Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27802247
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 124000 characters in sequence are not A, C, G, or T
File 91 of 147
Found at i:16735414 original size:31 final size:31
Alignment explanation
Indices: 16735378--16735437 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
16735368 TTTTGGTTGA
*
16735378 ATTTTTT-GACGAACTTTAAATTTTTCGATG
1 ATTTTTTCGACCAACTTTAAATTTTTCGATG
*
16735408 ATTTTTTCGACCAAGTTTAAATTTTTCGAT
1 ATTTTTTCGACCAACTTTAAATTTTTCGAT
16735438 CAGCTTCCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.50
Consensus pattern (31 bp):
ATTTTTTCGACCAACTTTAAATTTTTCGATG
Found at i:16735854 original size:3 final size:3
Alignment explanation
Indices: 16735846--16735890 Score: 65
Period size: 3 Copynumber: 14.7 Consensus size: 3
16735836 TACAGGTTTT
16735846 TTA TTA TTA TTA TTA TTA TT- TTA TTTA TTTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TT
16735891 TATTTATTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.05
3 31 0.77
4 7 0.17
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:16735883 original size:25 final size:24
Alignment explanation
Indices: 16735845--16735898 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 24
16735835 TTACAGGTTT
16735845 TTTA-TTATTATTATTATTATTTTA
1 TTTATTTATTATTATTATTA-TTTA
16735869 TTTATTTATTATTATTATTATTTA
1 TTTATTTATTATTATTATTATTTA
16735893 TTTATT
1 TTTATT
16735899 AGATTAGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 14 0.48
25 15 0.52
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTATTTATTATTATTATTATTTA
Found at i:16735904 original size:16 final size:16
Alignment explanation
Indices: 16735845--16735904 Score: 58
Period size: 16 Copynumber: 4.0 Consensus size: 16
16735835 TTACAGGTTT
*
16735845 TTTATTATTATTATTA
1 TTTATTATTATGATTA
16735861 -TTATT-TTAT--TTA
1 TTTATTATTATGATTA
*
16735873 TTTATTATTATTATTA
1 TTTATTATTATGATTA
16735889 TTTATTTATTA-GATTA
1 TTTA-TTATTATGATTA
16735905 GAATTGTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.08
13 5 0.13
14 8 0.21
15 5 0.13
16 11 0.29
17 6 0.16
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (16 bp):
TTTATTATTATGATTA
Found at i:16735930 original size:5 final size:5
Alignment explanation
Indices: 16735920--16735977 Score: 59
Period size: 5 Copynumber: 11.8 Consensus size: 5
16735910 GTTTAATACT
* *
16735920 TTTTA TTTTA TTTTA TTTTA TTTT- TTAT- TTTTA TTTCCA TTTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT-TA -TTTTA TTTTA
16735970 -TTTA TTTT
1 TTTTA TTTT
16735978 CTTTAAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 10 0.22
5 30 0.67
6 2 0.04
7 3 0.07
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:16735947 original size:17 final size:17
Alignment explanation
Indices: 16735925--16735977 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 17
16735915 ATACTTTTTA
16735925 TTTTATTTTATTTTATT
1 TTTTATTTTATTTTATT
*
16735942 TTTTATTTTTATTTCCA-T
1 TTTTA-TTTTATTT-TATT
16735960 TTTTATTTTA-TTTATT
1 TTTTATTTTATTTTATT
16735976 TT
1 TT
16735978 CTTTAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
15 1 0.03
16 5 0.16
17 10 0.32
18 14 0.45
19 1 0.03
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTTTATTTTATT
Found at i:16735982 original size:18 final size:16
Alignment explanation
Indices: 16735919--16735982 Score: 56
Period size: 18 Copynumber: 3.7 Consensus size: 16
16735909 TGTTTAATAC
*
16735919 TTTTTATTTTATTTTA
1 TTTTTTTTTTATTTTA
16735935 TTTTATTTTTTATTTTTA
1 TTTT-TTTTTTA-TTTTA
**
16735953 TTTCCATTTTTATTTTA
1 TTT-TTTTTTTATTTTA
16735970 TTTATTTTCTTTA
1 TTT-TTTT-TTTA
16735983 AAAAAAATTC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
16 4 0.11
17 16 0.42
18 18 0.47
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTTTTTTATTTTA
Found at i:16736065 original size:58 final size:57
Alignment explanation
Indices: 16735996--16736270 Score: 290
Period size: 58 Copynumber: 4.8 Consensus size: 57
16735986 AAAATTCAAA
*
16735996 AAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAG-TTTCT
* * *
16736054 AAAAAATATTTTCGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTT-T
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTCT
* * * *
16736110 CAAAAATAGAATTTTAAGGAAAAGTTGAAAGTATCAATTTT-CTTCGAAATTAAAGTTTCT
1 -AAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAAT-AAGTTTCT
* * * * *
16736170 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATTAATTTT-TTTCGAAATTAAAATTTTT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAAT-AAGTTTCT
* * * *
16736228 TAAAAATA-TTTTG-GGAAAAAATTGAAAGTATTAATTTCCCTTG
1 AAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTG
16736271 TACAAAAGTA
Statistics
Matches: 188, Mismatches: 22, Indels: 15
0.84 0.10 0.07
Matches are distributed among these distances:
56 3 0.02
57 37 0.20
58 136 0.72
59 11 0.06
60 1 0.01
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTCT
Found at i:16736446 original size:10 final size:10
Alignment explanation
Indices: 16736433--16736459 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
16736423 GTCAATTGAG
16736433 AATAATTTTC
1 AATAATTTTC
16736443 AATAATTTTC
1 AATAATTTTC
16736453 AATAATT
1 AATAATT
16736460 AATTACTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (10 bp):
AATAATTTTC
Found at i:16738364 original size:63 final size:62
Alignment explanation
Indices: 16738275--16738581 Score: 275
Period size: 63 Copynumber: 4.9 Consensus size: 62
16738265 TTTTTGCCTG
* * * *
16738275 AAACACCTTTAATAATCC-CTTATAAAAAATTAGAAGGGATTCTTGAAGGTGTTTTTTTGTAGA
1 AAACACCTTCAATAATCCTC-TCTAAAAAATTAGAAGGGATTATTGAAGGCGTTTTTTTGTA-A
* * * * *
16738338 AAATACCTTCGATAATCCTCTTTAAAAAATTAGAAGGGATTATTGAAGGC-ATTTTTGGTTAA
1 AAACACCTTCAATAATCCTCTCTAAAAAATTAGAAGGGATTATTGAAGGCGTTTTTTTG-TAA
* * * *
16738400 AAACATCATCAATAATCTTCTCAAAAAAATT-GAAGGGGATTATTGAAGGC-TTTTTTTAGTCAA
1 AAACACCTTCAATAATCCTCTCTAAAAAATTAGAA-GGGATTATTGAAGGCGTTTTTTT-GT-AA
* ** * * * * * **
16738463 AAATACCTTCAATAATTTTCTCATAAAAAA-TAAAAGTGATTATTAAATGCATTTTTTTACAGA
1 AAACACCTTCAATAATCCTCTC-TAAAAAATTAGAAGGGATTATTGAAGGCGTTTTTTTGTA-A
*
16738526 AAACACCTTCAATAATTCTCTCTAAAAAATTAG-AGGGAATTATTGAAGGCGTTTTT
1 AAACACCTTCAATAATCCTCTCTAAAAAATTAGAAGGG-ATTATTGAAGGCGTTTTT
16738582 GACCAGAAAC
Statistics
Matches: 198, Mismatches: 35, Indels: 22
0.78 0.14 0.09
Matches are distributed among these distances:
61 3 0.02
62 63 0.32
63 116 0.59
64 16 0.08
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (62 bp):
AAACACCTTCAATAATCCTCTCTAAAAAATTAGAAGGGATTATTGAAGGCGTTTTTTTGTAA
Found at i:16738414 original size:125 final size:125
Alignment explanation
Indices: 16738285--16738581 Score: 288
Period size: 125 Copynumber: 2.4 Consensus size: 125
16738275 AAACACCTTT
* * *
16738285 AATAATC-CCTTATAAAAAATTAGAA-GGGATTCTTGAAGG-TGTTTTTTTGT-AGAAAATACCT
1 AATAATCTCCTCA-AAAAAATT-GAAGGGGATTATTGAAGGCT-TTTTTTAGTCA-AAAATACCT
* * * *
16738346 TCGATAATCCTCT-TTAAAAAATTAGAAGGGATTATTGAAGGCATTTTTGGTTAAAAACATCATC
62 TCAATAATCCTCTCATAAAAAA-TAAAAGGGATTATTAAAGGCATTTTTGGTTAAAAACATCATC
*
16738410 AATAATCTTCTCAAAAAAATTGAAGGGGATTATTGAAGGCTTTTTTTAGTCAAAAATACCTTCAA
1 AATAATCTCCTCAAAAAAATTGAAGGGGATTATTGAAGGCTTTTTTTAGTCAAAAATACCTTCAA
** * * * *
16738475 TAATTTTCTCATAAAAAATAAAAGTGATTATTAAATGCATTTTT--TTACAGAAAACACCTTC
66 TAATCCTCTCATAAAAAATAAAAGGGATTATTAAAGGCATTTTTGGTT--A-AAAACATCATC
* * *
16738536 AATAAT-TCTCTCTAAAAAATT-AGAGGGAATTATTGAAGGCGTTTTT
1 AATAATCTC-CTCAAAAAAATTGA-AGGGGATTATTGAAGGCTTTTTT
16738582 GACCAGAAAC
Statistics
Matches: 144, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
123 2 0.01
124 3 0.02
125 80 0.56
126 59 0.41
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (125 bp):
AATAATCTCCTCAAAAAAATTGAAGGGGATTATTGAAGGCTTTTTTTAGTCAAAAATACCTTCAA
TAATCCTCTCATAAAAAATAAAAGGGATTATTAAAGGCATTTTTGGTTAAAAACATCATC
Found at i:16744907 original size:43 final size:43
Alignment explanation
Indices: 16744859--16744956 Score: 115
Period size: 44 Copynumber: 2.3 Consensus size: 43
16744849 TTTCAAAGAG
* * *
16744859 AAATAAAAAATTTTTAAATAAAACCAAATGGTGAAAATTTTGA
1 AAATAAAAAAATTCTAAATAAAACCAAATGGTGAAAATTTGGA
* ** *
16744902 AAATAAAAAAAATTCTAAGTAACCCCAAATTGTGAAAATTTGGA
1 AAAT-AAAAAAATTCTAAATAAAACCAAATGGTGAAAATTTGGA
*
16744946 AACTAAAAAAA
1 AAATAAAAAAA
16744957 GAAGATATTT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 11 0.24
44 35 0.76
ACGTcount: A:0.57, C:0.08, G:0.09, T:0.26
Consensus pattern (43 bp):
AAATAAAAAAATTCTAAATAAAACCAAATGGTGAAAATTTGGA
Found at i:16748303 original size:171 final size:171
Alignment explanation
Indices: 16748018--16748359 Score: 630
Period size: 171 Copynumber: 2.0 Consensus size: 171
16748008 GGGTCAGATG
* *
16748018 CCAATAAAAGCCCTTCACCTGATTGCATAGGGGTATAATTTTGAAAAGAACAAGGGTGTTACTCA
1 CCAATAAAAGCCCTTCACCTGATTACATAAGGGTATAATTTTGAAAAGAACAAGGGTGTTACTCA
