTTTAAAGTTTCATTGCTTCTGATTATGAGGAGCATTCAAAGGTTTTA
1 TTAAAAGATTTTTAAATTTTTAAAGTTTCATTGCTTCTGATTATGAGGAGCATTCAAAGATTTTA
** *
15996670 AGATTTGTAAGACCTCCGAACATAATCTCTAAAAGCCTCTGTGCATGACTTTCAAGA
66 AGATTTGTAAGACCTCCGAACATAATCTCTAAAAGCCTCTGCACACGACTTTCAAGA
* *
15996727 TTAAAAGATTTTTAAA-TTTTAAAGTTTCATTGCCTT-TGATTATGAGGAGTATTCAAACATTTT
1 TTAAAAGATTTTTAAATTTTTAAAGTTTCATTG-CTTCTGATTATGAGGAGCATTCAAAGATTTT
*
15996790 TAGATTTGTAAGACCT
65 AAGATTTGTAAGACCT
15996806 TCAGGTATGA
Statistics
Matches: 182, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
121 55 0.30
122 127 0.70
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (122 bp):
TTAAAAGATTTTTAAATTTTTAAAGTTTCATTGCTTCTGATTATGAGGAGCATTCAAAGATTTTA
AGATTTGTAAGACCTCCGAACATAATCTCTAAAAGCCTCTGCACACGACTTTCAAGA
Found at i:15997020 original size:109 final size:111
Alignment explanation
Indices: 15996900--15997126 Score: 260
Period size: 110 Copynumber: 2.1 Consensus size: 111
15996890 TATCCCAGTC
* * * * * * * *
15996900 GATTTTGTAAGACCTCCGGGTATAATTTTGATTTACGGTGTTGTGACGATCGATTCTTTAT-TTT
1 GATTTTGTAAGACCTCCGAGCATAAATTCGATTCACGATGTTATCACGATCGATTCTTTATCTTT
** * *
15996964 TGACTTACGATATTATCCTGGTCAATTCTGTAAGATCTCCAAGCAT
66 TGACTTACGATATTATCCCAGTCAATTCTATAAGACCTCCAAGCAT
* *
15997010 GATTTT-TAAGACCTCCGAGCATAAATTCGATTCGCGATGTTATCCCGATCGATTCTTTATCTTT
1 GATTTTGTAAGACCTCCGAGCATAAATTCGATTCACGATGTTATCACGATCGATTCTTTATCTTT
* * * * *
15997074 TGACTTATGGTGTTATCCCAGTCGATTCTATAAGACCTCCGAGCAT
66 TGACTTACGATATTATCCCAGTCAATTCTATAAGACCTCCAAGCAT
*
15997120 AATTTTG
1 GATTTTG
15997127 ATTGCGGTGT
Statistics
Matches: 95, Mismatches: 20, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
109 44 0.46
110 51 0.54
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (111 bp):
GATTTTGTAAGACCTCCGAGCATAAATTCGATTCACGATGTTATCACGATCGATTCTTTATCTTT
TGACTTACGATATTATCCCAGTCAATTCTATAAGACCTCCAAGCAT
Found at i:15997172 original size:87 final size:88
Alignment explanation
Indices: 15997016--15997198 Score: 262
Period size: 87 Copynumber: 2.1 Consensus size: 88
15997006 GCATGATTTT
* **
15997016 TAAGACCTCCGAGCATAAATTCGATTCGCGATGTTATCCCGATCGATTCTTTATCTTTTGACTTA
1 TAAGACCTCCGAGCATAAATTCGATTCGCGATGTTATCCCGATCGATTCCTTATCTTTCAACTTA
*
15997081 TGGTGTTATCCCAGTCGATTCTA
66 TGGTGTTATCCCAATCGATTCTA
* * *
15997104 TAAGACCTCCGAGCATAATTTTGATT-GCGGTGTTATCCCGAGT-GATTCCTTATCTTTCAACTT
1 TAAGACCTCCGAGCATAAATTCGATTCGCGATGTTATCCCGA-TCGATTCCTTATCTTTCAACTT
* *
15997167 GTGGTGTTATCCCAATCGATTCTG
65 ATGGTGTTATCCCAATCGATTCTA
15997191 TAAGACCT
1 TAAGACCT
15997199 TCGAACATGA
Statistics
Matches: 85, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
87 60 0.71
88 25 0.29
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (88 bp):
TAAGACCTCCGAGCATAAATTCGATTCGCGATGTTATCCCGATCGATTCCTTATCTTTCAACTTA
TGGTGTTATCCCAATCGATTCTA
Found at i:15997191 original size:197 final size:196
Alignment explanation
Indices: 15996812--15997308 Score: 536
Period size: 197 Copynumber: 2.5 Consensus size: 196
15996802 ACCTTCAGGT
* * * *
15996812 ATGATTTCTAAGACCTCCAAGCATAAATTGAATTCACGGTGTTATCCCGATCAATTTTTTAT-TT
1 ATGATTTCTAAGACCTCCGAGCATAAATTG-ATTCGCGATGTTATCCCGATCAATTCTTTATCTT
* * * * *
15996876 CTGACTTACGGTGTTATCCCAGTCGATTTTGTAAGACCTCCGGGTATAATTTTGATTTACGGTGT
65 TTGACTTATGGTGTTATCCCAGTCGATTCTGTAAGACCTCCGAGCATAATTTTGATTTACGGTGT
* * * ** *** *
15996941 TGTGACGATCGATTCTTTATTTTTGACTTACGATATTATCCTGGTCAATTCTGTAAGATC-TCCA
130 TATCACGATCGATTCCTTATTTTCAACTTACGATATTATCCCAATCAATTCTGTAAGACCTTCCA
