Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 104 of 125
Found at i:20586809 original size:26 final size:26
Alignment explanation
Indices: 20586759--20586811 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20586749 GTTGACTTAG
* *
20586759 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGGTCATTCCATATCTAA
20586785 GCATACGGAGGTCATTTCCA-ATCTAA
1 GCATACGGAGGTCA-TTCCATATCTAA
20586811 G
1 G
20586812 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCATATCTAA
Found at i:20587903 original size:159 final size:158
Alignment explanation
Indices: 20587519--20587912 Score: 411
Period size: 159 Copynumber: 2.5 Consensus size: 158
20587509 CCCAGTCTAA
* * * * * *
20587519 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAAGGTTGCGGTAGCACGATCGACA
1 GCATAAGGAGTTCATTTCCAGTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGACA
* * * ** * * * *
20587584 GCACGTAGGAGGGACTGGGTCGATTCTCGGCTTGCGCATTCTGCCTCTCTGGCCCGCTGAGTGCC
66 GCACGCAGGGGGGACCGGACCGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCCGCTCAGCGCC
* * *
20587649 CGCACACCTGTTTCATGGGTTGGCTTAG
131 CGCACACCTATTTCATGGGATGACTTAG
* ** * *
20587677 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGCAGCAGGA-CTA
1 GCATAAGGAGTTCATTTCCA-GTCTAAG-ATCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGA
* * **
20587739 GCAGCACGCAGAGGGGGACCGGACCGATCCTCGGCTTGCGTATTTTACCTCTCTGGCTTGCTCAG
64 -CAGCACGCAG-GGGGGACCGGACCGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCCGCTCAG
* *
20587804 CGCCCG-A-ACGCTCATTTCGTGGGATGATTTAG
127 CGCCCGCACAC-CT-ATTTCATGGGATGACTTAG
* *
20587836 GCATAAGGAGTTCATTTCCAGTCTAAGATCAGACAGGATCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATAAGGAGTTCATTTCCAGTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGACA
*
20587901 GCATGCAGGGGG
66 GCACGCAGGGGG
20587913 ATCGGGTCGG
Statistics
Matches: 191, Mismatches: 36, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
157 8 0.04
158 60 0.31
159 116 0.61
160 7 0.04
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATAAGGAGTTCATTTCCAGTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGACCGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCCGCTCAGCGCC
CGCACACCTATTTCATGGGATGACTTAG
Found at i:20588023 original size:26 final size:26
Alignment explanation
Indices: 20587994--20588044 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20587984 TGGCTTAGGG
20587994 ATACGGAGTTCATTC-CATGTCTAAGC
1 ATACGGAGTTCATTCTCA-GTCTAAGC
20588020 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATTCTCAGTCTAAG
20588045 ATCAGACTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCTCAGTCTAAGC
Found at i:20588568 original size:25 final size:26
Alignment explanation
Indices: 20588530--20588581 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
20588520 GTTGGCTTAG
20588530 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20588556 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20588581 G
1 G
20588582 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20589299 original size:26 final size:26
Alignment explanation
Indices: 20589262--20589314 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20589252 GATGACTTAG
20589262 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20589288 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
20589314 G
1 G
20589315 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20589643 original size:26 final size:26
Alignment explanation
Indices: 20589606--20589658 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20589596 GTTGACTTAG
*
20589606 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20589632 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20589658 G
1 G
20589659 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20589850 original size:26 final size:26
Alignment explanation
Indices: 20589814--20589866 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20589804 GTTGACTTAG
20589814 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20589840 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20589866 G
1 G
20589867 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20590323 original size:158 final size:159
Alignment explanation
Indices: 20589840--20590332 Score: 525
Period size: 158 Copynumber: 3.1 Consensus size: 159
20589830 CCCAGTCTAA
* * * *
20589840 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCCGACCGAGGGTTACGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACA
* * * * *
20589905 GCACGTA-AGGGGGATCGAGCCGATCCCCGGCTTGCACATTGTGCCT-TTCCGACTGGCTGAGCG
66 GCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGGTCT-GCTGAGCG
* *
20589968 CCCACACGCCCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** ** * *
20589998 GCATAGGGAGTTCATT-CCATGTCTAAGGCCTA-ACCAGACCGAGGGTTGTGGTAACGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTACGACAGCAGGATCGA
* * * * * * *
20590061 CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCATGCGCATTATGCCTCTCCGATCGGCTCAGT
64 CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGGTCTGCTGAGC
* * * * ** *
20590126 GTCCGAATGCTCATTTCGTGGGTTGATTTTG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
20590157 GCATACGGAGTTCATTCCCAATC-ATAGATCAGATCAGACCGAGGGTTACGACAGCAGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTA-AGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGAC
* *
20590221 AGCACGCAGA-GGGGA-CTGGG-CTAGTCCCCGGCTTGCACATTCTGCCTCTTCGGTCTGCTGAG
65 AGCACGCAGAGGGGGATC-GGGCCGA-TCCCCGGCTTGCACATTATGCCTCTTCGGTCTGCTGAG
20590283 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
20590315 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20590333 ATGCCTAAGC
Statistics
Matches: 265, Mismatches: 61, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 137 0.52
159 116 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACA
GCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGGTCTGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20590393 original size:26 final size:26
Alignment explanation
Indices: 20590315--20590384 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
20590305 GTTGGCTTAG
20590315 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
20590341 GCATACGGAGTTCATTCTATGCCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
20590367 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20590385 CAGTCTAAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:20590519 original size:210 final size:210