16748083 TCATTTTAAAATTTCTTTTAGAGTAATGTTACGATTTTTTTTATGCAATAAGATTTCATTTGTTA
66 TCATTTTAAAATTTCTTTTAGAGTAATGTTACGATTTTTTTTATGCAATAAGATTTCATTTGTTA
16748148 TCATTTTAATAAAAGGCAAGTTGATGCATTTTATTACATTT
131 TCATTTTAATAAAAGGCAAGTTGATGCATTTTATTACATTT
* *
16748189 CCAATAAAAGCCCTTCACTTGATTACATAAGGGTATAATTTTGAAAAGAACAAGGGTGTTACTCG
1 CCAATAAAAGCCCTTCACCTGATTACATAAGGGTATAATTTTGAAAAGAACAAGGGTGTTACTCA
* *
16748254 TTATTTTAAGATTTCTTTTAGAGTAATGTTACGATTTTTTTTATGCAATAAGATTTCATTTGTTA
66 TCATTTTAAAATTTCTTTTAGAGTAATGTTACGATTTTTTTTATGCAATAAGATTTCATTTGTTA
16748319 TCATTTTAATAAAAGGCAAGTTGATGCATTTTATTACATTT
131 TCATTTTAATAAAAGGCAAGTTGATGCATTTTATTACATTT
16748360 GCTCTTTCAT
Statistics
Matches: 165, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
171 165 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.41
Consensus pattern (171 bp):
CCAATAAAAGCCCTTCACCTGATTACATAAGGGTATAATTTTGAAAAGAACAAGGGTGTTACTCA
TCATTTTAAAATTTCTTTTAGAGTAATGTTACGATTTTTTTTATGCAATAAGATTTCATTTGTTA
TCATTTTAATAAAAGGCAAGTTGATGCATTTTATTACATTT
Found at i:16750831 original size:43 final size:43
Alignment explanation
Indices: 16750765--16751156 Score: 308
Period size: 43 Copynumber: 9.0 Consensus size: 43
16750755 TAATTGTCTT
* * *
16750765 GGAGCTTTATTTATTTTTCAAAGTCATTGAGCCTTTATTTAGA
1 GGAGCCTTATTTATTTTTCAAAGTCGTTGAGCCTCTATTTAGA
* * * *
16750808 GGAGCTTTATTT-GTTTTCTAAAGTTGTTGAGCATCTATTTAGA
1 GGAGCCTTATTTATTTTTC-AAAGTCGTTGAGCCTCTATTTAGA
* ** * * *
16750851 GAAGTTTTATTTATTTTTTTCAAAATCATTGAGCCTTTATTTAGA
1 GGAGCCTTATTTA--TTTTTCAAAGTCGTTGAGCCTCTATTTAGA
* * *
16750896 GGAG-CTTATTTATGTTTTTTCAATGTCATTAAGCCTCTATTTAGA
1 GGAGCCTTATTTA---TTTTTCAAAGTCGTTGAGCCTCTATTTAGA
* * *
16750941 --AGCCTTATTTATTTTTCAAAGTTGTTAAGCCTCTGTTTAGA
1 GGAGCCTTATTTATTTTTCAAAGTCGTTGAGCCTCTATTTAGA
* *
16750982 GAAGCCTTATTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGA
1 GGAGCCTTATTTATTTTTCAAAGTCGTTGAGCCTCTATTTAGA
* ** * **
16751025 AGAGCCTTATTTATTTTTTGAAGTCGTTGAGCATCTGCTTAGAA
1 GGAGCCTTATTTATTTTTCAAAGTCGTTGAGCCTCTATTTAG-A
* * * * * ** * *
16751069 AGAGCTTTAGTTACTTTTCAAAAGTTGCGGAGCCTCTACTTAAA
1 GGAGCCTTATTTATTTTTC-AAAGTCGTTGAGCCTCTATTTAGA
* * *
16751113 GGAGCTTTATTTATTTCTT-ATAAGTTGTAGAGCCTCTATTTAGA
1 GGAGCCTTATTTATTT-TTCA-AAGTCGTTGAGCCTCTATTTAGA
16751157 AGGGTTTTTA
Statistics
Matches: 287, Mismatches: 50, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
41 26 0.09
42 5 0.02
43 120 0.42
44 64 0.22
45 67 0.23
46 5 0.02
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (43 bp):
GGAGCCTTATTTATTTTTCAAAGTCGTTGAGCCTCTATTTAGA
Found at i:16750942 original size:88 final size:87
Alignment explanation
Indices: 16750767--16750956 Score: 235
Period size: 88 Copynumber: 2.2 Consensus size: 87
16750757 ATTGTCTTGG
*
16750767 AGCTTTATTTA--TTTTTCAAAGTCATTGAGCCTTTATTTAGAGGAGCTTTATTTGTTTTCTAAA
1 AGCTTTATTTATTTTTTTCAAAATCATTGAGCCTTTATTTAGAGGAGCTTTATTTGTTTTCTAAA
** *
16750830 GTTGTTGAGCATCTATTTAGAGA
66 GTCATTAAGCATCTATTTA-AGA
* *
16750853 AGTTTTATTTATTTTTTTCAAAATCATTGAGCCTTTATTTAGAGGAGC-TTATTTATGTTTTTTC
1 AGCTTTATTTATTTTTTTCAAAATCATTGAGCCTTTATTTAGAGGAGCTTTA-TT-TGTTTTCT-
* *
16750917 AATGTCATTAAGCCTCTATTT-AGA
63 AAAGTCATTAAGCATCTATTTAAGA
*
16750941 AGCCTTATTTATTTTT
1 AGCTTTATTTATTTTT
16750957 CAAAGTTGTT
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
86 10 0.11
87 3 0.03
88 53 0.60
89 7 0.08
90 16 0.18
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.49
Consensus pattern (87 bp):
AGCTTTATTTATTTTTTTCAAAATCATTGAGCCTTTATTTAGAGGAGCTTTATTTGTTTTCTAAA
GTCATTAAGCATCTATTTAAGA
Found at i:16751093 original size:131 final size:128
Alignment explanation
Indices: 16750821--16751158 Score: 322
Period size: 131 Copynumber: 2.6 Consensus size: 128
16750811 GCTTTATTTG
* * * *
16750821 TTTTCTAAAGTTGTTGAGCATCTATTTAGAGAAGTTTTATTTATTTTTTTCAAAATCATTGAGCC
1 TTTTC-AAAGTTGTTGAGCCTCTATTTAGAGAAGCTTTATTTA--TTTTTCAAAGTCGTTGAGCC
* * * * *
16750886 TTTATTTAGAGGAGCTTATTTATGTTTTTTCAATGTCATTAAGCCTCTATTTAGAAGCCTTATTT
63 TCTATTTAGAAGAGCTTATTTA-GTTTTTTCAATGTCATTAAGCATCTACTTAGAAGCCTTAGTT
*
16750951 AT
127 AC
* * *
16750953 TTTTCAAAGTTGTTAAGCCTCTGTTTAGAGAAGCCTTATTTATTTTTCAAAGTCGTTGAGCCTCT
1 TTTTCAAAGTTGTTGAGCCTCTATTTAGAGAAGCTTTATTTATTTTTCAAAGTCGTTGAGCCTCT
* * * * * *
16751018 GTTTAGAAGAGCCTTATTTA-TTTTTTGAA-GTCGTTGAGCATCTGCTTAGAAAGAGCTTTAGTT
66 ATTTAGAAGAG-CTTATTTAGTTTTTTCAATGTCATTAAGCATCTACTTAG--A-AGCCTTAGTT
16751081 AC
127 AC
** * * * * *
16751083 TTTTCAAAAGTTGCGGAGCCTCTACTTAAAGGAGCTTTATTTATTTCTT-ATAAGTTGTAGAGCC
1 TTTTC-AAAGTTGTTGAGCCTCTATTTAGAGAAGCTTTATTTATTT-TTCA-AAGTCGTTGAGCC
16751147 TCTATTTAGAAG
63 TCTATTTAGAAG
16751159 GGTTTTTATA
Statistics
Matches: 169, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
127 15 0.09
128 8 0.05
129 30 0.18
130 22 0.13
131 65 0.38
132 29 0.17
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (128 bp):
TTTTCAAAGTTGTTGAGCCTCTATTTAGAGAAGCTTTATTTATTTTTCAAAGTCGTTGAGCCTCT
ATTTAGAAGAGCTTATTTAGTTTTTTCAATGTCATTAAGCATCTACTTAGAAGCCTTAGTTAC
Found at i:16752891 original size:43 final size:44
Alignment explanation
Indices: 16752810--16752906 Score: 133
Period size: 44 Copynumber: 2.2 Consensus size: 44
16752800 TTCTGAAGAG
*
16752810 AAATAAAAAAATTTCTAAATAGATCAAAATGATGAAAAATTTAA
1 AAATAAAAAAATTTCTAAATAGATCAAAATGATAAAAAATTTAA
* * *
16752854 AAATAAAAAAATTTCTAAATAGGTCCAAAT-AGTAAAAAATTTGA
1 AAATAAAAAAATTTCTAAATAGATCAAAATGA-TAAAAAATTTAA
*
16752898 AATTAAAAA
1 AAATAAAAA
16752907 GAGAAGATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 1 0.02
44 46 0.98
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.27
Consensus pattern (44 bp):
AAATAAAAAAATTTCTAAATAGATCAAAATGATAAAAAATTTAA
Found at i:16754895 original size:23 final size:22
Alignment explanation
Indices: 16754865--16754910 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
16754855 ATTAAATTTC
16754865 AAATACAAAATCATAAAT-TAAT
1 AAATACAAAATCA-AAATATAAT
16754887 AAATAACAAAATCAAAATATAAT
1 AAAT-ACAAAATCAAAATATAAT
16754910 A
1 A
16754911 TTTAATTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATACAAAATCAAAATATAAT
Found at i:16759913 original size:55 final size:54
Alignment explanation
Indices: 16759816--16759931 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 54
16759806 ATATCATATG
* * ** *
16759816 ATTTATATTAGATTGTTTTATCATATGAAATCATTGGGAATAAATTTTAAAATT
1 ATTTATATTAGATTGTTTTATCATATGAAACCACTGCAAATAAATTATAAAATT
* *
16759870 GTTTATGTTAGATTGTATTTATCATATG-AACCAACTGCAAATAAATTATAAAATT
1 ATTTATATTAGATTGT-TTTATCATATGAAACC-ACTGCAAATAAATTATAAAATT
16759925 ATTTATA
1 ATTTATA
16759932 ATTTAATATA
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
54 17 0.33
55 34 0.67
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44
Consensus pattern (54 bp):
ATTTATATTAGATTGTTTTATCATATGAAACCACTGCAAATAAATTATAAAATT
Found at i:16762176 original size:23 final size:23
Alignment explanation
Indices: 16762150--16762199 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
16762140 ATTTCATGGA
16762150 AACCCCAAAGAAACCCTAAACT-T
1 AACCCCAAA-AAACCCTAAACTCT
* *
16762173 AACCTCTAAAAACCCTAAACTCT
1 AACCCCAAAAAACCCTAAACTCT
16762196 AACC
1 AACC
16762200 TTAAACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.46, C:0.36, G:0.02, T:0.16
Consensus pattern (23 bp):
AACCCCAAAAAACCCTAAACTCT
Found at i:16762185 original size:22 final size:22
Alignment explanation
Indices: 16762160--16762204 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
16762150 AACCCCAAAG
16762160 AAACCCTAAACT-TAACCTCTAA
1 AAACCCTAAACTCTAACCT-TAA
16762182 AAACCCTAAACTCTAACCTTAA
1 AAACCCTAAACTCTAACCTTAA
16762204 A
1 A
16762205 CCAAAACCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (22 bp):
AAACCCTAAACTCTAACCTTAA
Found at i:16762212 original size:13 final size:12
Alignment explanation
Indices: 16762182--16762279 Score: 56
Period size: 13 Copynumber: 7.8 Consensus size: 12
16762172 TAACCTCTAA
*
16762182 AAACCCTAAACTC
1 AAACCTTAAAC-C
*
16762195 TAACCTTAAACC
1 AAACCTTAAACC
*
16762207 AAAACCCTAAAACC
1 -AAA-CCTTAAACC
* *
16762221 TAACCTTAATGCC
1 AAACCTTAA-ACC
16762234 AAACCTTAAA--
1 AAACCTTAAACC
*
16762244 AAATCCTAAAACC
1 AAA-CCTTAAACC
*
16762257 TAACCTTAAACCC
1 AAACCTTAAA-CC
*
16762270 AAACCCTAAA
1 AAACCTTAAA
16762280 AAAATCCTAA
Statistics
Matches: 64, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
10 3 0.05
11 6 0.09
12 12 0.19
13 35 0.55
14 8 0.12
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.18
Consensus pattern (12 bp):
AAACCTTAAACC
Found at i:16762256 original size:36 final size:37
Alignment explanation
Indices: 16762207--16762290 Score: 125
Period size: 36 Copynumber: 2.3 Consensus size: 37
16762197 ACCTTAAACC
* ** *
16762207 AAAACCCTAAAACCTAACCTTAATGCCAAA-CCTTAA
1 AAAATCCTAAAACCTAACCTTAAACCCAAACCCTAAA
16762243 AAAATCCTAAAACCTAACCTTAAACCCAAACCCTAAA
1 AAAATCCTAAAACCTAACCTTAAACCCAAACCCTAAA
16762280 AAAATCCTAAA
1 AAAATCCTAAA
