Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168279.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_507, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24581
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Found at i:1166 original size:26 final size:26
Alignment explanation
Indices: 1136--1186 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1126 TGACTTAGGC
1136 ATACGGAATTCATTCCCAGTCTAAGT
1 ATACGGAATTCATTCCCAGTCTAAGT
* *
1162 ATACGGAGTTCATTCCCAGTGTAAG
1 ATACGGAATTCATTCCCAGTCTAAG
1187 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAATTCATTCCCAGTCTAAGT
Found at i:1970 original size:785 final size:785
Alignment explanation
Indices: 456--2023 Score: 2363
Period size: 785 Copynumber: 2.0 Consensus size: 785
446 GCACATGATG
456 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTC
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTC
** *
521 ACACCCCCTTAAAGAGTGTTTGAGATTTTATAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAA
66 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
586 ATGGGGACACTTTTTTCAAATGCTGACAAAATCCTGTACACTTCGATTTTTTAGCTGAATGTTTT
131 ATGGGGACACTTTTTTCAAATGCTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATGTTTT
651 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCTGAAA
196 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCTGAAA
716 AAATTTAAAAAAATCTCGAACCATAAAAAATGTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
261 AAATTTAAAAAAATCTCGAACCATAAAAAATGTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
781 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGG
326 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGG
* * * *
846 CTTTGGCATGGCAAAAATATGAAGATGTGCCTAAACGCACCTACCACCTTATCGATCCATGGCTT
391 CATTGGCATGGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTT
** * ** *
911 ACTTATTCCACCTCTCTGGTTGACATAATGCCCGCCCGCCCACTCGTTTCATCAGTTGGCTTCGG
456 ACGCATCCCACCTCTCTGGCAGACATAATGCCCGCCCGCCCACTCGTTTCATCAGTTGGCTTAGG
* * * * * *
976 CATACTGAGTTCCTTCCCAGTCTAAGATTGAACCGGACCGAGGGTTATGGCAGCAAGATCGATAG
521 CATACTGAGTTCATTCCCAGACTAAGATTGAACCGGACCAAGGATTATGGCAGCAAGATCAACAG
* * * * * *
1041 CACGCAGGGGGGGACCCGACCGACCCCCGGCTTATGCATCCTGCCCCTCTGGTCGGCTGAGTGCC
586 CACGCAGGGAGGGACCCGACCGACCCCCAGCTTATGCAACCTGCCCCTCTAGCCGGCTGAGCGCC
* * *
1106 CGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGTATACGGAGT
651 CGCATGCTCGTTTCATGAGTTGACTTAGGCATACGGAATTCATTCCCAATCTAAGCATACGGAGT
* * *
1171 TCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTT-ACAGTGCACATGCTGGGCTCGGGCATGT
716 TCATTCCCAGTGTAAGATCAGACCAGACAGAGGGTTGACAGTGCACATGCTGGGCTCGGGCATGT
1235 GCTAA
781 GCTAA
*
1240 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTC
** *
1305 GTACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAA
66 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
1370 ATGGGGACACTTTTTTCAAATGGTCACAGAATCCTATACACTTCGAGTTTTTAGGTGAATTTTTT
131 ATGGGGACACTTTTTTCAAATGCTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATGTTTT
* * * *
1435 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTCTTTCT-AAA
196 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCTGAAA
* * * *
1499 AATTTTTTTAAAAAATCTCGAACTC-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
261 AA--ATTTAAAAAAATCTCGAAC-CATAAAAAATGTCAAAAATCATGAAAAATAGAAAACGAGTC
*
1563 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
323 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAA
1628 TGGCATTGGCATGGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACAC-TATCGATCCACG
388 TGGCATTGGCATGGCAAAAATATAAAGATGTGCCTAAACCCACCTACCAC-CTTATCGATCCACG
* * * * * * *
1692 GCTTGCGCATCCCGCCTCTCTGGCCAG-CATAGTGCCTGCCTGCCCGCTCGTTTCGTCAGTTGGC
452 GCTTACGCATCCCACCTCTCTGG-CAGACATAATGCCCGCCCGCCCACTCGTTTCATCAGTTGGC
* **
1756 TTAGGCATACTGAGTTCATTCCCAGACTAAGATTGGACCGGACCAAGGATTATGGCAGCTGGATC
516 TTAGGCATACTGAGTTCATTCCCAGACTAAGATTGAACCGGACCAAGGATTATGGCAGCAAGATC
* * ** * * *
1821 AACAGTACGTAGGGAGGGACTTGGCCGATCCCCAGCTTTTGCAACCTGCCCCTCTAGCCGGCTGA
581 AACAGCACGCAGGGAGGGACCCGACCGACCCCCAGCTTATGCAACCTGCCCCTCTAGCCGGCTGA
** * *
1886 GCGCCCGCATGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAT
646 GCGCCCGCATGCTCGTTTCATGAGTTGACTTAGGCATACGGAATTCATTCCCAATCTAAGCATAC
* * ***
1951 GGAGTTCATTCCTAGTGTAAGATCAGACCGGACAGAGGGTTGTGGGTGCACATGCTGGGCTCGGG
711 GGAGTTCATTCCCAGTGTAAGATCAGACCAGACAGAGGGTTGACAGTGCACATGCTGGGCTCGGG
2016 CATGTGCT
776 CATGTGCT
2024 GGTAACACAT
Statistics
Matches: 701, Mismatches: 77, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
783 5 0.01
784 238 0.34
785 427 0.61
786 31 0.04
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (785 bp):
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGCTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATGTTTT
TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCTGAAA
AAATTTAAAAAAATCTCGAACCATAAAAAATGTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGG
CATTGGCATGGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTT
ACGCATCCCACCTCTCTGGCAGACATAATGCCCGCCCGCCCACTCGTTTCATCAGTTGGCTTAGG
CATACTGAGTTCATTCCCAGACTAAGATTGAACCGGACCAAGGATTATGGCAGCAAGATCAACAG
CACGCAGGGAGGGACCCGACCGACCCCCAGCTTATGCAACCTGCCCCTCTAGCCGGCTGAGCGCC
CGCATGCTCGTTTCATGAGTTGACTTAGGCATACGGAATTCATTCCCAATCTAAGCATACGGAGT
TCATTCCCAGTGTAAGATCAGACCAGACAGAGGGTTGACAGTGCACATGCTGGGCTCGGGCATGT
GCTAA
Found at i:2839 original size:26 final size:26
Alignment explanation
Indices: 2809--2861 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2799 GTTGACTTAG
2809 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
2835 GCATATGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2861 G
1 G
2862 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2967 original size:890 final size:891
Alignment explanation
Indices: 1240--3112 Score: 3090
Period size: 890 Copynumber: 2.1 Consensus size: 891
1230 CATGTGCTAA
*
1240 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * *
1305 GTACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAA
66 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1370 ATGGGGACACTTTTTTCAAATGGTCACAGAATCCTATACACTTCGAGTTTTTAGGTGAATTTTTT
131 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTT
*
1435 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTCTTTCTAAAA
196 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTAAAA
1500 ATTTTTTTAAAAAATCTCGAACTCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
261 ATTTTTTTAAAAAATCTCGAACTCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
1565 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
326 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1630 GCATTGGCATGGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCT
391 GCATTGGCATGGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCT
* * * *
1695 TGCGCATCCCGCCTCTCTGGCCAGCATAGTGCCTGCCTGCCCGCTCGTTTCGTCAGTTGGCTTAG
456 TGCGCATCCCGCCACTCTGGCCAGCATAGTGCCCGCCTGCCCGCTCATTTCATCAGTTGGCTTAG
* * *
1760 GCATACTGAGTTCATTCCCAGACTAAGATTGGACCGGACCAAGGATTATGGCAGCTGGATCAACA
521 GCATACGGAGTTCATTCCCAGAATAAGATTGGACCAGACCAAGGATTATGGCAGCTGGATCAACA
* * * *
1825 GTACGTAGGGAGGGACTTGGCCGATCCCCAGCTTTTGCAACCTGCCCCTCTAGCCGGCTGAGCGC
586 GCACGTAGGGAGGGACCTGGCCGATCCCCAGCTTCTGCAACCTGCCCCTCTAGCCGGCTAAGCGC
* **
1890 CCGCATGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAG
651 CCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAG
* *
1955 TTCATTCCTAGTGTAAGATCAGACCGGACAGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATG
716 TTCATTCCTAGTGTAAGATCAGACCGGACAGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATA
* *
2020 TGCTGGTAACACATTTCTTTTTCACCCAGGGCACCATCGTCGGAGCATCGCCGGGTAACCTAACC
781 TGCTGGTAACACATTTCTTTTTCACCCAGGGCACCATCGCCAGAGCATCGCCGGGTAACCTAACC
* *
2085 GACGGCATTGGGGTT-TCGGAGATTGGGGGG-TCTGCGCATATGATG
846 GACGGCATTGGGGTTCT-GAAGATTGGGGGGTTCTGCGCACATGATG
* *
2130 TGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTC
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** *
2195 ACACCCCCTTAAAGAGTGTTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
66 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
2260 ATGGGGACAGTTTTTTCAAATGGTGACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTT
131 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTT
*
2325 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAA
196 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTAAAA
*
2390 TTTTTTTTAAAAAAT-TCGGAACTCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGCA-TC
261 ATTTTTTTAAAAAATCTC-GAACTCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG-AGTC
*
2453 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAACAA
324 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
2518 TGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCGCCTACCACACTATCGATCCACGG
389 TGGCATTGGCATGGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGG
* * *
2583 CTTGCGCATCCCGCCACTCTGGCCGGCATAGTGCCCG-CTCGCCTGCTCATTTCATCGGTTGGCT
454 CTTGCGCATCCCGCCACTCTGGCCAGCATAGTGCCCGCCT-GCCCGCTCATTTCATCAGTTGGCT
* * * *
2647 TAGGCATACGGAGTTCATTCCCAGAATAAGATTGGATCAGATCGAGGGTTATGGCAGCTGGATCA
518 TAGGCATACGGAGTTCATTCCCAGAATAAGATTGGACCAGACCAAGGATTATGGCAGCTGGATCA
* * * *
2712 GCAGCACGTAGGGAGGGACCTGGTCGATCCCCGGCTTCTGCAACCTGCCCCTCTGGCCGGCTAAG
583 ACAGCACGTAGGGAGGGACCTGGCCGATCCCCAGCTTCTGCAACCTGCCCCTCTAGCCGGCTAAG
*
2777 CGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
648 CGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATG
*
2842 GAGTTCATTCCTAGTGTAAGATCAGACCGGATAGAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
713 GAGTTCATTCCTAGTGTAAGATCAGACCGGACAGAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
* * *
2907 ATATGCTGGTAACACATTTTTTTTTCGCCCAGGGCACCATCGCCAGAGCATCGTCGGGTAACCTA
778 ATATGCTGGTAACACATTTCTTTTTCACCCAGGGCACCATCGCCAGAGCATCGCCGGGTAACCTA
* * *
2972 ACCGGCGGCATTGGGGTTCTGAAGATTGGGGGGTTGTGTGCACATGATG
843 ACCGACGGCATTGGGGTTCTGAAGATTGGGGGGTTCTGCGCACATGATG
* *
3021 TGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTC
1 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
3086 ACACCTCCTTAAAGAGCATTTGAGATT
66 ACACCCCCTTAAAGAGCATTTGAGATT
3113 AAACTTCACA
Statistics
Matches: 909, Mismatches: 69, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
889 4 0.00
890 806 0.89
891 99 0.11
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (891 bp):
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTAAAA
ATTTTTTTAAAAAATCTCGAACTCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCT
TGCGCATCCCGCCACTCTGGCCAGCATAGTGCCCGCCTGCCCGCTCATTTCATCAGTTGGCTTAG
GCATACGGAGTTCATTCCCAGAATAAGATTGGACCAGACCAAGGATTATGGCAGCTGGATCAACA
GCACGTAGGGAGGGACCTGGCCGATCCCCAGCTTCTGCAACCTGCCCCTCTAGCCGGCTAAGCGC
CCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAG
TTCATTCCTAGTGTAAGATCAGACCGGACAGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATA
TGCTGGTAACACATTTCTTTTTCACCCAGGGCACCATCGCCAGAGCATCGCCGGGTAACCTAACC
GACGGCATTGGGGTTCTGAAGATTGGGGGGTTCTGCGCACATGATG
Found at i:4401 original size:26 final size:26
Alignment explanation
Indices: 4357--4406 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
4347 GACTTAGGCA
* **
4357 TACGGAGTTCATTTGCAGTCTAAGCT
1 TACGAAGTTCATTCCCAGTCTAAGCT
*
4383 TACGAAGTTCATTCCCAGTGTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
4407 ATCGGACCGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:5274 original size:26 final size:26
Alignment explanation
Indices: 5238--5290 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5228 GTTAACTTAG
5238 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5264 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5290 G
1 G
5291 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6164 original size:26 final size:26
Alignment explanation
Indices: 6135--6187 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6125 GTTGACTTAG
*
6135 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
6161 GCATACGGAGTTCTTTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6187 G
1 G
6188 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6777 original size:897 final size:895
Alignment explanation
Indices: 3113--8681 Score: 6933
Period size: 897 Copynumber: 6.3 Consensus size: 895
3103 ATTTGAGATT
*
3113 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCG
1 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* ** *
3178 TGGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCGTGGCTTGCGCAACC
66 TGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
3243 TGCCACTCTGGCCGGCGTAGTGCCCGCCTGCCCGCTCGTTTCATCAGTTGGCTTAGGCATATGGA