15997005 AGC
195 A-C
* *
15997008 ATGATTTTTAAGACCTCCGAGCATAAATTCGATTCGCGATGTTATCCCGATCGATTCTTTATCTT
1 ATGATTTCTAAGACCTCCGAGCATAAATT-GATTCGCGATGTTATCCCGATCAATTCTTTATCTT
* *
15997073 TTGACTTATGGTGTTATCCCAGTCGATTCTATAAGACCTCCGAGCATAATTTTGA-TTGCGGTGT
65 TTGACTTATGGTGTTATCCCAGTCGATTCTGTAAGACCTCCGAGCATAATTTTGATTTACGGTGT
* ** * * *
15997137 TATCCCGAGT-GATTCCTTATCTTTCAACTTGTGGTGTTATCCCAATCGATTCTGTAAGACCTTC
130 TATCACGA-TCGATTCCTTAT-TTTCAACTTACGATATTATCCCAATCAATTCTGTAAGACCTTC
*
15997201 GAAC
193 CAAC
* * * * * * * *
15997205 ATGATTTCTAAGTCATCAGGGCATAATTTTGATTCG-TAGTGTTATCCCAATCAATTCATTATCT
1 ATGATTTCTAAGACCTCCGAGCATAA-ATTGATTCGCGA-TGTTATCCCGATCAATTCTTTATCT
* * *
15997269 TTCGACTTGTGGTGTTATTCCAGTCGATTCTGTAAGACCT
64 TTTGACTTATGGTGTTATCCCAGTCGATTCTGTAAGACCT
15997309 TCGGACATGA
Statistics
Matches: 251, Mismatches: 43, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
196 77 0.31
197 168 0.67
198 6 0.02
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (196 bp):
ATGATTTCTAAGACCTCCGAGCATAAATTGATTCGCGATGTTATCCCGATCAATTCTTTATCTTT
TGACTTATGGTGTTATCCCAGTCGATTCTGTAAGACCTCCGAGCATAATTTTGATTTACGGTGTT
ATCACGATCGATTCCTTATTTTCAACTTACGATATTATCCCAATCAATTCTGTAAGACCTTCCAA
C
Found at i:15997326 original size:110 final size:109
Alignment explanation
Indices: 15997115--15997419 Score: 341
Period size: 110 Copynumber: 2.8 Consensus size: 109
15997105 AAGACCTCCG
* * * * *
15997115 AGCATAATTTTGATTGCG-GTGTTATCCCGAGT-GATTCCTTATCTTTCAACTTGTGGTGTTATC
1 AGCATAATTTTGATT-CGTGTGTTATCCC-AATCAATTCATTATCTTTCGACTTGTGGTGTTATT
*
15997178 CCAATCGATTCTGTAAGACCTTCGAACATGATTTCTAAGT-CATC-
64 CCAGTCGATTCTGTAAGACCTTCGAACATGATTTCTAAGTCCATCT
15997222 AGGGCATAATTTTGATTCGTAGTGTTATCCCAATCAATTCATTATCTTTCGACTTGTGGTGTTAT
1 A--GCATAATTTTGATTCGT-GTGTTATCCCAATCAATTCATTATCTTTCGACTTGTGGTGTTAT
* *
15997287 TCCAGTCGATTCTGTAAGACCTTCGGACATGATTTCTAAGTCCTTCT
63 TCCAGTCGATTCTGTAAGACCTTCGAACATGATTTCTAAGTCCATCT
* * ** * * ** *
15997334 AGCATAATTTCGATTCGTGGTGTTATCCCGATCAATTTTTTATTTTTTGACTTACGATGTTA-TC
1 AGCATAATTTTGATTCGT-GTGTTATCCCAATCAATTCATTATCTTTCGACTTGTGGTGTTATTC
* *
15997398 ACAGTCAATTTTGTAAGACCTT
65 -CAGTCGATTCTGTAAGACCTT
15997420 TAGGTATAAT
Statistics
Matches: 170, Mismatches: 20, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
107 1 0.01
108 2 0.01
109 18 0.11
110 145 0.85
111 3 0.02
112 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (109 bp):
AGCATAATTTTGATTCGTGTGTTATCCCAATCAATTCATTATCTTTCGACTTGTGGTGTTATTCC
AGTCGATTCTGTAAGACCTTCGAACATGATTTCTAAGTCCATCT
Found at i:15997501 original size:88 final size:88
Alignment explanation
Indices: 15997337--15997506 Score: 225
Period size: 88 Copynumber: 1.9 Consensus size: 88
15997327 TCCTTCTAGC
* * * * *
15997337 ATAATTTCGATTCGTGGTGTTATCCCGATCAATTTTTTATTTTTTGACTTACGATGTTATCACAG
1 ATAATTTCGATTCGCGATGTTATCCCGATCAATTTCTTATCTTTCGACTTACGATGTTATCACAG
*
15997402 TCAATTTTGTAAGACCTTTAGGT
66 TCAATTCTGTAAGACCTTTAGGT
* * *
15997425 ATAATTTTGATTCGCGATGTTATCCCGATCGATTTCTTATCTTTCGACTTAC-AGTGTTATCCCA
1 ATAATTTCGATTCGCGATGTTATCCCGATCAATTTCTTATCTTTCGACTTACGA-TGTTATCACA
**
15997489 GTTGATTCTGTAAGACCT
65 GTCAATTCTGTAAGACCT
15997507 CCAGACATGA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
87 1 0.01
88 69 0.99
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.44
Consensus pattern (88 bp):
ATAATTTCGATTCGCGATGTTATCCCGATCAATTTCTTATCTTTCGACTTACGATGTTATCACAG
TCAATTCTGTAAGACCTTTAGGT
Found at i:15997673 original size:197 final size:197
