Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 90 of 147
Found at i:16559731 original size:31 final size:31
Alignment explanation
Indices: 16559696--16559914 Score: 125
Period size: 31 Copynumber: 6.9 Consensus size: 31
16559686 CCACTTTAAT
* *
16559696 TGGCACCAATGAGATTTAAACCTAGTTTAGC
1 TGGCACCAATGAGATTTAAGCCTAATTTAGC
* * * *
16559727 TGGCACCAATGAGAATTAAGCCCAATATAGT
1 TGGCACCAATGAGATTTAAGCCTAATTTAGC
* ** *
16559758 TGGCACTAACAAGATTTTAAGCC-AAGTTTAGT
1 TGGCACCAATGAGA-TTTAAGCCTAA-TTTAGC
* *
16559790 TGGCACCCAGATGAGATTTGAGCCTAATTTAAC
1 TGGCA-CCA-ATGAGATTTAAGCCTAATTTAGC
* **** * * *
16559823 TAGCTTTGATGAGATTTAAACCCAATTTTGC
1 TGGCACCAATGAGATTTAAGCCTAATTTAGC
* * * * * **
16559854 TGGCTCTAATAATAATTAAGCCTAGCTTAGC
1 TGGCACCAATGAGATTTAAGCCTAATTTAGC
* *
16559885 TGGTACCAATGAGATTTTAAGCCCAATTTA
1 TGGCACCAATGAGA-TTTAAGCCTAATTTA
16559915 TTTGGTATTA
Statistics
Matches: 135, Mismatches: 47, Indels: 11
0.70 0.24 0.06
Matches are distributed among these distances:
31 85 0.63
32 28 0.21
33 16 0.12
34 6 0.04
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (31 bp):
TGGCACCAATGAGATTTAAGCCTAATTTAGC
Found at i:16560028 original size:31 final size:31
Alignment explanation
Indices: 16559990--16560111 Score: 120
Period size: 31 Copynumber: 3.9 Consensus size: 31
16559980 TAGCACATTG
** *
16559990 ATAAGATTTAAGCCCCGTATAACTAGCACCA
1 ATAAGATTTAAGCCCAATATAACTGGCACCA
** * * *
16560021 ATAAGATTTAAATCTAATTTAGA-TGGCACCG
1 ATAAGATTTAAGCCCAATATA-ACTGGCACCA
* *
16560052 ATAAGAATTAAGCCCAATATAGCTGGCACCA
1 ATAAGATTTAAGCCCAATATAACTGGCACCA
*
16560083 ATAAGATTTTAAGCCCAGTATAACTGGCA
1 ATAAGA-TTTAAGCCCAATATAACTGGCA
16560112 TGTAGATGAG
Statistics
Matches: 70, Mismatches: 18, Indels: 5
0.75 0.19 0.05
Matches are distributed among these distances:
31 50 0.71
32 20 0.29
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (31 bp):
ATAAGATTTAAGCCCAATATAACTGGCACCA
Found at i:16560206 original size:95 final size:95
Alignment explanation
Indices: 16560047--16560221 Score: 215
Period size: 95 Copynumber: 1.8 Consensus size: 95
16560037 ATTTAGATGG
* * *
16560047 CACCGATAAGAATTAAGCCCAATATAGCTGGCACCAATAAGATTTTAAGCCCAGTATAACTGGCA
1 CACCGATAAGAATTAAGCCCAATATAGCTAGCACCAATAAAATTTTAAGCCCAATATAACTGGCA
** *
16560112 TGTAGATGAGATTTAGTCCAGTTTAGCTAA
66 CCTAAATGAGATTTAGTCCAGTTTAGCTAA
* * *** * * **
16560142 CACCTATAAGAATTAAGCCCAGTATAGCTAGCATTGATAAAATTTTAAGCCTAATTTAGTTGGCA
1 CACCGATAAGAATTAAGCCCAATATAGCTAGCACCAATAAAATTTTAAGCCCAATATAACTGGCA
16560207 CCTAAATGAGATTTA
66 CCTAAATGAGATTTA
16560222 TGCCTAGTTT
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
95 65 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (95 bp):
CACCGATAAGAATTAAGCCCAATATAGCTAGCACCAATAAAATTTTAAGCCCAATATAACTGGCA
CCTAAATGAGATTTAGTCCAGTTTAGCTAA
Found at i:16560709 original size:51 final size:52
Alignment explanation
Indices: 16560654--16560791 Score: 154
Period size: 51 Copynumber: 2.7 Consensus size: 52
16560644 TATTTTAAAA
* * *
16560654 TTTTAAAGTTTTAAAACCTTTGTTTAAAGGAGCTTTTTCTAGAGATGAT-TT
1 TTTTAAAGTTTCAAAACCTTTGTTTAAAGGAGCTTTTTCTACACATGATATT
* * * * *
16560705 TTTTAAAGCTTCAAAATCTTTGTTTAGAGGAG-TTTTTTTCCACATGATATT
1 TTTTAAAGTTTCAAAACCTTTGTTTAAAGGAGCTTTTTCTACACATGATATT
* ***
16560756 TTTAAAAGTTTCAAAACCTCCATTTAAAGGAGCTTT
1 TTTTAAAGTTTCAAAACCTTTGTTTAAAGGAGCTTT
16560792 CCAAAATTCA
Statistics
Matches: 70, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
50 12 0.17
51 55 0.79
52 3 0.04
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (52 bp):
TTTTAAAGTTTCAAAACCTTTGTTTAAAGGAGCTTTTTCTACACATGATATT
Found at i:16561569 original size:145 final size:143
Alignment explanation
Indices: 16561285--16561657 Score: 405
Period size: 145 Copynumber: 2.6 Consensus size: 143
16561275 CTAAAAACCA
* * * * * *
16561285 TGATTGCACTTTAAGAAGGATAAAATTACTAAAATACCCTTTAAGAGTATTTTTGTAATTTGATT
1 TGATTACACTTCAAAAAGGGTAAAATTACTAAAATACCCTTTAAGGGTA-TTTTGTAATTTGACT
* * *
16561350 TTCATGAGGTC-ATTTTTTGCAAAATGCTCCAAATAATATTTTTAAATTATTTTATGATTTTTTG
65 TTCATGAGGTCAATTTTTTGCAAAAAGCTCCAAATAATATTTTGAAATTATTTTATGACTTTTTG
16561414 TGCATTAAAAGT-C
130 TGCATTAAAAGTCC
* * *
16561427 TAGATTACAACTT-AAAAAGTGTGAAATTACTAAAATACTCTTT-AGGGTTATTTCTGTAATTTG
1 T-GATTAC-ACTTCAAAAAGGGTAAAATTACTAAAATACCCTTTAAGGG-TATTT-TGTAATTTG
* * ** * * *
16561490 ACTTTCCTGAGATCAATTTTTTCGCAAAAAGCTTTAGATCATGA-TTTGATATTATTTTATGACT
62 ACTTTCATGAGGTCAATTTTTT-GCAAAAAGCTCCAAATAAT-ATTTTGAAATTATTTTATGACT
16561554 TTTTGTGCATTAAAAGTCC
125 TTTTGTGCATTAAAAGTCC
* * * * * *
16561573 TTATTGCACTTCGAAAAGGGTAAAATTCCTAAAATACGCTTTGAGGGTATTTTCGTAATTTGACT
1 TGATTACACTTCAAAAAGGGTAAAATTACTAAAATACCCTTTAAGGGTATTTT-GTAATTTGACT
*
16561638 TTCATGAGGTCATTTTTTTG
65 TTCATGAGGTCAATTTTTTG
16561658 TGAAATGCTA
Statistics
Matches: 192, Mismatches: 28, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
142 7 0.04
143 52 0.27
144 17 0.09
145 109 0.57
146 7 0.04
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (143 bp):
TGATTACACTTCAAAAAGGGTAAAATTACTAAAATACCCTTTAAGGGTATTTTGTAATTTGACTT
TCATGAGGTCAATTTTTTGCAAAAAGCTCCAAATAATATTTTGAAATTATTTTATGACTTTTTGT
GCATTAAAAGTCC
Found at i:16563549 original size:19 final size:19
Alignment explanation
Indices: 16563507--16563571 Score: 76
Period size: 20 Copynumber: 3.3 Consensus size: 19
16563497 AAACCTTCCT
*
16563507 CTAAACATACATGCAAACCC
1 CTAAACACACATGCAAA-CC
16563527 CTAAACACACATGCAAACC
1 CTAAACACACATGCAAACC
* * *
16563546 CTAAACCCTCATACAAACC
1 CTAAACACACATGCAAACC
16563565 CTTAAAC
1 C-TAAAC
16563572 CCCAAACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
19 19 0.47
20 21 0.52
ACGTcount: A:0.45, C:0.37, G:0.03, T:0.15
Consensus pattern (19 bp):
CTAAACACACATGCAAACC
Found at i:16563572 original size:20 final size:19
Alignment explanation
Indices: 16563515--16563573 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
16563505 CTCTAAACAT
* *
16563515 ACATGCAAACCCCTAAACAC
1 ACATACAAA-CCCTAAACCC
*
16563535 ACATGCAAACCCTAAACCC
1 ACATACAAACCCTAAACCC
*
16563554 TCATACAAACCCTTAAACCC
1 ACATACAAACCC-TAAACCC
16563574 CAAACCTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
19 19 0.54
20 16 0.46
ACGTcount: A:0.42, C:0.41, G:0.03, T:0.14
Consensus pattern (19 bp):
ACATACAAACCCTAAACCC
Found at i:16563873 original size:19 final size:19
Alignment explanation
Indices: 16563851--16563946 Score: 88
Period size: 19 Copynumber: 4.9 Consensus size: 19
16563841 CCCCATACCC
*
16563851 TAAATTAAACCCTAAACCA
1 TAAATCAAACCCTAAACCA
*
16563870 TAAATTAAACCCTAAACCAA
1 TAAATCAAACCCTAAACC-A
* * *
16563890 CCCCAAATCACACCTTAAACCA
1 ---TAAATCAAACCCTAAACCA
*
16563912 TAAATCAAA-CCTAAACCC
1 TAAATCAAACCCTAAACCA
16563930 TAAATCAAACCC-AAACC
1 TAAATCAAACCCTAAACC
16563947 CAAACCCCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
18 21 0.33
19 27 0.42
20 1 0.02
22 1 0.02
23 14 0.22
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (19 bp):
TAAATCAAACCCTAAACCA
Found at i:16563939 original size:12 final size:11
Alignment explanation
Indices: 16563917--16563964 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 11
16563907 AACCATAAAT
16563917 CAAACCTAAACC
1 CAAACC-AAACC
*
16563929 CTAAATCAAACC
1 C-AAACCAAACC
16563941 CAAACCCAAACCC
1 CAAA-CCAAA-CC
16563954 CAAACCAAACC
1 CAAACCAAACC
16563965 TATACCCCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
11 5 0.16
12 16 0.52
13 10 0.32
ACGTcount: A:0.50, C:0.44, G:0.00, T:0.06
Consensus pattern (11 bp):
CAAACCAAACC
Found at i:16563944 original size:24 final size:24
Alignment explanation
Indices: 16563917--16563964 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
16563907 AACCATAAAT
* * *
16563917 CAAACCTAAACCCTAAATCAAACC
1 CAAACCCAAACCCCAAACCAAACC
16563941 CAAACCCAAACCCCAAACCAAACC
1 CAAACCCAAACCCCAAACCAAACC
16563965 TATACCCCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.50, C:0.44, G:0.00, T:0.06
Consensus pattern (24 bp):
CAAACCCAAACCCCAAACCAAACC
Found at i:16563961 original size:18 final size:18
Alignment explanation
Indices: 16563935--16563979 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
16563925 AACCCTAAAT
16563935 CAAACCCAAACCCAAACCC
1 CAAA-CCAAACCCAAACCC
* *
16563954 CAAACCAAACCTATACCC
1 CAAACCAAACCCAAACCC
16563972 CAAACCAA
1 CAAACCAA
16563980 GCCTTAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.49, C:0.47, G:0.00, T:0.04
Consensus pattern (18 bp):
CAAACCAAACCCAAACCC
Found at i:16563971 original size:24 final size:25
Alignment explanation
Indices: 16563924--16563977 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
16563914 AATCAAACCT
* *
16563924 AAACCCTAAATCAAACCCAAA-CCC
1 AAACCCCAAACCAAACCCAAACCCC
* *
16563948 AAACCCCAAACCAAACCTATACCCC
1 AAACCCCAAACCAAACCCAAACCCC
16563973 AAACC
1 AAACC
16563978 AAGCCTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 17 0.68
25 8 0.32
ACGTcount: A:0.48, C:0.44, G:0.00, T:0.07
Consensus pattern (25 bp):
AAACCCCAAACCAAACCCAAACCCC
Found at i:16567686 original size:14 final size:15
Alignment explanation
Indices: 16567655--16567688 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
16567645 TTATAAAATT
16567655 ATTTATTATATTTAA
1 ATTTATTATATTTAA
*
16567670 ATTTATT-TATTTTA
1 ATTTATTATATTTAA
16567684 ATTTA
1 ATTTA
16567689 CAAAAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTATTATATTTAA
Found at i:16569980 original size:14 final size:14
Alignment explanation
Indices: 16569961--16569987 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
16569951 TAGAATTGAT
16569961 TTTTTATTTTTTAC
1 TTTTTATTTTTTAC
16569975 TTTTTATTTTTTA
1 TTTTTATTTTTTA
16569988 AAAAAATTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTTATTTTTTAC
Found at i:16570171 original size:13 final size:13
Alignment explanation
Indices: 16570149--16570186 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
16570139 TTAATAAAAT
16570149 TATT-ATTTAATA
1 TATTAATTTAATA
*
16570161 TTTTAATTTAATA
1 TATTAATTTAATA
*
16570174 TATTAACTTAATA
1 TATTAATTTAATA
16570187 AAAATACTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 3 0.14
13 19 0.86
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (13 bp):
TATTAATTTAATA
Found at i:16571158 original size:20 final size:19
Alignment explanation
Indices: 16571116--16571170 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 19
16571106 ATCAATAAGC
**
16571116 AAAAAATAAA-ACCTAAAT
1 AAAAAATAAACAAATAAAT
* *
16571134 AAAAAATGAATAAATAAAT
1 AAAAAATAAACAAATAAAT
16571153 ATAAAAATAAACAAATAA
1 A-AAAAATAAACAAATAA
16571171 GCAGAAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 9 0.30
19 7 0.23
20 14 0.47
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (19 bp):
AAAAAATAAACAAATAAAT
Found at i:16575011 original size:15 final size:15
Alignment explanation
Indices: 16574977--16575017 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
16574967 TTTTTAATTG
*
16574977 TTGTTGATTGCTTAG
1 TTGTTGATTGCTTAA
*
16574992 CTGTTGATTGCTTAA
1 TTGTTGATTGCTTAA