16762291 CCTTAACAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
36 27 0.63
37 16 0.37
ACGTcount: A:0.51, C:0.30, G:0.01, T:0.18
Consensus pattern (37 bp):
AAAATCCTAAAACCTAACCTTAAACCCAAACCCTAAA
Found at i:16762304 original size:36 final size:36
Alignment explanation
Indices: 16762207--16762306 Score: 96
Period size: 36 Copynumber: 2.8 Consensus size: 36
16762197 ACCTTAAACC
* ** ** *
16762207 AAAACCCTAAAACCTAACCTTAATGCCAAACCTTAA
1 AAAATCCTAAAACCTAACCAGAAACCCAAACCTAAA
**
16762243 AAAATCCTAAAACCTAACCTTAAACCCAAACCCTAAA
1 AAAATCCTAAAACCTAACCAGAAACCCAAA-CCTAAA
16762280 AAAATCCT-AAACCTTAA-CAGAAACCCA
1 AAAATCCTAAAACC-TAACCAGAAACCCA
16762307 TAAATACCAT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
36 40 0.71
37 16 0.29
ACGTcount: A:0.50, C:0.31, G:0.02, T:0.17
Consensus pattern (36 bp):
AAAATCCTAAAACCTAACCAGAAACCCAAACCTAAA
Found at i:16762441 original size:14 final size:12
Alignment explanation
Indices: 16762422--16762478 Score: 55
Period size: 11 Copynumber: 4.6 Consensus size: 12
16762412 TAAGCTTAAA
16762422 CTAAACCGTCAACC
1 CTAAACC-T-AACC
16762436 CTAAACCTAA-C
1 CTAAACCTAACC
16762447 CTAAACCCTAAACC
1 CTAAA-CCT-AACC
*
16762461 CTAAA-CAAACC
1 CTAAACCTAACC
16762472 CTAAACC
1 CTAAACC
16762479 CTAGTTGAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
11 15 0.39
12 7 0.18
13 3 0.08
14 13 0.34
ACGTcount: A:0.44, C:0.40, G:0.02, T:0.14
Consensus pattern (12 bp):
CTAAACCTAACC
Found at i:16762442 original size:7 final size:7
Alignment explanation
Indices: 16762422--16762481 Score: 60
Period size: 7 Copynumber: 9.4 Consensus size: 7
16762412 TAAGCTTAAA
16762422 CTAAACC
1 CTAAACC
* *
16762429 GTCAACC
1 CTAAACC
16762436 CTAAA-C
1 CTAAACC
16762442 CT-AA-C
1 CTAAACC
16762447 CTAAACC
1 CTAAACC
16762454 CTAAACC
1 CTAAACC
16762461 CTAAA--
1 CTAAACC
16762466 C-AAACC
1 CTAAACC
16762472 CTAAACC
1 CTAAACC
16762479 CTA
1 CTA
16762482 GTTGAGACCT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
4 3 0.07
5 6 0.14
6 6 0.14
7 29 0.66
ACGTcount: A:0.43, C:0.40, G:0.02, T:0.15
Consensus pattern (7 bp):
CTAAACC
Found at i:16762474 original size:25 final size:25
Alignment explanation
Indices: 16762422--16762481 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
16762412 TAAGCTTAAA
* * *
16762422 CTAAACCGTCAACCCTAAACCTAAC
1 CTAAACCCTAAACCCTAAACCAAAC
16762447 CTAAACCCTAAACCCTAAA-CAAACC
1 CTAAACCCTAAACCCTAAACCAAA-C
16762472 CTAAACCCTA
1 CTAAACCCTA
16762482 GTTGAGACCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 3 0.10
25 28 0.90
ACGTcount: A:0.43, C:0.40, G:0.02, T:0.15
Consensus pattern (25 bp):
CTAAACCCTAAACCCTAAACCAAAC
Found at i:16762479 original size:18 final size:19
Alignment explanation
Indices: 16762432--16762481 Score: 77
Period size: 18 Copynumber: 2.7 Consensus size: 19
16762422 CTAAACCGTC
*
16762432 AACCCTAAA-CCTAACCTA
1 AACCCTAAACCCTAAACTA
16762450 AACCCTAAACCCTAAAC-A
1 AACCCTAAACCCTAAACTA
16762468 AACCCTAAACCCTA
1 AACCCTAAACCCTA
16762482 GTTGAGACCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 24 0.80
19 6 0.20
ACGTcount: A:0.46, C:0.40, G:0.00, T:0.14
Consensus pattern (19 bp):
AACCCTAAACCCTAAACTA
Found at i:16762541 original size:19 final size:21
Alignment explanation
Indices: 16762519--16762566 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
16762509 TTAAACAAGT
*
16762519 CTTAAACCCTGAAC-CTA-AC
1 CTTAAACCCTAAACTCTAGAC
*
16762538 CTTAAATCCTAAACTCTAGAC
1 CTTAAACCCTAAACTCTAGAC
*
16762559 TTTAAACC
1 CTTAAACC
16762567 AAACTTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 12 0.52
20 3 0.13
21 8 0.35
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.27
Consensus pattern (21 bp):
CTTAAACCCTAAACTCTAGAC
Found at i:16762617 original size:18 final size:19
Alignment explanation
Indices: 16762574--16762622 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
16762564 ACCAAACTTT
*
16762574 AAACCCTAAATCTAGCCCC
1 AAACCCTAAATCTAGACCC
* *
16762593 TAACCCTAAATCT-GATCC
1 AAACCCTAAATCTAGACCC
16762611 AAACCCTAAATC
1 AAACCCTAAATC
16762623 CAACCCAAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 14 0.54
19 12 0.46
ACGTcount: A:0.39, C:0.37, G:0.04, T:0.20
Consensus pattern (19 bp):
AAACCCTAAATCTAGACCC
Found at i:16762630 original size:18 final size:18
Alignment explanation
Indices: 16762574--16762630 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
16762564 ACCAAACTTT
*
16762574 AAACCCTAAATCTAGCCCC
1 AAACCCTAAATCTA-ACCC
* * *
16762593 TAACCCTAAATCTGATCC
1 AAACCCTAAATCTAACCC
*
16762611 AAACCCTAAATCCAACCC
1 AAACCCTAAATCTAACCC
16762629 AA
1 AA
16762631 GACATTAAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
18 18 0.60
19 12 0.40
ACGTcount: A:0.40, C:0.39, G:0.04, T:0.18
Consensus pattern (18 bp):
AAACCCTAAATCTAACCC
Found at i:16766535 original size:18 final size:17
Alignment explanation
Indices: 16766508--16766552 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
16766498 CGTGGAAGAA
16766508 AATTTTTTTAATTAATT
1 AATTTTTTTAATTAATT
16766525 AATTATTTTTAATTAA-T
1 AATT-TTTTTAATTAATT
16766542 -A-TTTTTTAATT
1 AATTTTTTTAATT
16766553 CCCTAATATC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 9 0.33
15 1 0.04
16 1 0.04
17 5 0.19
18 11 0.41
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
AATTTTTTTAATTAATT
Found at i:16766538 original size:14 final size:14
Alignment explanation
Indices: 16766519--16766552 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
16766509 ATTTTTTTAA
16766519 TTAATTAAT-TATTT
1 TTAATTAATAT-TTT
16766533 TTAATTAATATTTT
1 TTAATTAATATTTT
16766547 TTAATT
1 TTAATT
16766553 CCCTAATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 18 0.95
15 1 0.05
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTAATTAATATTTT
Found at i:16768051 original size:32 final size:32
Alignment explanation
Indices: 16768015--16768094 Score: 108
Period size: 32 Copynumber: 2.5 Consensus size: 32
16768005 CTCTTTTTCT
* *
16768015 TTTTCTTTTTTTTTTTAAGTTTGCTTA-AATGC
1 TTTTCTTTTTTTTTTT-ACTTTGCTTAGAAAGC
**
16768047 TTTTCTTTTTTTTTTTACTTTTTTTAGAAAGC
1 TTTTCTTTTTTTTTTTACTTTGCTTAGAAAGC
16768079 TTTTCTTTTTTTTTTT
1 TTTTCTTTTTTTTTTT
16768095 TTGGTTTCCT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
31 7 0.16
32 36 0.84
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.72
Consensus pattern (32 bp):
TTTTCTTTTTTTTTTTACTTTGCTTAGAAAGC
Found at i:16768095 original size:33 final size:32
Alignment explanation
Indices: 16768015--16768095 Score: 101
Period size: 31 Copynumber: 2.5 Consensus size: 32
16768005 CTCTTTTTCT
* * *
16768015 TTTTCTTTTTTTTTTTAAGTTTGCTTAAATGC
1 TTTTCTTTTTTTTTTTTACTTTGCTTAAAAGC
**
16768047 TTTTC-TTTTTTTTTTTACTTTTTTTAGAAAGC
1 TTTTCTTTTTTTTTTTTACTTTGCTTA-AAAGC
16768079 TTTTCTTTTTTTTTTTT
1 TTTTCTTTTTTTTTTTT
16768096 TGGTTTCCTT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
31 17 0.40
32 14 0.33
33 11 0.26
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.73
Consensus pattern (32 bp):
TTTTCTTTTTTTTTTTTACTTTGCTTAAAAGC
Found at i:16769161 original size:27 final size:26
Alignment explanation
Indices: 16769118--16769197 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 26
16769108 GTTAGAAAAT
16769118 AAGAATGACTGAGATTAAATCGTAAGTC
1 AAGAATGACTGA-ATTAAATC-TAAGTC
* * *
16769146 AAGGATGA-TCGAATTAAACCATAAGTT
1 AAGAATGACT-GAATTAAATC-TAAGTC
*
16769173 AAGAATGACTGGATTAAATCTAAGT
1 AAGAATGACTGAATTAAATCTAAGT
16769198 TAAATGAAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
26 5 0.12
27 28 0.65
28 10 0.23
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.26
Consensus pattern (26 bp):
AAGAATGACTGAATTAAATCTAAGTC
Found at i:16769828 original size:32 final size:32
Alignment explanation
Indices: 16769792--16769948 Score: 147
Period size: 32 Copynumber: 4.9 Consensus size: 32
16769782 AAAAAAATAA
* *
16769792 GGCTTAAATTTTCATGGGTGCTAGCTAATTTG
1 GGCTTAAATTTTCATAGGTGCTAGCTAATCTG
* *
16769824 GGCTTAAATTTTCATATGTGCTAGCTAAAC-G
1 GGCTTAAATTTTCATAGGTGCTAGCTAATCTG
* * ** *
16769855 AGG-TTTAATCCTTTCTTAGGTGCTAGAAAAACTG
1 -GGCTTAAAT--TTTCATAGGTGCTAGCTAATCTG
* * * *
16769889 GGCATAAATTTTCATGGGTGCCAACTAATCTG
1 GGCTTAAATTTTCATAGGTGCTAGCTAATCTG
*
16769921 GGCTTAAATTTTCATAGGTGCTACCTAA
1 GGCTTAAATTTTCATAGGTGCTAGCTAA
16769949 ACTAAGATTA
Statistics
Matches: 98, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
31 6 0.06
32 68 0.69
33 19 0.19
34 5 0.05
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (32 bp):
GGCTTAAATTTTCATAGGTGCTAGCTAATCTG
Found at i:16772580 original size:24 final size:24
Alignment explanation
Indices: 16772553--16772598 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
16772543 AAGAAATCGC
16772553 TAGGATTATTCTTGAAGAAATTTG
1 TAGGATTATTCTTGAAGAAATTTG
16772577 TAGGATTATTCTTGAAGAAATT
1 TAGGATTATTCTTGAAGAAATT
16772599 CCTTTTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.04, G:0.20, T:0.41
