genome.fa.s453.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168278.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_506, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24590

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1061--1113	26	2.0	26	88	0	79	28	20	22	28	1.99
1454--1497	18	2.3	19	84	15	63	9	9	2	79	1.02
1457--1509	22	2.4	22	84	12	72	9	5	3	81	0.98
1464--1502	11	3.7	10	80	12	51	5	7	0	87	0.68
1574--1665	13	6.7	14	71	19	52	30	0	2	67	1.03
1596--1668	25	3.1	23	77	13	78	30	0	0	69	0.88
1598--1696	22	4.3	22	74	15	85	30	1	1	67	1.04
1658--1723	28	2.5	24	81	15	78	27	7	1	63	1.30
2651--2719	15	4.6	14	72	16	50	13	7	1	78	1.02
2664--2726	10	6.7	9	81	13	74	12	3	1	82	0.86
2664--2720	18	2.9	20	82	10	64	12	3	1	82	0.87
2662--2726	29	2.3	28	84	10	87	12	4	1	81	0.91
2672--2722	18	2.9	18	85	2	68	11	3	1	82	0.89
2664--2741	15	4.8	16	75	17	63	14	5	1	79	0.96
2763--3100	60	5.7	60	89	3	508	44	7	13	34	1.73
2763--3100	119	2.9	118	89	3	545	44	7	13	34	1.73
6280--6305	11	2.4	11	100	0	52	88	0	11	0	0.52
7567--7659	41	2.3	40	89	9	136	22	16	22	38	1.92
7644--7672	12	2.3	13	94	5	51	34	6	27	31	1.83
7603--7713	53	2.1	54	96	1	206	25	15	25	34	1.95
7656--7875	42	5.3	42	89	4	329	23	18	23	35	1.96
7657--7875	83	2.6	83	89	2	323	23	18	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7883--7911	11	2.6	11	100	0	58	93	6	0	0	0.36
8194--8301	11	9.8	12	68	17	56	27	1	2	67	1.15
8178--8283	18	5.8	18	75	16	78	29	0	2	66	1.12
8199--8273	31	2.5	30	85	8	98	26	0	2	70	1.00
8264--8330	28	2.5	26	85	9	89	25	8	1	64	1.31
9596--9648	26	2.0	26	92	0	88	30	20	24	24	1.99
11367--11420	27	2.0	26	89	3	81	31	20	22	25	1.98
13145--13198	26	2.0	27	89	3	83	27	18	25	27	1.98
14883--14934	26	2.0	25	85	3	68	30	19	21	28	1.97
13950--19193	872	6.0	865	79	10	5013	25	23	24	26	2.00
16630--16682	26	2.0	26	92	0	88	30	20	22	26	1.98
18397--18454	25	2.3	26	84	3	82	22	15	31	31	1.95
20801--20850	26	2.0	26	88	4	75	32	20	22	26	1.98
23006--23063	26	2.3	25	82	5	73	22	6	18	51	1.70
23476--23546	24	3.0	24	86	12	103	29	16	26	26	1.97

Tables:   1

The End!