*
16575007 TTGTTTATTGC
1 TTGTTGATTGC
16575018 CTTGCTGAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.15, C:0.10, G:0.22, T:0.54
Consensus pattern (15 bp):
TTGTTGATTGCTTAA
Found at i:16576660 original size:70 final size:71
Alignment explanation
Indices: 16576569--16576737 Score: 182
Period size: 70 Copynumber: 2.4 Consensus size: 71
16576559 GTCAAAGACC
* * * * * * * *
16576569 TAAATGCTCACTAAATTATGCAAATGCATGGT-TCTAACTATGATGCAAATGCAATATTC-AAAT
1 TAAATCCTCACCAAATGATGCAAATGCATGGTAT-AAACAATGATACAAATACAATATTCAAAAC
16576632 AATGATT
65 AATGATT
* ** *
16576639 TAGATGTTCACCAAATGATGCAAATGCATGGTATAAACAATGATACAAATATAATATTCAAAACA
1 TAAATCCTCACCAAATGATGCAAATGCATGGTATAAACAATGATACAAATACAATATTCAAAACA
*
16576704 ATTATT
66 ATGATT
*
16576710 TAAATCCTCACCAAATG-TGCATATGCAT
1 TAAATCCTCACCAAATGATGCAAATGCAT
16576738 CAAACAGTTA
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
70 58 0.71
71 24 0.29
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (71 bp):
TAAATCCTCACCAAATGATGCAAATGCATGGTATAAACAATGATACAAATACAATATTCAAAACA
ATGATT
Found at i:16576801 original size:50 final size:50
Alignment explanation
Indices: 16576739--16576836 Score: 142
Period size: 50 Copynumber: 2.0 Consensus size: 50
16576729 CATATGCATC
* *
16576739 AAACAGTTATGCAATTTATAAACTCCCCAAATGATGTAAATGCATGATAT
1 AAACAATTATGCAATTTATAAACTCCCCAAATGATGCAAATGCATGATAT
* ***
16576789 AAACAATTATGCAATTTATAAATTCTTTAAATGATGCAAATGCATGAT
1 AAACAATTATGCAATTTATAAACTCCCCAAATGATGCAAATGCATGAT
16576837 CCAAATAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (50 bp):
AAACAATTATGCAATTTATAAACTCCCCAAATGATGCAAATGCATGATAT
Found at i:16576847 original size:50 final size:50
Alignment explanation
Indices: 16576738--16576848 Score: 141
Period size: 50 Copynumber: 2.2 Consensus size: 50
16576728 GCATATGCAT
* *
16576738 CAAACAGTTATGCAATTTATAAACTCCCCAAATGATGTAAATGCATGATA
1 CAAACAATTATGCAATTTATAAACTCCCCAAATGATGCAAATGCATGATA
* * *** *
16576788 TAAACAATTATGCAATTTATAAATTCTTTAAATGATGCAAATGCATGATC
1 CAAACAATTATGCAATTTATAAACTCCCCAAATGATGCAAATGCATGATA
*
16576838 CAAATAATTAT
1 CAAACAATTAT
16576849 ATAGATGCAA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.32
Consensus pattern (50 bp):
CAAACAATTATGCAATTTATAAACTCCCCAAATGATGCAAATGCATGATA
Found at i:16581944 original size:2 final size:2
Alignment explanation
Indices: 16581937--16581992 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
16581927 TAACCTCCAG
16581937 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
16581979 CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT
16581993 ATATATATAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:16581997 original size:2 final size:2
Alignment explanation
Indices: 16581992--16582020 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
16581982 TCTCTCTCTC
16581992 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
16582021 TCATTTTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:16582163 original size:26 final size:26
Alignment explanation
Indices: 16582103--16582163 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
16582093 TTTTTTGGAA
* *
16582103 TATT-GTTCACATTTTTGGATTGCTC
1 TATTAGTTCACATTTTTGGACTACTC
*
16582128 TTATTTGTTCACATTTTTGGACTACTC
1 -TATTAGTTCACATTTTTGGACTACTC
16582155 -ATTGAGTTC
1 TATT-AGTTC
16582164 TCATCTCACA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 3 0.10
26 8 0.27
27 19 0.63
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.51
Consensus pattern (26 bp):
TATTAGTTCACATTTTTGGACTACTC
Found at i:16586919 original size:22 final size:22
Alignment explanation
Indices: 16586891--16586932 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
16586881 AAATTATTGA
**
16586891 ATATTAATTTTTTAAATTAATT
1 ATATTAATTAATTAAATTAATT
16586913 ATATTAATTAATTAAATTAA
1 ATATTAATTAATTAAATTAA
16586933 ATTTCAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATATTAATTAATTAAATTAATT
Found at i:16587804 original size:29 final size:30
Alignment explanation
Indices: 16587771--16587854 Score: 100
Period size: 29 Copynumber: 2.8 Consensus size: 30
16587761 AGATTAATTT
*
16587771 ATATTAAGAGTTTATTTAGATATAAA-TAA
1 ATATTAAGAGTTTATTTAGATACAAATTAA
* *
16587800 ATATTAAGGGTTTATTTGGATACAAATTAA
1 ATATTAAGAGTTTATTTAGATACAAATTAA
* *
16587830 AAATTACA-AATTTATTTAGATACAA
1 ATATTA-AGAGTTTATTTAGATACAA
16587855 TAAAAGTATA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
29 23 0.50
30 22 0.48
31 1 0.02
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.39
Consensus pattern (30 bp):
ATATTAAGAGTTTATTTAGATACAAATTAA
Found at i:16587876 original size:29 final size:30
Alignment explanation
Indices: 16587781--16587876 Score: 90
Period size: 29 Copynumber: 3.3 Consensus size: 30
16587771 ATATTAAGAG
* * ***
16587781 TTTATTTAGATATAAA-TAAATATTAAGGG
1 TTTATTTAGATACAAATTAAAAATTAAAAA
* *
16587810 TTTATTTGGATACAAATTAAAAATTACAAA
1 TTTATTTAGATACAAATTAAAAATTAAAAA
*
16587840 TTTATTTAGATAC-AA-TAAAAGTATAAAAA
1 TTTATTTAGATACAAATTAAAAAT-TAAAAA
16587869 TTTATTTA
1 TTTATTTA
16587877 AATAATGTAA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
28 6 0.11
29 29 0.53
30 20 0.36
ACGTcount: A:0.48, C:0.03, G:0.08, T:0.41
Consensus pattern (30 bp):
TTTATTTAGATACAAATTAAAAATTAAAAA
Found at i:16588523 original size:2 final size:2
Alignment explanation
Indices: 16588518--16588558 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
16588508 TATATATATA
16588518 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
16588559 ATAATAAGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:16597835 original size:21 final size:21
Alignment explanation
Indices: 16597775--16597837 Score: 56
Period size: 22 Copynumber: 3.0 Consensus size: 21
16597765 CATTGTCATG
* *
16597775 AATGATATGGAAGGTCTCATA
1 AATGATATGGAAGATCTTATA
* * *
16597796 ATAAGACAT-GAACATTCTTATA
1 A-ATGATATGGAAGA-TCTTATA
16597818 AATGATATGGAAGATCTTAT
1 AATGATATGGAAGATCTTAT
16597838 TAGAAAATGT
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
21 15 0.48
22 16 0.52
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (21 bp):
AATGATATGGAAGATCTTATA
Found at i:16597942 original size:86 final size:86
Alignment explanation
Indices: 16597852--16598209 Score: 276
Period size: 86 Copynumber: 4.2 Consensus size: 86
16597842 AAATGTGAGT
* * *
16597852 ATTCTCACAAATGACATGGAAGACCTCATAAGAAGAGGTGAGCATTCTCACAAATGACATGAAAG
1 ATTCTCACAAATGACATGAAAGACCTCATAAGAAGAGGTGAGCATTCTCACGAATGATATGAAAG
* * *
16597917 ACCTTATTAAAAGAAGTTAAC
66 ACCTCATTAAAAGAGGTAAAC
* * * * * ** *
16597938 ATTCTGATAAATGACATGAAAAACCTTATTAGAAGAAATGAAG-ATTCTCGCGAATGATATGAAA
1 ATTCTCACAAATGACATGAAAGACCTCATAAGAAGAGGTG-AGCATTCTCACGAATGATATGAAA
* * * * *
16598002 GACATCATTAGAATAGGTGAGC
65 GACCTCATTAAAAGAGGTAAAC
* * * * * * * ** *
16598024 ATTCTCACAAATAATATGAAAGAACTCATTAGAAAAGGTGACCATTCTCATGAATGATACCAAAA
1 ATTCTCACAAATGACATGAAAGACCTCATAAGAAGAGGTGAGCATTCTCACGAATGATATGAAAG
16598089 ACCTCA-TAAGAAGAGGTAAAC
66 ACCTCATTAA-AAGAGGTAAAC
* * * ** * *
16598110 ATTCTCACAAATGATATGGAAGACTTCATAAGAAGACAT-AGGCATTTTCATGAATGATATGAAA
1 ATTCTCACAAATGACATGAAAGACCTCATAAGAAGAGGTGA-GCATTCTCACGAATGATATGAAA
* * **
16598174 AACCTC-GTAAGAAG-GCACAAAC
65 GACCTCATTAA-AAGAG-GTAAAC
16598196 ATTCTCACAAATGA
1 ATTCTCACAAATGA
16598210 TGAAGAAGAT
Statistics
Matches: 213, Mismatches: 53, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
85 5 0.02
86 206 0.97
87 2 0.01
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (86 bp):
ATTCTCACAAATGACATGAAAGACCTCATAAGAAGAGGTGAGCATTCTCACGAATGATATGAAAG
ACCTCATTAAAAGAGGTAAAC
Found at i:16597971 original size:129 final size:128
Alignment explanation
Indices: 16597804--16598145 Score: 355
Period size: 129 Copynumber: 2.6 Consensus size: 128
16597794 TAATAAGACA
* * * * * *
16597804 TGAACATTCTTATAAATGATATGGAAGATCTTATTAGAAAATGTGAGTATTCTCACAAATGACAT
1 TGAACATTCTCATAAATGATATGAAAAACCTTATTAGAAAATGTAAG-ATTCTCACAAATGATAT
* * * *
16597869 GGAAGACCTCATAAGAAGAGGTGAGCATTCTCACAAATGACATGAAAGACCTTATTA-AAAGAAG
65 GGAAGACATCATAAGAAGAGGTGAGCATTCTCACAAATAACATGAAAGAACTCATTAGAAA-AAG
* * * * *
16597933 TTAACATTCTGATAAATGACATGAAAAACCTTATTAGAAGAAATG-AAGATTCTCGCGAATGATA
1 TGAACATTCTCATAAATGATATGAAAAACCTTATTAG-A-AAATGTAAGATTCTCACAAATGATA
* * * * *
16597997 TGAAAGACATCATTAGAATAGGTGAGCATTCTCACAAATAATATGAAAGAACTCATTAGAAAAGG
64 TGGAAGACATCATAAGAAGAGGTGAGCATTCTCACAAATAACATGAAAGAACTCATTAGAAAAAG
* * ** * * * * *
16598062 TGACCATTCTCATGAATGATACCAAAAACCTCATAAGAAGAGGTAAACATTCTCACAAATGATAT
1 TGAACATTCTCATAAATGATATGAAAAACCTTATTAGAAAATGT-AAGATTCTCACAAATGATAT
*
16598127 GGAAGACTTCATAAGAAGA
65 GGAAGACATCATAAGAAGA
16598146 CATAGGCATT
Statistics
Matches: 171, Mismatches: 37, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
127 3 0.02
128 1 0.01
129 156 0.91
130 6 0.04
131 5 0.03
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (128 bp):
TGAACATTCTCATAAATGATATGAAAAACCTTATTAGAAAATGTAAGATTCTCACAAATGATATG
GAAGACATCATAAGAAGAGGTGAGCATTCTCACAAATAACATGAAAGAACTCATTAGAAAAAG
Found at i:16598139 original size:43 final size:43
Alignment explanation
Indices: 16597751--16598145 Score: 244
Period size: 43 Copynumber: 9.2 Consensus size: 43
16597741 AATACCTAAA
* ** * *
16597751 AAGAAGAGGTGAAACATTGTCATGAATGATATGGAAG-GTCTCAT
1 AAGAAGAGGTG-AACATTCTCACAAATGATATGAAAGACT-TCAT
* ** * * *
16597795 AATAAGACATGAACATTCTTATAAATGATATGGAAGATCTT-AT
1 AAGAAGAGGTGAACATTCTCACAAATGATATGAAAGA-CTTCAT
* * * ** * * *
16597838 TAGAAAATGTGAGTATTCTCACAAATGACATGGAAGACCTCAT
1 AAGAAGAGGTGAACATTCTCACAAATGATATGAAAGACTTCAT
* *
16597881 AAGAAGAGGTGAGCATTCTCACAAATGACATGAAAGACCTT-ATT
1 AAGAAGAGGTGAACATTCTCACAAATGATATGAAAGA-CTTCA-T
* * * * * *
16597925 AA-AAGAAGTTAACATTCTGATAAATGACATGAAAAACCTT-AT
1 AAGAAGAGGTGAACATTCTCACAAATGATATGAAAGA-CTTCAT
* ** * * * *
16597967 TAGAAGAAATGAAGATTCTCGCGAATGATATGAAAGACATCAT
1 AAGAAGAGGTGAACATTCTCACAAATGATATGAAAGACTTCAT
* * * *
16598010 TAGAATAGGTGAGCATTCTCACAAATAATATGAAAGAAC-TCAT
1 AAGAAGAGGTGAACATTCTCACAAATGATATGAAAG-ACTTCAT
* * * ** ** * *
16598053 TAGAAAAGGTGACCATTCTCATGAATGATACCAAAAACCTCAT
1 AAGAAGAGGTGAACATTCTCACAAATGATATGAAAGACTTCAT
* *
16598096 AAGAAGAGGTAAACATTCTCACAAATGATATGGAAGACTTCAT
1 AAGAAGAGGTGAACATTCTCACAAATGATATGAAAGACTTCAT
16598139 AAGAAGA
1 AAGAAGA
16598146 CATAGGCATT
Statistics
Matches: 274, Mismatches: 68, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
42 8 0.03
43 249 0.91
44 16 0.06
45 1 0.00
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.25
Consensus pattern (43 bp):
AAGAAGAGGTGAACATTCTCACAAATGATATGAAAGACTTCAT
Found at i:16598185 original size:43 final size:43
Alignment explanation
Indices: 16597723--16598202 Score: 149
Period size: 43 Copynumber: 11.1 Consensus size: 43
16597713 GTTGTAACTT
* * * **
16597723 TTCTAATGAATGATAT-AAAATACCTAAAAAGAAGAGGTGAAACA
1 TTCTCATGAATGATATGAAAA-ACCTCATAAGAAGACAT-AAACA
* * *** * *
16597767 TTGTCATGAATGATATGGAAGGTCTCATAATAAGACATGAACA
1 TTCTCATGAATGATATGAAAAACCTCATAAGAAGACATAAACA