Alignment explanation
Indices: 15997223--15998009 Score: 856
Period size: 197 Copynumber: 4.0 Consensus size: 197
15997213 TAAGTCATCA
* * * ** *
15997223 GGGCATAATTTTGATTCGTAGTGTTATCCCAATCAATTCATTATCTTTCGACTTGTGGTGTTATT
1 GGGCATAATTTTGATTCGTGGTATTATCCCGATCAATTCATTATCTTTCGACTTACGGTGTTATC
* *
15997288 CCAGTCGATTCTGTAAGACCTTCGGACATGATTTCTAAGTCCTTCTA-GCATAATTTCGATTCGT
66 CCAGTCGATTCTGTAAGACCTTCGGACATGATTTCTAAGACC-TCTAGGCATAATTTCGATTCGC
* *
15997352 GGTGTTATCCCGATCAATTTTTTATTTTTTGACTTACGATGTTATCACAGTCAATTTTGTAAGAC
130 GGTGTTATCCCGATCAATTCTTTA-TTTTTGACTTACGATGTTATCACAGTCAATTCTGTAAGAC
*
15997417 CTTT
194 CTCT
* * * * * * *
15997421 AGGTATAATTTTGATTCGCGATGTTATCCCGATCGATTTC-TTATCTTTCGACTTACAGTGTTAT
1 GGGCATAATTTTGATTCGTGGTATTATCCCGATC-AATTCATTATCTTTCGACTTACGGTGTTAT
* * * * * * *
15997485 CCCAGTTGATTCTGTAAGACCTCCAGACATGATTTTTAAGTCTTCTGGGCATAATTTCGATTCGC
65 CCCAGTCGATTCTGTAAGACCTTCGGACATGATTTCTAAGACCTCTAGGCATAATTTCGATTCGC
* * * * * * *
15997550 AGTATTATCTCGATCAATTCTTT-TTCTTTAACTTGCGATGTTATCACAGTCGATTCTGTAAAAC
130 GGTGTTATCCCGATCAATTCTTTATT-TTTGACTTACGATGTTATCACAGTCAATTCTGTAAGAC
*
15997614 CTCC
194 CTCT
* * *
15997618 GGGCATAATTTTGATTCATGGTATTATCCCGATCGATTTC-TTAT-TGTTTGACTTACGGTGTTA
1 GGGCATAATTTTGATTCGTGGTATTATCCCGATC-AATTCATTATCT-TTCGACTTACGGTGTTA
* * * * * * * *
15997681 TCCCAGTCGATTCTATAAAATCTTCGGGCATGATTTCTAAGACCTCCAGACATAAATTCGATTCA
64 TCCCAGTCGATTCTGTAAGACCTTCGGACATGATTTCTAAGACCTCTAGGCATAATTTCGATTCG
* * * * *
15997746 TGGTGTTATCCCGATCGATTCTTTATTTTTGACTTACGGTGTTATCTCGGTCAATTCTGTAAGAC
129 CGGTGTTATCCCGATCAATTCTTTATTTTTGACTTACGATGTTATCACAGTCAATTCTGTAAGAC
15997811 CTCT
194 CTCT
* * * * *
15997815 GGGCATAAATTTGATTCGTGGTATTGTCCCGATCAATTCTTTAT-TTTTGACTTACGATGTTATC
1 GGGCATAATTTTGATTCGTGGTATTATCCCGATCAATTCATTATCTTTCGACTTACGGTGTTATC
* *
15997879 CCAGTCAATT-TCGTAAGACC-TCTGAGCATGATTTCTAAGACCTCTAGGCATAATTTCGATTCG
66 CCAGTCGATTCT-GTAAGACCTTCGGA-CATGATTTCTAAGACCTCTAGGCATAATTTCGATTCG
* * * * * *
15997942 CGGTGTTATCCCAATCGATTCTTTATTTTTTACTTGC-AGTGTTATC-CCGATCAATTATGTAAG
129 CGGTGTTATCCCGATCAATTCTTTATTTTTGACTTACGA-TGTTATCACAG-TCAATTCTGTAAG
15998005 ACCTC
192 ACCTC
15998010 CGGACATGAT
Statistics
Matches: 492, Mismatches: 87, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
195 6 0.01
196 129 0.26
197 230 0.47
198 123 0.25
199 4 0.01
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (197 bp):
GGGCATAATTTTGATTCGTGGTATTATCCCGATCAATTCATTATCTTTCGACTTACGGTGTTATC
CCAGTCGATTCTGTAAGACCTTCGGACATGATTTCTAAGACCTCTAGGCATAATTTCGATTCGCG
GTGTTATCCCGATCAATTCTTTATTTTTGACTTACGATGTTATCACAGTCAATTCTGTAAGACCT
CT
Found at i:15997709 original size:88 final size:87
Alignment explanation
Indices: 15997525--15997717 Score: 224
Period size: 88 Copynumber: 2.2 Consensus size: 87
15997515 GATTTTTAAG
* * * *
15997525 TCTTCTGGGCATAATTTCGATTCGCAGTATTATCTCGATCAATTCTTTTTCTTTAACTTGCGATG
1 TCTTC-GGGCATAATTTCGATTCACAGTATTATCCCGATCAATTCTTATTCTTTAACTTACGATG
*
15997590 TTATCACAGTCGATTCTGTAAAA
65 TTATCACAGTCGATTCTATAAAA
* * * ** * * * *
15997613 CCTCCGGGCATAATTTTGATTCATGGTATTATCCCGATCGATTTCTTATTGTTTGACTTACGGTG
1 TCTTCGGGCATAATTTCGATTCACAGTATTATCCCGATC-AATTCTTATTCTTTAACTTACGATG
*
15997678 TTATCCCAGTCGATTCTATAAAA
65 TTATCACAGTCGATTCTATAAAA
*
15997701 TCTTCGGGCATGATTTC
1 TCTTCGGGCATAATTTC
15997718 TAAGACCTCC
Statistics
Matches: 85, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
87 29 0.34
88 56 0.66
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (87 bp):
