Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168283.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24546
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Found at i:104 original size:27 final size:27
Alignment explanation
Indices: 66--120 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
56 CCGGTCTGAT
66 CTTACACTGGAAATG-AACTTCCGTATG
1 CTTACACTGGAAATGAAAC-TCCGTATG
*
93 CTTAGACTGGAAATGAAACTCCGTATG
1 CTTACACTGGAAATGAAACTCCGTATG
120 C
1 C
121 CTAAGGTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 23 0.88
28 3 0.12
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (27 bp):
CTTACACTGGAAATGAAACTCCGTATG
Found at i:1005 original size:26 final size:26
Alignment explanation
Indices: 971--1023 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
961 CCATTCTGAT
971 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
997 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
1023 C
1 C
1024 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:1903 original size:26 final size:26
Alignment explanation
Indices: 1867--1919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1857 CCGATCCGAT
*
1867 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATCAACTCCATATG
*
1893 CTTACACTGGGAATCAACTCCGTATG
1 CTTACACTGGGAATCAACTCCATATG
1919 C
1 C
1920 CTAAGTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCATATG
Found at i:2025 original size:898 final size:897
Alignment explanation
Indices: 8--7779 Score: 9893
Period size: 898 Copynumber: 8.7 Consensus size: 897
1 AAAATAC
* * * * * *
8 GGCACCAGCACATGCCCAAGCCCAACATGTGCACCCACAACCCTAC-GTCCGGTCTGATCTTACA
1 GGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCT-CGGTCCGATCCGATCTTACA
* * * *
72 CTGGAAATGAACTTCCGTATGCTTAGACTGGAAATGAAACTCCGTATGCCTAAGGTCAATTCCAT
65 CTGGGAATGAAC-TCCATATGCTTAGACTGGGAATG-AACTCCGTATGCCTAA-GTCAA-CCCA-
* * * **
137 CGAAACGAGCGTTGCGGGCGCTCAGTCGGCCAGAGGAGCAGGATGCACAAGCCATGGATCGGCCG
125 CGAAACGAGC-ATGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCG
* * * * * * *
202 GGTCCCCC-CTCTGTGCTATCGATCTTGCTACTACAACCCTCGATCCGGTCTGATCTTAGACTGG
189 GGTCCCCCTCTATGTGCTACCGATCCTGCTACTGCAACCCTCGGTTCGGTC-AATCTTAGACTGG
* * * * * * *
266 GAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGTGGGTGGGCGAGCACTGCGTCGGCCA
253 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCA
* *
331 AAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
318 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
396 TTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTG
383 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
** * * *
461 TGAAGTTTCATGGCAAGACGACTCG-TTTAAATTTTTCACGATTTTTAAAACTTTTTAGGGTTCG
448 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* * * *
525 GGATTTTTTTTAAATTCTTTCAGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTAT
513 AGA-TTTTTTTAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
590 TTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCG-AAGAGTACAGGATTTTGGGACCATT
577 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGGATTTTGTGACCATT
* * *
654 TGTAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAA
642 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
719 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGACAGGGGGCCAATATAAGGGCCAA
707 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * *
784 GTATCAGCACCCATCACACATCATGTTC-CACACCGACACCCCGCCCCCCCAATCGTCAGAA-CC
772 GTACCAGCACCCATCGCACATCATGTGCGCACA-C--C-CCCCACCCCCCCAATCGTCGGAACCC
* * * * * *
847 CCAATGTCGCCGGTTAGGTTCTCCAACGATGCTCTGACGATGGTGCCCCGGGCGAAAAATATATA
833 CCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCCAAAAA-AAATG
*
912 C
897 T
** * * * * *
913 GGCACCAATACATGCCCGAGCCCAGCATGTGTACCTGCAACCCTCAGTCC-ATTCTGATCTTACA
1 GGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGA-TCCGATCTTACA
*
977 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAA
65 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
1042 CGAGCGTGCAGGCGCTCAGTCGGCCAGAAGGGCAGGA-GCGCAAGCCGAGGATCGGCCGGGTCCC
130 CGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
** *** * *
1106 CC-CTACATGCTGTTGATCCTGCTACTGCAACCGTCGGTTCAGTGCAATCTTAGACTGGGAATGA
195 CCTCTATGTGCTACCGATCCTGCTACTGCAACCCTCGGTTCGGT-CAATCTTAGACTGGGAATGA
* * * * ** * * *
1170 ACTCCATATGTCTAAGCCAACCGATGACACGAGCGGATGGGCGGGCACTACACCGGTCAGAGAGA
259 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
* * *
1235 CGGGATGCGTAAGCTGTGGATCGAT-GGGATGGTAGGTGTGTTTAGGCACATCTTCATATTTCTG
324 CGGGATGCGCAAGCCGTGGATCGATAGGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
*
1299 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCATGTGAAG
388 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
* * *
1364 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCAAGATT
453 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATT
* * * *
1429 TTTTTTAAGTTTTTAAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
518 TTTTTAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
1494 TGGCTTGCACAAAAAAATTAAGCTAAAAACT-GAAAGTGCACAGGATTTTGTGACCATTTGAAAA
583 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGGATTTTGTGACCATTTGAAAA
* * * *
1558 AAATGTCTCTATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCT
648 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
1623 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
713 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * ** * *
1688 GCACCCATTGCACATCATGTGCACACACCCCCCCACCCCCCCAATCACCGGAACCCCCAATGCCA
778 GCACCCATCGCACATCATGTGCGCACA-CCCCCCACCCCCCCAATCGTCGGAACCCCCAATGTCG
* * * *
1753 CCGATCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCTCGGGCCAAAAAAAATGT
842 CCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCCAAAAAAAATGT
* * * *
1809 GGCACCAGTACGTGCCTGAGCCTAGCATGTGCACCCGCAACCCTCGATCCGATCCGATCTTACAC
1 GGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACAC
* * * * *
1874 TGGGAATGAACTCCATATGCTTACACTGGGAATCAACTCCGTATGCCTAAGTTAATCCACGAAAT
66 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * *
1939 GAGTATGTGGGCGCTCCGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCAGGTCCCC
131 GAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCC
* * * ** *
2004 CTATATGTGCTACCAATCCTGCTTCCACAACCCTCGGTTCGGTCCAATCTTAGACTAGGAATGAA
