genome.fa.s455.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168280.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_508, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24574

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2623--2737	35	3.2	34	75	7	104	49	17	20	13	1.79
2597--2737	70	2.0	72	83	2	178	48	15	20	15	1.81
2782--2918	35	3.9	35	72	0	112	43	13	24	18	1.87
2790--2921	70	1.9	70	82	0	165	43	13	25	18	1.86
2589--2965	206	1.8	206	84	0	511	48	15	19	16	1.81
3112--3298	34	5.5	34	73	11	150	27	16	19	35	1.94
3966--4121	35	4.6	34	73	13	115	32	14	16	37	1.88
4254--4288	17	2.1	17	89	10	54	0	14	0	85	0.59
4504--4567	24	2.6	24	87	2	92	43	9	15	31	1.78
5921--6000	26	3.1	25	77	13	74	10	15	0	75	1.05
9744--9785	21	2.0	21	86	4	59	61	4	7	26	1.42
16900--16926	14	1.9	14	100	0	54	85	0	7	7	0.75
17279--17319	10	4.0	10	81	6	55	82	0	14	2	0.76
17279--17332	22	2.4	22	84	9	65	79	0	14	5	0.90
18758--18815	22	2.6	21	76	10	53	31	13	18	36	1.90
18780--18883	43	2.4	43	76	7	113	30	24	16	28	1.96
18830--18915	22	4.0	22	76	13	63	33	25	13	26	1.94
18876--18922	22	2.1	23	88	11	71	40	27	10	21	1.86
19399--19469	21	3.3	21	69	11	54	33	12	12	40	1.81
19703--19818	44	2.7	43	80	5	126	28	12	17	42	1.85
19963--20005	21	2.0	22	86	9	61	32	13	20	32	1.92
19977--20118	44	3.1	46	78	9	123	37	9	14	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20033--20111	23	3.4	23	72	11	72	40	7	11	40	1.70
20016--20118	46	2.3	43	79	11	109	37	6	13	41	1.71
20106--20190	11	8.7	10	72	21	56	24	14	14	47	1.81
20106--20190	19	4.3	20	86	4	120	24	14	14	47	1.81
20103--20190	39	2.3	39	95	0	158	23	13	14	47	1.80
20232--20269	20	1.9	20	84	10	51	31	2	13	52	1.54
23052--23099	17	2.8	17	83	0	69	45	2	0	52	1.12

Tables:   1

The End!