Alignment explanation
Indices: 20590157--20590552 Score: 582
Period size: 210 Copynumber: 1.9 Consensus size: 210
20590147 GTTGATTTTG
*
20590157 GCATACGGAGTTCATTCCCAATCATAGATCAGATCAGACCGAGGGTTACGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAATCATAGATCAGATCAGACCGAGGGTTACGACAGCAGGATCGACA
* * * * *
20590222 GCACGCAGAGGGGACTGGGCTAGTCCCCGGCTTGCACATTCTGCCTCTTCGGTCTGCTGAGCGCC
66 GCACGCAGAGGGGACTGGGCCAATCCCCAGCTTACACATTCTACCTCTTCGGTCTGCTGAGCGCC
*
20590287 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGT
131 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGT
20590352 TCATTCTATGCCTAA
196 TCATTCTATGCCTAA
* * * * *
20590367 GCATACGGAGTTCATTCCCAGTC-TAAGATCGGATCGGACGGAGGGTTACGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCAT-AGATCAGATCAGACCGAGGGTTACGACAGCAGGATCGAC
* * * *
20590431 AGCACGTAGAGGGGA-TCGGGCCAATCCTCAGCTTACGCATTCTACCTCTTCTGT-TGGCTGAGC
65 AGCACGCAGAGGGGACT-GGGCCAATCCCCAGCTTACACATTCTACCTCTTCGGTCT-GCTGAGC
* *
20590494 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
128 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGC
20590553 CCCAGTCGGA
Statistics
Matches: 165, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
209 3 0.02
210 162 0.98
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (210 bp):
GCATACGGAGTTCATTCCCAATCATAGATCAGATCAGACCGAGGGTTACGACAGCAGGATCGACA
GCACGCAGAGGGGACTGGGCCAATCCCCAGCTTACACATTCTACCTCTTCGGTCTGCTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGT
TCATTCTATGCCTAA
Found at i:20590719 original size:26 final size:26
Alignment explanation
Indices: 20590683--20590735 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20590673 GTTGGCTTAG
*
20590683 GCATGTGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
20590709 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
20590735 G
1 G
20590736 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:20591191 original size:26 final size:26
Alignment explanation
Indices: 20591138--20591194 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
20591128 CGCTTTCTAA
* **
20591138 AAAAATTTTAAAAAATCACGAACCAT
1 AAAAAGTTTAAAAAATCACGAAAAAT
* *
20591164 AAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAGTTTAAAAAATCACGAAAAAT
20591190 AAAAA
1 AAAAA
20591195 ACGGGTTGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.63, C:0.11, G:0.05, T:0.21
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCACGAAAAAT
Found at i:20596172 original size:26 final size:26
Alignment explanation
Indices: 20596123--20596175 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20596113 GGTGGCTTAG
*
20596123 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
20596149 GCATACGGTGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20596175 G
1 G
20596176 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20596698 original size:158 final size:158
Alignment explanation
Indices: 20596345--20596725 Score: 412
Period size: 158 Copynumber: 2.4 Consensus size: 158
20596335 CCCAGTCTAA
* * * *
20596345 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGATCAAAGGTTACGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * *
20596409 AGCACGCAAGAAGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGATTGAGCAC
65 AGCACGCAAGAAGGACCGAGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGACTCAGCAC
* * * *
20596474 CCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGAACACCCGTTTCATGGGCTGACTTAG
* * ** * * * *
20596503 GCACAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGGTCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGA
* ** ** *
20596566 CAGCATGCAGAGGGGGACCGAG-CTGATCGTCGGCTTGCGCATTATGCCTCTCCGGTC-ACTCAG
64 CAGCACGCA-AGAAGGACCGAGTC-GATCCCCGGCTTACGCATTATGCCTCTCCGGTCGACTCAG
* *
20596629 CGCCCGAACACTCGTTTCATGGGCTGACTTAG
127 CACCCGAACACCCGTTTCATGGGCTGACTTAG
* * *
20596661 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
20596726 ACACATAAAG
Statistics
Matches: 178, Mismatches: 38, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.03
158 128 0.72
159 43 0.24
160 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAAGAAGGACCGAGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGACTCAGCACC
CGAACACCCGTTTCATGGGCTGACTTAG
Found at i:20596738 original size:158 final size:158
Alignment explanation
Indices: 20596345--20596845 Score: 390
Period size: 158 Copynumber: 3.2 Consensus size: 158
20596335 CCCAGTCTAA
* * *
20596345 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGA-TCAAAGGTTACGACAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACT-GAGGGTTGCGACAGCAGGATCGA
** * * *
20596408 CAGCACGC-AAGAAGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGATTGAGC
64 CAGCAC-CAAAGGGGGACCGAGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGACTCAGC
* * * *
20596472 ACCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 ACCCGAACACCCGTTTCATGGGCTGACTTAG
* * ** * * * * *
20596503 GCACAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGGTCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGA
* * ** *
20596566 CAGCATGCAGAGGGGGACCGAG-CTGATCGTCGGCTTGCGCATTATGCCTCTCCGGTC-ACTCAG
64 CAGCA-CCAAAGGGGGACCGAGTC-GATCCCCGGCTTACGCATTATGCCTCTCCGGTCGACTCAG
* *
20596629 CGCCCGAACACTCGTTTCATGGGCTGACTTAG
127 CACCCGAACACCCGTTTCATGGGCTGACTTAG
* *
20596661 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
* * * * * * ** * * * * ** * *
20596726 ACA-CATAAAGGGGACCGGGTCGGTCCCTGACTTGTGCATTCTACCTCTACGATCGGTTGAGCGC
66 GCACCA-AAGGGGGACCGAGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGACTCAGCAC
* * * * * *
20596790 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGAACACCCGTTTCATGGGCTGACTTAG
20596819 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
20596846 CGTACGGAGT
Statistics
Matches: 269, Mismatches: 61, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 42 0.16
158 181 0.67
159 43 0.16
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
GCACCAAAGGGGGACCGAGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGACTCAGCACC
CGAACACCCGTTTCATGGGCTGACTTAG
Found at i:20596858 original size:26 final size:26
Alignment explanation
Indices: 20596819--20596897 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
20596809 GTTGGCTTAG
20596819 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
20596845 GCGTACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