196 CTCTATGTGCTACCGATCCTGCTACTGCAACCCTCGGTTCGGT-CAATCTTAGACTGGGAATGAA
* * ** **
2069 CTCCGTATGCCTAAGCCAACCGATGACACGAGCGGATGGGCGGGCACTACATCGGCCAGAGAGGC
260 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
* *
2134 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTTTGCC
325 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
* *
2199 ATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCATGTGAAGTT
390 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * *
2264 TCATGACAAGATGACTCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTATGGTTCGAGATTTT
455 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTT
*
2329 TTTAAAATTTTTTCAAAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
520 TTT-AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
2394 GGCATGCACAAAATAATTCAGCTAAAAACTCGAAA-TGTACAGGATTTTGTGACCATTT-ATAAA
584 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGGATTTTGTGACCATTTGA-AAA
* *
2457 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCGAATGCTCT
648 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * *
2522 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGACAATATAAGAGCCATGTACCA
713 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
2587 GCACCCATCACCCATCTTGTGCGCACACCCCCCACCCCTCCAATCGTTGGAACCCCCAATGTCGC
778 GCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCCAATCGTCGGAACCCCCAATGTCGC
*
2652 CGGTCAGGTTCTCC-AGCGATGCTCCGACGATGGTGCCCCGGGACAAAAAAAATGT
843 CGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGGGCCAAAAAAAATGT
* *
2707 GGCACCAGCACATGCCTGAGCCTAGCATGTGCACCCGTAACCCTCGGTCCGATCCGATCTTACAC
1 GGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACAC
* * * * *
2772 TGCGAATGAACCCCATATGCTTACACTGGGAATCAACTCCGTATGCCTAAGTTAACCCACGAAAC
66 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * * * *
2837 GAGTATACGGGCGCTCTG-CTGGCCAGAGGGACAGGATCCACAAGTCAGGGATCGGCCAGGTCCC
131 GAGCATGCGGGCGCTCAGTC-GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
* * * * * * *
2901 CCTCTATGTTCTATCGATCCTGCTGCCGCAACCCTCGATCCGGTCCAATCTTAGAATGGGAATGA
195 CCTCTATGTGCTACCGATCCTGCTACTGCAACCCTCGGTTCGGT-CAATCTTAGACTGGGAATGA
* * * *
2966 ACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCACTACACCGGCCAGAGAGC
259 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
* *
3031 CGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
324 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
3096 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
389 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* *
3161 TTCATGACAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGGTTT
454 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTT
* *
3225 TTTTAAAAATTTTTTCAAAAGAAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTG
519 TTTT--AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
3290 TTGGCATGCACAAAATAATTCAGCTAAATACTC-AAAATGTACAGGATTTTGTGACCATTTGTAA
582 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGGATTTTGTGACCATTTG-AA
*
3354 AAAA-TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
646 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
3418 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGAGCCAAGTAC
711 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * * * * *
3483 CGGGACCCATCGCCCATCATGTGCGTACACCCCCCA-TCGCCTAATCGTCTGAACCCCCAATGCC
776 CAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCCAATCGTCGGAACCCCCAATGTC
* * *
3547 ACCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCTCGGGCCAAAACAAAATGT
841 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCCAAAA-AAAATGT
* * * *
3605 GGCACCAGCACATGCCCGAGCCTAGCATGTACACCTGCAACCTTCGGTCTGATCCGATCTTACAC
1 GGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACAC
* * * * *
3670 TGGGAATGAACTCCATATGCTTACATTGGGAATCAACTCCGTATGCCTAAGTTAACCTACGAAAC
66 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * ** * * *** *
3735 GAGTATGCGGGCGCTCCGCCGGCCAGACAGGTAGGATGCTCAAGTTAGGGATCGGTCGGGTCCCC
131 GAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCC
* * * * * * *
3800 CTCTATGTGCTGCCGATCCTACT-GTCGTAACCCTCAG-TCTGATCCAATCTTCGACTGGGAATG
196 CTCTATGTGCTACCGATCCTGCTACT-GCAACCCTCGGTTC-GGT-CAATCTTAGACTGGGAATG
* * * * *
3863 AACTCTGTATGCCTAAGCCAACCGACGAAACAAGCGAGCGGGCGGGCACTACGCCAGCCAAAGAG
258 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
* *
3928 GTGGGATGTGCAAGCCGT-GATTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
323 GCGGGATGCGCAAGCCGTGGA-TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
3992 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
387 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* *
4057 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTATGGTTCGAGAT
452 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA-
*
4122 TTTTTTTAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
516 TTTTTTTAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
4187 GTTGGCATGCACAAAATAATTCAGCTAAAAACTCGAAA-TGTACAGGATTTTGTGACCATTTGTA
581 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGGATTTTGTGACCATTTGAA
* *
4251 AAAAGTGTCCCCATTTTAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
646 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * *
4316 CTTTAAGGGGGTATGAGTTCTCAAGTTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
711 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * *
4381 CAGCACCCATCGTACATCATGTGCGCACA-----C-CTCCCCCAATCGTCGAAACCTCCAATGTC
776 CAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCCAATCGTCGGAACCCCCAATGTC
* * * * ** *
4440 GTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCTGAGAGAAAAAAAATGA
841 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCCAAAAAAAATGT
* * * * * *
4497 GGTACCAGTACATGCCTGAGCCCAGCATGTGCACCCACAACCCTCGGTCC-AGTCTGATCTTACA
1 GGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGA-TCCGATCTTACA
** *
4561 CTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAA
65 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
4626 CGAGCGTGCGGGCGCTCAGTCGGCTAGAGGGGCAGGATGCGTAAGTCAGGGATCGACTGGGTCCC
130 CGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
* * * * * * *
4691 CCTCTACGCGCTACCGATCCTACTA-TCGTAACCCTCCGTTCGGTCTGATCTTAGACTGAGAATG
195 CCTCTATGTGCTACCGATCCTGCTACT-GCAACCCTCGGTTCGGTC-AATCTTAGACTGGGAATG
* *