131 CGCCTCTCTTGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
* * * * * * * * * * *
3308 GTTCATTCCTAGGCTAAGATTGAACCAGATTGAGTGTTATGGTAGCAGGATCGGCAACATGCAGG
196 GTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGG
** * ** * ** *
3373 GGGGACTTGACTGATCCCCAGCTTGTGCATCCTGCTGCACTGGCTGGCTGAGTGCCCGCACGCTC
261 GGGGACCCGACTGAACCCTGGCTTGCGCATCCTGCCCCACTGGCTGGCTGAGCGCCCGCACGCTC
*
3438 GTTTCGTGGGTTGACTTAGGCATACAGG-GTTCATTCCCAGTCTAAGCATATC-GAGTTCATTCC
326 ATTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGCATA-CGGAGTTCATTCC
* * * * *
3501 CAGTGTAAGATCAGACCGGACCAAGGGTTGTGGGTGCACATGCTGGACTCGGGCATGTGCTGGTG
389 CAGTGTAAGATCGGATCGGACCGAGGGTTGTAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* ** * ** * **
3566 CCGCATTTATTTTCGCCCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTAATTGGCAACATT
454 CCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* *
3631 GGGGTTCCTACGATTGTGGGGCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTG
519 GGGGTTCCGACGATTG-GGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
3696 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC-CTACCCCCTTATAGAGTATT
583 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCCTTAAAGAGCATT
* *
3760 TGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGCAATGGGGACACTTTTTTCAAA
647 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
3825 TGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATACCACCAAAAATA
712 TGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
3890 CAAGGATCATGCCTTCCAAGTTTGGCA-CCAAAACTCCTTCTGAAAGAATTTTAAAAAAATCTCG
777 CAAGGATCATGTCTACCAAGTTTGG-AGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCG
* *
3954 AACCGTAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACAAGTCGTCTTGCCATG
841 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
4009 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTA
1 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
4074 GGGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCACATCC
66 TGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
4139 CACCTCT-TTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGA
131 CGCCTCTCTT-GCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
* * ** * * *
4203 AGTTCATTCCCAGTCTAAGATC-AGACCAAAATGAGCATTGTAGCAGC-AGTATC-AGTAGCACA
195 AGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGTGGCAGCAAG-ATCGA-CAGCACG
* * * * * * *
4265 CAAGGTGGGACCCGGCCG-ATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGG
257 C-AGGGGGGACCCGACTGAACCCT-GGCTTGCGCATCCTGCCCCACTGGCTGGCTGAGCGCCCGC
* ** * *
4329 ACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTTGCAGTCTAAGCTTACGAAGTTCA
320 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* **
4394 TTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCT
385 TTCCCAGTGTAAGATCGGATCGGACCGAGGGTTGTAGGTGCACATGCTGGGCTCGGGCATGTGCT
* * *
4459 GGTGCCGCATTTTTTTTCGTCCAGGG---CA---T-----CATCGTCGGAGAACCTGACCGGCGG
450 GGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGG
* * * * * * *
4513 CATAGGGGTTCAGGCGATTGGGGGCGGGCGGCTTTGCGCACATGACGTGCGATGGGTGCTGGTAC
515 CATTGGGGTTCCGACGATTGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
4578 TTGACCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
580 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
4643 TTTGAGATTTTAC-GAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTATTT
645 TTTGAGATTTTACAG-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT-TTT
*
4707 -AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
708 CAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* ** * * *
4771 AATACAAGGATCACGTCTACCAAGTTTGGAGAAAAAAATACTT-TGAAAAAATTTTTTAAAAAAT
773 AATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAAAAT
* * *
4835 C-CTGAACCATAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGTGTCGTCTTGCCATG
837 CTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
4894 AAACTTCACATGAAGTCTTAAGGGACCATTGTATGAATCTACAAGTCATAAAAATGGCATTGGCA
1 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
4959 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
66 TGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * **
5024 CGCCTCTGTGGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTTGTCAGTTGGCTTAGGCATACATA
131 CGCCTCTCTTGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
* * ** * * *
5089 GTTCATTCCTAGTCTAAGATC-AGATCAGACCAAGGATTGTGGTAGCAAGATCGGCAGCACGCAG
196 GTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGTGGCAGCAAGATCGACAGCACGCAG
* * * * * * * * * *
5153 GGGGGACCCGACTGATTCCC-GACTTGCCCATCCTGCCACTCTAGCAGGCTGAGCGGCCGTACAC
260 GGGGGACCCGACTGA-ACCCTGGCTTGCGCATCCTGCCCCACTGGCTGGCTGAGCGCCCGCACGC
*
5217 TCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
324 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
5282 TAGTGTAAGATCGGATTGGACCGAGGG-T-TACGAGTTCACATGCTGGGCTTGGGCATGTGCTGG
389 CAGTGTAAGATCGGATCGGACCGAGGGTTGTA-G-GTGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
5345 TGCTGTATTTTTTTTTTTGCCTGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGG
452 TGCCGCA--TTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGG
* **
5410 CATTAGGGTTCCGACGATTAGGGGGC-GGGGGGTGTGCGGTCATGATGTGCGATGGGTGCTGGTA
515 CATTGGGGTTCCGACGATT-GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
5474 CTTAGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
579 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
5539 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTAAAATGGGGACACTTTTTTA
644 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * * *
5604 AAATGGTCACAAAATCCTATACAATTCGAGCTTTTACCTGAA-TTTTTTGTGCATGCCAACAAAA
709 AAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
** * * * * *
5668 ATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTGCTTCTAAAAAAATTTTAAAAAAATCC
774 ATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT
* * * *
5733 CAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAAGTTGTCTTGCCATG
839 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
5790 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCA
1 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *** * * *
5855 TGGTAGAAATATGAAGATGTGCCTAAATCCAAAAACCACCCTATTGATCCAAGGCTTACGCATCC