* * * * * * * * ** * **
16597810 TTCTTATAAATGATATGGAAGATCTTATTAGAAAATGTGAGTA
1 TTCTCATGAATGATATGAAAAACCTCATAAGAAGACATAAACA
** * * * ** * *
16597853 TTCTCACAAATGACATGGAAGACCTCATAAGAAGAGGTGAGCA
1 TTCTCATGAATGATATGAAAAACCTCATAAGAAGACATAAACA
** * * * *
16597896 TTCTCACAAATGACATGAAAGACCTTATTAA-AAGA-AGTTAACA
1 TTCTCATGAATGATATGAAAAACCTCA-TAAGAAGACA-TAAACA
* * * * * * * *
16597939 TTCTGATAAATGACATGAAAAACCTTATTAGAAGAAATGAAGA
1 TTCTCATGAATGATATGAAAAACCTCATAAGAAGACATAAACA
** * * * * ** * *
16597982 TTCTCGCGAATGATATGAAAGACATCATTAGAATAGGTGAGCA
1 TTCTCATGAATGATATGAAAAACCTCATAAGAAGACATAAACA
** * * * ** * *
16598025 TTCTCACAAATAATATGAAAGAA-CTCATTAGAAAAGGTGACCA
1 TTCTCATGAATGATATGAAA-AACCTCATAAGAAGACATAAACA
** **
16598068 TTCTCATGAATGATACCAAAAACCTCATAAGAAGAGGTAAACA
1 TTCTCATGAATGATATGAAAAACCTCATAAGAAGACATAAACA
** * * * **
16598111 TTCTCACAAATGATATGGAAGACTTCATAAGAAGACATAGGCA
1 TTCTCATGAATGATATGAAAAACCTCATAAGAAGACATAAACA
* * * *
16598154 TTTTCATGAATGATATGAAAAACCTCGTAAGAAGGCACAAACA
1 TTCTCATGAATGATATGAAAAACCTCATAAGAAGACATAAACA
16598197 TTCTCA
1 TTCTCA
16598203 CAAATGATGA
Statistics
Matches: 333, Mismatches: 96, Indels: 15
0.75 0.22 0.03
Matches are distributed among these distances:
42 4 0.01
43 298 0.89
44 29 0.09
45 2 0.01
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (43 bp):
TTCTCATGAATGATATGAAAAACCTCATAAGAAGACATAAACA
Found at i:16598209 original size:43 final size:43
Alignment explanation
Indices: 16597852--16598210 Score: 151
Period size: 43 Copynumber: 8.3 Consensus size: 43
16597842 AAATGTGAGT
* * * * * *
16597852 ATTCTCACAAATGACATGGAAGACCTCATAAGAAGAG-GTGAGC
1 ATTCTCACAAATGATATGAAAAACCTCATAAGAAG-GCATAAAC
* * * * *
16597895 ATTCTCACAAATGACATGAAAGACCTTATTAA-AA-GAAGTTAAC
1 ATTCTCACAAATGATATGAAAAACCTCA-TAAGAAGGCA-TAAAC
* * * * * ** * *
16597938 ATTCTGATAAATGACATGAAAAACCTTATTAGAAGAAATGAAG
1 ATTCTCACAAATGATATGAAAAACCTCATAAGAAGGCATAAAC
* * * * * * *
16597981 ATTCTCGCGAATGATATGAAAGACATCATTAGAATAGG--TGAGC
1 ATTCTCACAAATGATATGAAAAACCTCATAAG-A-AGGCATAAAC
* * * *
16598024 ATTCTCACAAATAATATGAAAGAA-CTCATTAGAAAAGG--TGACC
1 ATTCTCACAAATGATATGAAA-AACCTCA-TA-AGAAGGCATAAAC
** ** *
16598067 ATTCTCATGAATGATACCAAAAACCTCATAAGAAGAG-GTAAAC
1 ATTCTCACAAATGATATGAAAAACCTCATAAGAAG-GCATAAAC
* * * * **
16598110 ATTCTCACAAATGATATGGAAGACTTCATAAGAAGACATAGGC
1 ATTCTCACAAATGATATGAAAAACCTCATAAGAAGGCATAAAC
* ** * *
16598153 ATTTTCATGAATGATATGAAAAACCTCGTAAGAAGGCACAAAC
1 ATTCTCACAAATGATATGAAAAACCTCATAAGAAGGCATAAAC
16598196 ATTCTCACAAATGAT
1 ATTCTCACAAATGAT
16598211 GAAGAAGATC
Statistics
Matches: 238, Mismatches: 64, Indels: 28
0.72 0.19 0.08
Matches are distributed among these distances:
41 5 0.02
42 7 0.03
43 214 0.90
44 9 0.04
45 3 0.01
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.24
Consensus pattern (43 bp):
ATTCTCACAAATGATATGAAAAACCTCATAAGAAGGCATAAAC
Found at i:16598241 original size:86 final size:86
Alignment explanation
Indices: 16598066--16598255 Score: 208
Period size: 86 Copynumber: 2.2 Consensus size: 86
16598056 AAAAGGTGAC
* ** *
16598066 CATTCTCATGAATGATACCAAAAACCTCATAAGAAGAGGTAAACATTCTCACAAATGATATGGAA
1 CATTCTCATGAATGATATCAAAAACCTCATAAGAAGAGACAAACATTCTCACAAATGATATAGAA
*
16598131 GACTTCATAAGAAGACATAGG
66 GACTTCATAACAAGACATAGG
* * *
16598152 CATTTTCATGAATGATATGAAAAACCTCGTAAGAAG-GCACAAACATTCTCACAAATGATGA-AG
1 CATTCTCATGAATGATATCAAAAACCTCATAAGAAGAG-ACAAACATTCTCACAAATGAT-ATAG
* *
16598215 AAGA-TCTCATACCAAGTCAT-GAG
64 AAGACT-TCATAACAAGACATAG-G
* *
16598238 CATTCTCATAAAAGATAT
1 CATTCTCATGAATGATAT
16598256 AAGACTAATT
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
85 3 0.03
86 83 0.95
87 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (86 bp):
CATTCTCATGAATGATATCAAAAACCTCATAAGAAGAGACAAACATTCTCACAAATGATATAGAA
GACTTCATAACAAGACATAGG
Found at i:16599297 original size:16 final size:15
Alignment explanation
Indices: 16599272--16599301 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
16599262 TAAATTTCCT
16599272 ATAGTTGAATGCTTC
1 ATAGTTGAATGCTTC
16599287 ATAGCTTGAATGCTT
1 ATAG-TTGAATGCTT
16599302 GGCTCTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (15 bp):
ATAGTTGAATGCTTC
Found at i:16605491 original size:21 final size:22
Alignment explanation
Indices: 16605465--16605506 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
16605455 AAAATCAAAA
*
16605465 GATGATAATGTAGA-GGATTTG
1 GATGATAATATAGAGGGATTTG
16605486 GATGATAATATAGAGGGATTT
1 GATGATAATATAGAGGGATTT
16605507 TCTACTTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.36, C:0.00, G:0.31, T:0.33
Consensus pattern (22 bp):
GATGATAATATAGAGGGATTTG
Found at i:16608015 original size:17 final size:20
Alignment explanation
Indices: 16607971--16608017 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
16607961 AATCAAATTT
*
16607971 AATTGAATTAATTTTTATAA
1 AATTAAATTAATTTTTATAA
16607991 AATATAAATT-ATTTTT-T-A
1 AAT-TAAATTAATTTTTATAA
16608009 AATTAAATT
1 AATTAAATT
16608018 CAAATATGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 6 0.24
18 4 0.16
19 1 0.04
20 9 0.36
21 5 0.20
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
AATTAAATTAATTTTTATAA
Found at i:16615945 original size:101 final size:100
Alignment explanation
Indices: 16615758--16615950 Score: 305
Period size: 101 Copynumber: 1.9 Consensus size: 100
16615748 TGATACCTTA
* *
16615758 AGAATTGTTTAGAATTAAATATGATTTGAAAGCTGGTTTTATCTATTGTTGTCATAGTTTAGATG
1 AGAATTGTTTAGAATTAAATATGATTTGAAAGCTGGTTTTATCTATTGCTATCATAGTTTAGATG
*
16615823 TTTGGAACTCCATATGGGATGACTAACATACATTG
66 TTTGGAACTCCATATGAGATGACTAACATACATTG
* * *
16615858 AGAATTGTGTTGGAATTGAATATGATTTGAAAGCTGGTTTTTTCTATTGCTATCATAGTTTAGAT
1 AGAATTGT-TTAGAATTAAATATGATTTGAAAGCTGGTTTTATCTATTGCTATCATAGTTTAGAT
* *
16615923 GTTTGGAACTCCTTATTAGATGACTAAC
65 GTTTGGAACTCCATATGAGATGACTAAC
16615951 TTGGATTTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
100 8 0.10
101 76 0.90
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (100 bp):
AGAATTGTTTAGAATTAAATATGATTTGAAAGCTGGTTTTATCTATTGCTATCATAGTTTAGATG
TTTGGAACTCCATATGAGATGACTAACATACATTG
Found at i:16617978 original size:16 final size:16
Alignment explanation
Indices: 16617932--16617979 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
16617922 CCCAATTCGA
*
16617932 TTTTTATTTTGTATTA
1 TTTTTATTTTGTATTT
16617948 TTTTTATTTT-TATTT
1 TTTTTATTTTGTATTT
*
16617963 TTTTTCTTTTGTATTT
1 TTTTTATTTTGTATTT
16617979 T
1 T
16617980 ATGTATTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 13 0.45
16 16 0.55
ACGTcount: A:0.12, C:0.02, G:0.04, T:0.81
Consensus pattern (16 bp):
TTTTTATTTTGTATTT
Found at i:16617988 original size:16 final size:15
Alignment explanation
Indices: 16617932--16618003 Score: 65
Period size: 16 Copynumber: 4.6 Consensus size: 15
16617922 CCCAATTCGA
16617932 TTTTTATTTTGTATT
1 TTTTTATTTTGTATT
16617947 ATTTTTATTTT-TATTT
1 -TTTTTATTTTGTA-TT
*
16617963 TTTTTCTTTTGTATT
1 TTTTTATTTTGTATT
* *
16617978 TTATGTATTTTATTATT
1 TT-TTTATTTT-GTATT
*
16617995 TATTTATTT
1 TTTTTATTT
16618004 ATTTCTGTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
15 15 0.33
16 26 0.57
17 5 0.11
ACGTcount: A:0.17, C:0.01, G:0.04, T:0.78
Consensus pattern (15 bp):
TTTTTATTTTGTATT
Found at i:16617999 original size:4 final size:4
Alignment explanation
Indices: 16617977--16618079 Score: 52
Period size: 4 Copynumber: 24.8 Consensus size: 4
16617967 TCTTTTGTAT
* * *
16617977 TTTA TGTA TTT- TATTA TTTA TTTA TTTA TTTC TGTTA -ATA TTTA TATGTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA T-T-TA
* * *
16618027 TTTTA TTTA TATA GTTA TATA TTTA -TTA TTATA TTATAA TTTA TTTA
1 -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TT-T-A TTTA TTTA
16618074 -TTA TTT
1 TTTA TTT
16618080 TTTTTATCTT
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
3 9 0.12
4 47 0.62
5 13 0.17
6 6 0.08
7 1 0.01
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:16618085 original size:16 final size:16
Alignment explanation
Indices: 16617932--16618109 Score: 55
Period size: 16 Copynumber: 10.7 Consensus size: 16
16617922 CCCAATTCGA
*
16617932 TTTTTATTT-TGTATTA
1 TTTTTATTTAT-TATTT
16617948 TTTTTATTT-TTATTT
1 TTTTTATTTATTATTT
*
16617963 TTTTTCTTT-TGTATTT
1 TTTTTATTTAT-TATTT
* *
16617979 TATGTATTTTATTA-TT
1 TTTTTA-TTTATTATTT
* *
16617995 TATTTATTTATT-TCTG
1 TTTTTATTTATTAT-TT
** *
16618011 TTAATATTTA-TATGT
1 TTTTTATTTATTATTT
*
16618026 ATTTTATTTATATAGTTAT
1 TTTTTATTTAT-TA-TT-T
*
16618045 ATATTTA-TTATTATATT
1 -TTTTTATTTATTAT-TT
*
16618062 ATAATTTATTTATTATTT
1 -T-TTTTATTTATTATTT
*
16618080 TTTTTATCTTGTAATATTT
1 TTTTTA--TT-TATTATTT
*
16618099 TTTTGATTTAT
1 TTTTTATTTAT
16618110 CTTATTTTAT
Statistics
Matches: 123, Mismatches: 22, Indels: 34
0.69 0.12 0.19
Matches are distributed among these distances:
15 27 0.22
16 40 0.33
17 14 0.11
18 14 0.11
19 24 0.20
20 4 0.03
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.70
Consensus pattern (16 bp):
TTTTTATTTATTATTT
Found at i:16618508 original size:19 final size:19
Alignment explanation
Indices: 16618484--16618520 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
16618474 ATTCCGATTG
*
16618484 AATTTTTTGGCGAAATTTA
1 AATTTTTCGGCGAAATTTA
*
16618503 AATTTTTCGGTGAAATTT
1 AATTTTTCGGCGAAATTT
16618521 CGGTCAACTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (19 bp):
AATTTTTCGGCGAAATTTA
Found at i:16619064 original size:11 final size:11
Alignment explanation
Indices: 16619048--16619124 Score: 68
Period size: 11 Copynumber: 6.8 Consensus size: 11
16619038 TTAATATTCT
*
16619048 TTTTATCTTTA
1 TTTTATTTTTA
16619059 TTTTATTTTTA
1 TTTTATTTTTA
16619070 TTTT-TGTTTTA
1 TTTTAT-TTTTA
* *
16619081 CTTT-TCTTTA
1 TTTTATTTTTA
16619091 TTTTATTTTTTTA
1 TTTTA--TTTTTA
16619104 TTTTCATTTTTA
1 TTTT-ATTTTTA
*
16619116 TTTTGTTTT
1 TTTTATTTT
16619125 ATTATTCAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
10 8 0.15
11 27 0.49
12 10 0.18
13 9 0.16
14 1 0.02
ACGTcount: A:0.13, C:0.05, G:0.03, T:0.79
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:16619065 original size:5 final size:5
Alignment explanation
Indices: 16619048--16619127 Score: 58
Period size: 5 Copynumber: 15.4 Consensus size: 5
16619038 TTAATATTCT
* *
16619048 TTTTA TCTTTA TTTTA TTTTTA TTTTTG TTTTA CTTTT- CTTTA TTTTA
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA TTTTA
*
16619096 -TTT- TTTTA TTTTCA TTTTTA TTTTG TTTTA TT
1 TTTTA TTTTA TTTT-A -TTTTA TTTTA TTTTA TT
16619128 ATTCAATTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
4 9 0.15
5 27 0.44
6 21 0.34
7 4 0.07
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:16619068 original size:6 final size:6
Alignment explanation
Indices: 16619047--16619119 Score: 58
Period size: 6 Copynumber: 11.7 Consensus size: 6
16619037 GTTAATATTC
* * * *
16619047 TTTTTA TCTTTA -TTTTA TTTTTA TTTTTG TTTTACTT TTCTTTA TTTTATT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT--TA TT-TTTA TTTT-TA