4755 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGTACTACGCCGGCCAGAGAG
258 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
* *
4820 GCGGGATGCGCAAGCCGTGGTTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
323 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * * * *
4885 TCATGCCAATGCCACTTTTATGGCTTGTAAATTCAAACATTGGTCCCTTAAGCCTTCACGTGAAG
388 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
* * * *
4950 TTTCATGGCAAGACGACTCGTTATT-TATTTTTCATGATTTTCGAAACTTTTTACAGTTTGGGAT
453 TTTCATGGCAAGACGACTCGTT-TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGAT
* * *
5014 TTTTTTAAAATTTTTT---TAGGAGTTTAGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTT
517 TTTTTT-AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
5076 ATTGGCATGCGCAAAACAATTCAGCTAAAAACTC-AAAGTGTACAGGATTTTGTGACCATTTGAA
581 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGGATTTTGTGACCATTTGAA
* * * *
5140 AAAAGTGTCCCCATTTAAGACACTTTAACGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCT
646 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
5205 CTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGCGGCCAATATAAGGACCAAGTAC
711 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * *
5269 CAACACCCATTGCATATCATGTGCGCACACCCCCTA-CCCCCCAATCGTCGGAACCCTCAATG-C
776 CAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCCAATCGTCGGAACCCCCAATGTC
* * * ** * * * * **
5332 TGCCAGTCAGATTCTCCGATGATGCTCCGGTGATAGTGCCCTGCGCAAAAAAAAATAC
841 -GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCCAAAAAAAATGT
* * * * * * *
5390 AGCAGCAGCACATGCCCGAGCCTAGCATGTGCACTCGTAAGCCTCAGTCCGATCCAATCTTACAC
1 GGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACAC
* * ** *
5455 TGAGAATGAACTCCGTATGCTTAGACTATGAATGAACTTCGTATGCC----T-----------A-
66 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * * **
5504 -AG--T-CGGGCGCTCAGCCGGCCAGAGGGGTAGGATGTGCAAGTCGGGGATCAGTCGGGTCCGT
131 GAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCC
** * * * *
5565 CTCT-TCGTGCTGTCGATCCTACT-GTCGTAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATG
196 CTCTAT-GTGCTACCGATCCTGCTACT-GCAACCCTCGGTTCGGTC-AATCTTAGACTGGGAATG
* * * * * * *
5628 AACTTCATATGCCTAAGCCAATCGACAAAATGAACGGGCGGGCGGGCACTACGCCGGCTAGAGAG
258 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
**
5693 GCAAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
323 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
*
5758 CCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
388 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
* *
5823 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTATGGTTCGAGATT
453 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA-T
*
5888 TTTTTTAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
517 TTTTTTAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
5953 TTGGCATGTACAAAAAAATTCAGCTAAAACCTCG-AAGTGTATAGGATTTTGTGACCATTTGAAA
582 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGGATTTTGTGACCATTTGAAA
6017 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
647 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * *
6082 TTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGAAAGGGGGCCAATATAAGGTCCAATTACC
712 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * ** *
6147 AGCACCCATCGCACATCATGTGCACACACCCCCTGACCCCCCCAATCACCGGAACCCCTAATGTC
777 AGCACCCATCGCACATCATGTGCGCACACCCCC-CACCCCCCCAATCGTCGGAACCCCCAATGTC
* * * * * ** **
6212 GCCGGTCAGGTTCTCTGGCGATGCTCCGGC-ATTGGTACCCCAGG-CGTAAAAAATAC
841 GCCGGTCAGGTTCTCCGACGATGCTCCGACGA-TGGTGCCCCGGGCCAAAAAAAATGT
** * *
6268 GGCACCAGCACATGCTTGAGCCCAGCATGTGCACCCGCAATCCTCGGTCC-AGTCCGATCTTACA
1 GGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGA-TCCGATCTTACA
* * *
6332 CTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTGCGTATGCCTAAGTCAACCCACGAAA
65 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * * * *
6397 TGAGCGTGTGGGTGCTCAATCGGCCAGAGGGGCAGGATGCGCAGGCCGGGGATCGACCGAGTCCT
130 CGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCC
* * * * * * * ** *
6462 CCTCT-GGATGCTGCTGATCTTGCTGCTGCAACCCTCAGTCCGGTTTGATCTTAGACTGGCAATG
195 CCTCTATG-TGCTACCGATCCTGCTACTGCAACCCTCGGTTCGG-TCAATCTTAGACTGGGAATG
* *
6526 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGAGCACTACGCCGGCCAGAGAG
258 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
* * * *
6591 GCGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTA
323 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
*
6656 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCTTCATGTGAAG
388 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
* * *
6721 TTTCATGGCAAGACGAGTCGTTCTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATT
453 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATT
* * * *
6786 TTTTTAAAATTTTTTCAAAAGGAGTTTTAGCCTCAAACATGGTAGACATGATCCTTGTATTTTTG
518 TTTTT-AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* ** * *
6851 TTAGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTTTAGGATTTTGTGA-CATTTCAGA
582 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGGATTTTGTGACCATTTGAAA
*
6914 AAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
647 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
6979 TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
712 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* **
7044 AGCACCCATCGCACATCATGTGCGCACTCCCCCC-CGCCCCCCAATCGTCGGAACCCCCAATACC
777 AGCACCCATCGCACATCATGTGCGCACACCCCCCAC-CCCCCCAATCGTCGGAACCCCCAATGTC
* * * * ** *
7108 GTCGGTCATGTTCT---TCG--G----G--GATGGTTCCCCGGGTGAAAAAGAATGT
841 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCCAAAAAAAATGT
* * * *
7154 GACACCAGCACATGCCCGAG-CTCAGCATGTGCACTCGCAACCCTCGGTCCGGTCTGATCTTACA
1 GGCACCAGCACATGCCCGAGCCT-AGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACA
*
7218 CTGGGAATGAACTCCATATGCTTA-AGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
65 CTGGGAATGAACTCCATATGCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * * * **
7282 ACGAGCATGCGGGCGCTAAATCGGTCAGAGAGGTAGGATGCGCAAGCCGAGCATCGGTTGGGT-C
129 ACGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCC
* * * * ** * * * *
7346 CCC-CTATGCATGCTGCCAATCTTGCTGCCACAACCCTCGATTCGGTCTGATCTTACACTGGAAA
194 CCCTCTATG--TGCTACCGATCCTGCTACTGCAACCCTCGGTTCGGTC-AATCTTAGACTGGGAA