Consensus pattern (24 bp):
TAGGATTATTCTTGAAGAAATTTG
Found at i:16776163 original size:16 final size:16
Alignment explanation
Indices: 16776129--16776160 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
16776119 ATATTTTTGT
16776129 TTTTTATTTTTTTTAA
1 TTTTTATTTTTTTTAA
16776145 TTTTTATTTTTATTTA
1 TTTTTATTTTT-TTTA
16776161 TTTAGACTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTATTTTTTTTAA
Found at i:16777358 original size:19 final size:19
Alignment explanation
Indices: 16777336--16777384 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
16777326 TTAGTAGGTG
** *
16777336 GTTTAGGGTTTGTTTGGTA
1 GTTTAGGGTTTCATGGGTA
*
16777355 GTTTAGAGTTTCATGGGTA
1 GTTTAGGGTTTCATGGGTA
*
16777374 ATTTAGGGTTT
1 GTTTAGGGTTT
16777385 TATGAAAAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.16, C:0.02, G:0.33, T:0.49
Consensus pattern (19 bp):
GTTTAGGGTTTCATGGGTA
Found at i:16778440 original size:3 final size:3
Alignment explanation
Indices: 16778432--16778465 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
16778422 AAATAAATAA
*
16778432 ATT ATT ATT ATT ATT ATT AAT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
16778466 CAATAAAGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:16780400 original size:132 final size:132
Alignment explanation
Indices: 16780127--16780410 Score: 365
Period size: 132 Copynumber: 2.2 Consensus size: 132
16780117 GGCGTGGGGC
* * * * *
16780127 CATGGTACTTTGTCTTCCTTTTGTTTGTTATAAGAGGCAATAAGTCCTAATAACCTTTTGTAGTT
1 CATGGTACTTTGTCTTCCTTCTATTTGTTATAAAAGGCAATAAGTCCAAACAACCTTTTGTAGTT
* * *
16780192 GGAATTTTTAGTGAATAAATTTTTTAAAATATAAATCATATAAACATTAAAATCCAAAACGTGGT
66 AGAATTTTTAATGAATAAATTTTTTAAAATATAAATCATATAAACATTAAAAGCCAAAACGTGGT
16780257 GT
131 GT
* * ** * *
16780259 CAGGGTACTTTGTCTTCCTTCTATTTGTTTTAAAAGGTGATAGGTCCAAACAGCCTTTTGTAGTT
1 CATGGTACTTTGTCTTCCTTCTATTTGTTATAAAAGGCAATAAGTCCAAACAACCTTTTGTAGTT
* * *
16780324 AGAATTTTATAATGAATACATTTTTTAAAATATAAATCATATAAATATTAAAAGCCAAAATGTTG
66 AGAATTTT-TAATGAATAAATTTTTTAAAATATAAATCATATAAACATTAAAAGCCAAAACG-TG
16780389 G-G-
129 GTGT
* *
16780391 CATGATACTTTGTATTCCTT
1 CATGGTACTTTGTCTTCCTT
16780411 TTGTTAGTTT
Statistics
Matches: 130, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
132 78 0.60
133 49 0.38
134 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (132 bp):
CATGGTACTTTGTCTTCCTTCTATTTGTTATAAAAGGCAATAAGTCCAAACAACCTTTTGTAGTT
AGAATTTTTAATGAATAAATTTTTTAAAATATAAATCATATAAACATTAAAAGCCAAAACGTGGT
GT
Found at i:16783429 original size:17 final size:17
Alignment explanation
Indices: 16783392--16783430 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
16783382 TCCACATAGA
16783392 CATAT-TTCATGCATAT
1 CATATATTCATGCATAT
* *
16783408 AATATATTCATGCATTT
1 CATATATTCATGCATAT
16783425 CATATA
1 CATATA
16783431 AATATGTTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.44
Consensus pattern (17 bp):
CATATATTCATGCATAT
Found at i:16793194 original size:16 final size:18
Alignment explanation
Indices: 16793168--16793202 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
16793158 AGTTTTAAGT
16793168 TCTTGCAC-TTTATTTTC
1 TCTTGCACTTTTATTTTC
16793185 TCTT-CACTTTTATTTTC
1 TCTTGCACTTTTATTTTC
16793202 T
1 T
16793203 TGCTTTCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.11, C:0.23, G:0.03, T:0.63
Consensus pattern (18 bp):
TCTTGCACTTTTATTTTC
Found at i:16796478 original size:21 final size:20
Alignment explanation
Indices: 16796435--16796478 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
16796425 TTTACAAATA
* *
16796435 TTAAATAAACCATTTATATG
1 TTAAATAAACAATTTACATG
*
16796455 TTAAATAAATAATTTAACATG
1 TTAAATAAACAATTT-ACATG
16796476 TTA
1 TTA
16796479 TATATATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.41
Consensus pattern (20 bp):
TTAAATAAACAATTTACATG
Found at i:16799254 original size:19 final size:18
Alignment explanation
Indices: 16799213--16799250 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
16799203 CAACTAAGAT
16799213 TCAATTTTTTGGAGACTA
1 TCAATTTTTTGGAGACTA
16799231 TCAATTTTTTGGAGACTA
1 TCAATTTTTTGGAGACTA
16799249 TC
1 TC
16799251 CAATAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (18 bp):
TCAATTTTTTGGAGACTA
Found at i:16801141 original size:32 final size:32
Alignment explanation
Indices: 16801105--16801169 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
16801095 TAGACTTAAT
16801105 ATAATCTTAGAATTATTGCTTTAAAGAAAGCA
1 ATAATCTTAGAATTATTGCTTTAAAGAAAGCA
16801137 ATAATCTTAGAATTATTGCTTTAAAGAAAGCA
1 ATAATCTTAGAATTATTGCTTTAAAGAAAGCA
16801169 A
1 A
16801170 ATTTTCAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (32 bp):
ATAATCTTAGAATTATTGCTTTAAAGAAAGCA
Found at i:16801992 original size:25 final size:25
Alignment explanation
Indices: 16801945--16801992 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
16801935 ATACCTTTTG
*
16801945 TAAAATTACATATGTTATTATTTAT
1 TAAAATTACATATGTTATCATTTAT
*
16801970 TAAAATTATCATGTGTT-TCATTT
1 TAAAATTA-CATATGTTATCATTT
16801993 CAAGAGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (25 bp):
TAAAATTACATATGTTATCATTTAT
Found at i:16806175 original size:22 final size:22
Alignment explanation
Indices: 16806149--16806222 Score: 85
Period size: 22 Copynumber: 3.3 Consensus size: 22
16806139 GATTTTTCAA
*
16806149 ATGTGAATCTTTGAAATTTTGG
1 ATGTGAATCTTTAAAATTTTGG
**
16806171 ATGTGAATCTTTAAAATTTTTTA
1 ATGTGAATCTTTAAAA-TTTTGG
* * *
16806194 ATATGAATATTTTAAATTTTGG
1 ATGTGAATCTTTAAAATTTTGG
16806216 ATGTGAA
1 ATGTGAA
16806223 CATCTAAGAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
22 25 0.60
23 17 0.40
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (22 bp):
ATGTGAATCTTTAAAATTTTGG
Found at i:16808637 original size:29 final size:29
Alignment explanation
Indices: 16808604--16808738 Score: 93
Period size: 29 Copynumber: 4.8 Consensus size: 29
16808594 GTTCAAGTTT
16808604 AATTTACATATTGTTATGTTTACTAACTA
1 AATTTACATATTGTTATGTTTACTAACTA
* * **
16808633 AATTTACATTTTGTTTTGTTTA--ATTTA
1 AATTTACATATTGTTATGTTTACTAACTA
* * * * *
16808660 AGTTGT---TA-AGTTCAAGTTTAACTAATTT
1 AATT-TACATATTGTT-ATGTTT-ACTAACTA
16808688 AATTTACATATTGTTATGTTTACTAACTA
1 AATTTACATATTGTTATGTTTACTAACTA
* * *
16808717 AATTTGCATTTTGTTTTGTTTA
1 AATTTACATATTGTTATGTTTA
16808739 ATTTAAGTTG
Statistics
Matches: 78, Mismatches: 19, Indels: 18
0.68 0.17 0.16
Matches are distributed among these distances:
24 3 0.04
25 5 0.06
26 1 0.01
27 7 0.09
28 7 0.09
29 45 0.58
30 7 0.09
31 3 0.04
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (29 bp):
AATTTACATATTGTTATGTTTACTAACTA
Found at i:16808693 original size:84 final size:84
Alignment explanation
Indices: 16808601--16808764 Score: 319
Period size: 84 Copynumber: 2.0 Consensus size: 84
16808591 TTAGTTCAAG
16808601 TTTAATTTACATATTGTTATGTTTACTAACTAAATTTACATTTTGTTTTGTTTAATTTAAGTTGT
1 TTTAATTTACATATTGTTATGTTTACTAACTAAATTTACATTTTGTTTTGTTTAATTTAAGTTGT
16808666 TAAGTTCAAGTTTAACTAA
66 TAAGTTCAAGTTTAACTAA
*
16808685 TTTAATTTACATATTGTTATGTTTACTAACTAAATTTGCATTTTGTTTTGTTTAATTTAAGTTGT
1 TTTAATTTACATATTGTTATGTTTACTAACTAAATTTACATTTTGTTTTGTTTAATTTAAGTTGT
16808750 TAAGTTCAAGTTTAA
66 TAAGTTCAAGTTTAA
16808765 TTTATTTTGT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 79 1.00
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (84 bp):
TTTAATTTACATATTGTTATGTTTACTAACTAAATTTACATTTTGTTTTGTTTAATTTAAGTTGT
TAAGTTCAAGTTTAACTAA
Found at i:16809042 original size:3 final size:3
Alignment explanation
Indices: 16809034--16809070 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
16809024 AACTCAAACT
16809034 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
16809071 CATTTAACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:16809481 original size:27 final size:26
Alignment explanation
Indices: 16809451--16809534 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 26
16809441 GATTTAAGAA
16809451 CTTATTGGAATTAACATTAATCAAACT
1 CTTATTGG-ATTAACATTAATCAAACT
*
16809478 CTTAACTTTG-TTAA-ATT--TCAAACT
1 CTT-A-TTGGATTAACATTAATCAAACT
* *
16809502 CTGATTGTGATTGACATTAATCAAACT
1 CTTATTG-GATTAACATTAATCAAACT
16809529 CTTATT
1 CTTATT
16809535 CTTTTGAGTT
Statistics
Matches: 45, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
22 2 0.04
23 2 0.04
24 12 0.27
25 3 0.07
26 3 0.07
27 19 0.42
28 1 0.02
29 3 0.07
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (26 bp):
CTTATTGGATTAACATTAATCAAACT
Found at i:16810406 original size:2 final size:2
Alignment explanation
Indices: 16810399--16810428 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
16810389 ATGGGTAGTG
16810399 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
16810429 GAGAGAGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:16810433 original size:2 final size:2
Alignment explanation
Indices: 16810428--16810458 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