TCTTCGGGCATAATTTCGATTCACAGTATTATCCCGATCAATTCTTATTCTTTAACTTACGATGT
TATCACAGTCGATTCTATAAAA
Found at i:15997864 original size:87 final size:87
Alignment explanation
Indices: 15997713--15997907 Score: 261
Period size: 87 Copynumber: 2.3 Consensus size: 87
15997703 TTCGGGCATG
* * *
15997713 ATTTC-TAAGACCTC-CAGACATAAATTCGATTCATGGTGTTATCCCGATCGATTCTTTATTTTT
1 ATTTCGTAAGACCTCTGAG-CATAAATTCGATTCATGGTATTATCCCGATCAATTCTTTATTTTT
* * *
15997776 GACTTACGGTGTTATCTCGGTCA
65 GACTTACGATGTTATCCCAGTCA
* * * *
15997799 A-TTCTGTAAGACCTCTGGGCATAAATTTGATTCGTGGTATTGTCCCGATCAATTCTTTATTTTT
1 ATTTC-GTAAGACCTCTGAGCATAAATTCGATTCATGGTATTATCCCGATCAATTCTTTATTTTT
15997863 GACTTACGATGTTATCCCAGTCA
65 GACTTACGATGTTATCCCAGTCA
15997886 ATTTCGTAAGACCTCTGAGCAT
1 ATTTCGTAAGACCTCTGAGCAT
15997908 GATTTCTAAG
Statistics
Matches: 94, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
85 3 0.03
86 1 0.01
87 86 0.91
88 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.39
Consensus pattern (87 bp):
ATTTCGTAAGACCTCTGAGCATAAATTCGATTCATGGTATTATCCCGATCAATTCTTTATTTTTG
ACTTACGATGTTATCCCAGTCA
Found at i:15997929 original size:22 final size:23
Alignment explanation
Indices: 15997885--15997936 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
15997875 TATCCCAGTC
15997885 AATTTCGTAAGACCTCTGAGCAT
1 AATTTCGTAAGACCTCTGAGCAT
*
15997908 GATTTC-TAAGACCTCT-AGGCAT
1 AATTTCGTAAGACCTCTGA-GCAT
15997930 AATTTCG
1 AATTTCG
15997937 ATTCGCGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.04
22 19 0.76
23 5 0.20
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (23 bp):
AATTTCGTAAGACCTCTGAGCAT
Found at i:15998018 original size:109 final size:110
Alignment explanation
Indices: 15997799--15998029 Score: 276
Period size: 109 Copynumber: 2.1 Consensus size: 110
15997789 ATCTCGGTCA
* * * * *
15997799 ATTCTGTAAGACCTCTGGGCATAAATTTGATTCGTGGTATTGTCCCGATCAATTCTTTATTTTTG
1 ATTCTCTAAGACCTCTAGGCATAAATTTGATTCGCGGTATTATCCCAATCAATTCTTTATTTTTG
*
15997864 ACTTACGATGTTATCCCAGTCAATTTCGTAAGACCTCTGAGCATG
66 ACTTACGATGTTATCCCAGTCAATTTCGTAAGACCTCGGAGCATG
* *
15997909 ATT-TCTAAGACCTCTAGGCAT-AATTTCGATTCGCGGTGTTATCCCAATCGATTCTTTATTTTT
1 ATTCTCTAAGACCTCTAGGCATAAATTT-GATTCGCGGTATTATCCCAATCAATTCTTTATTTTT
* *
15997972 TACTTGC-AGTGTTATCCC-GATCAATTAT-GTAAGACCTCCGGA-CATG
65 GACTTACGA-TGTTATCCCAG-TCAATT-TCGTAAGACCT-CGGAGCATG
*
15998018 ATTCTGTAAGAC
1 ATTCTCTAAGAC
15998030 TTCCAGGTAT
Statistics
Matches: 104, Mismatches: 11, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
108 7 0.07
109 83 0.80
110 14 0.13
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (110 bp):
ATTCTCTAAGACCTCTAGGCATAAATTTGATTCGCGGTATTATCCCAATCAATTCTTTATTTTTG
ACTTACGATGTTATCCCAGTCAATTTCGTAAGACCTCGGAGCATG
Found at i:15998312 original size:23 final size:23
Alignment explanation
Indices: 15998286--15998345 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 23
15998276 TGTCTTTGCC
15998286 CTAAGCATGATTTTGTAAGACCT
1 CTAAGCATGATTTTGTAAGACCT
* *
15998309 CTAAGCATGA-TTTCTAAGTCCT
1 CTAAGCATGATTTTGTAAGACCT
* *
15998331 CCAAGCATAATTTTG
1 CTAAGCATGATTTTG
15998346 ATTCGCGATG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 18 0.58
23 13 0.42
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (23 bp):
CTAAGCATGATTTTGTAAGACCT
Found at i:15998436 original size:22 final size:22
Alignment explanation
Indices: 15998411--15998454 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15998401 GTCGATTCTG
* *
15998411 TAAGACCTCCAGGCATGATTTC
1 TAAGACCTCCAAGCATAATTTC