** * * * *
7410 TGAACTCTATATGTCTAAGCCGATCGACGAAACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAG
256 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAG
* * * *
7475 AGGCGGGATGCACAAGCCGTGCATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTT
321 AGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
7540 TGCCATGCTAATGCCATTTTTATGGCTTGTAAATTCATACGATGGTCCCGTAAGCCTTCATGTGA
386 TGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGA
* * * *
7605 AGTTTCATGGCAAGACGACTCGCTTTCTGTTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGA
451 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA
* *
7670 TTTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
516 TTTTTTT-AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* *
7735 TGTTGGCATGCA-AAAAACAATTCAGCGAAAAACTC-TAAGTGTACA
580 TGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAAGTGTACA
7780 CTGGGAATGA
Statistics
Matches: 6053, Mismatches: 717, Indels: 213
0.87 0.10 0.03
Matches are distributed among these distances:
872 2 0.00
873 338 0.06
874 8 0.00
876 168 0.03
877 83 0.01
878 109 0.02
879 53 0.01
880 1 0.00
882 1 0.00
884 2 0.00
885 22 0.00
886 539 0.09
887 1 0.00
888 79 0.01
889 165 0.03
891 10 0.00
892 457 0.08
893 231 0.04
894 1 0.00
895 3 0.00
896 199 0.03
897 340 0.06
898 2771 0.46
899 339 0.06
900 22 0.00
901 2 0.00
902 5 0.00
903 16 0.00
904 22 0.00
905 64 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (897 bp):
GGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACAC
TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCC
CTCTATGTGCTACCGATCCTGCTACTGCAACCCTCGGTTCGGTCAATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTT
TTAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCACCCCCCCAATCGTCGGAACCCCCAATGTCGCCGG
TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCCAAAAAAAATGT
Found at i:2816 original size:26 final size:26
Alignment explanation
Indices: 2765--2817 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2755 CCGATCCGAT
*
2765 CTTACACTGCGAATGAACCCCATATG
1 CTTACACTGCGAATCAACCCCATATG
* * *
2791 CTTACACTGGGAATCAACTCCGTATG
1 CTTACACTGCGAATCAACCCCATATG
2817 C
1 C
2818 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
CTTACACTGCGAATCAACCCCATATG
Found at i:3699 original size:26 final size:26
Alignment explanation
Indices: 3663--3715 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3653 CTGATCCGAT
*
3663 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATCAACTCCATATG
* *
3689 CTTACATTGGGAATCAACTCCGTATG
1 CTTACACTGGGAATCAACTCCATATG
3715 C
1 C
3716 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCATATG
Found at i:4584 original size:26 final size:26
Alignment explanation
Indices: 4555--4605 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4545 CCAGTCTGAT
*
4555 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
4581 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
4606 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:5477 original size:26 final size:26
Alignment explanation
Indices: 5448--5500 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
5438 CCGATCCAAT
5448 CTTACACTGA-GAATGAACTCCGTATG
1 CTTACACT-ATGAATGAACTCCGTATG
* *
5474 CTTAGACTATGAATGAACTTCGTATG
1 CTTACACTATGAATGAACTCCGTATG
5500 C
1 C
5501 CTAAGTCGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTACACTATGAATGAACTCCGTATG
Found at i:6355 original size:26 final size:26
Alignment explanation
Indices: 6326--6378 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6316 CCAGTCCGAT
*
6326 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
6352 CTTAGACTAGGAATGAACTGCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
6378 C
1 C
6379 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:7248 original size:26 final size:26
Alignment explanation
Indices: 7218--7269 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
7208 TGATCTTACA
*
7218 CTGGGAATGAACTCCATATGCTTAAG
1 CTGGGAATGAACTCCATATGCCTAAG
*
7244 CTGGGAATGAACTCCGTATGCCTAAG
1 CTGGGAATGAACTCCATATGCCTAAG
7270 TCAACCCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTGGGAATGAACTCCATATGCCTAAG
Found at i:9586 original size:26 final size:26
Alignment explanation
Indices: 9530--9586 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
9520 CTAGTCCGAT
*
9530 CTTACACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9556 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9582 CTTAG
1 CTTAG
9587 CGTGCAGGCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10119 original size:878 final size:878
Alignment explanation
Indices: 7926--10449 Score: 3462
Period size: 884 Copynumber: 2.9 Consensus size: 878
7916 CTTGATCTAG
* *
7926 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAACGGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCG
* * * * *
7991 GGCACTACGCCGACCAGAGAGACGAGATGCGTAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTT
66 GGCACTAC-TCGACCAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
8056 AGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
8121 CCCTTAAGACTTCATGTGACGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
8186 AACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
260 AACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
8251 GACATGATCCTTGTATTTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAACCTCGAAGTGTAC
325 GACGTGATCCTTGTA--TTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
8316 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAA
388 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
8381 ACCTGTAAAATCTCAAATGCACTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
8446 GCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTTCGCTCACCCCCCGCCCCCTAA
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG-TCGCTCACCCCCCCCCCCCCAA
* * * ***
8511 TCGTCGGAACCCCTAT---ACC-GTC-GG--TT-A-GGTTCTCCGACGATGGTGCCCC-GATTGA
582 TCGTCGGAACCCCTATGCCGCCGGTCAGGTCTTGACGATGCTCCGACGATGGTGCCCCGGACAAA
* * * * * *
8566 AAAAAATGCAGCACCAGCAAATGCCCGAGGCCAACATGTGCACCCACAACCCCCGGT-TCGGTCC
647 AAAAAATACGGCACCAGCACATG-CCGAGCCCAACATGTGCACCCACAACCCCCGCTCT-AGTCC
* * *
8630 GATGTTACACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTGAA
710 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG-CT-A-T---
*