20596871 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20596897 G
1 G
20596898 ATCGGATCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20597958 original size:26 final size:26
Alignment explanation
Indices: 20597922--20597972 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20597912 GTTGACTTTG
20597922 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20597948 GCATACGGAGTTCATTCTCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
20597973 GGATAGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20598312 original size:159 final size:157
Alignment explanation
Indices: 20597948--20598316 Score: 372
Period size: 159 Copynumber: 2.3 Consensus size: 157
20597938 CCCAGTCTAA
* * ** *
20597948 GCATACGGAGTTCATTCTCAGTCTAGGAT-AGGACCGGACTGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGAC-GAGGGTTGTGGCAGCAGGATCGAC
* * ** * *
20598012 AGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTACCTCTCCGATCGGCTAAGTGC
64 AGCACACAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTATACCTCTCCGATCGGCTAAGCGC
*
20598077 CCGTACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGAACGCCCGTTTCGTGGGTTGGCTTAG
* * ** * * *
20598106 GCACAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGAACCGATGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGA-CGAGGGTTGTGGCAGCAGGATC-G
* ** * *
20598168 GCAGCACACAGAGGGGGACCGGG-CTGATCCCCGGCTTACGCATTATGGCTTTCC-AGTCGGCTC
62 ACAGCACACAG-GGGGGACCGGGTC-GATCCCCGGCTTACGCATTATACCTCTCCGA-TCGGCTA
*
20598231 AGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
124 AGCGCCCGAACGCCCGTTTCGTGGGTTGGCTTAG
*
20598265 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGTGGC
20598317 TGTAGGACCA
Statistics
Matches: 168, Mismatches: 33, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
157 3 0.02
158 53 0.32
159 108 0.64
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGTGGCAGCAGGATCGACAG
CACACAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTATACCTCTCCGATCGGCTAAGCGCCC
GAACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:20598676 original size:399 final size:400
Alignment explanation
Indices: 20597935--20598690 Score: 1081
Period size: 399 Copynumber: 1.9 Consensus size: 400
20597925 TACGGAGTTC
* * * * *
20597935 ATCCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAGGATAGGACCGGACTGAGGGTTACGGT
1 ATCCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATAGGACCAGACCGAGGGTTACAGT
* * ** *
20598000 AGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTACCTCTCCGA
66 AGCAGGATCGACAGCACGCAGGGGAGACCGAGTCGATCCCCAGCTTGAGCATTCTACCTCTCCGA
* * *
20598065 TCGGCTAAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCT
131 CCGACTAAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCT
* * *
20598130 AAGCCCCAACCGAACCGATGGTTGTGGCAGCGGGACTGGCAGCACACAGAGGGGGACCGGGCTGA
196 AAGCCCCAACCGAACCGAGGGTTGTGGCAACGGGACTGGCAGCACACAGAAGGGGACCGGGCTGA
* * * *
20598195 TCCCCGGCTTACGCATTATGGCTTTCCAGTCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGG
261 TCCCCGGCTTACGCATTATGCCTCTCCAGTCGGCTCAGCGCCAGAACGCTCGTTTCGTGGGTTGA
20598260 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGTGGCTGTAGGA
326 CTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCTGTAGGA
20598324 CCAGCAGCAGG
390 CCAGCAGCAGG
**
20598335 ATCCCCAGTCTGTGCATACAGAGTTCATT-TCCAGTCTAAGATCA-GACCAGACCGAGGGTTACA
1 ATCCCCAGTCTAAGCATACAGAGTTCATTCT-CAGTCTAAGAT-AGGACCAGACCGAGGGTTACA
* * *
20598398 GTAGTAGGATCGACAGCAC-TAGGGGAGACCGAGTCGATCCCCAGCTTGAGCATTCTACCTCTTC
64 GTAGCAGGATCGACAGCACGCAGGGGAGACCGAGTCGATCCCCAGCTTGAGCATTCTACCTCTCC
* * * *
20598462 GACCGACTGAGTGCTCGCACGCCCGTTTCGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
129 GACCGACTAAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGT
* * * *
20598527 CTAAGCCCCAACCGGACCGAGGGTTGTGGCAACGGGACTGGCAGTACATAGAAGGGGATCGGG-T
194 CTAAGCCCCAACCGAACCGAGGGTTGTGGCAACGGGACTGGCAGCACACAGAAGGGGACCGGGCT
* * * * * *
20598591 CGATTCCCGGCTTGCGCATTCTTCCTCTCCAGTCGGCTGAGCGCCAGGACGCTCGTTTCGTGGGT
259 -GATCCCCGGCTTACGCATTATGCCTCTCCAGTCGGCTCAGCGCCAGAACGCTCGTTTCGTGGGT
*
20598656 TGACTTAGGCATATGGAGTTCATTCCATGTCTAAG
323 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
20598691 CATATGGATT
Statistics
Matches: 312, Mismatches: 40, Indels: 9
0.86 0.11 0.02
Matches are distributed among these distances:
398 4 0.01
399 237 0.76
400 70 0.22
401 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (400 bp):
ATCCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATAGGACCAGACCGAGGGTTACAGT
AGCAGGATCGACAGCACGCAGGGGAGACCGAGTCGATCCCCAGCTTGAGCATTCTACCTCTCCGA
CCGACTAAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCT
AAGCCCCAACCGAACCGAGGGTTGTGGCAACGGGACTGGCAGCACACAGAAGGGGACCGGGCTGA
TCCCCGGCTTACGCATTATGCCTCTCCAGTCGGCTCAGCGCCAGAACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCTGTAGGAC
CAGCAGCAGG
Found at i:20598703 original size:26 final size:26
Alignment explanation
Indices: 20598664--20598716 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20598654 GTTGACTTAG
20598664 GCATATGGAGTTCATTC-CATGTCTAA
1 GCATATGGAGTTCATTCTCA-GTCTAA
*
20598690 GCATATGGATTTCATTCTCAGTCTAA
1 GCATATGGAGTTCATTCTCAGTCTAA
20598716 G
1 G
20598717 AGTTTGAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (26 bp):
GCATATGGAGTTCATTCTCAGTCTAA
Found at i:20600043 original size:11 final size:11
Alignment explanation
Indices: 20600027--20600059 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
20600017 CCCGGGGCAC
20600027 CATCGTCGGAG
1 CATCGTCGGAG
20600038 CATCGTCGGAG
1 CATCGTCGGAG
20600049 CATCGTCGGAG
1 CATCGTCGGAG
20600060 AGCCTAATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:20600662 original size:26 final size:26
Alignment explanation
Indices: 20600626--20600678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20600616 GTTGACTTAG
*
20600626 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20600652 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20600678 G
1 G
20600679 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20602071 original size:26 final size:26
Alignment explanation
Indices: 20602041--20602093 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20602031 GTTGACTTAG
20602041 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20602067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20602093 G
1 G
20602094 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20602392 original size:156 final size:157