*
15998433 TAAGTCCTCCAAGCATAATTTC
1 TAAGACCTCCAAGCATAATTTC
15998455 GATTCGCGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (22 bp):
TAAGACCTCCAAGCATAATTTC
Found at i:15998562 original size:22 final size:22
Alignment explanation
Indices: 15998520--15998562 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
15998510 GTCGATTCTG
* *
15998520 TAAGACCTTCGGACATGATTTT
1 TAAGACCTCCGGACATAATTTT
*
15998542 TAAGACCTCCGGGCATAATTT
1 TAAGACCTCCGGACATAATTT
15998563 CGATTCGTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (22 bp):
TAAGACCTCCGGACATAATTTT
Found at i:15998563 original size:109 final size:108
Alignment explanation
Indices: 15998314--15998782 Score: 498
Period size: 109 Copynumber: 4.3 Consensus size: 108
15998304 GACCTCTAAG
* ** *
15998314 CATGATTTCTAAGTCCTCCAAGCATAATTTTGATTCGCGATGTTATCTCGATCGATTCCTTATCT
1 CATGATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCTCGATCGATTCCTTATCT
*
15998379 TTGGACTTGCGGTGTTATCCTAGTCGATTCTGTAAGACCTCCAGG-
66 TT-GACTTACGGTGTTATCC-AGTCGATTCTGTAAGACCTCC-GGA
* ** **
15998424 CATGATTTCTAAGTCCTCCAAGCATAATTTCGATTCGCGATGTTATCTCGATCGATTTTTTATCT
1 CATGATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCTCGATCGATTCCTTATCT
* * ** * *
15998489 CTAACTTGTGATGTTATCACAGTCGATTCTGTAAGACCTTCGGA
66 TTGACTTACGGTGTTATC-CAGTCGATTCTGTAAGACCTCCGGA
* * * *
15998533 CATGATTTTTAAGACCTCCGGGCATAATTTCGATTCGTGATATTAT-TCCGATCGATTTCTTATT
1 CATGATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCT-CGATCGATTCCTTA-T
* * * * *
15998597 TTTTGACTTACGGTATTATCTCAGTCGATTATGTAAGATCTCC-AA
64 CTTTGACTTACGGTGTTATC-CAGTCGATTCTGTAAGACCTCCGGA
*
15998642 GCATGATTTCTAAGACCTCCGGGCATATATTT-GATTCGC-AGTGTTATCTCGATCGATTCTTTA
1 -CATGATTTCTAAGACCTCCGGGCATA-ATTTCGATTCGCGA-TGTTATCTCGATCGATTCCTTA
* * * ** *
15998705 TTTTTGACTTACGGTGTTATCCCGGTCAATTCCATAAGACCTCCGGG
63 TCTTTGACTTACGGTGTTAT-CCAGTCGATTCTGTAAGACCTCCGGA
* *
15998752 CATGATTTCTATGACCTCCGGGCATGATTTC
1 CATGATTTCTAAGACCTCCGGGCATAATTTC
15998783 TATGACCTCC
Statistics
Matches: 305, Mismatches: 43, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
108 7 0.02
109 147 0.48
110 146 0.48
111 5 0.02
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (108 bp):
CATGATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCTCGATCGATTCCTTATCT
TTGACTTACGGTGTTATCCAGTCGATTCTGTAAGACCTCCGGA
Found at i:15998656 original size:110 final size:109
Alignment explanation
Indices: 15998294--15998782 Score: 524
Period size: 110 Copynumber: 4.5 Consensus size: 109
15998284 CCCTAAGCAT
* * * * ** *
15998294 GATTTTGTAAGACCTCTAAGCATGATTTCTAAGTCCTCCAAGCATAATTTTGATTCGCGATGTTA
1 GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATGTTA
* * * *
15998359 TCTCGATCGATTCCTTATCTTTGGACTTGCGGTGTTATCCTAGTC
66 TCTCGATCGATTTCTTATTTTTTGACTTACGGTGTTATCC-AGTC
* **
15998404 GATTCTGTAAGACCTCCAGGCATGATTTCTAAGTCCTCCAAGCATAATTTCGATTCGCGATGTTA
1 GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATGTTA
* * * * ** *
15998469 TCTCGATCGATTTTTTA-TCTCTAACTTGTGATGTTATCACAGTC
66 TCTCGATCGATTTCTTATTTTTTGACTTACGGTGTTATC-CAGTC
* * * *
15998513 GATTCTGTAAGACCTTC-GGACATGATTTTTAAGACCTCCGGGCATAATTTCGATTCGTGATATT
1 GATTCTGTAAGACCTCCAGG-CATGATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATGTT
*
15998577 AT-TCCGATCGATTTCTTATTTTTTGACTTACGGTATTATCTCAGTC
65 ATCT-CGATCGATTTCTTATTTTTTGACTTACGGTGTTATC-CAGTC
* * *
15998623 GATTATGTAAGATCTCCAAGCATGATTTCTAAGACCTCCGGGCATATATTT-GATTCGC-AGTGT