*
16619098 TTTTTA TTTTCA TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTT
16619120 GTTTTATTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
5 4 0.08
6 36 0.68
7 8 0.15
8 3 0.06
9 2 0.04
ACGTcount: A:0.14, C:0.05, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:16619088 original size:40 final size:40
Alignment explanation
Indices: 16619044--16619119 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
16619034 TTAGTTAATA
* * *
16619044 TTCTTT-TTATCTTTATTTTATTTTTATTTTTGTTTTACTT
1 TTCTTTATTATATTT-TTTTATTTTCATTTTTATTTTACTT
*
16619084 TTCTTTATTTTATTTTTTTATTTTCATTTTTATTTT
1 TTCTTTATTATATTTTTTTATTTTCATTTTTATTTT
16619120 GTTTTATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 25 0.81
41 6 0.19
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.79
Consensus pattern (40 bp):
TTCTTTATTATATTTTTTTATTTTCATTTTTATTTTACTT
Found at i:16619129 original size:13 final size:12
Alignment explanation
Indices: 16619047--16619130 Score: 57
Period size: 13 Copynumber: 6.7 Consensus size: 12
16619037 GTTAATATTC
16619047 TTTTTATCTTTAT
1 TTTTTAT-TTTAT
*
16619060 TTTAT-TTTTA-
1 TTTTTATTTTAT
*
16619070 TTTTTGTTTTACTT
1 TTTTTATTTTA--T
16619084 TTCTTTATTTTATT
1 TT-TTTATTTTA-T
16619098 TTTTTATTTTCA-
1 TTTTTATTTT-AT
*
16619110 TTTTTATTTTGT
1 TTTTTATTTTAT
16619122 TTTATTATT
1 TTT-TTATT
16619131 CAATTTTCTT
Statistics
Matches: 59, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
10 4 0.07
11 9 0.15
12 14 0.24
13 17 0.29
14 7 0.12
15 8 0.14
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:16619236 original size:57 final size:57
Alignment explanation
Indices: 16619154--16619610 Score: 524
Period size: 57 Copynumber: 7.7 Consensus size: 57
16619144 ATAAAAATAA
*
16619154 AAAAATATACTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAAATTTC
1 AAAAA-ATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* *
16619212 -AAAAATGTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
1 AAAAAAT-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * *
16619269 AAAAAAAAAACTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
1 ----AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
* *
16619332 CAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
16619389 AAAAAAAAAAAGTTTTTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATCAAAGTTTC
1 -----AAAAAA--TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
* * * *
16619454 CAAAAATATTCTTGAGGAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * *
16619511 AAAAAAAAGTTTTTG-GGGAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTCC
1 AAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-ATTT-C
*
16619571 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTC
16619611 TCTGCACAAG
Statistics
Matches: 343, Mismatches: 34, Indels: 42
0.82 0.08 0.10
Matches are distributed among these distances:
56 8 0.02
57 95 0.28
58 85 0.25
59 14 0.04
60 37 0.11
62 50 0.15
63 8 0.02
64 39 0.11
65 7 0.02
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:16619460 original size:122 final size:119
Alignment explanation
Indices: 16619164--16619610 Score: 654
Period size: 122 Copynumber: 3.7 Consensus size: 119
16619154 AAAAATATAC
* * * *
16619164 TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAAT-AAAATTT-CAAAAATGTTTTTTGA
1 TTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCCAAAAAT-ATTTTTGA
* *
16619227 GGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAAAAACTT
65 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAAAGTT
*
16619282 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAATATTTTTGA
1 TTTTT-AGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCCAAAAATATTTTTGA
*
16619347 GAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAAAAGTTT
65 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC-AAAAAAAAAAG-TT
* *
16619404 TTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATCAAAGTTTCCAAAAATATTCTTGA
1 TTTTT-AGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCCAAAAATATTTTTGA
* *
16619469 GGAAAAGTTAAAAGTATCAATTTTTCTTAAAAATAAAATTTC--AAAAAAAAG--
65 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAAAGTT
* *
16619520 TTTTTGGGGAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTCCAAAAAATATTTTTG
1 TTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAG-TTTCC-AAAAATATTTTTG
*
16619585 GGGAAAAGTTGAAAGTATCAATTTTC
64 AGGAAAAGTTGAAAGTATCAATTTTC
16619611 TCTGCACAAG
Statistics
Matches: 300, Mismatches: 22, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
115 37 0.12
116 10 0.03
117 35 0.12
118 5 0.02
119 41 0.14
120 53 0.18
121 17 0.06
122 102 0.34
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (119 bp):
TTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCCAAAAATATTTTTGAG
GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAAAGTT
Found at i:16623403 original size:20 final size:21
Alignment explanation
Indices: 16623359--16623403 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
16623349 AAAAATTCAT
*
16623359 ATTTTTCAAAAAAAAACCTAG
1 ATTTTTCAAAAAAAAACCTAA
*
16623380 ATTTTT-AAAAAAAAACTTAA
1 ATTTTTCAAAAAAAAACCTAA
16623400 ATTT
1 ATTT
16623404 CCCTAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.36
Consensus pattern (21 bp):
ATTTTTCAAAAAAAAACCTAA
Found at i:16623866 original size:3 final size:3
Alignment explanation
Indices: 16623860--16623899 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
16623850 AAAAATAAAA
* * *
16623860 AAT AAT AAT AAT AAC AAC AAT AAC AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
16623900 TGATATAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:16623899 original size:18 final size:18
Alignment explanation
Indices: 16623860--16623928 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
16623850 AAAAATAAAA
*
16623860 AATAATAATAATAACAAC
1 AATAATAATAATAATAAC
* *
16623878 AATAACAATAATAATAAT
1 AATAATAATAATAATAAC
* *
16623896 AAT-ATGAT-ATAATACC
1 AATAATAATAATAATAAC
*
16623912 ATATAAT-ATACTAATAA
1 A-ATAATAATAATAATAA
16623929 TGATAATGAT
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
16 7 0.18
17 7 0.18
18 25 0.64
ACGTcount: A:0.61, C:0.09, G:0.01, T:0.29
Consensus pattern (18 bp):
AATAATAATAATAATAAC
Found at i:16623940 original size:18 final size:17
Alignment explanation
Indices: 16623889--16623942 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 17
16623879 ATAACAATAA
16623889 TAATAATA-ATATGATA-
1 TAATAATATA-ATGATAC
16623905 TAATACCATATAAT-ATAC
1 TAATA--ATATAATGATAC
16623923 TAATAATGATAATGATAC
1 TAATAAT-ATAATGATAC
16623941 TA
1 TA
16623943 TGGTATAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
16 7 0.22
17 8 0.25
18 16 0.50
19 1 0.03
ACGTcount: A:0.52, C:0.07, G:0.06, T:0.35
Consensus pattern (17 bp):
TAATAATATAATGATAC
Found at i:16637954 original size:13 final size:13
Alignment explanation
Indices: 16637932--16637970 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
16637922 GAACTTGAGA
16637932 AAAAATGAAAAAAC
1 AAAAA-GAAAAAAC
*
16637946 AAAAAGAAAAACC
1 AAAAAGAAAAAAC
16637959 AAAAAGAAAAAA
1 AAAAAGAAAAAA
16637971 AAAGAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 18 0.78
14 5 0.22
ACGTcount: A:0.82, C:0.08, G:0.08, T:0.03
Consensus pattern (13 bp):
AAAAAGAAAAAAC
Found at i:16637987 original size:13 final size:12
Alignment explanation
Indices: 16637940--16637987 Score: 64
Period size: 12 Copynumber: 4.0 Consensus size: 12
16637930 GAAAAAATGA
16637940 AAAAACAAAAAG
1 AAAAACAAAAAG
16637952 AAAAACCAAAAAG
1 AAAAA-CAAAAAG
16637965 -AAAA-AAAAAG
1 AAAAACAAAAAG
16637975 AAAAACAATAAAG
1 AAAAACAA-AAAG
16637988 TGGTAAAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
10 6 0.19
11 4 0.12
12 11 0.34
13 11 0.34
ACGTcount: A:0.81, C:0.08, G:0.08, T:0.02
Consensus pattern (12 bp):
AAAAACAAAAAG
Found at i:16639172 original size:143 final size:143
Alignment explanation
Indices: 16639025--16639345 Score: 321
Period size: 143 Copynumber: 2.3 Consensus size: 143
16639015 TTAGTGAAAT
* * * *
16639025 GCTCTAGATCGTGGTTTT-ATATTAT-TTCATGATTTTAGGCACATTAAAAATTATGACT-GCAC
1 GCTCTAGATCAT-ATTTTCATATTATGTT-ATGATTTTAGGCACATTAAAAACT-TGA-TAACAC
* * * * * * **
16639087 CT-AGAAAGGTGTGAAATTATTGAAATATCCCT-AGGGATATTTTCATAATTTGACATTCTTGAG
62 CTCA-AAAGGTATAAAATTACTAAAATAGCCCTAAGGGATAATTTCATAATTTGACATTCTCAAG
* *
16639150 GTTGATTTTTTACAAAAC
126 GTTGAGTTTTCACAAAAC
* * * *
16639168 GCTCTAGATCATATTTTCATATTATGTTATGATTTTTGGGATATTAAAACCTTGATAACACCTCA
1 GCTCTAGATCATATTTTCATATTATGTTATGATTTTAGGCACATTAAAAACTTGATAACACCTCA
* *
16639233 AAAGGTATAAAATTACTAAAATGGCCCTAAGGGATAATTTCATAATTTGACCTTCTCAAGGTTGA
66 AAAGGTATAAAATTACTAAAATAGCCCTAAGGGATAATTTCATAATTTGACATTCTCAAGGTTGA
*
16639298 GTTTTCACAAAAA
131 GTTTTCACAAAAC
** * * *
16639311 TTTTTAGATCATATTTT-ATATTATTTTAAGATTTT
1 GCTCTAGATCATATTTTCATATTATGTTATGATTTT
16639346 TGGTGCTTTA
Statistics
Matches: 147, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
141 1 0.01
142 50 0.34
143 94 0.64
144 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (143 bp):
GCTCTAGATCATATTTTCATATTATGTTATGATTTTAGGCACATTAAAAACTTGATAACACCTCA
AAAGGTATAAAATTACTAAAATAGCCCTAAGGGATAATTTCATAATTTGACATTCTCAAGGTTGA
GTTTTCACAAAAC
Found at i:16640740 original size:6 final size:6
Alignment explanation
Indices: 16640729--16640806 Score: 79
Period size: 6 Copynumber: 12.5 Consensus size: 6
16640719 CCCAAACCAC
16640729 AAACCT AAACCT AAACCT AAACCT -AACCAT AAACCT AAACCCT AAACCTT
1 AAACCT AAACCT AAACCT AAACCT AAACC-T AAACCT AAA-CCT AAACC-T
* *
16640779 AAATC- AAAGCT CAAACTCT AAACCT AAA
1 AAACCT AAACCT -AAAC-CT AAACCT AAA
16640807 ACTGTAAAAC
Statistics
Matches: 62, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
5 8 0.13
6 30 0.48
7 22 0.35
8 2 0.03
ACGTcount: A:0.50, C:0.31, G:0.01, T:0.18
Consensus pattern (6 bp):
AAACCT
Found at i:16640774 original size:13 final size:13
Alignment explanation
Indices: 16640732--16640940 Score: 84
Period size: 13 Copynumber: 16.5 Consensus size: 13
16640722 AAACCACAAA
16640732 CCTAAACCTAAA-
1 CCTAAACCTAAAC
16640744 CCTAAACCT-AAC
1 CCTAAACCTAAAC
*
16640756 CATAAACCTAAAC
1 CCTAAACCTAAAC
16640769 CCTAAACCTTAAA-
1 CCTAAACC-TAAAC
* *
16640782 TC-AAAGCTCAAAC
1 CCTAAACCT-AAAC
*
16640795 TCTAAACCTAAA-
1 CCTAAACCTAAAC
* **
16640807 ACTGTA---AAAC
1 CCTAAACCTAAAC
*
16640817 CTTAAAACC-AAAC
1 CCT-AAACCTAAAC
* *
16640830 CCCAAACCCTAATC
1 CCTAAA-CCTAAAC
*
16640844 CC-AAACCTTAAAT
1 CCTAAACC-TAAAC
16640857 CC-AAACCCTAAAC
1 CCTAAA-CCTAAAC
* *
16640870 CCTAATCCCAAAC
1 CCTAAACCTAAAC
* *
16640883 CTTAAATCC-ACAC
1 CCTAAA-CCTAAAC
* *
16640896 CCTAGACTTAAAC
1 CCTAAACCTAAAC
*
16640909 CCTAAAACCAAAAC
1 CCT-AAACCTAAAC
*
16640923 CCT-AACCTAGAC
1 CCTAAACCTAAAC
16640935 CCTAAA
1 CCTAAA
16640941 TTAACCTTAA
Statistics
Matches: 146, Mismatches: 32, Indels: 37
0.68 0.15 0.17
Matches are distributed among these distances:
9 3 0.02
10 1 0.01