Alignment explanation
Indices: 20602067--20602398 Score: 380
Period size: 156 Copynumber: 2.1 Consensus size: 157
20602057 CCCAGTCTAA
* **
20602067 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTACGATAGCAGGATCGACA
* * * * * * * **
20602132 GCACGTAAAAAGGATCGGGTCGATCCTCGACTTACACATTATGCCTTTTCGATCGACTCAGCGTC
66 GCACG-AAAAAGGATCGGGCCAATCCTCGACTTACACATTATACCTCTCCAACCGACTCAGCACC
*
20602197 CGCACGCTCGCTTCGTGGGTTGACTTAG
130 CGCACGCTCGCTTCATGGGTTGACTTAG
* * * * * * *
20602225 GCATACAGAGTTCATTTCCAATCTAAGCTCAGACTGGACCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTACGATAGCAGGATCGACA
** * * * *
20602290 GCACG-GGAGGGA-CTGGGCCAATCCTCGACTTACGCATTCTACCTCTCCAACCGACTGAGCACC
66 GCACGAAAAAGGATC-GGGCCAATCCTCGACTTACACATTATACCTCTCCAACCGACTCAGCACC
* *
20602353 CGCACGCTCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGCTTCATGGGTTGACTTAG
20602381 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20602399 ATGTCTAACC
Statistics
Matches: 143, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
155 1 0.01
156 82 0.57
158 60 0.42
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTACGATAGCAGGATCGACA
GCACGAAAAAGGATCGGGCCAATCCTCGACTTACACATTATACCTCTCCAACCGACTCAGCACCC
GCACGCTCGCTTCATGGGTTGACTTAG
Found at i:20602608 original size:26 final size:26
Alignment explanation
Indices: 20602578--20602630 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20602568 GTTGGCTTAG
*
20602578 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20602604 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20602630 G
1 G
20602631 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20602716 original size:11 final size:11
Alignment explanation
Indices: 20602700--20602726 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
20602690 CCCAGGGCAC
20602700 CATCGTCGGAG
1 CATCGTCGGAG
20602711 CATCGTCGGAG
1 CATCGTCGGAG
20602722 CATCG
1 CATCG
20602727 CCAGAGAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:20615161 original size:26 final size:26
Alignment explanation
Indices: 20615116--20615168 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20615106 GTTGACTTAG
*
20615116 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAATCTAA
* **
20615142 GCATGCGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCAACCCCAATCTAA
20615168 G
1 G
20615169 ACTGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAATCTAA
Found at i:20615515 original size:159 final size:159
Alignment explanation
Indices: 20615352--20615644 Score: 347
Period size: 159 Copynumber: 1.8 Consensus size: 159
20615342 AGGTTGCAGC
* * *
20615352 AGTAGAACC-AGTAGCACGCAAAAGGGGACCGGGTCGATCCCCGGCTTACACATTATGCCTCTTC
1 AGTAGAACCGA-TAGCACGCAAAAGGGGACCGAGCCGATCCCCGGCTTACACATTATGCCTCTCC
** *
20615416 AGCTGACTCACCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-G
65 AGCCAACTCACCACCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATT-CCATG
20615480 TCTAAGATTGGATCGGATCAAGGGTTACGGT
129 TCTAAGATTGGATCGGATCAAGGGTTACGGT
* * *** * * * * * *
20615511 AGTAGGATCGATAGCACGCACTGGGGGATCGAGCCGATCCCTGGCTTGCCCATTCTGCCTCTCCG
1 AGTAGAACCGATAGCACGCAAAAGGGGACCGAGCCGATCCCCGGCTTACACATTATGCCTCTCCA
* * * * * *
20615576 GCCAACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGCCATATGGAGTTCATTCCATGTC
66 GCCAACTCACCACCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCATGTC
20615641 TAAG
131 TAAG
20615645 CATACGGGGT
Statistics
Matches: 109, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 3 0.03
159 105 0.96
160 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.24
Consensus pattern (159 bp):
AGTAGAACCGATAGCACGCAAAAGGGGACCGAGCCGATCCCCGGCTTACACATTATGCCTCTCCA
GCCAACTCACCACCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCATGTC
TAAGATTGGATCGGATCAAGGGTTACGGT
Found at i:20616047 original size:368 final size:355
Alignment explanation
Indices: 20615546--20616224 Score: 824
Period size: 368 Copynumber: 1.9 Consensus size: 355
20615536 GGATCGAGCC
* **
20615546 GATCCCTGGCTTGCCCATTCTGCCTCTCCGGCCAACTGAGCGCCCGTACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCCCATTCTGCCTCTCCGGCCAACTGAGCGCCCACACGCTCGTTTCGTGGGTT
* * * * * *
20615611 GGCTTAGCCATATGGAGTTCATTCCATGTCTAAGCATACGGGGTTCATTCCTAGTCTAAGATCGG
66 GACTTAGCCATACGAAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** *
20615676 ACTGGGCCGAGGGTTGCGGCAGAAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGGACCGGG
131 ACTGAACCGAGGGTT---GC---A-G--CAGCA--A-GATCGACAGCACACA-GGGGGGACCGGG
* * * * * *
20615741 CCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCC-AGTTGAGCGCCCG-CACGCTCGTTTCATG
183 CCAATCCCCGACTTGCGCATTCTACCTCTCCGACCGA-CTGAGC-ACCGACACGCCCATTTCATG
* *
20615804 GGTTGGCTTAGGCATACGAAGTTCATACCATGTCTAAGCCCGAGCCGGACCGAGGGTTGTGGCAG
246 GGTTGGCTTACGCATACGAAGTTCATACCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
20615869 CAAGACTGGCAGAGGGATCGGAAGCATACAGAGGGGGATCAAGTT
311 CAAGACTGGCAGAGGGATCGGAAGCATACAGAGGGGGATCAAGTT
* * * ** * *
20615914 GATCCCCGGCTTGCGCATTGTGCCTCTCTGGCCGGCTGAGCGCCCACATGCTTGTTTCGTGGGTT
1 GATCCCCGGCTTGCCCATTCTGCCTCTCCGGCCAACTGAGCGCCCACACGCTCGTTTCGTGGGTT
* * * *
20615979 GACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTTTAAGCTCG
66 GACTTAGCCATACGAAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
20616043 GACTGAACCGAGGGTTGCAGCAGCAAGATCGACAGCACACAGGGGGGATCGGGCCGATCCCTGAC
130 GACTGAACCGAGGGTTGCAGCAGCAAGATCGACAGCACACAGGGGGGACCGGGCCAATCCCCGAC
* *
20616108 TTGCGCATTCTACCTCTCCGATCGACTGAGCATCGACACGCCCATTTCATGGGTTGGCTTACGCA
195 TTGCGCATTCTACCTCTCCGACCGACTGAGCACCGACACGCCCATTTCATGGGTTGGCTTACGCA
* * * * *
20616173 TAGGGAGTTCATTCCGTGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGC
260 TACGAAGTTCATACCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC
20616225 GGGACTGGTA
Statistics
Matches: 267, Mismatches: 41, Indels: 19
0.82 0.13 0.06
Matches are distributed among these distances:
354 2 0.01
355 118 0.44
356 15 0.06
357 1 0.00
359 5 0.02
361 1 0.00
362 1 0.00
365 2 0.01
368 119 0.45
369 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (355 bp):
GATCCCCGGCTTGCCCATTCTGCCTCTCCGGCCAACTGAGCGCCCACACGCTCGTTTCGTGGGTT
GACTTAGCCATACGAAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACTGAACCGAGGGTTGCAGCAGCAAGATCGACAGCACACAGGGGGGACCGGGCCAATCCCCGACT
TGCGCATTCTACCTCTCCGACCGACTGAGCACCGACACGCCCATTTCATGGGTTGGCTTACGCAT
ACGAAGTTCATACCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACTGGCAGAGG
GATCGGAAGCATACAGAGGGGGATCAAGTT