16810418 ATATATATAT
*
16810428 AG AG AG AG AG AG AG AG AG AG AG AG AG TG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
16810459 AAAGTAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.48, T:0.03
Consensus pattern (2 bp):
AG
Found at i:16817966 original size:8 final size:8
Alignment explanation
Indices: 16817953--16817978 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
16817943 CAAACATATG
16817953 ATGCATGA
1 ATGCATGA
16817961 ATGCATGA
1 ATGCATGA
16817969 ATGCATGA
1 ATGCATGA
16817977 AT
1 AT
16817979 TGAAAAGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (8 bp):
ATGCATGA
Found at i:16821993 original size:19 final size:21
Alignment explanation
Indices: 16821970--16822025 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 21
16821960 TTCTATTTTC
16821970 ATTAATAATTATTT-TTTTA-
1 ATTAATAATTATTTATTTTAG
* *
16821989 CTTAATCATT-TTTATTTTAG
1 ATTAATAATTATTTATTTTAG
*
16822009 ATTAACAATTA-TTATTT
1 ATTAATAATTATTTATTT
16822026 ATTTTTTGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 3 0.10
19 13 0.45
20 13 0.45
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTAATAATTATTTATTTTAG
Found at i:16822023 original size:20 final size:19
Alignment explanation
Indices: 16821963--16822025 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
16821953 AAATTATTTC
* *
16821963 TATTTTCATTAATAATTAT
1 TATTTTAATTAACAATTAT
* * *
16821982 TTTTTTACTTAATC-ATTTT
1 TATTTTAATTAA-CAATTAT
16822001 TATTTTAGATTAACAATTAT
1 TATTTTA-ATTAACAATTAT
16822021 TATTT
1 TATTT
16822026 ATTTTTTGAT
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
19 20 0.61
20 13 0.39
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (19 bp):
TATTTTAATTAACAATTAT
Found at i:16822145 original size:6 final size:6
Alignment explanation
Indices: 16822134--16822187 Score: 51
Period size: 6 Copynumber: 9.2 Consensus size: 6
16822124 CAAAAAAACC
* *
16822134 ATAAAA AT-AAA AT-AAA ATCAAA AT-AAA ATCAAAA ATAAAA ATGAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA AT-AAAA ATAAAA ATAAAA
16822180 ATGAAAA A
1 AT-AAAA A
16822188 AGGAAAAAGG
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
5 15 0.36
6 18 0.43
7 9 0.21
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:16824369 original size:6 final size:6
Alignment explanation
Indices: 16824358--16824391 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
16824348 CCAAAACATG
16824358 CATTTT CATTTT --TTTT CATTTT CATTTT CATTTT
1 CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT
16824392 TGTTTTCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
6 22 0.85
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (6 bp):
CATTTT
Found at i:16827634 original size:2 final size:2
Alignment explanation
Indices: 16827629--16827657 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
16827619 TCTCTCTCTT
16827629 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
16827658 GAACTCTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:16829734 original size:2 final size:2
Alignment explanation
Indices: 16829727--16829756 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
16829717 CAAAACAGAA
16829727 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
16829757 GTGCACACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:16833442 original size:2 final size:2
Alignment explanation
Indices: 16833435--16833463 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
16833425 TTGCACTTGC
16833435 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16833464 GGTAAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16835908 original size:12 final size:12
Alignment explanation
Indices: 16835891--16835931 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
16835881 TAAAAGTTTA
16835891 AATTTTTTGATG
1 AATTTTTTGATG
*
16835903 AATTTTTTGTTG
1 AATTTTTTGATG
*
16835915 GA-TTTTTGATG
1 AATTTTTTGATG
16835926 -ATTTTT
1 AATTTTT
16835932 CCAAAAATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
10 1 0.04
11 12 0.48
12 12 0.48
ACGTcount: A:0.20, C:0.00, G:0.17, T:0.63
Consensus pattern (12 bp):
AATTTTTTGATG
Found at i:16836204 original size:18 final size:18
Alignment explanation
Indices: 16836178--16836217 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
16836168 TATCATAGAT
**
16836178 TTTTCTTTTTTTATTTTA
1 TTTTCTTTTTCGATTTTA
*
16836196 TTTTGTTTTTCGATTTTA
1 TTTTCTTTTTCGATTTTA
16836214 TTTT
1 TTTT
16836218 TATTTAGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.10, C:0.05, G:0.05, T:0.80
Consensus pattern (18 bp):
TTTTCTTTTTCGATTTTA
Found at i:16836234 original size:29 final size:29
Alignment explanation
Indices: 16836185--16836251 Score: 68
Period size: 29 Copynumber: 2.3 Consensus size: 29
16836175 GATTTTTCTT
* *
16836185 TTTTTATTTTATTTTGTTTTTCGA-TTTT-A
1 TTTTTA-TTTAGTTTATTTTT-GAGTTTTCA
16836214 TTTTTATTTAGTTTATATTTTGAGTTTTCA
1 TTTTTATTTAGTTTAT-TTTTGAGTTTTCA
16836244 -TTTTATTT
1 TTTTTATTT
16836252 TCAGTTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 10 0.30
29 22 0.67
30 1 0.03
ACGTcount: A:0.16, C:0.03, G:0.07, T:0.73
Consensus pattern (29 bp):
TTTTTATTTAGTTTATTTTTGAGTTTTCA
Found at i:16836252 original size:18 final size:18
Alignment explanation
Indices: 16836185--16836257 Score: 55
Period size: 18 Copynumber: 4.1 Consensus size: 18
16836175 GATTTTTCTT
* *
16836185 TTTTTATTTTATTTTG-T
1 TTTTCATTTTATTTTGAG
*
16836202 TTTTCGATTTTATTTTTA-
1 TTTTC-ATTTTATTTTGAG
16836220 -TTT-AGTTTATATTTTGAG
1 TTTTCA-TTT-TATTTTGAG
*
16836238 TTTTCATTTTATTTTCAG
1 TTTTCATTTTATTTTGAG
16836256 TT
1 TT
16836258 ATTTTATTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
15 1 0.02
16 3 0.07
17 14 0.31
18 20 0.44
19 6 0.13
20 1 0.02
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.71
Consensus pattern (18 bp):
TTTTCATTTTATTTTGAG
Found at i:16836264 original size:35 final size:35
Alignment explanation
Indices: 16836194--16836264 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
16836184 TTTTTTATTT
* * *
16836194 TATTTTGTTTTTCGATTTTATTTTTATTTAGTTTA
1 TATTTTGGTTTTCGATTTTATTTTCAGTTAGTTTA
*
16836229 TATTTTGAGTTTTC-ATTTTATTTTCAGTTATTTTA
1 TATTTTG-GTTTTCGATTTTATTTTCAGTTAGTTTA
16836264 T
1 T
16836265 TTATTTTACT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 26 0.84
36 5 0.16
ACGTcount: A:0.18, C:0.04, G:0.08, T:0.69
Consensus pattern (35 bp):
TATTTTGGTTTTCGATTTTATTTTCAGTTAGTTTA
Found at i:16836384 original size:7 final size:6
Alignment explanation
Indices: 16836357--16836382 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
16836347 AAAACATATT
16836357 AATAAA AATAAA AATAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AA
16836383 ATCTTTTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:16838108 original size:2 final size:2
Alignment explanation
Indices: 16838101--16838129 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
16838091 TTGTAAGAAC
16838101 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16838130 AAGAGGCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16838288 original size:18 final size:18
Alignment explanation
Indices: 16838267--16838324 Score: 64
Period size: 17 Copynumber: 3.1 Consensus size: 18
16838257 GTCAAAAAAT
16838267 ATTATTATTATTATTTTA
1 ATTATTATTATTATTTTA
*
16838285 ATTATT-TTATAATTTTGA
1 ATTATTATTATTATTTT-A
*
16838303 ATATATTTATAATTATTTTA
1 AT-TA-TTATTATTATTTTA
16838323 AT
1 AT
16838325 ATAAAAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 9 0.27
18 9 0.27
19 2 0.06
20 5 0.15
21 8 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
ATTATTATTATTATTTTA
Found at i:16838326 original size:18 final size:18
Alignment explanation
Indices: 16838271--16838326 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 18
16838261 AAAAATATTA
*
16838271 TTATTATTATTTTAATTATT
1 TTATAATTATTTTAA-TA-T
**
16838291 TTATAATT-TTGAATATAT
1 TTATAATTATTTTA-ATAT
16838309 TTATAATTATTTTAATAT
1 TTATAATTATTTTAATAT
16838327 AAAAATAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
18 13 0.45
19 8 0.28
20 8 0.28
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
TTATAATTATTTTAATAT
Found at i:16838342 original size:18 final size:18
Alignment explanation
Indices: 16838321--16838364 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
16838311 ATAATTATTT
16838321 TAATATAA-AAATAATAAA
1 TAATATAATAAATAA-AAA
*
16838339 TAATAAAATAAATAAAAA
1 TAATATAATAAATAAAAA
*
16838357 TATTATAA
1 TAATATAA
16838365 GAGTATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TAATATAATAAATAAAAA
Found at i:16838645 original size:16 final size:16
Alignment explanation
Indices: 16838601--16838648 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
16838591 TTTATTATAG
*
16838601 TAATTTAATATGTAGT
1 TAATTTAATATGTAAT
16838617 TAAATTT--TATGTAAT
1 T-AATTTAATATGTAAT
16838632 TAATTTAATATGTAAT
1 TAATTTAATATGTAAT
16838648 T
1 T