8695 CCCACGAAACAAGTGTGCGGGCGCTCAGCCAGCCAAAGGGGCAGGATGCGCAAGCCAGGGATCGA
769 --CACG--AC-A--GTGCAGGCGCTCAGCCAGCCAAAGGGGCAGGATGCGCAAGCCAGGGATCGA
* * *
8760 CTGGGTCCCCCCCTATGTGTTACCGATCCTGCTGCCAAAACCCTCGGTCCGA
827 CTGGGTCCCCCCCTACGTGTTACCGATCCTGCTACCAAAACCCTCAGTCCGA
* * * *
8812 T-TCGATCTTAGACTGGGAATGAAATCCGTATACCTAAGCCAACCCACGAAACGAGCGGGCGGGC
1 TCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGC
* * * *
8876 GGGCACTACTCCGACCAGAGAGACGGGATGTGCATGCTGTGTATCGATAGGGTGGTAGGTGGGTT
65 GGGCACTACT-CGACCAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTT
*
8941 TAGGCACAT-TTCATA-TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGG
129 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
9004 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAACACGACTCGTTTTCTAATTTTCATGAATTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * ** *
9069 AAACTTTTTATGGTTTGGGATTTTTTTGAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGT
259 AAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
*
9134 AGACGTGATCCTTGTATTTTTGTTGGCTTGCAAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGC--AAAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * * *
9199 CAGAATTTTTTGATCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGGCTACTGGCAGCA
387 CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
9264 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
452 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
9329 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCTCACCCCCCCACCCCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGCTCACCCCCCC-CCCCCC
*
9394 AATCGTCAGAACCCCTATGCCGCCGGTCAGGTCTCTGACGATGCTCCGACGATGGTGCCCCGGAC
580 AATCGTCGGAACCCCTATGCCGCCGGTCAGGTCT-TGACGATGCTCCGACGATGGTGCCCCGGAC
* *
9459 AAAAAAAAAATACGGCACTAGCACATGCTCGAGCCCAACATGTGCACCCATAACCCCCGCTCTAG
644 -AAAAAAAAATACGGCACCAGCACATGC-CGAGCCCAACATGTGCACCCACAACCCCCGCTCTAG
9524 TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCT-T-A-
707 TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTATCAC
* * * * *
9586 G-C-GTGCAGGCGTTCAGCCGGCCAGAGGGGCAGGATGTGCAAGCCAGGGATCG-GTCGGGT-CC
772 GACAGTGCAGGCGCTCAGCCAGCCAAAGGGGCAGGATGCGCAAGCCAGGGATCGACT-GGGTCCC
* * * * **
9647 CCCCTGCGT-TCTATCGATCCTGTTATCGTAACCCTCAGTCCGA
836 CCCCTACGTGT-TACCGATCCTGCTACCAAAACCCTCAGTCCGA
* * *
9690 TCTGATCTTAGACTAGGAATGAACTCCATATGCCCAAGCCAACCGACGAAACGAACGGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCG
* *
9755 GGCACTACATCGGCCAGAGAGACGGGATGCACAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTAC-TCGACCAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTT
9820 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
9885 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* *
9950 AACTTTTGACGGTTCAGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
260 AACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
10015 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAATATTCAGCTAAAAACTCAAAGTGTACAG
325 GACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
* *
10080 GATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
10145 CTGTAAAATCTCAAATGCTCTTT-ATGAGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGA
455 CTGTAAAATCTCAAATGCTCTTTAAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
10209 CCAATATAAGGGCCAAGTACTAG----CA-C-C-CATCA---CGCACACCCCCTGCCCCCCCAAT
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCGCTCACCCCC-CCCCCCCCAAT
* * * * * * *
10264 CCTCGGAACCCCAATGCCGTCGGTCAGGTTCTTTGACGATGCTCC-AGCGATGGTTCCTCGGGCG
583 CGTCGGAACCCCTATGCCGCCGGTCAGG-TC-TTGACGATGCTCCGA-CGATGGTGCCCCGGACA
* * * * * *
10328 AAAAAAAATACGGCTCCAACACATGCCTGAGCCCAACATGTGCACGCGCAACCCTCGCTC-CGAT
645 AAAAAAAATACGGCACCAGCACATGCC-GAGCCCAACATGTGCACCCACAACCCCCGCTCTAG-T
*
10392 CCGATCTTACACTGGGAATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGC
708 CCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
10450 CAAGTCAACC
Statistics
Matches: 1469, Mismatches: 136, Indels: 85
0.87 0.08 0.05
Matches are distributed among these distances:
866 2 0.00
867 153 0.10
868 28 0.02
869 1 0.00
871 5 0.00
872 1 0.00
873 1 0.00
874 2 0.00
877 3 0.00
878 326 0.22
879 57 0.04
880 196 0.13
882 13 0.01
883 2 0.00
884 385 0.26
885 29 0.02
886 122 0.08
887 1 0.00
888 2 0.00
889 3 0.00
890 2 0.00
892 1 0.00
893 2 0.00
894 1 0.00
895 20 0.01
896 5 0.00
897 105 0.07
898 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (878 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCG
GGCACTACTCGACCAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
ACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCGCTCACCCCCCCCCCCCCAATCGT
CGGAACCCCTATGCCGCCGGTCAGGTCTTGACGATGCTCCGACGATGGTGCCCCGGACAAAAAAA
AATACGGCACCAGCACATGCCGAGCCCAACATGTGCACCCACAACCCCCGCTCTAGTCCGATCTT
ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTATCACGACAGTGCA
GGCGCTCAGCCAGCCAAAGGGGCAGGATGCGCAAGCCAGGGATCGACTGGGTCCCCCCCTACGTG
TTACCGATCCTGCTACCAAAACCCTCAGTCCGA
Found at i:10431 original size:26 final size:26
Alignment explanation
Indices: 10397--10447 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10387 CCGATCCGAT
10397 CTTACACTGGGAATGAACTCCGTATA
1 CTTACACTGGGAATGAACTCCGTATA
*
10423 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
10448 GCCAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATA
Found at i:14070 original size:6 final size:6
Alignment explanation
Indices: 14059--14133 Score: 66
Period size: 6 Copynumber: 12.2 Consensus size: 6
14049 TTTCTCTTCA
*
14059 TTTTAT TTTTAT TTTT-T TAATTTAT TTTTAT TTTGCAT TTTTACAT TTTTA-
1 TTTTAT TTTTAT TTTTAT T--TTTAT TTTTAT TTT-TAT TTTT--AT TTTTAT
*
14110 TTTTA- TTTTAT TTTTAT TATTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT T
14134 ATTTTATATA
Statistics
Matches: 59, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
5 12 0.20
6 31 0.53
7 8 0.14
8 8 0.14
ACGTcount: A:0.20, C:0.03, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:14087 original size:25 final size:25
Alignment explanation
Indices: 14059--14184 Score: 71
Period size: 25 Copynumber: 4.8 Consensus size: 25
14049 TTTCTCTTCA
14059 TTTTATTTTTATTTTTTTAATTTAT
1 TTTTATTTTTATTTTTTTAATTTAT
* *
14084 TTTTATTTTGCA--TTTTTACATTTTT
1 TTTTATTTT-TATTTTTTTA-ATTTAT
*
14109 ATTTTA-TTTTATTTTTATTATTATTAT
1 -TTTTATTTTTATTTTT-TTAAT-TTAT