11 4 0.03
12 43 0.29
13 65 0.45
14 30 0.21
ACGTcount: A:0.45, C:0.35, G:0.02, T:0.17
Consensus pattern (13 bp):
CCTAAACCTAAAC
Found at i:16640898 original size:33 final size:33
Alignment explanation
Indices: 16640813--16640899 Score: 147
Period size: 33 Copynumber: 2.6 Consensus size: 33
16640803 TAAAACTGTA
* *
16640813 AAACCTTAAAACCAAACCCCAAACCCTAATCCC
1 AAACCTTAAATCCAAACCCTAAACCCTAATCCC
16640846 AAACCTTAAATCCAAACCCTAAACCCTAATCCC
1 AAACCTTAAATCCAAACCCTAAACCCTAATCCC
*
16640879 AAACCTTAAATCCACACCCTA
1 AAACCTTAAATCCAAACCCTA
16640900 GACTTAAACC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.44, C:0.40, G:0.00, T:0.16
Consensus pattern (33 bp):
AAACCTTAAATCCAAACCCTAAACCCTAATCCC
Found at i:16648002 original size:3 final size:3
Alignment explanation
Indices: 16647994--16648022 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
16647984 ATAAACTTTA
16647994 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
16648023 GGATAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:16648075 original size:23 final size:23
Alignment explanation
Indices: 16648032--16648077 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
16648022 AGGATAAATG
*
16648032 TAAATAAAAAATAAATCATAAAA
1 TAAATAAAAAATAAATAATAAAA
16648055 TAAATAAATAAATAAA-AATAAAA
1 TAAATAAA-AAATAAATAATAAAA
16648078 AACTATTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (23 bp):
TAAATAAAAAATAAATAATAAAA
Found at i:16652501 original size:13 final size:13
Alignment explanation
Indices: 16652446--16652492 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
16652436 AAAAAATCAA
*
16652446 AAACAAAAACATAC
1 AAAC-AAAACAAAC
*
16652460 AAAC-AAACAAATA
1 AAACAAAACAAA-C
16652473 AAACAAAACAAAC
1 AAACAAAACAAAC
16652486 AAACAAA
1 AAACAAA
16652493 GCAAGCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 6 0.21
13 11 0.39
14 11 0.39
ACGTcount: A:0.77, C:0.19, G:0.00, T:0.04
Consensus pattern (13 bp):
AAACAAAACAAAC
Found at i:16652501 original size:22 final size:22
Alignment explanation
Indices: 16652458--16652502 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
16652448 ACAAAAACAT
*
16652458 ACAAACAAACAAATAAAACAAA
1 ACAAACAAACAAAGAAAACAAA
* *
16652480 ACAAACAAACAAAGCAAGCAAA
1 ACAAACAAACAAAGAAAACAAA
16652502 A
1 A
16652503 ACTTTTCACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.73, C:0.20, G:0.04, T:0.02
Consensus pattern (22 bp):
ACAAACAAACAAAGAAAACAAA
Found at i:16654831 original size:25 final size:23
Alignment explanation
Indices: 16654803--16654856 Score: 54
Period size: 25 Copynumber: 2.2 Consensus size: 23
16654793 TGCAAACCCC
16654803 AAACTAAAACCCTAAAACTAAACAT
1 AAACT-AAACCCTAAAACTAAAC-T
* * *
16654828 AAACCTTAATCCTAAACCTAAACT
1 AAA-CTAAACCCTAAAACTAAACT
16654852 AAACT
1 AAACT
16654857 TTAACCCAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 2 0.08
24 4 0.16
25 17 0.68
26 2 0.08
ACGTcount: A:0.54, C:0.26, G:0.00, T:0.20
Consensus pattern (23 bp):
AAACTAAACCCTAAAACTAAACT
Found at i:16654853 original size:30 final size:30
Alignment explanation
Indices: 16654817--16654876 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
16654807 TAAAACCCTA
**
16654817 AAACTAAACATAAACCTTAATCCTAAACCT
1 AAACTAAACATAAACCCAAATCCTAAACCT
* *
16654847 AAACTAAACTTTAACCCAAATCCTAAACCT
1 AAACTAAACATAAACCCAAATCCTAAACCT
16654877 TAAGCCAAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.23
Consensus pattern (30 bp):
AAACTAAACATAAACCCAAATCCTAAACCT
Found at i:16654854 original size:24 final size:24
Alignment explanation
Indices: 16654813--16654874 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
16654803 AAACTAAAAC
*
16654813 CCTAAAACTAAACATAAACCTTAA
1 CCTAAACCTAAACATAAACCTTAA
*
16654837 TCCTAAACCTAAAC-TAAACTTTAA
1 -CCTAAACCTAAACATAAACCTTAA
*
16654861 CCCAAATCCTAAAC
1 CCTAAA-CCTAAAC
16654875 CTTAAGCCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 5 0.15
24 16 0.48
25 12 0.36
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.23
Consensus pattern (24 bp):
CCTAAACCTAAACATAAACCTTAA
Found at i:16654899 original size:20 final size:21
Alignment explanation
Indices: 16654871--16654913 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
16654861 CCCAAATCCT
*
16654871 AAACCTT-AAGCCAAACCCCA
1 AAACCTTAAAACCAAACCCCA
* *
16654891 AAACGTTAAAACCAAACCTCA
1 AAACCTTAAAACCAAACCCCA
16654912 AA
1 AA
16654914 TCCAAACCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.51, C:0.33, G:0.05, T:0.12
Consensus pattern (21 bp):
AAACCTTAAAACCAAACCCCA
Found at i:16654927 original size:7 final size:7
Alignment explanation
Indices: 16654917--16654995 Score: 55
Period size: 7 Copynumber: 12.3 Consensus size: 7
16654907 CCTCAAATCC
16654917 AAACCCT
1 AAACCCT
16654924 AAA-CCT
1 AAACCCT
16654930 AAA-CCT
1 AAACCCT
16654936 AAA-CC-
1 AAACCCT
*
16654941 -AATCCT
1 AAACCCT
16654947 AAACCCT
1 AAACCCT
*
16654954 AAATCC-
1 AAACCCT
*
16654960 AAATCCT
1 AAACCCT
*
16654967 -AACCTT
1 AAACCCT
16654973 AAACCCT
1 AAACCCT
* *
16654980 AAAACCA
1 AAACCCT
16654987 AAACCCT
1 AAACCCT
16654994 AA
1 AA
16654996 CTTAGACCCT
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
4 2 0.03
5 2 0.03
6 24 0.41
7 30 0.52
ACGTcount: A:0.48, C:0.35, G:0.00, T:0.16
Consensus pattern (7 bp):
AAACCCT
Found at i:16654930 original size:6 final size:6
Alignment explanation
Indices: 16654899--16654982 Score: 52
Period size: 6 Copynumber: 13.5 Consensus size: 6
16654889 CAAAACGTTA
*
16654899 AAACC- AAACCT CAAATCC- AAACCCT AAACCT AAACCT AAACC- AATCCT
1 AAACCT AAACCT -AAA-CCT AAA-CCT AAACCT AAACCT AAACCT AAACCT
16654947 AAACCCT AAATCC- AAATCCT -AACCTT AAACCCT AAA
1 AAA-CCT AAA-CCT AAA-CCT AAACC-T AAA-CCT AAA
16654983 ACCAAAACCC
Statistics
Matches: 65, Mismatches: 4, Indels: 18
0.75 0.05 0.21
Matches are distributed among these distances:
5 11 0.17
6 30 0.46
7 20 0.31
8 4 0.06
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.17
Consensus pattern (6 bp):
AAACCT
Found at i:16654933 original size:13 final size:13
Alignment explanation
Indices: 16654921--16654995 Score: 61
Period size: 13 Copynumber: 5.9 Consensus size: 13
16654911 AAATCCAAAC
16654921 CCTAAA-CCTAAA
1 CCTAAACCCTAAA
*
16654933 CCTAAA-CC-AAT
1 CCTAAACCCTAAA
16654944 CCTAAACCCTAAA
1 CCTAAACCCTAAA
*
16654957 TCC-AAATCCT-AA
1 -CCTAAACCCTAAA
16654969 CCTTAAACCCTAAAA
1 CC-TAAACCCT-AAA
*
16654984 CCAAAACCCTAA
1 CCTAAACCCTAA
16654996 CTTAGACCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
11 10 0.20
12 12 0.24
13 16 0.31
14 9 0.18
15 4 0.08
ACGTcount: A:0.47, C:0.36, G:0.00, T:0.17
Consensus pattern (13 bp):
CCTAAACCCTAAA
Found at i:16654949 original size:11 final size:12
Alignment explanation
Indices: 16654813--16654982 Score: 66
Period size: 13 Copynumber: 13.5 Consensus size: 12
16654803 AAACTAAAAC
*
16654813 CCTAAAACTAAA
1 CCTAAACCTAAA
* *
16654825 CATAAACCTTAAT
1 CCTAAACC-TAAA
16654838 CCTAAACCTAAA
1 CCTAAACCTAAA
* *
16654850 -CTAAACTTTAA
1 CCTAAACCTAAA
*
16654861 CCCAAATCCTAAA
1 CCTAAA-CCTAAA
*
16654874 CCTTAAGCC-AAA
1 CC-TAAACCTAAA
* *
16654886 CCCCAAAACGTTAAAA
1 --CCTAAAC-CT-AAA
16654902 CC-AAACCTCAAA
1 CCTAAACCT-AAA
16654914 TCC-AAACCCTAAA
1 -CCTAAA-CCTAAA
16654927 CCTAAACCTAAA
1 CCTAAACCTAAA
*
16654939 CC-AATCCTAAA
1 CCTAAACCTAAA
16654950 CCCTAAATCC-AAA
1 -CCTAAA-CCTAAA
16654963 TCCT-AACCTTAAA
1 -CCTAAACC-TAAA
16654976 CCCTAAA
1 -CCTAAA
16654983 ACCAAAACCC
Statistics
Matches: 119, Mismatches: 21, Indels: 34
0.68 0.12 0.20
Matches are distributed among these distances:
11 19 0.16
12 34 0.29
13 50 0.42
14 13 0.11
16 3 0.03
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (12 bp):
CCTAAACCTAAA
Found at i:16654987 original size:26 final size:27
Alignment explanation
Indices: 16654946--16655005 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
16654936 AAACCAATCC
*
16654946 TAAACCCTAAATCC-AAATCCTAACCT
1 TAAACCCTAAAACCAAAATCCTAACCT
*
16654972 TAAACCCTAAAACCAAAACCCTAA-CT
1 TAAACCCTAAAACCAAAATCCTAACCT
*
16654998 TAGACCCT
1 TAAACCCT
16655006 TAATTACCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 22 0.73
27 8 0.27
ACGTcount: A:0.43, C:0.35, G:0.02, T:0.20
Consensus pattern (27 bp):
TAAACCCTAAAACCAAAATCCTAACCT
Found at i:16658678 original size:15 final size:15
Alignment explanation
Indices: 16658660--16658691 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
16658650 ATTAGTGAAA
16658660 AATAATATTTTTCAG
1 AATAATATTTTTCAG
16658675 AATAATATTTTTCAG
1 AATAATATTTTTCAG
16658690 AA
1 AA
16658692 GAGTTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (15 bp):
AATAATATTTTTCAG
Found at i:16665117 original size:62 final size:59
Alignment explanation
Indices: 16665038--16665314 Score: 150
Period size: 62 Copynumber: 4.5 Consensus size: 59
16665028 AAAATTATTA
* * *
16665038 AAGGCATTTGTT-GAAAATAAATGCCTTCAATAATTATGTACATAAATTAAAAGGAATTAGTG
1 AAGGCATTT-TTCTAAAATAAATACCTTCAATAATTAT-TA-A-AAATTAAAAAGAATTAGTG
* * * * ** * *
16665100 AAGGCATTTTTCTAAAATAAACACCTTCACTAACCGTT-TTAAAATTTGAGTAGTGAAATATTG
1 AAGGCATTTTTCTAAAATAAATACCTTCAATAA---TTATTAAAAATT-A-AAAAGAATTAGTG
* ** * * * * * * *
16665163 AAGGCGTTTTTC-ATTAGAAATGCTTTTAATAA-TCTTAAAAATTTTTAAAGAAAAATTATTG
1 AAGGCATTTTTCTAAAATAAATACCTTCAATAATTATTAAAAA---TTAAA-AAGAATTAGTG
*
16665224 AAGGCATTTGTTCTAAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAAGAATTAGT-
1 AAGGCATTT-TTCTAAAATAAATACCTTCAATAATTAT-T--AAAAATTAAAAAGAATTAGTG
* *
16665286 AAGGCATTTTTCTAGAATAAACACCTTCA
1 AAGGCATTTTTCTAAAATAAATACCTTCA
16665315 CTAACCATTT
Statistics
Matches: 160, Mismatches: 38, Indels: 35
0.69 0.16 0.15
Matches are distributed among these distances:
58 1 0.01
59 6 0.04
60 1 0.01
61 39 0.24
62 54 0.34
63 43 0.27
64 8 0.05
65 3 0.02
67 5 0.03
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (59 bp):
AAGGCATTTTTCTAAAATAAATACCTTCAATAATTATTAAAAATTAAAAAGAATTAGTG
Found at i:16665668 original size:371 final size:373
Alignment explanation
Indices: 16664971--16665808 Score: 1063
Period size: 371 Copynumber: 2.3 Consensus size: 373
16664961 TCCTTAAAAT
*
16664971 TATTAAAGGCAT-TTTATACTA-AAAGACGCCTTTAATAATCCCAAAAATTTTTAAAATAAAATT
1 TATTAAAGGCATATTT-CACTAGAAA-ACGCCTTTAATAATCCCAAAAATTTTTAAAATAAAATT
* * *
16665034 ATTAAAGGCATTTGTTGAAAATAAATGCCTTCAATAATTATGTACATAAATTAAAAGGAATTAGT
64 ATTAAAGGCATTTGTTGAAAATAAAGGCCTTCAATAATTATATACAAAAATTAAAAGGAATTAGT
* * *
16665099 GAAGGCATTTTTCTAAAATAAACACCTTCACTAACCGTTTTAAAATTTGAGTAGTGAAATATTGA
129 GAAGGCATTTTTCTAAAATAAACACCTTCACTAACCATCTTAAAATTTGAGTACTGAAATATTGA
* * *
16665164 AGGCGTTTTTCATTAGAAATGCTTTTAATAATCTTAAAAATTTTTAAAGAAAAATTATTGAAGGC
194 AGGCGTTTTTCATTAGAAATGCTTTTAATAATCCTAAAAATTTTAAAAGAAAAATTATTAAAGGC
*
16665229 ATTTGTTCTAAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAAGAATTAGTAAGGCATT
259 ATTTGTTCTAAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAAGAACTAGTAAGGCATT
* * * *
16665294 TTTCTAGAATAAACACCTTCACTAACCATTTTAAAATTTGAGTATTGGAA