1 GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCGGGCATA-ATTTCGATTCGCGA-TGT
*
15998686 TATCTCGATCGA-TTCTT-TATTTTTGACTTACGGTGTTATCCCGGTC
64 TATCTCGATCGATTTCTTAT-TTTTTGACTTACGGTGTTAT-CCAGTC
* ** * * *
15998732 AATTCCATAAGACCTCCGGGCATGATTTCTATGACCTCCGGGCATGATTTC
1 GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCGGGCATAATTTC
15998783 TATGACCTCC
Statistics
Matches: 321, Mismatches: 47, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
108 8 0.02
109 153 0.48
110 154 0.48
111 6 0.02
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (109 bp):
GATTCTGTAAGACCTCCAGGCATGATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATGTTA
TCTCGATCGATTTCTTATTTTTTGACTTACGGTGTTATCCAGTC
Found at i:15998680 original size:219 final size:219
Alignment explanation
Indices: 15998314--15998782 Score: 568
Period size: 219 Copynumber: 2.1 Consensus size: 219
15998304 GACCTCTAAG
* ** * *
15998314 CATGATTTCTAAGTCCTCCAAGCATAATTTTGATTCGCGATGTTATCTCGATCGATTCCTTATCT
1 CATGATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATATTATCTCGATCGATTCCTTATCT
* * * * *
15998379 TTGGACTTGCGGTGTTATCCTAGTCGATTCTGTAAGACCTCCAGGCATGATTTCTAAGTCCTCCA
66 TTGGACTTACGGTATTATCCTAGTCGATTATGTAAGACCTCCAAGCATGATTTCTAAGACCTCCA
* **
15998444 AGCATAATTTCGATTCGC-GATGTTATCTCGATCGATTTTTTATCTCTAACTTGTGATGTTATCA
131 AGCATAATTTCGATTCGCAG-TGTTATCTCGATCGATTCTTTATCTCTAACTTACGATGTTATCA
* ** *
15998508 CAGTCGATTCTGTAAGACCTTCGGA
195 CAGTCAATTCCATAAGACCTCCGGA
* * * *
15998533 CATGATTTTTAAGACCTCCGGGCATAATTTCGATTCGTGATATTAT-TCCGATCGATTTCTTATT
1 CATGATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATATTATCT-CGATCGATTCCTTATC
* *
15998597 TTTTGACTTACGGTATTAT-CTCAGTCGATTATGTAAGATCTCCAAGCATGATTTCTAAGACCTC
65 TTTGGACTTACGGTATTATCCT-AGTCGATTATGTAAGACCTCCAAGCATGATTTCTAAGACCTC
** * * * *
15998661 CGGGCATATATTT-GATTCGCAGTGTTATCTCGATCGATTCTTTATTTTTGACTTACGGTGTTAT
129 CAAGCATA-ATTTCGATTCGCAGTGTTATCTCGATCGATTCTTTATCTCTAACTTACGATGTTAT
* * *
15998725 CCCGGTCAATTCCATAAGACCTCCGGG
193 CACAGTCAATTCCATAAGACCTCCGGA
* *
15998752 CATGATTTCTATGACCTCCGGGCATGATTTC
1 CATGATTTCTAAGACCTCCGGGCATAATTTC
15998783 TATGACCTCC
Statistics
Matches: 211, Mismatches: 35, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
218 3 0.01
219 203 0.96
220 5 0.02
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (219 bp):
CATGATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATATTATCTCGATCGATTCCTTATCT
TTGGACTTACGGTATTATCCTAGTCGATTATGTAAGACCTCCAAGCATGATTTCTAAGACCTCCA
AGCATAATTTCGATTCGCAGTGTTATCTCGATCGATTCTTTATCTCTAACTTACGATGTTATCAC
AGTCAATTCCATAAGACCTCCGGA
Found at i:15998767 original size:22 final size:22
Alignment explanation
Indices: 15998742--15998804 Score: 117
Period size: 22 Copynumber: 2.9 Consensus size: 22
15998732 AATTCCATAA
15998742 GACCTCCGGGCATGATTTCTAT
1 GACCTCCGGGCATGATTTCTAT
15998764 GACCTCCGGGCATGATTTCTAT
1 GACCTCCGGGCATGATTTCTAT
*
15998786 GACCTCCGGGCATAATTTC
1 GACCTCCGGGCATGATTTC
15998805 AATTTGTGGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.30
Consensus pattern (22 bp):
GACCTCCGGGCATGATTTCTAT
Found at i:15998899 original size:22 final size:24
Alignment explanation
Indices: 15998864--15998912 Score: 75
Period size: 22 Copynumber: 2.1 Consensus size: 24
15998854 ACCTGATCAA
*
15998864 TTCTATAAGACCTCCGGGCATGAT
1 TTCTATAAGACCTCCGGGCATAAT
15998888 TTCTA-AA-ACCTCCGGGCATAAT
1 TTCTATAAGACCTCCGGGCATAAT
15998910 TTC
1 TTC
15998913 GATTTGCAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 17 0.71
23 2 0.08