**
14136 TTTATATATGTATATATATTTTTTCCTTT-T
1 TTT-TAT-T-T-T-TAT-TTTTTTAATTTAT
*
14166 TTTTATTATTATTTTTTTA
1 TTTTATTTTTATTTTTTTA
14185 GGGATTTATG
Statistics
Matches: 78, Mismatches: 9, Indels: 29
0.67 0.08 0.25
Matches are distributed among these distances:
24 13 0.17
25 20 0.26
26 14 0.18
27 8 0.10
28 1 0.01
29 4 0.05
30 5 0.06
31 3 0.04
32 6 0.08
33 4 0.05
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (25 bp):
TTTTATTTTTATTTTTTTAATTTAT
Found at i:14099 original size:32 final size:31
Alignment explanation
Indices: 14063--14123 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
14053 TCTTCATTTT
**
14063 ATTTTTATTTTTTTAATTTATTTTTATTTTGC
1 ATTTTTACATTTTTAATTTA-TTTTATTTTGC
*
14095 ATTTTTACATTTTTATTTTATTTTATTTT
1 ATTTTTACATTTTTAATTTATTTTATTTT
14124 TATTATTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 9 0.35
32 17 0.65
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.75
Consensus pattern (31 bp):
ATTTTTACATTTTTAATTTATTTTATTTTGC
Found at i:14222 original size:20 final size:17
Alignment explanation
Indices: 14197--14240 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 17
14187 GATTTATGTA
14197 TTTATTAATATGTATATAT
1 TTTATTAATAT-TAT-TAT
*
14216 CTTTATTATTATTATTAT
1 -TTTATTAATATTATTAT
14234 TTTATTA
1 TTTATTA
14241 TTTTTTTCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 7 0.30
18 3 0.13
19 3 0.13
20 10 0.43
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTATTAATATTATTAT
Found at i:14310 original size:12 final size:12
Alignment explanation
Indices: 14276--14316 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
14266 ATTTATGTAA
14276 TTATCTGTT-AT
1 TTATCTGTTAAT
14287 TTAAT-T-TTAAT
1 TT-ATCTGTTAAT
14298 TTATCTGTTAAT
1 TTATCTGTTAAT
14310 TTATCTG
1 TTATCTG
14317 ATTTATTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 4 0.15
11 8 0.31
12 14 0.54
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.61
Consensus pattern (12 bp):
TTATCTGTTAAT
Found at i:14342 original size:19 final size:20
Alignment explanation
Indices: 14318--14363 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
14308 ATTTATCTGA
*
14318 TTTATTTTCGTTTGA-TTTT
1 TTTATTTTCATTTGATTTTT
* *
14337 TTTATTTTTATTTTATTTTT
1 TTTATTTTCATTTGATTTTT
14357 TTTATTT
1 TTTATTT
14364 ATCTGACTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.80
Consensus pattern (20 bp):
TTTATTTTCATTTGATTTTT
Found at i:15256 original size:5 final size:5
Alignment explanation
Indices: 15217--15299 Score: 63
Period size: 5 Copynumber: 17.6 Consensus size: 5
15207 TCTTTTTCTA
* **
15217 TTTAT TTT-T TTTAC TTTCC TTTA- TTT-T TTTA- TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
*
15263 TTT-T TTCT-T TTCACT TTTAT TTTAT TTTAT TTT-T TTT
1 TTTAT TT-TAT TTTA-T TTTAT TTTAT TTTAT TTTAT TTT
15300 CCTCTAAAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
4 21 0.32
5 41 0.62
6 4 0.06
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:15541 original size:117 final size:119
Alignment explanation
Indices: 15296--15602 Score: 440
Period size: 117 Copynumber: 2.5 Consensus size: 119
15286 ATTTTATTTT
* * *
15296 TTTTCCTCTAAAAAT-AAAATTTCAAAAAAAGGATTTTTGAGGAAAGGTTGAAAGTATCAATTTT
1 TTTTCCT-TGAAAATCAAAATTTCCAAAAAA-TATTTTTGAGGAAAGGTTGAAAGTATCAATTTT
15360 CCTTAAAAATAAAATTTAAAAAAAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAA
64 CCTTAAAAATAAAATTT---AAAAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAA
* * * *
15419 TTTTCCTTGAAAATCAAAGTTTCC-AAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTCC
1 TTTTCCTTGAAAATCAAAATTTCCAAAAAATATTTTTGAGGAAAGGTTGAAAGTATCAATTTTCC
* *
15483 TTAAAAATAAAATTT-CAAAAAAGGTTTTTTTTAGGAAAAGTTGAAAGTATCAA
66 TTAAAAATAAAATTTAAAAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAA
*
15536 TTTTCCTTGAAAATCAAAATTTCCAAAAAAATATTTCTTGGGGAAAGGTTGAAAGTATCAATTTT
1 TTTTCCTTGAAAATCAAAATTTCC-AAAAAATATTT-TTGAGGAAAGGTTGAAAGTATCAATTTT
15601 CC
64 CC
15603 CTGTACAAGA
Statistics
Matches: 166, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
117 59 0.36
119 10 0.06
120 26 0.16
121 46 0.28
122 11 0.07
123 14 0.08
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.35
Consensus pattern (119 bp):
TTTTCCTTGAAAATCAAAATTTCCAAAAAATATTTTTGAGGAAAGGTTGAAAGTATCAATTTTCC
TTAAAAATAAAATTTAAAAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAA
Found at i:15542 original size:59 final size:59
Alignment explanation
Indices: 15296--15602 Score: 361
Period size: 59 Copynumber: 5.1 Consensus size: 59
15286 ATTTTATTTT
* *
15296 TTTTCCTCTAAAAATAAAATTTCAAAAAAAGG-ATTTTTGAGGAAAGGTTGAAAGTATCAA
1 TTTTCCT-TAAAAATAAAATTTC-AAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAA
*
15356 TTTTCCTTAAAAATAAAATTTAAAAAAAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAA
1 TTTTCCTTAAAAATAAAATTT----CAAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAA
* * * * * *
15419 TTTTCCTTGAAAATCAAAGTTTCCAAAAA--TATTTTTAAGAAAAAGTTGAAAGTATCAA
1 TTTTCCTTAAAAAT-AAAATTTCAAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAA
*
15477 TTTTCCTTAAAAATAAAATTTCAAAAAAGGTTTTTTTTAGGAAAAGTTGAAAGTATCAA
1 TTTTCCTTAAAAATAAAATTTCAAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAA
* * * * *
15536 TTTTCCTTGAAAATCAAAATTTCCAAAAAA-ATATTTCTTGGGGAAAGGTTGAAAGTATCAA
1 TTTTCCTTAAAAAT-AAAATTT-CAAAAAAGGT-TTTTTTGAGGAAAAGTTGAAAGTATCAA
15597 TTTTCC
1 TTTTCC
15603 CTGTACAAGA
Statistics
Matches: 214, Mismatches: 22, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
57 12 0.06
58 39 0.18
59 53 0.25
60 20 0.09
61 37 0.17
62 8 0.04
63 39 0.18
64 6 0.03
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.35
Consensus pattern (59 bp):
TTTTCCTTAAAAATAAAATTTCAAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAA
Found at i:21462 original size:26 final size:26
Alignment explanation
Indices: 21426--21504 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
21416 CCGATTCAAT
* *
21426 CTTACACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21452 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21478 CTTGGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21504 C
1 C
21505 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23500 original size:898 final size:895
Alignment explanation
Indices: 19770--24543 Score: 6076
Period size: 897 Copynumber: 5.3 Consensus size: 895