Found at i:20616374 original size:159 final size:159
Alignment explanation
Indices: 20616209--20616503 Score: 342
Period size: 159 Copynumber: 1.9 Consensus size: 159
20616199 CCAGTCGGAC
* * ** ** *
20616209 CGAGGGTTGTGGCAGCGGGACTGGTAGCACGCAGAGG-GGGACTGGGCCGATCCCCGGCTTACGC
1 CGAGGGTTGTGGCAGCAGGACTGATAGCACGCAG-GGAAAGACCAGGCCGATCCCCAGCTTACGC
** * * * *
20616273 ATTAGGCCTCT-TCAGCCGGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTATGCATACGG
65 ATTAGAACTCTCT-AGCCGGCTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGG
20616337 AGTTCATTTCCAATCTAAGATCAGACCGAAT
129 AGTTCATTTCCAATCTAAGATCAGACCGAAT
* * * *
20616368 CGAGGGTTGTGGTAGCAGGATTGATAGCATGCAGGGAAAGACCAGGCCGATCCCCAGCTTGCGCA
1 CGAGGGTTGTGGCAGCAGGACTGATAGCACGCAGGGAAAGACCAGGCCGATCCCCAGCTTACGCA
** * ** * *
20616433 TTCTAACTCTCTGGTTGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAG
66 TTAGAACTCTCTAGCCGGCTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAG
20616498 TTCATT
131 TTCATT
20616504 CCATGTCTAA
Statistics
Matches: 110, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 2 0.02
159 107 0.97
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCAGGACTGATAGCACGCAGGGAAAGACCAGGCCGATCCCCAGCTTACGCA
TTAGAACTCTCTAGCCGGCTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAG
TTCATTTCCAATCTAAGATCAGACCGAAT
Found at i:20616518 original size:26 final size:26
Alignment explanation
Indices: 20616488--20616540 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20616478 GTTGGCTTAG
*
20616488 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20616514 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20616540 G
1 G
20616541 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20617260 original size:25 final size:26
Alignment explanation
Indices: 20617211--20617260 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
20617201 GTTGCCTTAG
*
20617211 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGGTCATCCCCAATCTAA
* *
20617237 GCATAC-GAGGTCATTCCCAGTCTA
1 GCATACAGAGGTCATCCCCAATCTA
20617261 TGATCGGACC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAATCTAA
Found at i:20617424 original size:26 final size:26
Alignment explanation
Indices: 20617394--20617446 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20617384 GCTGCCTTAG
*
20617394 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20617420 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20617446 G
1 G
20617447 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20618260 original size:158 final size:158
Alignment explanation
Indices: 20617800--20618300 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 158
20617790 CTCAGCGTAA
* * * * *
20617800 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCAAGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAGGATCAAC
* * * * * **
20617864 AGCACGCA-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTTTACCTCTCCGGGCGATTGAGCGC
65 AGCACGCAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
* * * *
20617928 CCGTATAGC-CGTTTCG-ATGGTTGGCTTAG
130 CTGCA-CGCTCGTTTCGTA-GGTTGACTTAG
** * * * ** * * * ** * *
20617957 GCATAGGGAGTTCATTCAATGTGTAAG-CCCCAGTCGGACAGAGGGTTGTGGTAGCAGGACCAGC
1 GCATACAGAGTTCATTCCATGTCTAAGATCGGA-TCAGACCGAGGGTTGCGACAGCAGGATCAAC
* * ** * * * * * *
20618021 AACACGCAGAGGGGGACCGTTTCAATCCCTGACTTGTGCATTATGCCTCTTCGGCCGGCTCAGCA
65 AGCACGCAG-GGGGGATCGAGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
*
20618086 CTCT-CACGCTCGTTTCGTAGGTTGACTTAT
129 C-CTGCACGCTCGTTTCGTAGGTTGACTTAG
*
20618116 GCATACAGAGTTCATTCCCA-GTCTAAGATTGGATCAGACCGAGGGTTGCGACAGCAGGATCAAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAGGATCAAC
** * *
20618180 AGCATACAGGGGGGATCGAGTCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGC
65 AGCACGCAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
*
20618245 CTGCACGCTCGTTTCGTGGGTT-AGCTTAG
130 CTGCACGCTCGTTTCGTAGGTTGA-CTTAG
20618274 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
20618301 CATACAGAGT
Statistics
Matches: 262, Mismatches: 70, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
156 4 0.02
157 54 0.21
158 92 0.35
159 107 0.41
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAGGATCAACA
GCACGCAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
TGCACGCTCGTTTCGTAGGTTGACTTAG
Found at i:20618322 original size:25 final size:26
Alignment explanation
Indices: 20618274--20618325 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20618264 GTTAGCTTAG
*
20618274 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTAATTCCATGTCTAA
20618300 GCATACAGAG-TAATTCCCA-GTCTAA
1 GCATACAGAGTTAATT-CCATGTCTAA
20618325 G
1 G
20618326 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCATGTCTAA
Found at i:20619043 original size:26 final size:26
Alignment explanation
Indices: 20619007--20619059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20618997 GTTGACTTAG
20619007 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
20619033 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20619059 G
1 G
20619060 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20619221 original size:26 final size:26
Alignment explanation
Indices: 20619191--20619243 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20619181 GTTGGCTTAG
20619191 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
20619217 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20619243 G
1 G
20619244 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20619943 original size:26 final size:26
Alignment explanation
Indices: 20619913--20619965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20619903 GTTGACTTAG
*
20619913 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20619939 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20619965 G
1 G
20619966 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20619994 original size:906 final size:913
Alignment explanation
Indices: 20618116--20620124 Score: 2827
Period size: 906 Copynumber: 2.2 Consensus size: 913
20618106 GTTGACTTAT
** * * *
20618116 GCATAC-AGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGACAGCAGGATCAAC
1 GCATACGA-AGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
** * * *
20618180 AGCATACAGGGGGGATCGAG-TCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCG
64 AGCACGCAGGGGGGATCGGGCT-GATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCG
* * *
20618244 CCTGCACGCTCGTTTCGTGGGTTAGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCATACAG
128 CCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCATACAG
*
20618308 AGTAATTCCCAGTCTAAGATTTTGAGCCATAGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
192 AGTAATTCCCAGTCTAAGATTTTGAGCCATAGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
* * * * * *
20618373 ATATTTTTTTCGCCTGGGGCACCATCGTTGGAGCATCACCGGAGCATCGTCGGAGAGCCTAATCG
257 ACATTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGGAGCA-CGTCCGAGAGCC-AAGCG
* * *
20618438 ATGGCATTGGGGGTTCCGGCAATTGCGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
320 A-GGCATTGGGGGTTCCGACAATTGCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGT
*
20618503 GCTGGTACTTGGCCCTTATATTAGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTT
384 GCTGGTACTTGGCCCTTATATTAGCCCCCTATCACTCATCAAACCTCGAGAACCCACACCCCCTT
* * ** *
20618568 AAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
449 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAAAAGGAACAC
* * *
20618633 TTTTTTCAAGCGGTCACAAAATCTTCTCCACTTCGAGTTTTAAGCTGAATTTTTTATGCATGACA
514 TTTTTTCAAACAGTCACAAAATCTTCTCCACTTCAAGTTTTAAGCTGAATTTTTTATGCATGACA
20618698 AAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTGTTAAA
579 AAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTGTTAAA
** * * *
20618763 AACCTCGAACCACAAAAAGTTTTGAAAGTCGTGAAAAATAGAAAATGGGTCGTCTTGCCACTAAA
644 AACCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAA
* *
20618828 ATTCACATGATGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGG
709 ATTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATAGAATTGGCATGG
* *
20618893 TCGAAATATGAAGATGTGCTTGAACCCACCTACCATCCGTTCGATCCCCAGCTTGCACATCCTGC
774 TCAAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCAGCTTGCACATCCTGC
* *
20618958 CTCTCTGGTCAGCTGAACGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
839 CTCTCTGGTCAGCTGAACGCCGGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
20619023 CCCAGTCTAA
904 CCCAGTCTAA
* * *
20619033 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACC-GAACCGAGAGTTGTGGCAGCAGGATCGAC
1 GCATACGAAGTTCA-TTCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGAC
** *
20619097 AGCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCGTA-TCTTGCCTCTCTGACCGGCTGAGCG
64 AGCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCACATTC-TGCCTCTCTGGCCGGCTGAGCG
*
20619161 CCCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGA
128 CCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGA
* * *
20619226 GTTCATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGTGG-TCGAGCATGTGTTGGTGC
193 G-TAATTCCCAGTCTAAGATTTTGAGCCATAGTGCACATGCTG-GGCTCGAGCATGTGCTGGTGC
* * * *
20619290 CGCATTTTTTTCACCCGGGGCACTATCGTCGGAGCATCATCGGAG-A-G-CCTA-A-CC-AGC-A
256 CACATTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGGAGCACGTCCGAGAGCCAAGCGA
* * *
20619348 -GCATTGGGGGTTTCGACGATTG-GGGGGGCCAGCGGGGTGTGCGTACATGATGTGCGATGGGTG
321 GGCATTGGGGGTTCCGACAATTGCGGGGGGCCAG-GGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
20619411 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAACCTCGAGAACCCACACCCCCTTA
385 CTGGTACTTGGCCCTTATATTAGCCCCCTATCACTCATCAAACCTCGAGAACCCACACCCCCTTA
20619476 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAAAAGGAACACT
450 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAAAAGGAACACT
* *** *
20619541 TTTTTCAAATAGTCACAAAATCTTCTCCACTTCAAGTTTTTCTCTGAATTTTTTTATGCATGCCA
515 TTTTTCAAACAGTCACAAAATCTTCTCCACTTCAAGTTTTAAGCTGAA-TTTTTTATGCATGACA
* * *
20619606 ACAAAAATACAAGGATCACCTCTACCAAATTTTGGGACACAACTCTTTCTAAAAAAATTG-TAAA
579 AAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTGTTAAA
***
20619670 AATCC-CGAACTGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAACGGGTCGTCTTGCCACGAA
644 AA-CCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAA
* * *
20619733 ACTTCACATGAAGTCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATG
708 AATTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATAGAATTGGCATG
* * *
20619798 G-CAAAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCTGCTTGCGCATTCT
773 GTC-AAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCAGCTTGCACATCCT
* *
20619862 GCCTCTCTGGTCGGCTGAACGTCGGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
837 GCCTCTCTGGTCAGCTGAACGCCGGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
20619927 TCCCCAGTCTAA
902 TCCCCAGTCTAA
* *
20619939 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGCATCGACA
1 GCATACGAAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * *
20620004 GCACGTAGGGGGGATTGGACCGATCCCCCGCTTGCACATTCTACCT-TTTCGGTCGGCTGAGTGC
65 GCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCT-GGCCGGCTGAGCGC
* * * *
20620068 CCGCACGC-CTATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 CCGCACGCTC-GTTTCGTAGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
20620125 CCCAGCCAGA
Statistics
Matches: 971, Mismatches: 104, Indels: 45
0.87 0.09 0.04
Matches are distributed among these distances:
905 8 0.01
906 375 0.39
907 241 0.25
908 74 0.08
909 1 0.00
910 2 0.00
912 2 0.00
913 1 0.00
914 2 0.00
915 1 0.00
916 3 0.00
917 162 0.17
918 97 0.10
919 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (913 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGATCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTA
ATTCCCAGTCTAAGATTTTGAGCCATAGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAT
TTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGGAGCACGTCCGAGAGCCAAGCGAGGCAT
TGGGGGTTCCGACAATTGCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTAGCCCCCTATCACTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGC
ATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAAAAGGAACACTTTTTTC
AAACAGTCACAAAATCTTCTCCACTTCAAGTTTTAAGCTGAATTTTTTATGCATGACAAAAAAAA
TACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTGTTAAAAACCTCG
AACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAAATTCACA
TGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATAGAATTGGCATGGTCAAAAT
ATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCAGCTTGCACATCCTGCCTCTCTG
GTCAGCTGAACGCCGGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
TAA
Found at i:20620249 original size:159 final size:158
Alignment explanation
Indices: 20619939--20620441 Score: 532
Period size: 159 Copynumber: 3.2 Consensus size: 158