24 5 0.21
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (24 bp):
TTCTATAAGACCTCCGGGCATAAT
Found at i:15998899 original size:130 final size:131
Alignment explanation
Indices: 15998642--15998912 Score: 368
Period size: 130 Copynumber: 2.1 Consensus size: 131
15998632 AGATCTCCAA
* *
15998642 GCATGATTTCTAAGACCTCCGGGCATATATTTGATTCGCAGTGTTATCTCGATCGATTCTTTATT
1 GCATGATTTCTAAGACCTCCGGGCATATATTTAATTCGCAGTGTTATCTCAATCGATTCTTTATT
* * * **
15998707 TTTGACTTACGGTGTTATCCCGGTCAATTCCATAAGACCTCCGGGCATGATTTCTATGACCTCCG
66 TTTGACTTACAGTGTTAACCCGATCAATTCCATAAGACCTCCGGGCATGATTTCTAAAACCTCCG
15998772 G
131 G
* * **
15998773 GCATGATTTCTATGACCTCCGGGCATA-ATTTCAATTTGTGGTGTTATC-CTAATCGATTCTTTA
1 GCATGATTTCTAAGACCTCCGGGCATATATTT-AATTCGCAGTGTTATCTC-AATCGATTCTTTA
* * *
15998836 -TTTTGACTTGCAGTGTTAACCTGATCAATTCTATAAGACCTCCGGGCATGATTTCTAAAACCTC
64 TTTTTGACTTACAGTGTTAACCCGATCAATTCCATAAGACCTCCGGGCATGATTTCTAAAACCTC
15998900 CGG
129 CGG
*
15998903 GCATAATTTC
1 GCATGATTTC
15998913 GATTTGCAGT
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
130 73 0.59
131 50 0.41
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.37
Consensus pattern (131 bp):
GCATGATTTCTAAGACCTCCGGGCATATATTTAATTCGCAGTGTTATCTCAATCGATTCTTTATT
TTTGACTTACAGTGTTAACCCGATCAATTCCATAAGACCTCCGGGCATGATTTCTAAAACCTCCG
G
Found at i:15998972 original size:108 final size:107
Alignment explanation
Indices: 15998764--15998991 Score: 341
Period size: 108 Copynumber: 2.1 Consensus size: 107
15998754 TGATTTCTAT
** ** *
15998764 GACCTCCGGGCATGATTTCTATGACCTCCGGGCATAATTTCAATTTGTGGTGTTATCCTAATCGA
1 GACCTCCGGGCATGATTTCTAAAACCTCCGGGCATAATTTCAATTTGCAGTGTTATCCCAATCGA
* *
15998829 TTCTTTATTTTGACTTGCAGTGTTAACCTGATCAATTCTATAA
66 TTCTTTATTTTGACTTGCAGTGTTAACCAGATCAATTCT-CAA
* *
15998872 GACCTCCGGGCATGATTTCTAAAACCTCCGGGCATAATTTCGATTTGCAGTGTTATCCCGATCGA
1 GACCTCCGGGCATGATTTCTAAAACCTCCGGGCATAATTTCAATTTGCAGTGTTATCCCAATCGA
*
15998937 TTCTTTATTTTTGACTTGCAGTGTTATCCAG-TCAATTCTCAA
66 TTCTTTA-TTTTGACTTGCAGTGTTAACCAGATCAATTCTCAA
15998979 GACCTCCGGGCAT
1 GACCTCCGGGCAT
15998992 AAATTCGATT
Statistics
Matches: 109, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
107 15 0.14
108 73 0.67
109 21 0.19
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (107 bp):
GACCTCCGGGCATGATTTCTAAAACCTCCGGGCATAATTTCAATTTGCAGTGTTATCCCAATCGA
TTCTTTATTTTGACTTGCAGTGTTAACCAGATCAATTCTCAA
Found at i:16000788 original size:14 final size:14
Alignment explanation
Indices: 16000769--16000896 Score: 94
Period size: 15 Copynumber: 8.6 Consensus size: 14
16000759 TCTAAAATCT
*
16000769 CCTAAATCCTAACC
1 CCTAAATCCAAACC
*
16000783 CCTAAAATTCAAAACC
1 CCT-AAA-TCCAAACC
16000799 CCTAAAATCCAAACC
1 CCT-AAATCCAAACC
* *
16000814 CCAAAATCCAAATC
1 CCTAAATCCAAACC
*
16000828 CCTAAAATCCGAAATC
1 CCT-AAATCC-AAACC
16000844 CCTAAAATCCAAACC
1 CCT-AAATCCAAACC
* * *
16000859 TCAAAATCCAAAATC
1 CCTAAATCC-AAACC
*
16000874 CCTAAAATCCAAAAC
1 CCT-AAATCCAAACC
*
16000889 CTTAAATC
1 CCTAAATC
16000897 AAGACCCCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
14 26 0.28
15 34 0.36
16 34 0.36
ACGTcount: A:0.47, C:0.34, G:0.01, T:0.18
Consensus pattern (14 bp):
CCTAAATCCAAACC
Found at i:16000800 original size:16 final size:16
Alignment explanation
Indices: 16000779--16000889 Score: 88
Period size: 16 Copynumber: 7.2 Consensus size: 16
16000769 CCTAAATCCT
16000779 AACCCCTAAAATTCAA
1 AACCCCTAAAATTCAA
*
16000795 AACCCCTAAAA-TCCA
1 AACCCCTAAAATTCAA
*
16000810 AACCCC-AAAA-TCCA