19760 CCTGTGACAC
* * *** *
19770 CTGCGTGCTACCGATCCTACTACTGTAACCC-TCAATCTGGTCTGATCTTAGACTAGGAATGAAC
1 CTGCGTGCTACCGATCCTACTACCGCAACCCTTGGTTC-GATCTGATCTTAGACTAGGAATGAAC
* * * * * *
19834 TCCGTATGCCTAAGCCAACTGACAAAACGAGCGGGAGGGCGGGTACTATGTCGGCCAGAGAGGCG
65 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
* *
19899 GGATGCGCAAGTCGTGGATCGATAGGGT-GTAGGTGGGTTTACGCACATCTTCATATTTCTGCCA
130 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* * *
19963 CGCCAATTCCATTTTTATGGCTTGTAGATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
195 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * *
20028 CATGGCAAGACGACACGTTTTCTATTTTTCACAATTTTTGAAACTTTTTATGGTTCAGGATTTTT
260 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * *
20093 TTAAAGTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTG
325 TTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* *
20158 GTATGCACAAAACAATTCAGCTATAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
390 GCATGCACAAAAAAATTCAGCTA-AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* *
20223 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCCTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
20288 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCA
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * * * * *
20353 TCCATCGCACATCTTGGGTGCACACCCCCTGCCCCCCCAATTGTCGGATCCCCCAATGCCACCGG
584 CCCATCGCACATCATGTGCGCACACCCCCCG-CCCCCCAATCGCCGGA-ACCCCAATGTCACCGG
* * *
20418 TCAGGTTCTCTGATGATGCTCCGGCAATGGTGCCCC-GGTAAAAAAAAATGCGACACCAGCACAT
647 TCAGGTTCTCTGATGATGCTCCGGCGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACAT
* * * * * * * * * **
20482 ACACGAGCCTAACATGTGCACTCGTAACCCTCGATC-CAGTTCGATTTTACACTGGGAATG-ACA
712 GCCCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCGGA-TCCGATCCTACACTGGGAATGAAC-
* * ** *
20545 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGG
775 TCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGG
* * * * * *
20610 CGCTCAGTCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTGGGGTCCCCCT
840 CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCA
** * * * ** ** *
20666 CTTTGTGCTGCCGATCCTGCTACCGTAACCCTCAGTTCGATCCAATCTTTA-ACTGGGAATGAAC
1 CTGCGTGCTACCGATCCTACTACCGCAACCCTTGGTTCGATCTGATC-TTAGACTAGGAATGAAC
* ** * * * *
20730 TCCGTATGCCTAAGCAAAGTGACGAAACGAGCGGACGGGTGGGCACTATGCCGGCCAGAGAGGCA
65 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
* * ***
20795 GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGAGTTTTCACACATCTTCATATTTCTGCCA
130 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* * * *
20860 TGCCCATGCCATTTTTATGGTTTGTAAATACATACAATGGTCTCTTAAGCCTTCATGTGAAGTTT
195 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
20925 CATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTCTT
260 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * * * *
20990 TTAAAATATTTTCA-AAAGGGGTTTTAGCCCCAAACTTGGTAGACATGATCCTTATTTTTTTTTT
325 TTAAAATTTTTTCAGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
*
21054 GGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
389 GGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* *
21119 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTT
453 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
21184 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
518 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * **
21249 ACCCATCGCACATCATATGCGCATACCCCCCCACCCCCCTAATCGCCAGAACCCCAATGCCGTCG
583 ACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCC-AATCGCCGGAACCCCAATGTCACCG
* * ** * ** * *
21314 GACAGGTT-TTTCGATGATGCTAGGGGTGATGGTGCTTCGGGTGAAAAAAAATGCATG-ACAAGC
646 GTCAGGTTCTCT-GATGATGCT-CCGGCGATGGTGCCCCGGGTGAAAAAAAATGC-GGCACCAGC
* * * * * * *
21377 ACATGCCCGAGCCTAGCATGTGCATCCGTAACCCTCGGTCCGATTCAATCTTACACTGGGAATGA
708 ACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCGGATCCGATCCTACACTGGGAATGA
**
21442 ACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCTTGGACTGGGAATGGACTCCGTATGCCT
773 ACTCCATATGCTTAGATTGGGAATGAACTCCGTATGC-----CT----A---A----G--T--C-
* * ** * * * * *
21507 AAGTCAACCCATGAAATGAGCATGCGGGCAATCAACCAGCCAGTGGGGCAAGATACGCAAG-CTG
817 AA-CCAA--C--GAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTC-G
* * ** *
21571 AGGATCTG-CCAAGTCCCTC-
876 GGGATC-GATCGGGTCCCCCA
* * * * ** * *
21590 CTGCATGCTACTGATCCTGCTACCGTAACCCTT-AATCTAGTCCGATCTTAGACT-GGCAATGAA
1 CTGCGTGCTACCGATCCTACTACCGCAACCCTTGGTTCGA-TCTGATCTTAGACTAGG-AATGAA
* * * *
21653 CTCCGTATGCCTAAGCCAACCGACGAAATGA----GCGGGCGGGCACTACACTGGCCAGTGAGGC
64 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
* * * *
21714 TGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACC
129 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
*
21779 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGCAGTT
194 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* **
21844 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTCAAGATTTT
259 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* * * *
21909 TTTAATATTTTTGT-AGAAGGATTTTTGGCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTTT
324 TTTAAAATTTTT-TCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
* *
21973 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGTAGTGTACAGGATTTTGTGATCATTTGAAAAA
388 TGGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
*
22038 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTT
452 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
22103 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAG
517 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * * *
22168 CACCCATAGCACATCATGTGCACACACCCCCCG-CCCCCTATCGTCAGAACCCCAATGTCGCCTG
582 CACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGTCACCGG
* * * * * *
22232 TCAGGTTCTCCGGTGATACTCCGACGATGGTGCCCCGGGTG--AAAAAATGCGGCACAACCACAT
647 TCAGGTTCTCTGATGATGCTCCGGCGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACAT
* * *
22295 GCCCGAGCCCAGCATGTGCACTCGTAACCCTTGGTCTGATCTGATCCTACACTGGGAATGAACTC
712 GCCCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCGGATCCGATCCTACACTGGGAATGAACTC
*
22360 CATATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCG
777 CATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCG
* * *