20619929 CCCAGTCTAA
* *
20619939 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGCATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
20620003 AGCACGTAG-GGGGGATTGGACCGATCCCCCGCTTGCACATTCTACCTTTTCGGTCGGCTGAGTG
65 AGCACGTAGAGGGGGATTGGGCCGAT-CCCTGCTTGCGCATTCTGCCTCTTCGGTCGGCTAAGCG
* * *
20620067 CCCGCACG-CCTATTTCGTTGGTTGGCTTAG
129 CCCGCACGTTC-GTTTCGTGGGTTGGCTTAG
* ** * * * *
20620097 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCAAGGGTTACGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGAC
* *
20620161 AGCACGTAGAGGGGGATTGGGCCGATCCCTGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCG
65 AGCACGTAGAGGGGGATTGGGCCGATCCCTG-CTTGCGCATTCTGCCTCTTCGGTCGGCTAAGCG
* *
20620226 CCCGCACGTTCGTTTCGTGGGTTGACGTAG
129 CCCGCACGTTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
20620256 GCATACGGAGTTCAGTCCCA-GTCTAAGATCAGATCAGACTGAGGGTTGTGGCAGCAAGATCGAT
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGAC
** * * * ***
20620320 AGCACGCTAGA-GGGGATCAGGCCGATCCTCGGCTTGCGTATTCTGCCTCTCCAACCGGCTAAGC
65 AGCACG-TAGAGGGGGATTGGGCCGATCC-CTGCTTGCGCATTCTGCCTCTTCGGTCGGCTAAGC
* *
20620384 ACCCGTACGTTCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGTTCGTTTCGTGGGTTGGCTTAG
20620415 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20620442 CATACGGCGT
Statistics
Matches: 284, Mismatches: 51, Indels: 19
0.80 0.14 0.05
Matches are distributed among these distances:
158 69 0.24
159 204 0.72
160 11 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGAGGGGGATTGGGCCGATCCCTGCTTGCGCATTCTGCCTCTTCGGTCGGCTAAGCGCC
CGCACGTTCGTTTCGTGGGTTGGCTTAG
Found at i:20620444 original size:26 final size:26
Alignment explanation
Indices: 20620415--20620467 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20620405 GTTGGCTTAG
20620415 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
20620441 GCATACGGCGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20620467 G
1 G
20620468 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20621177 original size:26 final size:26
Alignment explanation
Indices: 20621141--20621191 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20621131 TGACTTAGGT
20621141 ATACAGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
20621167 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
20621192 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:20622404 original size:26 final size:26
Alignment explanation
Indices: 20622374--20622426 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20622364 GTTAGCTTAG
*
20622374 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20622400 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20622426 G
1 G
20622427 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20623017 original size:26 final size:26
Alignment explanation
Indices: 20622987--20623042 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
20622977 TGGGTTGACT
20622987 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
20623013 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
20623039 TAAG
1 TAAG
20623043 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:20623383 original size:26 final size:26
Alignment explanation
Indices: 20623333--20623385 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20623323 ATTGGCTTAG
* *
20623333 GCATATAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
20623359 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
20623385 G
1 G
20623386 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:20624419 original size:158 final size:158
Alignment explanation
Indices: 20624255--20624558 Score: 355
Period size: 158 Copynumber: 1.9 Consensus size: 158
20624245 GGACCAGACG
* * * * *
20624255 GAGGGTTACGATAGTAGGATTGATAGCATACAG-GGGGGATCGGG-TCGGTCCCCAGCTTGTGCA
1 GAGGGTTACGATAGTAGGATCGACAGCACACAGAGAGGGA-CGGGCT-GATCCCCAGCTTGTGCA
* * * * * * *
20624318 TTCTGCCTTTCC-GACCGACTGAGCGCCCGTACGTC-CGTTTCGTGGGTTAGCTTAGGCATAGGG
64 TTCTACCTCTCCTG-CCGACTGAACGCCCGCAC-TCTCATTTCATGGGTTAGCTTAGGCATACGG
20624381 AGTTCATTCCATGTCTAAGCCCCAGTCGGACC
127 AGTTCATTCCATGTCTAAGCCCCAGTCGGACC
** * * * *
20624413 GAGGGTTGTGGTAGTGGGATCGACAGCACGCAGAGAGGGACGGGCTGATCCCCGGCTTGTGCATT
1 GAGGGTTACGATAGTAGGATCGACAGCACACAGAGAGGGACGGGCTGATCCCCAGCTTGTGCATT
* * *
20624478 CTACCTCTCCTGCCGATTGAATGCCCGCACTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
66 CTACCTCTCCTGCCGACTGAACGCCCGCACTCTCATTTCATGGGTTAGCTTAGGCATACGGAGTT
20624543 CATTCCATGTCTAAGC
131 CATTCCATGTCTAAGC
20624559 ATACAGAGTT
Statistics
Matches: 121, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
157 2 0.02
158 112 0.93
159 7 0.06
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (158 bp):
GAGGGTTACGATAGTAGGATCGACAGCACACAGAGAGGGACGGGCTGATCCCCAGCTTGTGCATT
CTACCTCTCCTGCCGACTGAACGCCCGCACTCTCATTTCATGGGTTAGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGTCGGACC
Found at i:20624758 original size:26 final size:26
Alignment explanation
Indices: 20624728--20624780 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20624718 GTTGACTTAG
20624728 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
20624754 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20624780 G
1 G
20624781 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20625119 original size:26 final size:26
Alignment explanation
Indices: 20625070--20625122 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20625060 GTTGGCTTAG
*
20625070 GCATACGAAGTTCATTTCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
20625096 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
20625122 G
1 G
20625123 ACTTTCAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:20625819 original size:26 final size:26
Alignment explanation
Indices: 20625789--20625896 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
20625779 TGAGTTGACT
*
20625789 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
20625815 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
20625841 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
* * *
20625867 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGAAGTTCATCCCCAGTC
20625893 TAAG
1 TAAG
20625897 ATCAGACCGG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:20626367 original size:154 final size:153
Alignment explanation
Indices: 20625867--20626358 Score: 462
Period size: 159 Copynumber: 3.1 Consensus size: 153
20625857 ATCCCCAGTC
*