66 TGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * **
5920 CGTCTCTCTTGCCGGCATAGTACCCGTCCGTCCGCTCGTTTCGTCAGTTGGCGTAGGCATTTGGA
131 CGCCTCTCTTGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
* * *
5985 GTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGG
196 GTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGG
* * * * * * * *
6050 GGGCCAACTGGCCGAACCCTGGCTTGCGCATTCTGCCCCAATGGCCGGCTGAGCGCCCGCACGCT
261 GGG-GACCCGACTGAACCCTGGCTTGCGCATCCTGCCCCACTGGCTGGCTGAGCGCCCGCACGCT
* * * * *
6115 CGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCTTTCCC
325 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *** * * *
6180 AGTGTAAGATTGGATCAGACCGAGGGTTGTAGGCATACATGTTGGGCTCGAGCATGTGTTGGTGC
390 AGTGTAAGATCGGATCGGACCGAGGGTTGTAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * *
6245 CGCATTTTTTTTCACCCGGGGCATCATCGTCGGAGCATCGTCGGAGAACCTGACAGACGGCATTG
455 CGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * **
6310 GGGTTTCAACGATTGGGGGACGGGGGGGTGTGCGGTCATGATGTGCGATGGGTGCTGGTACTTGG
520 GGGTTCCGACGATTGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
6375 CCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTG
584 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * *
6440 AGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGGACAGTTTTTTCAAATG
649 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
6505 GTCACAAAATCTTGTACTCTGTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAGAATACA
714 GTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* *
6570 AGGATCATGTCTACCAATTTTGGAGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCTCGAAC
779 AGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAAC
* *
6635 TGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
844 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
6687 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
1 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
6752 TAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCC
66 TGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
6817 CGCCTCTCTTGCCGGCGTATTGCCCACCCGTTCGCTCGTTTCATCGGTTGGCCTAGGCATACGAA
131 CGCCTCTCTTGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
* * * * * * * * * *
6882 GTTCATTCCCAGTCTAAGATTGAATCAGACCGAGGGTTGTGCCAGTAGGATAGGCAACACGTAGG
196 GTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGG
** * * * *
6947 GGGGACCCGGTTG-ATCCTCAGCTTGTGCATCCTGCCCCACTGGCTGGCTGAGCGCCCACACGCT
261 GGGGACCCGACTGAACCCT-GGCTTGCGCATCCTGCCCCACTGGCTGGCTGAGCGCCCGCACGCT
*
7011 CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
325 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
** * * * * * **
7076 AGTGTAAGATCAAATTGGACCAAAGGTTGTGGGTGCA-ATGCTAGG-TTAGGCATGTGCTGGTGC
390 AGTGTAAGATCGGATCGGACCGAGGGTTGTAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * * *
7139 CGCATTTTTTTTCGCCCGGGGCACCATCG-CTAAAGCATCATCGGAGAACCTAACTGGCGGCATT
455 CGCATTTTTTTTCGCCCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * * * *
7203 AGGGTTCCGACGATTGGGGG-GCGGGGGGTATGC-CACATGATGTACGATAGGTGCCGGTACCTG
519 GGGGTTCCGACGATTGGGGGCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
7266 GCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
583 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
7331 GAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
648 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*** * * * *
7396 GGTCACCCTAT-C-GATCCACTTCGAGTTTTTAGTTGAATTTTTTTATGCATGCCAACAAAAATA
713 GGTCACAAAATCCTG-TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* ** *
7459 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAAATTTAAAAAAAATCTCGA
777 CAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGA
* *
7524 ACCGTAAAAAGTTTCAAAAATTGTCAAAAATAGAAAACGAGTCGTCTTGCCATG
842 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
7578 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCA
1 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
7643 TGGTAGAAATAGGAAGATATGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCATCT
66 TGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
7708 CGCCTCTCTTGTCGACGTAGTACCCG-TCG-CTCGCTCATTTCGTCGGTTGGCTTAGGCATACGG
131 CGCCTCTCTTGCCGGCGTAGTGCCCGCCCGTC-CGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
* * * **
7771 AGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGCAAGATC-AGCAGCACATA
195 AGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCAGCAAGATCGA-CAGCACGCA
* * * * ** * * *
7835 GGGGGGGACCCGACTGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTATCCGAGCGCCTGTACG
259 -GGGGGGACCCGACTGAACCCTGGCTTGCGCATCCTGCCCCACTGGCTGGCTGAGCGCCCGCACG
* *
7900 CT-AGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTGTAAG-AT-C-G-G---A--
323 CTCA-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
7954 -CC------AGA----AT------GAGGGTTGTAGGTACACATACTGGGCTCGGGCATGTGTTGG
387 CCCAGTGTAAGATCGGATCGGACCGAGGGTTGTAGGTGCACATGCTGGGCTCGGGCATGTGCTGG
* * ** *
8002 TGCTGCATTTTTTTTCGCCCAGGGCACCATCACCGGAGCATCG-CTAGAGAACCTGACCGACGGC
452 TGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGC
* * * **
8066 ATTGGGGTTTCGACGATTGGGGGGGCGGGGGGTGTGCACACATGATGTAAGATGGGTGCTGGTAC
516 ATTGGGGTTCCGACGATTGGGGGCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * * * *
8131 TTGGCCCTTATATTGACCCCTTATCCCTCATCAAACCTTGAGAACTCACCCCCCCCCGTAAAGGG
580 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA--CACCCCCTTAAAGAG
8196 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
643 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
8261 CAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAAGAAA
708 CAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
8326 AATACAAGGATCATGTCTACCAAGTTTTGG-GCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
773 AATACAAGGATCATGTCTACCAAG-TTTGGAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
* * ** * * * *
8390 CTCGGACAGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCATATTGCCATG
837 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
8449 AAACTTCACATGAAGGCTTAAGGGACCATTGCATCAATTTACAAGCCATAAAAATGGCATTGACA
1 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * **
8514 TGGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCTTATCC
66 TGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * * *
8579 CATCTCTCTAGCCGGCGTGGTGCCCACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
131 CGCCTCTCTTGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
* *
8644 GTTCATTCCCAATCTAAGATCGAACCGGACTGAGGGTT
196 GTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTT
8682 ATGGTAGTAG
Statistics
Matches: 4039, Mismatches: 565, Indels: 162
0.85 0.12 0.03
Matches are distributed among these distances:
864 12 0.00
865 7 0.00
866 83 0.02
867 13 0.00
868 66 0.02
870 91 0.02
871 280 0.07
872 74 0.02
873 1 0.00
874 3 0.00
880 2 0.00
883 3 0.00
884 175 0.04
885 533 0.13
886 59 0.01
887 1 0.00
888 1 0.00
889 4 0.00
890 93 0.02
891 376 0.09
892 157 0.04
893 11 0.00
894 92 0.02
895 80 0.02
896 894 0.22
897 917 0.23
898 9 0.00
899 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGCCTCTCTTGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGG
GGGGACCCGACTGAACCCTGGCTTGCGCATCCTGCCCCACTGGCTGGCTGAGCGCCCGCACGCTC
ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTGTAAGATCGGATCGGACCGAGGGTTGTAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
GCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
GGTTCCGACGATTGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCG
TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
Found at i:7067 original size:26 final size:26
Alignment explanation
Indices: 7031--7083 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
7021 GTTGACTTAG
7031 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
7057 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
7083 G
1 G
7084 ATCAAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14681 original size:26 final size:27
Alignment explanation
Indices: 14645--14698 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
14635 GTTGACTTAG
14645 GCATACGGAGTTCA-TTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
*
14671 GCATACGGAGTTCATTTCCCAGTGTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
14698 G
1 G
14699 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTTCCCAGTCTAA
Found at i:16788 original size:26 final size:26
Alignment explanation
Indices: 16752--16804 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16742 GTTGACTTAG
16752 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16778 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16804 G
1 G
16805 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18137 original size:896 final size:897
Alignment explanation
Indices: 14987--24567 Score: 12199
Period size: 897 Copynumber: 10.8 Consensus size: 897
14977 GTTGACTTAG
* * *
14987 GCATACGGAGTTCATTCACAGTGTAAGATCGGACCAGACCGATGGTTACGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
15052 CTCGAGCATGTGCTGGTGCCA-CAATTTTTTTCGCCCGGGGCACCATCGCCGGAGCATTGTCGGA
66 CTCGGGCATGTGCTGGTG-CAGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGA
* ** *
15116 GAACCTGACCGGTGGCATTGGGGTTCCGGTGATTGGGGGGTCGGGGGGGTGTGCGCACATGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGC-GGGGGGTGTGCGCACATGATGT
* * *
15181 GTACGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTAATCAAACCTCGAGAACT
194 G--CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* * *
15246 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGG
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
* *
15311 AATGGGGACACTTTTTT-AAATGGTCACAAAATCCGGTACACTTTGAGTTTTTAGCTGAA-TTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
15374 TTGCGCATGCTGAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTTGA
387 TTGTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * *
15438 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAAATTGTGAAAAATAGAAAACGAGT
451 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGT
**
15503 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAA
515 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
15568 ATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
580 ATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
15633 ACCTGCTCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGATGGCT
645 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
15698 TAGGCATAC-GATGTTCATTCCTAGTCTAAGATCGGACCGGA-TCGAGGGTTGA-GGCAGTAGGA
710 TAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTT-ACGGCAGCAAGA
* * * * * * * *
15760 TC-AGCAGCATGTA-GGGGGGACCCAATCGATCCCCGGCTTGGGCATCTTGCCCTTCTGGCCAGC
772 TCGA-CAGCACGCAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
* * * * *
15823 TGAACGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTTTAA
836 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15885 GGATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACAGAGGGTTACGGG-GCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * ** *
15949 CTCAGGCATGTGCTGGTGTCA-CATTTTTTTTCCCCCGAGGCACCATCGTCGGAGCATCACCGAA
66 CTCGGGCATGTGCTGGTG-CAGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * * * *
16013 GAACCAGATCGACAGCATTGGGGTTCCAACGATTGGCGGGGCGGGGGGTGTGCGCACATGATGTG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTG
* * * *
16078 AGATGGGTGCTTGTATTTGG--C--ATATTGGCCCCCTATCCCTCACCACAACCTTGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA-AACCTTGAGAACTCA
* * *
16139 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
* *
16204 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACTCTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* *
16269 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
** * ** *
16334 AAATTTTAAAAAAATCTGGAGCCGTAAAAAGTTTTGAAAATCGTGAAAGATAGAAAACGAGTCGT
453 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
16399 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGT
518 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-T
* *
16464 GGCATTGGCATGGCCAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGC
582 GGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
16529 TTGCGCATTCCGCCTCTCTGGCCGGCGTAGTGCCTGCCGGCCCGCTCGTTTCGTCGGTTGGCTTA
647 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
16594 GGCATACGGAGTTCATT-CCAGTCTAAGATTAGATCGGACTGAGGGTTGCAGTAGCAGGATCGAC
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAAGATCGAC
* * * ** * * * * * *
16658 AGCACGTAAGGGGGGACCTGACCGATCCCC-GCTTATGCATCCTACCCCTTTGGTCGGTTAAGTG
777 AGCACGCAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
*
16722 CTCGCACGCTCGGTTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16778 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTTGTGGGTGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
16843 CTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGCACCATCGTCGGAGCATCATCGAAG
66 CTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * * * *
16908 AACCTAACCGACGACATTGGGGTTCTGGCGATTGGGGGGGC-AGGGG-GTGAGCACATGATGTGC
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGC
* * * *
16971 GATGGGTGCTGGCACTTGGCCGTTATATTAGCCCCCTGTCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
17036 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
* * * *
17101 GGGACAC-TTTTTCGAAATGGTCTCAAAATCCTGTACACTTTGAGTTTTTAGCTGAATGTTTTTA
326 GGGACACTTTTTTC-AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
17165 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCCTTCTAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
17230 ATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
455 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
17295 TCCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
17360 ATTGACATGGCAAAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCATGACTTG
585 ATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
17425 CGCATCCCGCCTCTCTGGCCGGCATAGTG-CCGCCTGCCCGCTCGTTTCATCAGTTGGCTTAGGC
650 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** * * * *
17489 ATACGGAGTTCATTCCCAGTCTAAGATCAGAACATACCGAGGGTTACGGTAGTAAGATCGATAGC
715 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAAGATCGACAGC
* * * * * * *
17554 ACACAGGGGGGGACCC-AGCCGATCCCCGACTTGCGCTTCCTGCCCATCTAGCCGGTTGAGCACC
780 ACGCAGGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * * *
17618 CGCACGCTCATTTCATGGGTTGACTTAGTCATATGGAGTTCATTCCCAGTCTAA
844 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
17672 GCATACAAAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGTGGATGCACATGCAT-G
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGC-TGG
* ** * * ** *
17736 GCTTGGGCATGTGCTGGTGCAGCCCTTTTTTTCACCCGGGGCACCATCATCAAAGCATCGTCGTA
65 GCTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGA
* * *
17801 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGAGGGGGCGGGGGG-GTACACACATGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGG-GGGGGCGGGGGGTGTGCGCACATGATGT
* * * *
17865 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAAACTTGAGAACACA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
17930 CAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
*
17995 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTCCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
18060 GTGCATGCCAACAAAAATACAAGGATCACATCTACCATGTTTAGGGCCAAAAATCCTTCTAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
** *
18125 AATTTTAAAAAAATCCCGAACTATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
454 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * ** *
18190 TTGCCATGAAACTTTACATGCAGGCTTAAAAGACCATGGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
18255 CATTGGCATGGTAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
584 CATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
18320 GCGCATCCCGCTTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGG
649 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * ** *
18385 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGTGGCAGCAAGATCTACAG
714 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAAGATCGACAG
* * * * *
18450 CACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGTGCC
779 CACGCAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
*
18515 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
18569 GCATACGGAGTTCATTCCCAGTGTAAGAGCAGATCGGATCGAGGGATGCGGATGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
18634 CTCGGGTATGTGCTGCTGCAGCATTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * **
18699 AACCTGACC-GCCGCATTAGGGTTCTGACGATTGGAGGGGGCGGGGGGTGTACGTTCATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGG-GGGGGCGGGGGGTGTGCGCACATGATGTG
* * *
18763 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
18828 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
* * * *
18893 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAATTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
18958 TGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
19023 ATTTTAAAAAAATCCCGAGCCGTAAAAAGTTTCAAAAATTGTGAAATATAGAAAACAAGTCGTCT
455 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
19088 TGCCATCAAACTTTACATGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
19153 ATTGGCATGGCAAAAAT-TAGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACAGCTT
585 ATTGGCATGGCAAAAATAT-GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
19217 ACGCATCCTGCCTCTCTGGCCAGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
649 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
19282 CCTACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGATTGAGGGTTGCGACAGCAAGATTGGCAG
714 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAAGATCGACAG
* * * * ** * *
19346 CATGTAGGGGGGGACCCGGCCGATCCACGGCTTGCGCATCCTATCCCTCTGGCCGGCTGAGTGCT
779 CACGCAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
19411 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
844 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
19465 GCATACGGAGTTCATTCCTAGTGTAAGATCGGACCAGACCGAGGGTTACGGGTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * **
19530 CTCGAGCATGTGTTGGTGCCA-CATTTTTTTTCGCCCGGGGCACCATCGCCGGACCATCGCCAAA
66 CTCGGGCATGTGCTGGTG-CAGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGA
* * *
19594 GAACCTAACCGGCGCCATTGGGGTTCCGACGATTGGGGGGGGCGGGGGGGTGTGTGCACATGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGGGGC-GGGGGGTGTGCGCACATGATG
* * *
19659 TGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
19724 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAG-ACATTAAAGTGTCTGA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCA-ATTAAAGTGTCTGA
* *
19788 AATGGGGACACTTTTTTCAAATGGTTAC-AAATCCTGTACACTTGGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
19852 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTTTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