22425 CTCAGCTGGCCAGAGGTGCAGGATGCGCAAGTCGGGGATCGATAGGGTCCCCCA
842 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCA
* * * * * * * *
22479 TTACGTGCTACCGGTCCTACTGCCACAACCCTCGATCCGATCTGATCTTAGA-TAGGGAATGAAC
1 CTGCGTGCTACCGATCCTACTACCGCAACCCTTGGTTCGATCTGATCTTAGACTA-GGAATGAAC
* * * **
22543 TCCATATGCCTAAGCTAACCGATGAAACGAGCGGGTAGGCGGGCACTACGCCGGCCAGAGAGGCG
65 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
*
22608 GGATGCGCAAGCCCTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
130 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
22673 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCATGTGAAGTTT
195 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* *
22738 CATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTT
260 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
*
22803 TTAAAATTTTTTTCAGAAAGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTTTT
325 TTAAAA-TTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
* * *
22868 GGCATGCAAAAAAAAATTCAGCTGAAAACTAGAAGTGAACAGGATTTTGTGACCATTTGAAAAAA
389 GGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
*
22933 GTGTCCCCACTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
453 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
22998 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGC
518 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
23063 ACCCATCGCACATCATGTGCGTACACCCCCCGACCCCCCAATTGCCGGAACCCCAATGTCACAGC
583 ACCCATCGCACATCATGTGCGCACACCCCCCG-CCCCCCAATCGCCGGAACCCCAATGTCACCGG
* * * * * *
23128 TCAGGTTCTCTGACGATGCCCCGGCAATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACTT
647 TCAGGTTCTCTGATGATGCTCCGGCGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACAT
* **
23193 GCCCGAGCCCAACATGTGCACCCACAACCCTTGGTCGGATCCGATCCTACACTGGGAATGAACTC
712 GCCCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCGGATCCGATCCTACACTGGGAATGAACTC
* *
23258 CGTATCCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCG
777 CATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCG
* * *
23323 CTCAACCGGCCTGAGGGGCAGGATGCGCAAGTTGGGGATCGATCGGGTCCCCCA
842 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCA
* * *
23377 CTGCATGCTACCGATCCTACTACCACAACCCTTGGTTCGGTCTGATCTTAGACTAGGAATGAACT
1 CTGCGTGCTACCGATCCTACTACCGCAACCCTTGGTTCGATCTGATCTTAGACTAGGAATGAACT
* *
23442 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTATGCCCGCCAGAGAGGCGG
66 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
** *
23507 GATGTACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGT
131 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
*
23572 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTC
196 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* *
23637 ATGGCAAGATGACTCGTTTTCTATTTTTCA-GATTTTTGAAACTTTTTACGGTTTGGGATTTTTT
261 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * *
23701 TAAAATTTTTTCAG-AAGGGATTTTGGCCCCAAACTTCGTAGACATGATCCTTGTA-TTTTTTTG
326 TAAAATTTTTTCAGAAAGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
*
23764 GCATGCACAAAAAATTTCAGCTAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGT
390 GCATGCACAAAAAAATTCAGCTAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
* * * *
23828 ATCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACTTGCAAAATCTCAAATGCTCTTTAA
455 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
23893 GGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGACAATA-AAGGGCCAAGTACCAGCAC
520 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
23957 CCATCACACATCATGTGCGCACACCCCCCGTCCCCCAATCACTGGAACCCCCAAT-TCCGCCGGT
585 CCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGCCGGAA-CCCCAATGT-CACCGGT
* * * * ** *
24021 CAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCTGACGAAAAAAAATACGGCACCAGCACATG
648 CAGGTTCTCTGATGATGCTCCGGCGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATG
** *
24086 CCCTTGCCCAGCATGTGCACCTGTAACCC-T--T-GG-TCCGA---T-C-C---G-AT---CT--
713 CCCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCGGATCCGATCCTACACTGGGAATGAACTCC
* *
24132 -TA--C----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAATGAGCGTGCGGGCGC
778 ATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCGC
* *
24190 TCAGCCGGTCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCA
843 TCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCA
* * *
24243 CTGCGTGCTACCGATCCTACTGCTGCAACCCTTGGTTTGATCTGATCTTAGACTAGGAATGAACT
1 CTGCGTGCTACCGATCCTACTACCGCAACCCTTGGTTCGATCTGATCTTAGACTAGGAATGAACT
* * * * * * * *
24308 CTGTATGCCTAAGCCAATCGATGAAATGAGCAGGTGGGCAGGCACTACGTCGGCCAGAGAGGCGG
66 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* * *
24373 GATGTGCGAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
131 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
* *
24438 GCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCCTCATGTGAAGTTTC
196 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
*
24503 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
261 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
24544 CTT
Statistics
Matches: 3399, Mismatches: 410, Indels: 167
0.85 0.10 0.04
Matches are distributed among these distances:
866 367 0.11
867 10 0.00
870 1 0.00
872 2 0.00
875 2 0.00
878 2 0.00
879 1 0.00
882 1 0.00
883 1 0.00
884 1 0.00
887 6 0.00
888 54 0.02
889 69 0.02
890 6 0.00
891 15 0.00
892 141 0.04
893 326 0.10
894 298 0.09
895 32 0.01
896 230 0.07
897 480 0.14
898 476 0.14
899 106 0.03
900 3 0.00
902 1 0.00
904 2 0.00
905 1 0.00
908 1 0.00
909 2 0.00
911 1 0.00
913 1 0.00
914 104 0.03
915 1 0.00
916 15 0.00
917 35 0.01
918 6 0.00
919 7 0.00
920 459 0.14
921 5 0.00
923 9 0.00
924 70 0.02
925 48 0.01
926 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CTGCGTGCTACCGATCCTACTACCGCAACCCTTGGTTCGATCTGATCTTAGACTAGGAATGAACT
CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
TAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
CATGCACAAAAAAATTCAGCTAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGTCACCGGTCAG
GTTCTCTGATGATGCTCCGGCGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCC
GAGCCCAGCATGTGCACCCGTAACCCTTGGTCGGATCCGATCCTACACTGGGAATGAACTCCATA
TGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCGCTCA
GCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCA
Done.