1 AACCCCTAAAATTCAA
* * *
16000824 AATCCCTAAAATCCGA
1 AACCCCTAAAATTCAA
* *
16000840 AATCCCTAAAA-TCCA
1 AACCCCTAAAATTCAA
* *
16000855 AACCTC-AAAATCCAA
1 AACCCCTAAAATTCAA
* *
16000870 AATCCCTAAAATCCAA
1 AACCCCTAAAATTCAA
16000886 AACC
1 AACC
16000890 TTAAATCAAG
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
14 17 0.22
15 25 0.32
16 36 0.46
ACGTcount: A:0.49, C:0.35, G:0.01, T:0.15
Consensus pattern (16 bp):
AACCCCTAAAATTCAA
Found at i:16000824 original size:7 final size:7
Alignment explanation
Indices: 16000802--16000887 Score: 59
Period size: 7 Copynumber: 11.6 Consensus size: 7
16000792 CAAAACCCCT
16000802 AAAATCC
1 AAAATCC
**
16000809 AAACCCC
1 AAAATCC
16000816 AAAATCC
1 AAAATCC
16000823 -AAATCCC
1 AAAAT-CC
16000830 TAAAATCC
1 -AAAATCC
*
16000838 GAAATCCC
1 AAAAT-CC
16000846 TAAAATCC
1 -AAAATCC
*
16000854 -AAACCTC
1 AAAATC-C
16000861 AAAATCC
1 AAAATCC
16000868 AAAATCCC
1 AAAAT-CC
16000876 TAAAATCC
1 -AAAATCC
16000884 AAAA
1 AAAA
16000888 CCTTAAATCA
Statistics
Matches: 62, Mismatches: 8, Indels: 18
0.70 0.09 0.20
Matches are distributed among these distances:
6 8 0.13
7 27 0.44
8 14 0.23
9 13 0.21
ACGTcount: A:0.51, C:0.33, G:0.01, T:0.15
Consensus pattern (7 bp):
AAAATCC
Found at i:16000847 original size:45 final size:43
Alignment explanation
Indices: 16000772--16000907 Score: 157
Period size: 45 Copynumber: 3.0 Consensus size: 43
16000762 AAAATCTCCT
* * *
16000772 AAATCCTAACCCCTAAAATTCAAAACCCCTAAAATCCAAACCCCA
1 AAATCCAAATCCCTAAAA-TCCAAA-CCCTAAAATCCAAACCCCA
*
16000817 AAATCCAAATCCCTAAAATCCGAAATCCCTAAAATCCAAACCTCA
1 AAATCCAAATCCCTAAAATCC-AAA-CCCTAAAATCCAAACCCCA
* *
16000862 AAATCCAAAATCCCTAAAATCCAAAACCTTAAAT-CAAGACCCCA
1 AAATCC-AAATCCCTAAAATCCAAACCCTAAAATCCAA-ACCCCA
16000906 AA
1 AA
16000908 CCACAAAACC
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
43 3 0.04
44 16 0.20
45 46 0.57
46 15 0.19
ACGTcount: A:0.49, C:0.34, G:0.01, T:0.16
Consensus pattern (43 bp):
AAATCCAAATCCCTAAAATCCAAACCCTAAAATCCAAACCCCA
Found at i:16000896 original size:30 final size:29
Alignment explanation
Indices: 16000772--16000896 Score: 128
Period size: 30 Copynumber: 4.2 Consensus size: 29
16000762 AAAATCTCCT
* * *
16000772 AAATCCTAACCCCTAAAATTCAAAACCCCTA
1 AAATCCAAATCCCTAAAATCCAAAA--CCTA
* *
16000803 AAATCCAAA-CCCCAAAATCCAAATCCCTA
1 AAATCCAAATCCCTAAAATCCAAA-ACCTA
16000832 AAATCCGAAATCCCTAAAATCC-AAACCTCA
1 AAATCC-AAATCCCTAAAATCCAAAACCT-A
*
16000862 AAATCCAAAATCCCTAAAATCCAAAACCTT
1 AAATCC-AAATCCCTAAAATCCAAAACCTA
16000892 AAATC
1 AAATC
16000897 AAGACCCCAA
Statistics
Matches: 81, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
29 13 0.16
30 44 0.54
31 24 0.30
ACGTcount: A:0.48, C:0.34, G:0.01, T:0.18
Consensus pattern (29 bp):
AAATCCAAATCCCTAAAATCCAAAACCTA
Found at i:16002183 original size:1 final size:1
Alignment explanation
Indices: 16002177--16002205 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
16002167 GCACAGGAAC
16002177 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16002206 CCAAATTAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:16005761 original size:21 final size:20
Alignment explanation
Indices: 16005733--16005772 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
16005723 AAATTATTAA
**
16005733 TAAAAAATTTAAAAAAAAAG
1 TAAAAAATGCAAAAAAAAAG
16005753 TAAATAAATGCAAAAAAAAA
1 TAAA-AAATGCAAAAAAAAA
16005773 AAAAGGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (20 bp):
TAAAAAATGCAAAAAAAAAG
Done.