324 TTTCTAGAATAAACACCTCCACTAACCATCTTAAAATTTGAGTAGTGAAA
* * * * *
16665344 TATTGAAGGCATATTTCACTAGAACACGCCTTTAATAATCTCAAAAATTTTT-TAA-AAATTTAT
1 TATTAAAGGCATATTTCACTAGAAAACGCCTTTAATAATCCCAAAAATTTTTAAAATAAAATTAT
* * ** *
16665407 TGAAGGCGTTTGTT-CTAA-AAAGGCACATTCAATAATTATATACAAAAATTAAAAGGAATTATT
66 TAAAGGCATTTGTTGAAAATAAAGGC-C-TTCAATAATTATATACAAAAATTAAAAGGAATTAGT
** ** **
16665470 GAAGGCATTTTTCTGGAATAAATGCCTTCACTAACCATCTTAAAATTTGAGTACTGGTATATTGA
129 GAAGGCATTTTTCTAAAATAAACACCTTCACTAACCATCTTAAAATTTGAGTACTGAAATATTGA
*
16665535 AGGCGTTTTTCACTATAAGACAT-C-TTTAATAATCCTAAAAATTTTAAAAG-AAAATTATTAAA
194 AGGCGTTTTTCA-T-T-AGAAATGCTTTTAATAATCCTAAAAATTTTAAAAGAAAAATTATTAAA
* *
16665597 GGTATTTGTTCT-AAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAGGAACTAGTGAAGG
256 GGCATTTGTTCTAAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAAGAACTAGT-AAGG
* ** *
16665661 TATTTTTCTAGAATAAATGCCTCCACTAACCGTCTTAAAATTTGAGTAGTGAAA
320 CATTTTTCTAGAATAAACACCTCCACTAACCATCTTAAAATTTGAGTAGTGAAA
* * * * * * *
16665715 TATTAAAGGCATTTTTCATTAGAAAATGCCTTTAAT-TTCCCAAAAA-ATTTAAAAAAAAATTGT
1 TATTAAAGGCATATTTCACTAGAAAACGCCTTTAATAATCCCAAAAATTTTTAAAATAAAATTAT
* * * *
16665778 TGAAGGCGTTTTTCTG-AAATAAACGCCTTCA
66 TAAAGGCATTTGT-TGAAAATAAAGGCCTTCA
16665809 CTAACCATCT
Statistics
Matches: 400, Mismatches: 52, Indels: 28
0.83 0.11 0.06
Matches are distributed among these distances:
369 8 0.02
370 58 0.14
371 245 0.61
372 31 0.08
373 48 0.12
374 10 0.03
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (373 bp):
TATTAAAGGCATATTTCACTAGAAAACGCCTTTAATAATCCCAAAAATTTTTAAAATAAAATTAT
TAAAGGCATTTGTTGAAAATAAAGGCCTTCAATAATTATATACAAAAATTAAAAGGAATTAGTGA
AGGCATTTTTCTAAAATAAACACCTTCACTAACCATCTTAAAATTTGAGTACTGAAATATTGAAG
GCGTTTTTCATTAGAAATGCTTTTAATAATCCTAAAAATTTTAAAAGAAAAATTATTAAAGGCAT
TTGTTCTAAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAAGAACTAGTAAGGCATTTT
TCTAGAATAAACACCTCCACTAACCATCTTAAAATTTGAGTAGTGAAA
Found at i:16665850 original size:186 final size:186
Alignment explanation
Indices: 16664971--16665792 Score: 953
Period size: 186 Copynumber: 4.4 Consensus size: 186
16664961 TCCTTAAAAT
* * * *
16664971 TATTAAAGGCATTTTAT-ACTA-AAAGACGCCTTTAATAATCCCAAAAATTTTTAAAATAAAATT
1 TATTGAAGGCATTTT-TCACTAGAAA-ATGCCTTTAATAATCCCAAAAA-ATTTAAAAAAAAATT
* * * *
16665034 ATTAAAGGCATTTGTT-GAAAATAAATGCCTTCAATAATTATGTACATAAATTAAAAGGAATTAG
63 ATTGAAGGCATTTGTTCTAAAA-AAATACCTTCAATAATTATGTACAAAAATTAAAAGGAATTAG
* * *
16665098 TGAAGGCATTTTTCTAAAATAAACACCTTCACTAACCGTTTTAAAATTTGAGTAGTGAAA
127 TGAAGGCATTTTTCTAGAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAA
* * * ** * *
16665158 TATTGAAGGCGTTTTTCATTAG-AAATGCTTTTAATAATCTTAAAAATTTTTAAAGAAAAATTAT
1 TATTGAAGGCATTTTTCACTAGAAAATGCCTTTAATAATCCCAAAAA-ATTTAAAAAAAAATTAT
*
16665222 TGAAGGCATTTGTTCTAAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAAGAATTAGT-
65 TGAAGGCATTTGTTCT-AAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAGGAATTAGTG
* * *
16665286 AAGGCATTTTTCTAGAATAAACACCTTCACTAACCATTTTAAAATTTGAGTATTGGAA
129 AAGGCATTTTTCTAGAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAA
* * * * *** *
16665344 TATTGAAGGCATATTTCACTAGAACACGCCTTTAATAATCTC-AAAAATTTTTTAAAAATTTATT
1 TATTGAAGGCATTTTTCACTAGAAAATGCCTTTAATAATCCCAAAAAATTTAAAAAAAAATTATT
* *** * * *
16665408 GAAGGCGTTTGTTCTAAAAAGGCACATTCAATAATTATATACAAAAATTAAAAGGAATTATTGAA
66 GAAGGCATTTGTTCTAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAGGAATTAGTGAA
* ** * **
16665473 GGCATTTTTCTGGAATAAATGCCTTCACTAACCATCTTAAAATTTGAGTACTGGTA
131 GGCATTTTTCTAGAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAA
* * * * *
16665529 TATTGAAGGCGTTTTTCACTATAAGACAT--CTTTAATAATCCTAAAAATTTTAAAAGAAAATTA
1 TATTGAAGGCATTTTTCACTAGAA-A-ATGCCTTTAATAATCCCAAAAAATTTAAAAAAAAATTA
* * *
16665592 TTAAAGGTATTTGTTCTAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAGGAACTAGTG
64 TTGAAGGCATTTGTTCTAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAGGAATTAGTG
* ** * *
16665657 AAGGTATTTTTCTAGAATAAATGCCTCCACTAACCGTCTTAAAATTTGAGTAGTGAAA
129 AAGGCATTTTTCTAGAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAA
* * * *
16665715 TATTAAAGGCATTTTTCATTAGAAAATGCCTTTAAT-TTCCCAAAAAATTTAAAAAAAAATTGTT
1 TATTGAAGGCATTTTTCACTAGAAAATGCCTTTAATAATCCCAAAAAATTTAAAAAAAAATTATT
*
16665779 GAAGGCGTTT-TTCT
66 GAAGGCATTTGTTCT
16665793 GAAATAAACG
Statistics
Matches: 537, Mismatches: 87, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
184 46 0.09
185 141 0.26
186 272 0.51
187 74 0.14
188 4 0.01
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (186 bp):
TATTGAAGGCATTTTTCACTAGAAAATGCCTTTAATAATCCCAAAAAATTTAAAAAAAAATTATT
GAAGGCATTTGTTCTAAAAAAATACCTTCAATAATTATGTACAAAAATTAAAAGGAATTAGTGAA
GGCATTTTTCTAGAATAAACACCTTCACTAACCATCTTAAAATTTGAGTAGTGAAA
Found at i:16691047 original size:50 final size:49
Alignment explanation
Indices: 16690951--16691062 Score: 136
Period size: 50 Copynumber: 2.2 Consensus size: 49
16690941 AAGCTTCCTG
* *
16690951 AGAAAAGTTATT-ATTTTTAATTTATTTTTTAAAATTATAAAACTTTAATG
1 AGAAAAGTT-TTCA-TTTCAATTTATTTTTTAAAATTATAAAACTTTAATA
* * * *
16691001 AGAAAATTTTTCATTTCAATTTATTTTTTAAAGTTATGAAACCTTTAGTA
1 AGAAAAGTTTTCATTTCAATTTATTTTTTAAAATTAT-AAAACTTTAATA
16691051 AGAAAAGTTTTC
1 AGAAAAGTTTTC
16691063 GAGTCAATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
49 24 0.45
50 29 0.55
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.47
Consensus pattern (49 bp):
AGAAAAGTTTTCATTTCAATTTATTTTTTAAAATTATAAAACTTTAATA
Found at i:16697394 original size:39 final size:40
Alignment explanation
Indices: 16697317--16697418 Score: 125
Period size: 39 Copynumber: 2.6 Consensus size: 40
16697307 TTTTCCAATT
16697317 CTACCAAACTATTAGAGGATTTAAATCCCAAAGCTAAATC
1 CTACCAAACTATTAGAGGATTTAAATCCCAAAGCTAAATC
* * ** * *
16697357 CTACCACACTATTGGAGGA-TTAAATTTCAAGGTTAAATC
1 CTACCAAACTATTAGAGGATTTAAATCCCAAAGCTAAATC
* *
16697396 TTACCAAACTATTAGAAGATTTA
1 CTACCAAACTATTAGAGGATTTA
16697419 TTATTATTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
39 31 0.61
40 20 0.39
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (40 bp):
CTACCAAACTATTAGAGGATTTAAATCCCAAAGCTAAATC
Found at i:16699704 original size:3 final size:3
Alignment explanation
Indices: 16699698--16699724 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
16699688 AAGTTTTTTA
16699698 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
16699725 TATTTTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:16700836 original size:40 final size:40
Alignment explanation
Indices: 16700791--16700867 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
16700781 TTCTAATCTT
* *
16700791 ACTAAACTATTGGAGGATTT-AAGTCTCAAAATTAAATCCC
1 ACTAAACTATCGAAGGATTTCAA-TCTCAAAATTAAATCCC
* *
16700831 ACTAAATTATCGAAGGATTTCAATCTCAAAGTTAAAT
1 ACTAAACTATCGAAGGATTTCAATCTCAAAATTAAAT
16700868 TTTATTAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 30 0.94
41 2 0.06
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.31
Consensus pattern (40 bp):
ACTAAACTATCGAAGGATTTCAATCTCAAAATTAAATCCC
Found at i:16705531 original size:19 final size:18
Alignment explanation
Indices: 16705507--16705542 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
16705497 CAATCCTTTC
16705507 TTTTTCTCTTTTGCTTTTT
1 TTTTTCT-TTTTGCTTTTT
*
16705526 TTTTTCTTTTTTCTTTT
1 TTTTTCTTTTTGCTTTT
16705543 CGACTATGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (18 bp):
TTTTTCTTTTTGCTTTTT
Found at i:16705533 original size:17 final size:18
Alignment explanation
Indices: 16705502--16705535 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
16705492 TCATTCAATC
16705502 CTTTCTTTTTCTCTTTTG
1 CTTTCTTTTTCTCTTTTG
*
16705520 CTTT-TTTTTTTCTTTT
1 CTTTCTTTTTCTCTTTT
16705536 TTCTTTTCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (18 bp):
CTTTCTTTTTCTCTTTTG
Found at i:16705855 original size:20 final size:20
Alignment explanation
Indices: 16705814--16705861 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
16705804 TTTTCCTCTG
*
16705814 TTCTTTTCTTTTTATTTCTT
1 TTCTTTCCTTTTTATTTCTT
*
16705834 TTCTTTCCTTTTTCTTT-TT
1 TTCTTTCCTTTTTATTTCTT
16705853 TT-TTTCCTT
1 TTCTTTCCTT
16705862 CATTTTCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 7 0.27
19 4 0.15
20 15 0.58
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (20 bp):
TTCTTTCCTTTTTATTTCTT
Found at i:16705868 original size:32 final size:32
Alignment explanation
Indices: 16705805--16705868 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 32
16705795 TTATTTCATT
*
16705805 TTTCCTCTGTTCTTTTCTTTTTATTTCTTTTC
1 TTTCCTCTGTTCTTTTCTTTTTACTTCTTTTC
* * *
16705837 TTTCCT-TTTTCTTTTTTTTTTCCTTCATTTTC
1 TTTCCTCTGTTCTTTTCTTTTTACTTC-TTTTC
16705869 CATTTCTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.03, C:0.22, G:0.02, T:0.73
Consensus pattern (32 bp):
TTTCCTCTGTTCTTTTCTTTTTACTTCTTTTC
Found at i:16707166 original size:12 final size:12
Alignment explanation
Indices: 16707151--16707193 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
16707141 GCAAAAATGA
*
16707151 ATGCATGTATGT
1 ATGCATGCATGT
*
16707163 ATGCATGCATGA
1 ATGCATGCATGT
**
16707175 ATAAATGCATGT
1 ATGCATGCATGT
16707187 ATGCATG
1 ATGCATG
16707194 AATGCATGAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (12 bp):
ATGCATGCATGT
Found at i:16707172 original size:16 final size:16
Alignment explanation
Indices: 16707146--16707207 Score: 61
Period size: 16 Copynumber: 3.9 Consensus size: 16
16707136 ATAATGCAAA
* *
16707146 AATGAATGCATGTATG
1 AATGCATGCATGAATG
* *
16707162 TATGCATGCATGAATA
1 AATGCATGCATGAATG
* *
16707178 AATGCATGTATGCATG
1 AATGCATGCATGAATG
*
16707194 AATGCATGAATGAA
1 AATGCATGCATGAA
16707208 ATAAGAAAGA
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.29
Consensus pattern (16 bp):
AATGCATGCATGAATG
Found at i:16707192 original size:8 final size:8
Alignment explanation
Indices: 16707147--16707205 Score: 54
Period size: 8 Copynumber: 7.9 Consensus size: 8
16707137 TAATGCAAAA
16707147 ATGAATGC
1 ATGAATGC
* *
16707155 ATGTATGT
1 ATGAATGC
*
16707163 ATGCATGC
1 ATGAATGC
16707171 ATGAAT--
1 ATGAATGC
16707177 A--AATGC
1 ATGAATGC
*
16707183 ATGTATGC
1 ATGAATGC
16707191 ATGAATGC
1 ATGAATGC
16707199 ATGAATG
1 ATGAATG
16707206 AAATAAGAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
4 3 0.08
6 2 0.05
8 35 0.88
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.31
Consensus pattern (8 bp):
ATGAATGC
Found at i:16708472 original size:12 final size:12
Alignment explanation
Indices: 16708455--16708480 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16708445 ATAATATTAT
16708455 ATCATGCAATAA
1 ATCATGCAATAA
16708467 ATCATGCAATAA
1 ATCATGCAATAA
16708479 AT
1 AT
16708481 AAAATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.15, G:0.08, T:0.27
Consensus pattern (12 bp):
ATCATGCAATAA
Found at i:16708491 original size:34 final size:34
Alignment explanation
Indices: 16708444--16708535 Score: 103