16838649 TAATAAAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
14 5 0.18
15 8 0.29
16 10 0.36
17 5 0.18
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (16 bp):
TAATTTAATATGTAAT
Found at i:16838903 original size:59 final size:60
Alignment explanation
Indices: 16838802--16838957 Score: 165
Period size: 59 Copynumber: 2.6 Consensus size: 60
16838792 TGTATTTCTA
* * * * * ***
16838802 TAATTATAATAAGAGAAATATTATAATAATTTTGATCTATTATGATAGGAGGGTATTTTCT-
1 TAATTATAATAAAAGAGACATTATAATAATTTT-AACTATTATGATAGAAAAATATTTT-TG
* * *
16838863 TAATTATAGTAAAA-A-CCATTATAATACTTTTAACTAATTATGATAGAAAAATATTTTTG
1 TAATTATAATAAAAGAGACATTATAATAATTTTAACT-ATTATGATAGAAAAATATTTTTG
16838922 TAATTATAATAAAAGAGACATTATAATAATTTTAAC
1 TAATTATAATAAAAGAGACATTATAATAATTTTAAC
16838958 CAGTTATAAT
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
58 4 0.05
59 43 0.55
60 2 0.03
61 29 0.37
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (60 bp):
TAATTATAATAAAAGAGACATTATAATAATTTTAACTATTATGATAGAAAAATATTTTTG
Found at i:16839195 original size:27 final size:26
Alignment explanation
Indices: 16839144--16839195 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
16839134 AGAAAAATCT
*
16839144 ATATATTGTTAATTTAAATCATTTTA
1 ATATATTGTTAATCTAAATCATTTTA
16839170 ATATATTGTTTAATCTAATATC-TTTT
1 ATATATTG-TTAATCTAA-ATCATTTT
16839196 CCAGAGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
27 12 0.52
28 3 0.13
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.56
Consensus pattern (26 bp):
ATATATTGTTAATCTAAATCATTTTA
Found at i:16841479 original size:30 final size:30
Alignment explanation
Indices: 16841443--16841516 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
16841433 GCTTAAATAT
*
16841443 TTATTTGAATATAAATTAAAGGA-TAATGAC
1 TTATTTGAATACAAATTAAA-GATTAATGAC
* *
16841473 TTATTTGAATGCAAATTAAAGATTAATGGC
1 TTATTTGAATACAAATTAAAGATTAATGAC
16841503 TTATTTGAATACAA
1 TTATTTGAATACAA
16841517 CAAGAGAGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 2 0.05
30 37 0.95
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (30 bp):
TTATTTGAATACAAATTAAAGATTAATGAC
Found at i:16844269 original size:20 final size:20
Alignment explanation
Indices: 16844244--16844282 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
16844234 TCTCTAAGTG
16844244 TCAAATTTG-CCTATTGACAT
1 TCAAATTTGTCC-ATTGACAT
16844264 TCAAATTTGTCCATTGACA
1 TCAAATTTGTCCATTGACA
16844283 CTAGTTTAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (20 bp):
TCAAATTTGTCCATTGACAT
Found at i:16845165 original size:13 final size:13
Alignment explanation
Indices: 16845125--16845156 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
16845115 TCTAGCTTGA
16845125 TTTT-TTTCT-TT
1 TTTTCTTTCTCTT
16845136 TTTTCTTTCTCTT
1 TTTTCTTTCTCTT
16845149 TTTTCTTT
1 TTTTCTTT
16845157 TGGTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 4 0.21
12 5 0.26
13 10 0.53
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTCTTTCTCTT
Found at i:16851288 original size:15 final size:15
Alignment explanation
Indices: 16851268--16851296 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
16851258 CACCAATGCA
16851268 CATCTTTCATTCATG
1 CATCTTTCATTCATG
16851283 CATCTTTCATTCAT
1 CATCTTTCATTCAT
16851297 TTTTTTTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.28, G:0.03, T:0.48
Consensus pattern (15 bp):
CATCTTTCATTCATG
Found at i:16855922 original size:17 final size:17
Alignment explanation
Indices: 16855900--16855935 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
16855890 GCATGGAAGA
16855900 TAGAATTACATTTAAAT
1 TAGAATTACATTTAAAT
16855917 TAGAATTACATTTAAAT
1 TAGAATTACATTTAAAT
16855934 TA
1 TA
16855936 AAATAAGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (17 bp):
TAGAATTACATTTAAAT
Found at i:16856624 original size:14 final size:15
Alignment explanation
Indices: 16856607--16856635 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16856597 GTTTTTTAGG
16856607 CTTTTT-TTTTTTTT
1 CTTTTTGTTTTTTTT
16856621 CTTTTTGTTTTTTTT
1 CTTTTTGTTTTTTTT
16856636 TTAAGATCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.00, C:0.07, G:0.03, T:0.90
Consensus pattern (15 bp):
CTTTTTGTTTTTTTT
Found at i:16856862 original size:20 final size:20
Alignment explanation
Indices: 16856830--16856891 Score: 83
Period size: 20 Copynumber: 3.2 Consensus size: 20
16856820 TCTATTTTGC
*
16856830 TTTTTGG-TGTTTCCTTTCT
1 TTTTTGGTTTTTTCCTTTCT
*
16856849 TTTTTGGTTTTTTCCTTTTT
1 TTTTTGGTTTTTTCCTTTCT
*
16856869 TTTTTAGTTTTTTCC-TTCT
1 TTTTTGGTTTTTTCCTTTCT
16856888 TTTT
1 TTTT
16856892 CTTCCCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.37
20 24 0.63
ACGTcount: A:0.02, C:0.13, G:0.10, T:0.76
Consensus pattern (20 bp):
TTTTTGGTTTTTTCCTTTCT
Found at i:16858701 original size:16 final size:15
Alignment explanation
Indices: 16858673--16858735 Score: 54
Period size: 18 Copynumber: 3.7 Consensus size: 15
16858663 CATTTGCCTA
*
16858673 TTTTCTTTCTTTTTAT
1 TTTTCTTT-TTTTTCT
16858689 TTTTCATTTTTTTTTCT
1 TTTTC--TTTTTTTTCT
16858706 TTTCTCAATTTTTTTTCT
1 TTT-TC--TTTTTTTTCT
16858724 TCTTTCTTTTTT
1 T-TTTCTTTTTT
16858736 CCTCTTTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
16 11 0.27
17 9 0.22
18 19 0.46
19 2 0.05
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTCTTTTTTTTCT
Found at i:16858717 original size:18 final size:17
Alignment explanation
Indices: 16858682--16858729 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
16858672 ATTTTCTTTC
* *
16858682 TTTTTATTTTTCATTTT
1 TTTTTCTTTTTCAATTT
16858699 TTTTTCTTTTCTCAATTT
1 TTTTTCTTTT-TCAATTT
16858717 TTTTTCTTCTTTC
1 TTTTTCTT-TTTC
16858730 TTTTTTCCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 9 0.33
18 16 0.59
19 2 0.07
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTCTTTTTCAATTT
Found at i:16858735 original size:18 final size:17
Alignment explanation
Indices: 16858673--16858735 Score: 67
Period size: 17 Copynumber: 3.7 Consensus size: 17
16858663 CATTTGCCTA
* *
16858673 TTTTC-TTTCTTTTTAT
1 TTTTCATTTTTTTTTCT
16858689 TTTTCATTTTTTTTTCT
1 TTTTCATTTTTTTTTCT
*
16858706 TTTCTCAATTTTTTTTCT
1 TTT-TCATTTTTTTTTCT
16858724 TCTTTC-TTTTTT
1 T-TTTCATTTTTT
16858736 CCTCTTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
16 5 0.12
17 17 0.43
18 16 0.40
19 2 0.05
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTCATTTTTTTTTCT
Found at i:16865730 original size:4 final size:4
Alignment explanation
Indices: 16865721--16865772 Score: 50
Period size: 4 Copynumber: 12.8 Consensus size: 4
16865711 AAGTATTTAA
* * * * *
16865721 AAAT AAAT AAAT AAAC AAAT GAAC GAAT AAAT AAAT AGAT AAAT AAAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT
16865770 AAA
1 AAA
16865773 CACAAAAAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
4 35 0.90
5 4 0.10
ACGTcount: A:0.71, C:0.04, G:0.06, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:16867178 original size:21 final size:21
Alignment explanation
Indices: 16867154--16867198 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
16867144 TTAGATGCTA
16867154 TAATTAGGAAATAGAATCCTC
1 TAATTAGGAAATAGAATCCTC
* *
16867175 TAATTAGGATATGGAATCCTC
1 TAATTAGGAAATAGAATCCTC
16867196 TAA
1 TAA
16867199 GTAGAGGCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (21 bp):
TAATTAGGAAATAGAATCCTC
Found at i:16867250 original size:31 final size:30
Alignment explanation
Indices: 16867209--16867267 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 30
16867199 GTAGAGGCTC
16867209 AAAAACTTTAAAAACTTTAAGTTAGGAAACA
1 AAAAACTTTAAAAACTTTAA-TTAGGAAACA
*
16867240 AAAAATTTTAAAAACTTTAATTAGGAAA
1 AAAAACTTTAAAAACTTTAATTAGGAAA
16867268 TGGACTCCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 8 0.30
31 19 0.70
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.29
Consensus pattern (30 bp):
AAAAACTTTAAAAACTTTAATTAGGAAACA
Found at i:16867307 original size:52 final size:53
Alignment explanation
Indices: 16867238--16867355 Score: 150
Period size: 52 Copynumber: 2.3 Consensus size: 53
16867228 AGTTAGGAAA
* ** * *
16867238 CAAAAAATTTTAAAAACTTT-AATTAGGAAATGGACTCCTTTAAACAGAGACT
1 CAAAAAACTTTAAAAACTTTAAATTAAAAAATGGACTCCTCTAAACAAAGACT
* * *
16867290 CAAAAAACTTTACAAACTTTAAATTAAAAAATGGACTCCTCTATACAAAGGCT
1 CAAAAAACTTTAAAAACTTTAAATTAAAAAATGGACTCCTCTAAACAAAGACT
16867343 C-AAAAACTTTAAA
1 CAAAAAACTTTAAA
16867356 TTAATTAAGA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
52 29 0.52
53 27 0.48
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.27
Consensus pattern (53 bp):
CAAAAAACTTTAAAAACTTTAAATTAAAAAATGGACTCCTCTAAACAAAGACT
Found at i:16867443 original size:80 final size:80
Alignment explanation
Indices: 16867358--16867523 Score: 192
Period size: 80 Copynumber: 2.1 Consensus size: 80
16867348 ACTTTAAATT
** * *
16867358 AATTAAGAAATGGTTTCTCTATT-TA-GAAGCTTAAAAAACTTTAAATTAAGAAATAGGCTCCTT