** *
19917 AAAATTTTAAAAAAATCAAGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
452 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * * *
19982 TCTCGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGATTTTACAAGCCATAAAATT
517 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
20047 GGCATTGGCATGGCAAAAATAT-ACAGATGTGCCTAAACCAACCTGCTACCCTATCGATCCACGG
582 GGCATTGGCATGGCAAAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
20111 CTTGCGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCTCGTTGCGTCGATTGGCTT
646 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* ** * *
20175 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCAAGGGTTGTGGCAGCAGGATTG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTACGGCAGCAAGATCG
** * * * * * *
20239 GTAGAACGCA-GGGGGGACCCGACCAATCCCTGACTTACGCATCCTGCCCCTCTGGTCGGCTGAG
775 ACAGCACGCAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
*
20303 CGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
20361 GTGTACGGAGTTCATTCCTAGTATAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * ** *
20426 CTCGGGCATGTGTTGGTACCGCATTTTTTTTTGCCCGGGGCACCATCGTCGAAGCATCACCAGAG
66 CTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
20491 AACCTGATCGGTGCCATTAGGGTTCCGACGATT-TGGGGGCGGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGC-GGGGGGTGTGCGCACATGATGTG
*
20555 CGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
20620 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
* * * *
20685 GGGGACACTGTTTTCAAATGGTCACAAAATCCAGTACACTTCAAGTTTTAAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
20750 TGCATGCCAACAAAAATACAACGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAG
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA-
* * * * *
20814 AA-TTTAAAGAAAATCTCTAACCGTAAAAAATTTTAAAAATAGTGAAAAATAGAAAACGAGTCGT
454 AATTTTAAA-AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
20878 CTTGCCATGAAACTTGACATGAAGGCTTAATGGACCATTGTATGCATTTACAAGCCATAAAAATT
518 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
20943 GCATTGGCATGGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGACC
583 GCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
21008 TGCGCATCCCGTCTCTCCGGCCGGCGTAGTGCCCGCCCGCCCGTTCATTTTGTCGGTTGGCTTAG
648 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
21073 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTACAGTAG-AAGGATCAAC
713 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAA-GATCGAC
* * * * * * * *
21137 ACCACACAGGGGGGGACCCGATCGATCCCCGACTTGCGCATCCTACCCTTCTGGCTGGCTGAACG
777 AGCACGCAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * * * * * *
21202 CACGCATGCTCGTTTCGTGGGTTCATTTAGGCATACAGAGTTTATTCCCAGTCTAC
842 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** *
21258 GCATACGAAGTTCATTCCAAGTGTAAGAT-GAGACC-GAATTAAGGGTTGGGGGTGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCG-GACCAG-ACCGAGGGTTGCGGGTGCACATGCTG
* * *
21321 GGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCGCGGGGCACCACCGTCGGAGCATCGTCG
64 GGCTCGGGCATGTGCTGGTGCAGCA-TTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCG
* * *
21386 GAGAACCTTACCGGCGGCATTGGGGTTCCGACGATTGGAGGGGCGGGGAGGGGGGTTGCGCACAT
128 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGG-GGGG-GCGG-GGGGTG-TGCGCACAT
*
21451 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
189 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
* * * *
21516 ACACACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTTGCCAATAGCCATTAAAGTGT
254 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCAATTAAAGTGT
*
21580 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGCTGTACACTTCGAGTTTTTAGCTGAAT
318 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
21645 TGTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTT
383 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
21710 TGAAAAAATTTTAAAAAAATCCTGAATCGTAAAAAGTTTCAAAAA-CTATGAAAAATAGAAAACG
448 TGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACG
* * *
21774 AGTCGTCTTGCCATGAAACTTCACATGATGGCTTAAGGGACCATTGTATGAATTTACTAGCCATT
512 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
21839 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
577 AAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
21904 ACGGCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCACCCGCCCGCTCATTTCGCCGGTTG
642 ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * ** * * * * * *
21969 GCTTAGGCAAACAGG-GTTCATTCGCAGTCTAAGATTGGACTGGACTAAGAGTT-CTGGTAGTAG
707 GCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTAC-GGCAGCAA
* * * * * ** * * *
22032 GATTGGCAGCACACAGAGGGGGACCTGGTCAATCCCCAGCTT----A---TG---C-AT---C--
770 GATCGACAGCACGCAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
*
22081 CT----------AC-C-C----C------T--C-T-GGCATACGGAGTTCATTCCCAGTTTAA
835 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
22118 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCTGATCGA-GGTCTGCGGGTGCACATGCAGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGT-TGCGGGTGCACATGCTGG
* * * *
22182 GCTCGAGCATGTGCTGGTGC--TA-TTTTTTTCACTCGGGGCACCATCGTCGGAGCATCG-CTGG
65 GCTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTC-GG
* * *
22243 AGAACCTGACCGACGGCATTGGGGTTCTGACGATTGGGGGGCGGGGGGGGTGTGCGCACATGATG
129 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGG-GCGGGGGGTGTGCGCACATGATG
* * *
22308 TGCAATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGTGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
22373 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTC-ATTAAAGTGTCTAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CAATTAAAGTGTCTGA
22437 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
22502 TTATGTATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAAATCCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
** * * *
22567 AAAA-TTTAAAAAAATTCTTGAACCGTAAAAAGTTTCGAAAATCATAAAAAATAGAAAACGAGTC
452 AAAATTTTAAAAAAA-TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
22631 ATGTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT--AAA
516 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
22694 TGGCATTGGCATGGC-AAAATATGAAGATGTGCCTAAACCCACCTACCACCCCTATCGA-CCACG
581 TGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACG
**
22757 GCTGTGCGCATTCCCGCCTCTCTGGCCGGCGTAGTGCCCGGCCCGCCCGCTCGTTTCGTTTGTTG
645 GCT-TGCGCA-TCCCGCCTCTCTGGCCGGCGTAGTGCCC-GCCCGCCCGCTCGTTTCGTCGGTT-
* ** * * *
22822 GGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATTGGACCAGACCGAGGGCTGTA--GCAGAA
706 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG-T-TACGGCAGCA
* * * * ** *
22885 AGAT-TAGCAGTACGTAGGGTGGGACCCGACTAATCCCCGGCTTGCGGCATCCTGCCCCTCTGGT
769 AGATCGA-CAGCACGCAGGGGGGGACCCGACCGATCCCCGGCTTGC-GCATCCTGCCCCTCTGGC
* * * *
22949 CGACT-AGCACCCGTTACTGCTCCATTTCGT-GGTTGACCTTAGGCATACGGAGTTCATTCCCAG
832 CGGCTGAGCGCCCG-CAC-GCT-CGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAG
* *
23012 TATGA
893 TCTAA
* * * *
23017 GCATACGGAGTTCATTCCCAGTGTAAGATC-AACCGGACCAAGGGTTGCGGGTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * ** * *
23081 CTCGAGCATGTGTTGGTGTC-GAATTTTTTTTCACTCGGGGCTTCATTG-CTGGAGCATC-ACAG
66 CTCGGGCATGTGCTGGTG-CAGCATTTTTTTTCGCCCGGGGCACCATCGTC-GGAGCATCGTC-G
* * * * * * * ** *
23143 GAGAACCTGGCCGACGGCATTGGGTTTCTGATGATT-GGGGGGCAGAGGGTGTATGAACATGATG
128 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATG
*
23207 TGC-AT-GGTGCTGGTACTTGGCCCTTTATATTGGCCCCC-ATCCCTCATCAAACCTCGAGAACT
193 TGCGATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
23269 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
23334 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTCGAGTTTTTAGCTGAATCTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC-TTCGAGTTTTTAGCTGAAT-TT
*
23399 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
*
23464 AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAACGAGT
450 AAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
23528 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
515 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
23593 ATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
580 ATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
23658 GCTTGCGCATCCCGCCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCTCTCATTTCGTCGGTTGGCT
645 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
23722 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTA-GG-AGTAGGAT
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG-T-TACGGCAGCAAGAT
* * * * * * * *
23785 CGGCAGCACGTAGGGGGGGACCC-AGCTGATCCTCGGCTTGTGCATCTTGCCCCTCAGGCCGGTT
773 CGACAGCACGCAGGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
* * * * * *
23849 GAGCGCTCGCACGATCGTTTCGTAGGTAGACTTAGGCATACAGAGTTCATTCCCAATCTAA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
23910 GCATACAGAGTTCATTCTCAGTGTAAGATCGGACCGGACCGAGAGTTACAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * * * * * * * **
23975 CTTGAGCATGTCCTGGTGCCGTA-TTTTTTTCACCCGAGGCACCATTGCCGGAACATCGCCAAAG
66 CTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * **
24039 AACCTAACCGGCGGTATTGGGGTTCCGATGATT-GGGGGGCGGGGGGGTGTGCAAACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGC-GGGGGGTGTGCGCACATGATGTG
* * *
24103 TGGTGGGTGCTGGTACTTGGCCTTTATATT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * *
24167 A-CCCTTTAAAGAGCATTTGAGATTTTATAGATTTGCTGCCAGTAGCAATTAAAGTGTCTGAGAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
*
24231 GGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * * *
24296 GGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTT-GGG---TAA-TGC--C-----
389 -GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
24349 --A----ACAAAAAT-AC-AACCATAAAAAGTTTC-GAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
24405 CTTGCCATGAAACTTCAAATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATG
518 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
24470 GCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCA
583 GCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * **
24535 TGTGCATCCCGCCTCTTTGGCCGGTATAGTGCC
648 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC
24568 GTCCCCACCC
Statistics
Matches: 7652, Mismatches: 870, Indels: 345
0.86 0.10 0.04
Matches are distributed among these distances:
850 40 0.01
851 33 0.00
852 37 0.00
853 374 0.05
854 82 0.01
855 11 0.00
856 69 0.01
858 1 0.00
859 4 0.00
860 92 0.01
861 3 0.00
862 2 0.00
864 1 0.00
865 1 0.00
866 1 0.00
869 1 0.00
870 1 0.00
871 2 0.00
873 16 0.00
874 172 0.02
875 10 0.00
876 8 0.00
880 1 0.00
881 2 0.00
883 1 0.00
885 1 0.00
886 2 0.00
887 1 0.00
889 3 0.00
890 23 0.00
891 91 0.01
892 118 0.02
893 559 0.07
894 1164 0.15
895 478 0.06
896 1274 0.17
897 1616 0.21
898 434 0.06
899 197 0.03
900 55 0.01
901 112 0.01
902 546 0.07
903 13 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCAGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
TTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAAGATCGACAGCA
CGCAGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:18579 original size:26 final size:26
Alignment explanation
Indices: 18543--18595 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18533 GTTGACTTAG
18543 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
18569 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18595 G
1 G
18596 AGCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19476 original size:26 final size:26
Alignment explanation
Indices: 19439--19491 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19429 GTTGACTTAG
19439 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
19465 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19491 G
1 G
19492 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20367 original size:26 final size:26
Alignment explanation
Indices: 20338--20387 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20328 GACTTAGGCA
*
20338 TACGGAGTTCATTCCCAGTCTAAGTG
1 TACGGAGTTCATTCCCAGTATAAGTG
*
20364 TACGGAGTTCATTCCTAGTATAAG
1 TACGGAGTTCATTCCCAGTATAAG
20388 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTATAAGTG
Found at i:22128 original size:26 final size:26
Alignment explanation
Indices: 22092--22144 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22082 TACCCCTCTG
*
22092 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
22118 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
22144 G
1 G
22145 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTGTAA
Done.