Period size: 34 Copynumber: 2.7 Consensus size: 34
16708434 CATACCATGC
* * *
16708444 AATAATATTATATCATGCAATAAATCATGCAATA
1 AATAAAATCATATCATACAATAAATCATGCAATA
* ** *
16708478 AATAAAATCATATCATCCAATAAATTGTGTAATA
1 AATAAAATCATATCATACAATAAATCATGCAATA
*
16708512 ATATAAAATCATACCATACAATAA
1 A-ATAAAATCATATCATACAATAA
16708536 TATAAAATCA
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
34 29 0.59
35 20 0.41
ACGTcount: A:0.52, C:0.13, G:0.04, T:0.30
Consensus pattern (34 bp):
AATAAAATCATATCATACAATAAATCATGCAATA
Found at i:16708501 original size:18 final size:18
Alignment explanation
Indices: 16708430--16708501 Score: 60
Period size: 18 Copynumber: 4.1 Consensus size: 18
16708420 AATAAATATT
*
16708430 AAATCATACCATGCAATA
1 AAATCATATCATGCAATA
* *
16708448 ATATTATATCATGCAAT-
1 AAATCATATCATGCAATA
* *
16708465 AAATCAT-GCAAT-AAATA
1 AAATCATATC-ATGCAATA
*
16708482 AAATCATATCATCCAATA
1 AAATCATATCATGCAATA
16708500 AA
1 AA
16708502 TTGTGTAATA
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
16 4 0.10
17 16 0.39
18 21 0.51
ACGTcount: A:0.51, C:0.17, G:0.04, T:0.28
Consensus pattern (18 bp):
AAATCATATCATGCAATA
Found at i:16708534 original size:23 final size:23
Alignment explanation
Indices: 16708508--16708555 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
16708498 TAAATTGTGT
16708508 AATAATATAAAATCATACCATAC
1 AATAATATAAAATCATACCATAC
*
16708531 AATAATATAAAATCATATCATAC
1 AATAATATAAAATCATACCATAC
16708554 AA
1 AA
16708556 AAATTATCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (23 bp):
AATAATATAAAATCATACCATAC
Found at i:16708641 original size:18 final size:18
Alignment explanation
Indices: 16708597--16708644 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
16708587 AATATTCGTG
* **
16708597 CAAATATATATAATCATG
1 CAAATAAATATAATCACA
16708615 C-AATCAAATATAATCACA
1 CAAAT-AAATATAATCACA
16708633 CAAATAAATATA
1 CAAATAAATATA
16708645 TTAATAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 3 0.12
18 19 0.76
19 3 0.12
ACGTcount: A:0.56, C:0.15, G:0.02, T:0.27
Consensus pattern (18 bp):
CAAATAAATATAATCACA
Found at i:16708654 original size:24 final size:24
Alignment explanation
Indices: 16708624--16708799 Score: 154
Period size: 24 Copynumber: 7.6 Consensus size: 24
16708614 GCAATCAAAT
*
16708624 ATAATCACACAAATAAATATATTA
1 ATAATCATACAAATAAATATATTA
* * *
16708648 ATAATCATGCAATTAAATATATCA
1 ATAATCATACAAATAAATATATTA
* **
16708672 ATAATCCT-GTAAT-AA-A-A-T-
1 ATAATCATACAAATAAATATATTA
16708690 ATAATCATACAAATAAATATATTA
1 ATAATCATACAAATAAATATATTA
** *
16708714 ATAATCAGGCAATTAAATATATTA
1 ATAATCATACAAATAAATATATTA
* *
16708738 ATAATCATGC-AATCAAAT-TA-AA
1 ATAATCATACAAAT-AAATATATTA
16708760 TATAATCATACAAATAAATATATTA
1 -ATAATCATACAAATAAATATATTA
*
16708785 ATAATCATGCAAATA
1 ATAATCATACAAATA
16708800 TATTAATAAA
Statistics
Matches: 120, Mismatches: 21, Indels: 22
0.74 0.13 0.13
Matches are distributed among these distances:
18 7 0.06
19 3 0.03
20 3 0.03
21 2 0.02
22 4 0.03
23 20 0.17
24 80 0.67
25 1 0.01
ACGTcount: A:0.54, C:0.11, G:0.03, T:0.32
Consensus pattern (24 bp):
ATAATCATACAAATAAATATATTA
Found at i:16708655 original size:42 final size:42
Alignment explanation
Indices: 16708598--16708796 Score: 138
Period size: 47 Copynumber: 4.5 Consensus size: 42
16708588 ATATTCGTGC
16708598 AAATATA-T-ATAATCATGCAATCAAATATAATCACACAAAT
1 AAATATATTAATAATCATGCAATCAAATATAATCACACAAAT
* * *
16708638 AAATATATTAATAATCATGCAATTAAATAT-ATCA-ATAATCCT
1 AAATATATTAATAATCATGCAATCAAATATAATCACACAA--AT
* * * * * * *
16708680 GTAATAAAAT-ATAATCATACAAATAAATATATTAATAATCAGGCAATT
1 -AAATATATTAATAATCATGC-AATCAA-ATA-TAATCA-CA--CAAAT
*
16708728 AAATATATTAATAATCATGCAATCAAATTAAATATAATCATACAAAT
1 AAATATATTAATAATCATGCAATC-----AAATATAATCACACAAAT
16708775 AAATATATTAATAATCATGCAA
1 AAATATATTAATAATCATGCAA
16708797 ATATATTAAT
Statistics
Matches: 121, Mismatches: 19, Indels: 31
0.71 0.11 0.18
Matches are distributed among these distances:
40 10 0.08
41 5 0.04
42 29 0.24
43 11 0.09
44 3 0.02
45 1 0.01
46 3 0.02
47 35 0.29
48 11 0.09
49 1 0.01
50 7 0.06
51 3 0.02
52 2 0.02
ACGTcount: A:0.54, C:0.11, G:0.04, T:0.32
Consensus pattern (42 bp):
AAATATATTAATAATCATGCAATCAAATATAATCACACAAAT
Found at i:16708690 original size:66 final size:65
Alignment explanation
Indices: 16708598--16708831 Score: 278
Period size: 66 Copynumber: 3.5 Consensus size: 65
16708588 ATATTCGTGC
* * *
16708598 AAATATAT-ATAATCATGCAATCAAATATAATCACACAAATAAATATATTAATAATCATGCAATT
1 AAATATATAATAATCATGTAATAAAATATAATCATACAAATAAATATATTAATAATCATGCAATT
* *
16708662 AAATATATCAATAATCCTGTAATAAAATATAATCATACAAATAAATATATTAATAATCAGGCAAT
1 AAATATAT-AATAATCATGTAATAAAATATAATCATACAAATAAATATATTAATAATCATGCAAT
16708727 T
65 T
*
16708728 AAATATATTAATAATCATGCAATCAAATTAAATATAATCATACAAATAAATATATTAATAATCAT
1 AAATATA-TAATAATCATG---T--AATAAAATATAATCATACAAATAAATATATTAATAATCAT
16708793 GCAA--
60 GCAATT
* * * *
16708797 ATATAT-TAATAAATCATGCAATTAAATAAAATCAT
1 AAATATATAAT-AATCATGTAATAAAATATAATCAT
16708832 GAAAGCAAAT
Statistics
Matches: 150, Mismatches: 11, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
63 15 0.10
64 8 0.05
66 67 0.45
67 5 0.03
68 7 0.05
69 6 0.04
71 42 0.28
ACGTcount: A:0.54, C:0.11, G:0.03, T:0.32
Consensus pattern (65 bp):
AAATATATAATAATCATGTAATAAAATATAATCATACAAATAAATATATTAATAATCATGCAATT
Found at i:16708798 original size:20 final size:20
Alignment explanation
Indices: 16708775--16708864 Score: 89
Period size: 20 Copynumber: 4.6 Consensus size: 20
16708765 TCATACAAAT
16708775 AAATATATTAATAATCATGC
1 AAATATATTAATAATCATGC
16708795 AAATATATTAATAAATCATGC
1 AAATATATTAAT-AATCATGC
* *
16708816 AATTA-AATAA-AATCATG-
1 AAATATATTAATAATCATGC
* * *
16708833 AAAGCAAATTAA-ATTCATGC
1 AAA-TATATTAATAATCATGC
16708853 AAATATATTAAT
1 AAATATATTAAT
16708865 CATGCAAATA
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
17 2 0.04
18 8 0.14
19 16 0.28
20 19 0.33
21 12 0.21
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (20 bp):
AAATATATTAATAATCATGC
Found at i:16708824 original size:17 final size:17
Alignment explanation
Indices: 16708804--16708931 Score: 73
Period size: 16 Copynumber: 7.2 Consensus size: 17
16708794 CAAATATATT
*
16708804 AATAAATCATGCAATTA
1 AATAAATCATGCAAATA
*
16708821 AATAAAATCATG-AAAGCA
1 AAT-AAATCATGCAAA-TA
16708839 AATTAAATTCATGCAAATA
1 AA-TAAA-TCATGCAAATA
* *
16708858 TATTAATCATGCAAATA
1 AATAAATCATGCAAATA
* * * *
16708875 AA-ATATTAGGCAGATA
1 AATAAATCATGCAAATA
*
16708891 AAT-TATCATGCAAATA
1 AATAAATCATGCAAATA
*
16708907 TAATATTAATCAAGCAAATA
1 -AATA--AATCATGCAAATA
16708927 TAATA
1 -AATA
16708932 TTAGTAATGC
Statistics
Matches: 85, Mismatches: 16, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
16 21 0.25
17 20 0.24
18 17 0.20
19 8 0.09
20 19 0.22
ACGTcount: A:0.53, C:0.10, G:0.08, T:0.29
Consensus pattern (17 bp):
AATAAATCATGCAAATA
Found at i:16708882 original size:20 final size:20
Alignment explanation
Indices: 16708602--16708945 Score: 71
Period size: 24 Copynumber: 16.9 Consensus size: 20
16708592 TCGTGCAAAT
*
16708602 ATATATAATCATGC-AATCAA
1 ATAT-TAATCATGCAAATAAA
**
16708622 ATA-TAATCACACAAATAAA
1 ATATTAATCATGCAAATAAA
*
16708641 TATATTAATAATCATGCAATTAAA
1 -ATA-T--TAATCATGCAAATAAA
* *
16708665 TATATCAATAATCCTG-TAATAAA
1 -ATAT---TAATCATGCAAATAAA
*
16708688 ATA-TAATCATACAAATAAA
1 ATATTAATCATGCAAATAAA
* *
16708707 TATATTAATAATCAGGCAATTAAA
1 -ATA-T--TAATCATGCAAATAAA
16708731 TATATTAATAATCATGC-AATCAAA
1 -ATA-T--TAATCATGCAAAT-AAA
* *
16708755 TTAAATATAATCATACAAATAAA
1 --ATAT-TAATCATGCAAATAAA
*
16708778 TATATTAATAATCATGCAAATATA
1 -ATA-T--TAATCATGCAAATAAA
* * *
16708802 TTAATAAATCATGC-AATTAA
1 AT-ATTAATCATGCAAATAAA
* **
16708822 ATA-AAATCATG-AAAGCAA
1 ATATTAATCATGCAAATAAA
*
16708840 AT-TAAATTCATGCAAAT---
1 ATATTAA-TCATGCAAATAAA
16708857 ATATTAATCATGCAAATAAA
1 ATATTAATCATGCAAATAAA
* *
16708877 ATA-T--T-AGGCAGAT--A
1 ATATTAATCATGCAAATAAA
*
16708891 A-ATT-ATCATGCAAATATA
1 ATATTAATCATGCAAATAAA
* *
16708909 ATATTAATCAAGCAAATATA
1 ATATTAATCATGCAAATAAA
* *
16708929 ATATTAGTAATGCAAAT
1 ATATTAATCATGCAAAT
16708946 TTATGCAAAA
Statistics
Matches: 251, Mismatches: 39, Indels: 68
0.70 0.11 0.19
Matches are distributed among these distances:
13 1 0.00
14 3 0.01
15 1 0.00
16 12 0.05
17 13 0.05
18 35 0.14
19 21 0.08
20 47 0.19
21 8 0.03
22 6 0.02
23 23 0.09
24 78 0.31
25 3 0.01
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.31
Consensus pattern (20 bp):
ATATTAATCATGCAAATAAA
Found at i:16708946 original size:52 final size:50
Alignment explanation
Indices: 16708853--16708959 Score: 121
Period size: 52 Copynumber: 2.1 Consensus size: 50
16708843 AAATTCATGC
*
16708853 AAAT-ATATTAATCATGCAAATAAAATATTAGGCAGATAAATTATCATGCAA
1 AAATAATATTAATCAAGCAAATAAAATATTAGGCAGATAAATT-T-ATGCAA
* * *
16708904 ATATAATATTAATCAAGCAAATATAATATTA-GTA-ATGCAAATTTATGCAA
1 AAATAATATTAATCAAGCAAATAAAATATTAGGCAGAT--AAATTTATGCAA
16708954 AAATAA
1 AAATAA
16708960 ATACTAAGTA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
50 13 0.27
51 6 0.12
52 29 0.60
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.31
Consensus pattern (50 bp):
AAATAATATTAATCAAGCAAATAAAATATTAGGCAGATAAATTTATGCAA
Found at i:16710140 original size:13 final size:14
Alignment explanation
Indices: 16710122--16710151 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
16710112 ATATTTGTAG
16710122 CTTGCGACGTGA-A
1 CTTGCGACGTGATA
16710135 CTTGCGACGTGATA
1 CTTGCGACGTGATA
16710149 CTT
1 CTT
16710152 ACATTTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (14 bp):
CTTGCGACGTGATA
Found at i:16711194 original size:6 final size:6
Alignment explanation
Indices: 16711186--16711215 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
16711176 AAGACTCCAT
*
16711186 AAACAT AAACAC AAACAC AAACAC AAACAC
1 AAACAC AAACAC AAACAC AAACAC AAACAC
16711216 TCACCCCCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.67, C:0.30, G:0.00, T:0.03
Consensus pattern (6 bp):
AAACAC
Found at i:16717345 original size:17 final size:17
Alignment explanation
Indices: 16717291--16717347 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
16717281 CCTAAAGTTT
16717291 AAATTTACTAAAAATAAA
1 AAATTT-CTAAAAATAAA
* * ***
16717309 ACA-TGCTAAAAATGTG
1 AAATTTCTAAAAATAAA
16717325 AAATTTCTAAAAATAAA
1 AAATTTCTAAAAATAAA
16717342 AAATTT
1 AAATTT
16717348 AAACAACTTC
Statistics
Matches: 28, Mismatches: 10, Indels: 3
0.68 0.24 0.07
Matches are distributed among these distances:
16 10 0.36
17 16 0.57
18 2 0.07
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.30
Consensus pattern (17 bp):
AAATTTCTAAAAATAAA
Found at i:16718071 original size:33 final size:33
Alignment explanation
Indices: 16718033--16718099 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
16718023 AGAATGGGAG
16718033 GAAAAATGCATGAAACAACAAACCTATGTCTAA
1 GAAAAATGCATGAAACAACAAACCTATGTCTAA
16718066 GAAAAATGCATGAAACAACAAACCTATGTCTAA
1 GAAAAATGCATGAAACAACAAACCTATGTCTAA