1 AATTAAGAAATGGGCTC-CT-TTATATGAAGCTTAAAAAACTTTAAATTAAGAAATAAGCTCCTC
* *
16867421 TATACAATGGCTTAACA
64 TATACAAAGGCTCAACA
* * * *
16867438 AATTAAGAAATGGGCTCCTTTATATGGAGGTTCAACAACTTTAAATTAAGAAATAAGCTCCTCTA
1 AATTAAGAAATGGGCTCCTTTATATGAAGCTTAAAAAACTTTAAATTAAGAAATAAGCTCCTCTA
*
16867503 TATAAAGGCTCAACA
66 TACAAAGGCTCAACA
*
16867518 ACTTAA
1 AATTAA
16867524 AAACTTTAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
78 2 0.03
79 4 0.06
80 66 0.92
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.31
Consensus pattern (80 bp):
AATTAAGAAATGGGCTCCTTTATATGAAGCTTAAAAAACTTTAAATTAAGAAATAAGCTCCTCTA
TACAAAGGCTCAACA
Found at i:16867498 original size:43 final size:43
Alignment explanation
Indices: 16867437--16867521 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
16867427 ATGGCTTAAC
** * ** *
16867437 AAATTAAGAAATGGGCTCCTTTATATGGAGGTTCAACAACTTT
1 AAATTAAGAAATAAGCTCCTCTATATAAAGGCTCAACAACTTT
16867480 AAATTAAGAAATAAGCTCCTCTATATAAAGGCTCAACAACTT
1 AAATTAAGAAATAAGCTCCTCTATATAAAGGCTCAACAACTT
16867522 AAAAACTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.29
Consensus pattern (43 bp):
AAATTAAGAAATAAGCTCCTCTATATAAAGGCTCAACAACTTT
Found at i:16876738 original size:3 final size:3
Alignment explanation
Indices: 16876730--16876756 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
16876720 AAATAAAAAG
16876730 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
16876757 GGTTTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:16876896 original size:3 final size:3
Alignment explanation
Indices: 16876890--16876919 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
16876880 TATAAAAGAT
16876890 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
16876920 AATTTAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:16877327 original size:12 final size:12
Alignment explanation
Indices: 16877243--16877328 Score: 91
Period size: 12 Copynumber: 7.1 Consensus size: 12
16877233 AATTCATAAA
*
16877243 TAAATAAAACCC
1 TAAATGAAACCC
*
16877255 CAAATGAAACCC
1 TAAATGAAACCC
* *
16877267 TAATACGAAACCT
1 TAA-ATGAAACCC
*
16877280 TAAATGAAACCT
1 TAAATGAAACCC
* * *
16877292 TAAAAGGAACTC
1 TAAATGAAACCC
16877304 TAAATGAAACCC
1 TAAATGAAACCC
16877316 TAAATGAAACCC
1 TAAATGAAACCC
16877328 T
1 T
16877329 TGGTAAAATC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
12 50 0.83
13 10 0.17
ACGTcount: A:0.50, C:0.23, G:0.08, T:0.19
Consensus pattern (12 bp):
TAAATGAAACCC
Found at i:16877356 original size:30 final size:30
Alignment explanation
Indices: 16877322--16877399 Score: 111
Period size: 30 Copynumber: 2.6 Consensus size: 30
16877312 ACCCTAAATG
* *
16877322 AAACCCTTGGTAAAATCCTAGTGGAACCTT
1 AAACCCTTAGTAAAATCCTAATGGAACCTT
16877352 AAACCCTTAGTAAAATCCTAATGGAACCTT
1 AAACCCTTAGTAAAATCCTAATGGAACCTT
* * *
16877382 AAACTCTAAGTGAAATCC
1 AAACCCTTAGTAAAATCC
16877400 GAAATCCTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (30 bp):
AAACCCTTAGTAAAATCCTAATGGAACCTT
Found at i:16877433 original size:38 final size:38
Alignment explanation
Indices: 16877364--16877485 Score: 113
Period size: 38 Copynumber: 3.2 Consensus size: 38
16877354 ACCCTTAGTA
* * *
16877364 AAATCCTA-ATGGAACCTTAAACTCTAAGTGAAATCCG
1 AAATCCTAGATGAAACCCTAAACTTTAAGTGAAATCCG
* * *
16877401 AAATCCTAGGTGAAACCCTAAACTTTAGGTGAAA-CCTT
1 AAATCCTAGATGAAACCCTAAACTTTAAGTGAAATCC-G
* * * * *
16877439 AAACCCTATATGAAATCCTAAACCTTTAAGTAAAATCTG
1 AAATCCTAGATGAAACCCTAAA-CTTTAAGTGAAATCCG
16877478 AAATCCTA
1 AAATCCTA
16877486 ACCAAAACCC
Statistics
Matches: 66, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
37 10 0.15
38 38 0.58
39 17 0.26
40 1 0.02
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.26
Consensus pattern (38 bp):
AAATCCTAGATGAAACCCTAAACTTTAAGTGAAATCCG
Found at i:16879527 original size:17 final size:17
Alignment explanation
Indices: 16879487--16879527 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
16879477 ATGGATAAAT
16879487 AAATAAATAAATAAAAC
1 AAATAAATAAATAAAAC
* * *
16879504 TATTAAATAAATAAAGC
1 AAATAAATAAATAAAAC
16879521 AAATAAA
1 AAATAAA
16879528 ATTTAAAAAA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (17 bp):
AAATAAATAAATAAAAC
Found at i:16881014 original size:43 final size:42
Alignment explanation
Indices: 16880917--16881161 Score: 264
Period size: 43 Copynumber: 5.7 Consensus size: 42
16880907 CTATATACAA
* *
16880917 AGGCTAAACAACTTTAGAAAATAAAAAAATAGG-CTCTTCTATTTAG
1 AGGCTAAACAACTTT--AAAAT-AAGAAAT-GGACTCCTCTA-TTAG
* *
16880963 AGACTAAACAACTTTAAAATAAGAAATGTG-GTCCTCTATATAG
1 AGGCTAAACAACTTTAAAATAAGAAATG-GACTCCTCTAT-TAG
* * *
16881006 AGGTTAAACAACTTTAAAGTAAGAAATAGG-CTCCTCTATTCG
1 AGGCTAAACAACTTTAAAATAAGAAAT-GGACTCCTCTATTAG
*
16881048 AAGGCTAAATAACTTTAAAATAAGAAATGGACTCCTCTATTCAG
1 -AGGCTAAACAACTTTAAAATAAGAAATGGACTCCTCTATT-AG
* * *
16881092 AGGCTAAATAACTTTAAAATAAGAAATGGACTCCTTTA-TAA
1 AGGCTAAACAACTTTAAAATAAGAAATGGACTCCTCTATTAG
*
16881133 AGGCTAAACAACTTTAAAACAAGAAATGG
1 AGGCTAAACAACTTTAAAATAAGAAATGG
16881162 GTTCCTTTAA
Statistics
Matches: 176, Mismatches: 17, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
41 28 0.16
42 7 0.04
43 120 0.68
44 7 0.04
46 14 0.08
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.27
Consensus pattern (42 bp):
AGGCTAAACAACTTTAAAATAAGAAATGGACTCCTCTATTAG
Found at i:16891516 original size:17 final size:18
Alignment explanation
Indices: 16891482--16891519 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
16891472 CAATATACAT
* *
16891482 AAAATAAAATATATTAAC
1 AAAATAAAATACAATAAC
16891500 AAAAT-AAATACAATAAC
1 AAAATAAAATACAATAAC
16891517 AAA
1 AAA
16891520 CATGGTACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAATAAAATACAATAAC
Found at i:16895934 original size:157 final size:157
Alignment explanation
Indices: 16895648--16895960 Score: 574
Period size: 157 Copynumber: 2.0 Consensus size: 157
16895638 ACTCGGGTGC
*
16895648 AGAGCTAATGTTATATATATGCAAATGAATGATAGATATGATAAATAAGTAAACAAATAAAAATA
1 AGAGCTAATGTTATATATATGCAAATGAATGACAGATATGATAAATAAGTAAACAAATAAAAATA
16895713 TAGCCAAGAAGAAAACTTAAAAAAAATTTAATTTATTAAGGCTTGGATAACAAGAATCATTTACT
66 TAGCCAAGAAGAAAACTTAAAAAAAATTTAATTTATTAAGGCTTGGATAACAAGAATCATTTACT
16895778 TACCTAACTTTTAATTATCGCCAATGT
131 TACCTAACTTTTAATTATCGCCAATGT
*
16895805 AGAGCTAATGTTATATATATGTAAATGAATGACAGATATGATAAATAAGTAAACAAATAAAAATA
1 AGAGCTAATGTTATATATATGCAAATGAATGACAGATATGATAAATAAGTAAACAAATAAAAATA
*
16895870 TGGCCAAGAAGAAAACTTAAAAAAAA-TTAATTTATTAAGGCTTGGATAACAAGAAATCATTTAC
66 TAGCCAAGAAGAAAACTTAAAAAAAATTTAATTTATTAAGGCTTGGATAACAAG-AATCATTTAC
*
16895934 TTGCCTAACTTTTAATTATCGCCAATG
130 TTACCTAACTTTTAATTATCGCCAATG
16895961 GAGTCACCAT
Statistics
Matches: 151, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
156 27 0.18
157 124 0.82
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.30
Consensus pattern (157 bp):
AGAGCTAATGTTATATATATGCAAATGAATGACAGATATGATAAATAAGTAAACAAATAAAAATA
TAGCCAAGAAGAAAACTTAAAAAAAATTTAATTTATTAAGGCTTGGATAACAAGAATCATTTACT
TACCTAACTTTTAATTATCGCCAATGT
Found at i:16896827 original size:4 final size:4
Alignment explanation
Indices: 16896818--16896856 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
16896808 AAGTATTTAA
* * *
16896818 AAAT AAAT AAAT AATT GAAT AAAT AAAC AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
16896857 ATGAACAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:16897653 original size:15 final size:15
Alignment explanation
Indices: 16897614--16897653 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
16897604 ACTGAATCAA
*
16897614 TGATTTTTCTTTGATT
1 TGATTTTT-TATGATT
*
16897630 TGATCTTTTATGATT
1 TGATTTTTTATGATT
16897645 TGATTTTTT
1 TGATTTTTT
16897654 TTATTTTCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.15, C:0.05, G:0.12, T:0.68
Consensus pattern (15 bp):
TGATTTTTTATGATT
Found at i:16904842 original size:14 final size:13
Alignment explanation
Indices: 16904819--16904857 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
16904809 TCATGAAGTT
*
16904819 ATTTATTAAAAATA
1 ATTTAATAAAAA-A
16904833 ATTTAAT-AAAAA
1 ATTTAATAAAAAA
16904845 ATTTAATAAAAAA
1 ATTTAATAAAAAA
16904858 TTAAATCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 8 0.35
13 9 0.39
14 6 0.26
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATTTAATAAAAAA
Found at i:16904846 original size:15 final size:14
Alignment explanation
Indices: 16904819--16904856 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
16904809 TCATGAAGTT
*
16904819 ATTTATTAAAAATA
1 ATTTAATAAAAATA
16904833 ATTTAAT-AAAA-A
1 ATTTAATAAAAATA
16904845 ATTTAATAAAAA
1 ATTTAATAAAAA
16904857 ATTAAATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 8 0.36
13 8 0.36
14 6 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATTTAATAAAAATA
Found at i:16904861 original size:11 final size:12
Alignment explanation
Indices: 16904827--16904859 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