16718099 G
1 G
16718100 GCATTTAATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.51, C:0.18, G:0.13, T:0.18
Consensus pattern (33 bp):
GAAAAATGCATGAAACAACAAACCTATGTCTAA
Found at i:16721518 original size:22 final size:22
Alignment explanation
Indices: 16721491--16721542 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
16721481 TAGACATCTA
16721491 TTTCTTTATTTCATTGCTTACC
1 TTTCTTTATTTCATTGCTTACC
*
16721513 TTTCTTTATTTCATTGTTTACC
1 TTTCTTTATTTCATTGCTTACC
*
16721535 CTT-TTTAT
1 TTTCTTTAT
16721543 ACCATTCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.13, C:0.19, G:0.04, T:0.63
Consensus pattern (22 bp):
TTTCTTTATTTCATTGCTTACC
Found at i:16722340 original size:33 final size:33
Alignment explanation
Indices: 16722266--16722355 Score: 92
Period size: 33 Copynumber: 2.7 Consensus size: 33
16722256 ACTTTAGCAC
*
16722266 AGTCCAAGTTGTTTTATTTTCAAACCTTCACTT
1 AGTCCAAGTTATTTTATTTTCAAACCTTCACTT
* * * **
16722299 GGTTCAAGTTATTTTATTCTCAAA-CTATGGCTT
1 AGTCCAAGTTATTTTATTTTCAAACCT-TCACTT
* *
16722332 AGTCCAAGTCATCTTATTTTCAAA
1 AGTCCAAGTTATTTTATTTTCAAA
16722356 TTTTGATTGA
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
32 2 0.04
33 43 0.96
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.43
Consensus pattern (33 bp):
AGTCCAAGTTATTTTATTTTCAAACCTTCACTT
Found at i:16722473 original size:132 final size:133
Alignment explanation
Indices: 16722171--16722502 Score: 335
Period size: 132 Copynumber: 2.5 Consensus size: 133
16722161 AACTTACTAT
* * * *
16722171 AAGTTGTTTTATTCTTAGACTTTGGCTTAGTCTAAGTCACCTTATTTTTAGACTTTGATTTAATC
1 AAGTTATTTTATTCTTAGACTTTGGCTTAGTCTAAGTCACCTTATTTTCAAACTTTGATTGAATC
* * * **
16722236 CACATCAAGTTGTGTTTCAAACTTTAGCACAGTCCAAGTTGTTTTATTTTCAAACCTTCACTTGG
66 CACATCAAGTTGTGTTTCAAACTTTAGCACAATCCAAGTTATTTTAGTTTCAAACCTTCACTTCA
16722301 TTC
131 TTC
* * * * * *
16722304 AAGTTATTTTATTCTCAAACTATGGCTTAGTCCAAGTCATCTTATTTTCAAATTTTGATTGAATC
1 AAGTTATTTTATTCTTAGACTTTGGCTTAGTCTAAGTCACCTTATTTTCAAACTTTGATTGAATC
** * * * * * **
16722369 CATGTTAAGTTGT-TTTTAGACTTTAGCATAATCCAGGTTATTTTAGTTTCAAACCTTGGC-TCA
66 CACATCAAGTTGTGTTTCAAACTTTAGCACAATCCAAGTTATTTTAGTTTCAAACCTTCACTTCA
16722432 TTC
131 TTC
* * * * * * * * * *
16722435 TAGGTTATTTTATTCTTAGACTTTGACTCAATCTAAGTCACTTTGTTTTTAGACTTTAATTTAAT
1 -AAGTTATTTTATTCTTAGACTTTGGCTTAGTCTAAGTCACCTTATTTTCAAACTTTGATTGAAT
16722500 CCA
65 CCA
16722503 GGTATAATTG
Statistics
Matches: 158, Mismatches: 40, Indels: 3
0.79 0.20 0.01
Matches are distributed among these distances:
131 4 0.03
132 89 0.56
133 65 0.41
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.45
Consensus pattern (133 bp):
AAGTTATTTTATTCTTAGACTTTGGCTTAGTCTAAGTCACCTTATTTTCAAACTTTGATTGAATC
CACATCAAGTTGTGTTTCAAACTTTAGCACAATCCAAGTTATTTTAGTTTCAAACCTTCACTTCA
TTC
Found at i:16722632 original size:33 final size:33
Alignment explanation
Indices: 16722578--16722653 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
16722568 AAGTCACTTT
* ** *
16722578 ATTTTCAAACTTCAATTTAATCCATGTCAAATG
1 ATTTTCAAACTTAAACATAATCCAAGTCAAATG
** *
16722611 ATTTTCAAACTTAAACATAATCCAAGTCATTTT
1 ATTTTCAAACTTAAACATAATCCAAGTCAAATG
16722644 ATTTTCAAAC
1 ATTTTCAAAC
16722654 CTTGACTTAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.39
Consensus pattern (33 bp):
ATTTTCAAACTTAAACATAATCCAAGTCAAATG
Found at i:16726362 original size:23 final size:23
Alignment explanation
Indices: 16726319--16726363 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
16726309 AAAAAAATAA
*
16726319 ATTTATTTCATTTAGATTATTTC
1 ATTTATTTCATTTAGAATATTTC
*
16726342 ATTTATTTTCCTTTA-AATATTT
1 ATTTA-TTTCATTTAGAATATTT
16726364 ATTACTCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (23 bp):
ATTTATTTCATTTAGAATATTTC
Found at i:16726616 original size:21 final size:21
Alignment explanation
Indices: 16726590--16726631 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
16726580 TGCTCCAGTA
*
16726590 ATTTGTTTCT-TTTTTTTTTCT
1 ATTTGTTT-TATTTTTCTTTCT
16726611 ATTTGTTTTATTTTTCTTTCT
1 ATTTGTTTTATTTTTCTTTCT
16726632 TTTAAAGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.07, C:0.10, G:0.05, T:0.79
Consensus pattern (21 bp):
ATTTGTTTTATTTTTCTTTCT
Found at i:16727258 original size:7 final size:7
Alignment explanation
Indices: 16727246--16727277 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
16727236 TATTTATATA
16727246 AAATTTT
1 AAATTTT
16727253 AAATTTT
1 AAATTTT
16727260 AAATTTT
1 AAATTTT
16727267 AAATTTT
1 AAATTTT
16727274 AAAT
1 AAAT
16727278 GCGTAATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
AAATTTT
Found at i:16730089 original size:24 final size:24
Alignment explanation
Indices: 16730060--16730119 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
16730050 AAACAATAGT
16730060 AAAAATTATAATAATTACGATTAA
1 AAAAATTATAATAATTACGATTAA
*
16730084 AAAAATTACT-GTAATTACGATTAA
1 AAAAATTA-TAATAATTACGATTAA
16730108 AAAAA--ATAATAA
1 AAAAATTATAATAA
16730120 AAAATTTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 1 0.03
22 4 0.12
24 26 0.81
25 1 0.03
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (24 bp):
AAAAATTATAATAATTACGATTAA
Found at i:16731318 original size:16 final size:18
Alignment explanation
Indices: 16731297--16731329 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
16731287 ATTCATTTCA
16731297 TTATTA-AAAA-AATTAT
1 TTATTATAAAATAATTAT
16731313 TTATTATAAAATAATTA
1 TTATTATAAAATAATTA
16731330 ATAAATCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TTATTATAAAATAATTAT
Found at i:16734920 original size:5 final size:6
Alignment explanation
Indices: 16734855--16734948 Score: 55
Period size: 6 Copynumber: 15.0 Consensus size: 6
16734845 CCCAATAGGC
* * ** * *
16734855 TTTTAG TTTTAT TTTTAT TTTTAT TATTTGT CTATTTAT TAATAT ATATAT
1 TTTTAT TTTTAT TTTTAT TTTTAT T-TTTAT -T-TTTAT TTTTAT TTTTAT
* **
16734906 TTTTAT TTTTAT TTTT-T TATCTAT TAATAT TTTTAT TATTTAT
1 TTTTAT TTTTAT TTTTAT T-TTTAT TTTTAT TTTTAT T-TTTAT
16734949 CTGCTTTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
5 2 0.03
6 49 0.71
7 12 0.17
8 6 0.09
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:16734930 original size:24 final size:23
Alignment explanation
Indices: 16734864--16735039 Score: 77
Period size: 23 Copynumber: 7.7 Consensus size: 23
16734854 CTTTTAGTTT
*
16734864 TATTTTTATTTTTATTATTTGTC
1 TATTTTTATTTTTATTATTTATC
* *
16734887 TATTTATTA-ATATATATATTT-T-
1 TATTT-TTATTTTTAT-TATTTATC
16734909 TATTTTTA---TT-TT-TTTATC
1 TATTTTTATTTTTATTATTTATC
**
16734927 TATTAATATTTTTATTATTTATC
1 TATTTTTATTTTTATTATTTATC
**
16734950 TGCTTTTATTTTTTATTA-TTAT-
1 TATTTTTA-TTTTTATTATTTATC
16734972 TATTTATCTATTTCTT-TTATTTATC
1 TATTT-T-TATTT-TTATTATTTATC
* * *
16734997 TAATTATTTTTTTGTTATCTATTAATA
1 T-ATT-TTTATTT-TTAT-TATTTATC
* *
16735024 TATTTATCTTTTTATT
1 TATTTTTATTTTTATT
16735040 TTGATTAATT
Statistics
Matches: 117, Mismatches: 17, Indels: 38
0.68 0.10 0.22
Matches are distributed among these distances:
16 3 0.03
17 2 0.02
18 7 0.06
19 1 0.01
21 5 0.04
22 10 0.09
23 32 0.27
24 29 0.25
25 12 0.10
26 8 0.07
27 8 0.07
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (23 bp):
TATTTTTATTTTTATTATTTATC
Found at i:16734931 original size:36 final size:39
Alignment explanation
Indices: 16734864--16734935 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
16734854 CTTTTAGTTT
*
16734864 TATTTTTATTTTTATTATTTGTCTATTTATTAATATATA
1 TATTTTTATTTTTATTATTTGTCTATCTATTAATATATA
16734903 TATTTTTATTTTTATT-TTT-T-TATCTATTAATAT
1 TATTTTTATTTTTATTATTTGTCTATCTATTAATAT
16734936 TTTTATTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
36 12 0.38
37 1 0.03
38 3 0.09
39 16 0.50
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.69
Consensus pattern (39 bp):
TATTTTTATTTTTATTATTTGTCTATCTATTAATATATA
Found at i:16734936 original size:30 final size:30
Alignment explanation
Indices: 16734870--16735007 Score: 96
Period size: 33 Copynumber: 4.2 Consensus size: 30
16734860 GTTTTATTTT
* * * *
16734870 TATTTTTATTATTTGTCTATTTATTAATATATA
1 TATTTTTATT-TTTATTTTTTTATTTAT-TA-A
*
16734903 TATTTTTATTTTTATTTTTTTATCTATTAA
1 TATTTTTATTTTTATTTTTTTATTTATTAA
* * *
16734933 TATTTTTATTATTTATCTGCTTTTATTTTTTAT
1 TATTTTTATT-TTTAT-T-TTTTTATTTATTAA
*
16734966 TATTATTATTTATCTATTTCTTTTATTTATCTAA
1 TATTTTTATTT-T-TATTT-TTTTATTTAT-TAA
16735000 TTATTTTT
1 -TATTTTT
16735008 TTGTTATCTA
Statistics
Matches: 83, Mismatches: 14, Indels: 14
0.75 0.13 0.13
Matches are distributed among these distances:
30 11 0.13
31 7 0.08
32 14 0.17
33 40 0.48
34 5 0.06
35 6 0.07
ACGTcount: A:0.24, C:0.05, G:0.01, T:0.70
Consensus pattern (30 bp):
TATTTTTATTTTTATTTTTTTATTTATTAA
Found at i:16734947 original size:23 final size:23
Alignment explanation
Indices: 16734909--16735030 Score: 71
Period size: 24 Copynumber: 5.4 Consensus size: 23
16734899 TATATATTTT
*
16734909 TATTTTTATTTTTTTATCTATTAA
1 TATTTTTA-TTATTTATCTATTAA
* *
16734933 TATTTTTATTATTTATCTGCTT-T
1 TATTTTTATTATTTATCT-ATTAA
*
16734956 TATTTTTTATTA-TTAT-TATTTATC
1 TA-TTTTTATTATTTATCTA-TTA-A
*
16734980 TATTTCTT-TTATTTATCTA--AT
1 TATTT-TTATTATTTATCTATTAA
*
16735001 TATTTTT-TT-GTTATCTATTAA
1 TATTTTTATTATTTATCTATTAA
*
16735022 TATATTTAT
1 TATTTTTAT
16735031 CTTTTTATTT
Statistics
Matches: 78, Mismatches: 9, Indels: 24
0.70 0.08 0.22
Matches are distributed among these distances:
19 7 0.09
20 4 0.05
21 12 0.15
22 5 0.06
23 21 0.27
24 27 0.35
25 2 0.03
ACGTcount: A:0.24, C:0.06, G:0.02, T:0.69
Consensus pattern (23 bp):
TATTTTTATTATTTATCTATTAA
Found at i:16734983 original size:17 final size:17
Alignment explanation
Indices: 16734963--16735032 Score: 63
Period size: 17 Copynumber: 4.1 Consensus size: 17
16734953 TTTTATTTTT
16734963 TATTATTATTATTTATC
1 TATTATTATTATTTATC
*
16734980 TATT-TCTTTTATTTATC
1 TATTAT-TATTATTTATC
* *
16734997 TAATTATTTTTTTGTTATC
1 T-ATTATTATTAT-TTATC
*
16735016 TATTAATA-TATTTATC
1 TATTATTATTATTTATC
16735032 T
1 T
16735033 TTTTATTTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
16 7 0.16
17 17 0.39
18 13 0.30
19 7 0.16
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.66
Consensus pattern (17 bp):
TATTATTATTATTTATC
Found at i:16735009 original size:47 final size:51
Alignment explanation
Indices: 16734933--16735036 Score: 114
Period size: 47 Copynumber: 2.1 Consensus size: 51
16734923 TATCTATTAA
**
16734933 TATTTTTATTATTTATCT-GCTTTTATTTT-TTAT-TATT-AT-TATTTATC
1 TATTTTT-TTATTTATCTAATTTTTATTTTGTTATCTATTAATATATTTATC
16734980 TATTTCTTTTATTTATCTAATTATTT-TTTTGTTATCTATTAATATATTTATC
1 TATTT-TTTTATTTATCTAATT-TTTATTTTGTTATCTATTAATATATTTATC
16735032 T-TTTT
1 TATTTT
16735037 ATTTTGATTA
Statistics
Matches: 48, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
47 15 0.31
48 7 0.15
49 7 0.15
50 5 0.10
51 5 0.10
52 9 0.19
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.69
Consensus pattern (51 bp):
TATTTTTTTATTTATCTAATTTTTATTTTGTTATCTATTAATATATTTATC
Done.