16904817 TTATTTATTA
16904827 AAAATAATTTAAT
1 AAAA-AATTTAAT
16904840 AAAAAATTTAAT
1 AAAAAATTTAAT
16904852 AAAAAATT
1 AAAAAATT
16904860 AAATCAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAAAATTTAAT
Found at i:16905634 original size:14 final size:14
Alignment explanation
Indices: 16905615--16905655 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
16905605 TTTGTTAGAT
16905615 TTTAAATTAAAAAA
1 TTTAAATTAAAAAA
*
16905629 TTTAAATTTAAAAA
1 TTTAAATTAAAAAA
16905643 --TAAATTTAAAAAA
1 TTTAAA-TTAAAAAA
16905656 AGATAGAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 4 0.17
13 7 0.29
14 13 0.54
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TTTAAATTAAAAAA
Found at i:16905648 original size:12 final size:13
Alignment explanation
Indices: 16905616--16905654 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
16905606 TTGTTAGATT
*
16905616 TTAAATTAAAAAA
1 TTAAATTTAAAAA
16905629 TTTAAATTTAAAAA
1 -TTAAATTTAAAAA
16905643 -TAAATTTAAAAA
1 TTAAATTTAAAAA
16905655 AAGATAGAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 12 0.50
14 12 0.50
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TTAAATTTAAAAA
Found at i:16907712 original size:11 final size:12
Alignment explanation
Indices: 16907695--16907752 Score: 52
Period size: 11 Copynumber: 5.0 Consensus size: 12
16907685 AAAAAAAGGA
16907695 AAAATAATAAAT
1 AAAATAATAAAT
*
16907707 -AAATAAAAAGAAT
1 AAAAT-AATA-AAT
16907720 AAAA-AATAAAT
1 AAAATAATAAAT
*
16907731 GAAA-AAT-AAT
1 AAAATAATAAAT
16907741 AAAATAATAAAT
1 AAAATAATAAAT
16907753 GATGATAGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
10 6 0.16
11 16 0.43
12 9 0.24
13 3 0.08
14 3 0.08
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (12 bp):
AAAATAATAAAT
Found at i:16907720 original size:17 final size:16
Alignment explanation
Indices: 16907694--16907729 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
16907684 TAAAAAAAGG
*
16907694 AAAAATAATAAATAAAT
1 AAAAAGAATAAA-AAAT
16907711 AAAAAGAATAAAAAAT
1 AAAAAGAATAAAAAAT
16907727 AAA
1 AAA
16907730 TGAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (16 bp):
AAAAAGAATAAAAAAT
Found at i:16907727 original size:24 final size:22
Alignment explanation
Indices: 16907683--16907736 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 22
16907673 AAATATGTGT
* *
16907683 ATAAAAAAAGGAAAAATAATAA
1 ATAAAAAAAAGAAAAAAAATAA
16907705 ATAAATAAAAAGAATAAAAAATAA
1 ATAAA-AAAAAGAA-AAAAAATAA
*
16907729 ATGAAAAA
1 ATAAAAAA
16907737 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.19
23 10 0.37
24 12 0.44
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (22 bp):
ATAAAAAAAAGAAAAAAAATAA
Found at i:16907753 original size:22 final size:21
Alignment explanation
Indices: 16907697--16907754 Score: 82
Period size: 20 Copynumber: 2.8 Consensus size: 21
16907687 AAAAAGGAAA
*
16907697 AATAATAAATAAAT-AAAAAG
1 AATAAAAAATAAATGAAAAAG
*
16907717 AATAAAAAATAAATGAAAAAT
1 AATAAAAAATAAATGAAAAAG
16907738 AATAAAATAATAAATGA
1 AATAAAA-AATAAATGA
16907755 TGATAGTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.38
21 12 0.35
22 9 0.26
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (21 bp):
AATAAAAAATAAATGAAAAAG
Found at i:16908193 original size:15 final size:15
Alignment explanation
Indices: 16908173--16908211 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
16908163 GCTTTCTTAT
*
16908173 ATAAAAATTATAATA
1 ATAAAAATAATAATA
16908188 ATAAAAATAATAAT-
1 ATAAAAATAATAATA
*
16908202 ACAAAAATAA
1 ATAAAAATAA
16908212 AATTGAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAAAATAATAATA
Found at i:16912573 original size:21 final size:21
Alignment explanation
Indices: 16912543--16912584 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
16912533 AACCTTTTAC
*
16912543 ATTATATTTTGTATATATTAT
1 ATTATATTTTATATATATTAT
* *
16912564 ATTATTTTTTATGTATATTAT
1 ATTATATTTTATATATATTAT
16912585 GTTTACTAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (21 bp):
ATTATATTTTATATATATTAT
Found at i:16915103 original size:16 final size:16
Alignment explanation
Indices: 16915084--16915129 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
16915074 AAAAATGATG
16915084 AAAAGAAAAAGAAAAA
1 AAAAGAAAAAGAAAAA
* *
16915100 AAAAGAGAAATAAAAA
1 AAAAGAAAAAGAAAAA
*
16915116 AAATGAAAAAGAAA
1 AAAAGAAAAAGAAA
16915130 TTAATGGGAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (16 bp):
AAAAGAAAAAGAAAAA
Found at i:16917129 original size:66 final size:66
Alignment explanation
Indices: 16917033--16917198 Score: 174
Period size: 67 Copynumber: 2.5 Consensus size: 66
16917023 GGTTCAATCT
* * * * * * * *
16917033 AAATCA-TTTATTATTTTGACTTGCGATTCAATCTC-GATCACTTATTTTTTATCTTAATTTGGT
1 AAATCATTTTATTTTTTTGACTCGAGGTTCAATCTCAG-TCACTCATTTTTTATCTCAACTTAGT
*
16917096 TT
65 TC
* * *
16917098 AGATCATTTTATTTTTTTGACTCGTGGTTCAATCCTCAGTCACTCATTTTTTATCTCAGCTTAGT
1 AAATCATTTTATTTTTTTGACTCGAGGTTCAAT-CTCAGTCACTCATTTTTTATCTCAACTTAGT
16917163 TC
65 TC
* *
16917165 AAATCATATTATTTTTTTAACTCGAGGTTCAATC
1 AAATCATTTTATTTTTTTGACTCGAGGTTCAATC
16917199 CTAATCACTT
Statistics
Matches: 83, Mismatches: 15, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
65 5 0.06
66 23 0.28
67 54 0.65
68 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.10, T:0.49
Consensus pattern (66 bp):
AAATCATTTTATTTTTTTGACTCGAGGTTCAATCTCAGTCACTCATTTTTTATCTCAACTTAGTT
C
Found at i:16917177 original size:67 final size:67
Alignment explanation
Indices: 16917033--16917249 Score: 199
Period size: 66 Copynumber: 3.3 Consensus size: 67
16917023 GGTTCAATCT
* * * * * ** *
16917033 AAATCA-TTTATTATTTTGACTTGCGATTCAAT-CTC-GATCACTTATTTTTTATCTTAATTTGG
1 AAATCATTTTATTTTTTTGACTCGAGGTTCAATCCTCAG-TCACTTATTTTTTATCTCAGCTTAG
*
16917095 TTT
65 TTC
* * *
16917098 AGATCATTTTATTTTTTTGACTCGTGGTTCAATCCTCAGTCACTCATTTTTTATCTCAGCTTAGT
1 AAATCATTTTATTTTTTTGACTCGAGGTTCAATCCTCAGTCACTTATTTTTTATCTCAGCTTAGT
16917163 TC
66 TC
* * * * ** * *
16917165 AAATCATATTATTTTTTTAACTCGAGGTTCAATCCT-AATCACTTGTTTTCAATCTCGGCTTAGC
1 AAATCATTTTATTTTTTTGACTCGAGGTTCAATCCTCAGTCACTTATTTTTTATCTCAGCTTAGT
16917229 TC
66 TC
* *
16917231 ATATCATTTTAATTTTTTG
1 AAATCATTTTATTTTTTTG
16917250 GCTTATGACT
Statistics
Matches: 123, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
65 5 0.04
66 60 0.49
67 57 0.46
68 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.49
Consensus pattern (67 bp):
AAATCATTTTATTTTTTTGACTCGAGGTTCAATCCTCAGTCACTTATTTTTTATCTCAGCTTAGT
TC
Found at i:16918213 original size:14 final size:14
Alignment explanation
Indices: 16918196--16918233 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
16918186 CCATTTTTTG
16918196 TTTTGATTTTATTT
1 TTTTGATTTTATTT
16918210 TTTTGATTTTATTT
1 TTTTGATTTTATTT
16918224 TGTTT-ATTTT
1 T-TTTGATTTT
16918234 TTTACTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 20 0.87
15 3 0.13
ACGTcount: A:0.13, C:0.00, G:0.08, T:0.79
Consensus pattern (14 bp):
TTTTGATTTTATTT
Found at i:16924024 original size:10 final size:10
Alignment explanation
Indices: 16924009--16924168 Score: 93
Period size: 10 Copynumber: 16.2 Consensus size: 10
16923999 TTTTTTTAAA
16924009 TTCTAAAAAT
1 TTCTAAAAAT
16924019 TTCTAAAAGA-
1 TTCTAAAA-AT
*
16924029 TTCTTAAAAT
1 TTCTAAAAAT
16924039 TTCTAAAAAAT
1 TTCT-AAAAAT
* *
16924050 TTTTGAATAA-
1 TTCT-AAAAAT
*
16924060 TTCCAAAAAT
1 TTCTAAAAAT
*
16924070 TTTTGAAAAA-
1 TTCT-AAAAAT
16924080 TTCTAACAAAT
1 TTCTAA-AAAT
*
16924091 TTTTAAAAA-
1 TTCTAAAAAT
*
16924100 TTATAAAAAT
1 TTCTAAAAAT
16924110 TTC-AAAAA-
1 TTCTAAAAAT
16924118 TTCTAAAACAT
1 TTCTAAAA-AT
** *
16924129 TT-TTTAAAG
1 TTCTAAAAAT
*
16924138 TTATAAAAAT
1 TTCTAAAAAT
*
16924148 TTCAAAAAAT
1 TTCTAAAAAT
*
16924158 TT-TAAACAT
1 TTCTAAAAAT
16924167 TT
1 TT
16924169 TTGAAAAACT
Statistics
Matches: 114, Mismatches: 24, Indels: 25
0.70 0.15 0.15
Matches are distributed among these distances:
8 3 0.03
9 34 0.30
10 52 0.46
11 25 0.22
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.40
Consensus pattern (10 bp):
TTCTAAAAAT
Found at i:16924131 original size:38 final size:39
Alignment explanation
Indices: 16924034--16924176 Score: 141
Period size: 38 Copynumber: 3.7 Consensus size: 39
16924024 AAAGATTCTT
* * * ** *
16924034 AAAATTTCTAAAAAATTTTTGAATAATTCCAAAAATTTTTG
1 AAAAATTCTAAAACATTTTTGAAAAATTATAAAAA--TTTC
16924075 AAAAATTCTAACAA-ATTTTT-AAAAATTATAAAAATTTC
1 AAAAATTCTAA-AACATTTTTGAAAAATTATAAAAATTTC
* *
16924113 AAAAATTCTAAAACATTTTT-TAAAGTTATAAAAATTTC
1 AAAAATTCTAAAACATTTTTGAAAAATTATAAAAATTTC
*
16924151 AAAAAATT-TTAAACATTTTTGAAAAA
1 -AAAAATTCTAAAACATTTTTGAAAAA
16924177 CTCTAAAAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
37 2 0.02
38 47 0.53
39 10 0.11
40 11 0.12
41 16 0.18
42 2 0.02
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.38
Consensus pattern (39 bp):
AAAAATTCTAAAACATTTTTGAAAAATTATAAAAATTTC
Done.