20625867 TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGATCG
* * * * *
20625932 ACGGCACGCAG-GGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGTTGAG
66 ACAGCACGCAGAGGGGG---G-GC-GATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTGAA
* *
20625996 TGCCTGCACGCCT-GTTTCATGGGTTGGCT
126 CGCC--CACACCTCGTTTCATGGGTTGGCT
* * * ** * * * ** **
20626025 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CC-AGACCGATGGTTGTGGTAGTGGGA
1 TAAGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCGA-ATCGAGGGTTGCGACAGCAGGA
* * *
20626087 CCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCC-GGCTGGC
63 TCGACAGCACGCAGA-GGGG---GGG-CGATCCCCGGCTTGCGCATTATGCCTCTCCAGTC-GGC
* * *
20626151 TCAACGCTCGA-ACGCTCGTTTCATGGGTTGACT
122 TGAACGC-CCACAC-CTCGTTTCATGGGTTGGCT
* *
20626184 TAGGCATAC-GACGTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTACGACAGCAGGATC
1 TAAGCATACGGA-GTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGATC
* *
20626248 GATAGCATGCAGAGGGGGGGTCGATCCCCGGCTTGCGCATT-TGCCTCTCCAGTCGGCTGAACGC
65 GACAGCACGCAGAGGGGGGG-CGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTGAACGC
20626312 CCACACACTCGTTTCATGGGTTGGCT
129 CCACAC-CTCGTTTCATGGGTTGGCT
20626338 TAAGCATACGGAGTTCATTCC
1 TAAGCATACGGAGTTCATTCC
20626359 TTGTCTAAGC
Statistics
Matches: 265, Mismatches: 49, Indels: 44
0.74 0.14 0.12
Matches are distributed among these distances:
153 2 0.01
154 55 0.21
155 26 0.10
157 4 0.02
158 65 0.25
159 101 0.38
160 11 0.04
163 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (153 bp):
TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGATCG
ACAGCACGCAGAGGGGGGGCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTGAACGCCC
ACACCTCGTTTCATGGGTTGGCT
Found at i:20626368 original size:26 final size:26
Alignment explanation
Indices: 20626338--20626419 Score: 112
Period size: 26 Copynumber: 3.2 Consensus size: 26
20626328 TGGGTTGGCT
*
20626338 TAAGCATACGGAGTTCATTCCTTGTC
1 TAAGCATACGGAGTTCATTCCATGTC
*
20626364 TAAGCATACGGAGTTCTTTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGTC
* *
20626390 GAAGCATACAGAGTTCATTCCCA-GTC
1 TAAGCATACGGAGTTCATT-CCATGTC
20626416 TAAG
1 TAAG
20626420 ATCAGATCGG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGTC
Found at i:20627946 original size:158 final size:159
Alignment explanation
Indices: 20627644--20628302 Score: 592
Period size: 158 Copynumber: 4.2 Consensus size: 159
20627634 CAGTCTAAGT
* ** * * *
20627644 ATACAGAGTTCATTCCCA-GTCTAAGATTGGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAG
1 ATACAGAGTTCATT-CCATATCTAAGATCAGACCGAATCGAGGGTTACGGCAGCAGGATCGACAG
* * * * *
20627708 CACGCAGGGGGGGATTGGACC-GATCCCTTGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCAC
65 CACACA-GGGGGGACTGGTCCAGATCCCTCGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGC
*
20627772 CCACACG-TCCGTTTCATGGGTTGGCTTAGGC
129 CCACACGCT-CGTTTCATGGGTTGACTTAGGC
* * * * * * *
20627803 ATACAAAGTTTATTCCCTATCTAAGATCTGATCAAATCGAGGGTTACGACAGCAGGATCGACAGC
1 ATACAGAGTTCATTCCATATCTAAGATCAGACCGAATCGAGGGTTACGGCAGCAGGATCGACAGC
* * *
20627868 ACGCAGGGGGGACTGGTCCAG-TCCCTCGCTTGCGCATTCTGCCTCTCCG-GTCGACTGAGCGCC
66 ACACAGGGGGGACTGGTCCAGATCCCTCGCTTGCGCATTCTGCCTCTCCGACT-GGCTGAGCGCC
* *
20627931 CACACGCTAGTTTCATTGGTTGACTTAGGC
130 CACACGCTCGTTTCATGGGTTGACTTAGGC
* * ** ** * *
20627961 ATATAGAGTTCATTCCATGTCTAAGCCCCA-ACCGAA-CTGAGGGTTGGGGCAACGGGATCGACA
1 ATACAGAGTTCATTCCATATCTAAG-ATCAGACCGAATC-GAGGGTTACGGCAGCAGGATCGACA
* * * * * ** *
20628024 GCACATAGAGGGGGA-TCGG-GCTGATCACC-GGCTTGCGCATTATGCCTCTCCGGTTGGCTCAG
64 GCACACAG-GGGGGACT-GGTCCAGATC-CCTCGCTTGCGCATTCTGCCTCTCCGACTGGCTGAG
* *
20628086 TGCCCGA-ACGCTCGTTTCGTGGGTTGACTTAGGC
126 CGCCC-ACACGCTCGTTTCATGGGTTGACTTAGGC
* * * *
20628120 ATACAGAGTTCATT-CTTAGTCTAAGATCAGACCGAACCAAGGGTTATGGCAGCAGGATCGACAG
1 ATACAGAGTTCATTCCATA-TCTAAGATCAGACCGAATCGAGGGTTACGGCAGCAGGATCGACAG
* * * * *
20628184 GACACAGGGGGGACCGGGT-C-GAT-CCTCGGCTTGCGCATTCTACCTTTTCGACTGGCTGAGCG
65 CACACAGGGGGGA-CTGGTCCAGATCCCTC-GCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCG
* * *
20628246 CCCGCACGCTTGTTTCATGGGTTGGCTTAGGC
128 CCCACACGCTCGTTTCATGGGTTGACTTAGGC
* *
20628278 ATACGGAGTTCATTCCATGTCTAAG
1 ATACAGAGTTCATTCCATATCTAAG
20628303 CATACGAAGT
Statistics
Matches: 400, Mismatches: 78, Indels: 45
0.76 0.15 0.09
Matches are distributed among these distances:
156 2 0.00
157 2 0.00
158 213 0.53
159 178 0.44
160 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
ATACAGAGTTCATTCCATATCTAAGATCAGACCGAATCGAGGGTTACGGCAGCAGGATCGACAGC
ACACAGGGGGGACTGGTCCAGATCCCTCGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCC
ACACGCTCGTTTCATGGGTTGACTTAGGC
Found at i:20628306 original size:26 final size:26
Alignment explanation
Indices: 20628276--20628328 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20628266 GTTGGCTTAG
*
20628276 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20628302 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20628328 G
1 G
20628329 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20628499 original size:26 final size:26
Alignment explanation
Indices: 20628469--20628519 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20628459 TGGGTTGACT
20628469 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
20628495 TAGGCATACGGTGTTCATTCCCAGT
1 TAGGCATACGGAGTTCATCCCCAGT
20628520 ATAAGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:20628513 original size:196 final size:191
Alignment explanation
Indices: 20628192--20628905 Score: 679
Period size: 196 Copynumber: 3.7 Consensus size: 191
20628182 AGGACACAGG
* * * * * * *
20628192 GGGGACCGGGTCGATCCTCGGCTTGCGCATTCT-ACCTTTTCGACTGGCTGAGCGCCCGCACGCT
1 GGGGACTGGGCCGATCCCCGGCTTACGCATTCTGA-CTCTCCG-CCGGCTGAGCGCCCGCACGCT
* * *
20628256 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCC
64 TGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCC
* ** * *
20628321 AGTCTAAGATCGGACTGGACCGAGGGTTACGATAACAGGATCGGCAACAAGATCGACAGCTTGCA
129 AGTCTAAGATCAGACCAGACAGAGGGTTACGATAGCAGGATC-GCAACAAGATCGACAGC-TG--
20628386 AA
190 AA
* * * ** ** * *
20628388 AGAGACTGGGCCAATCCCCGGCTTGA-GCATTCTGACTCTCCAATCGATTGAGCACCCGTACGCT
1 GGGGACTGGGCCGATCCCCGGCTT-ACGCATTCTGACTCTCC-GCCGGCTGAGCGCCCGCACGCT
* * *
20628452 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAGGCATACGGTGTTCATTCC
64 TGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCC
* * * *
20628516 CAGTATAAGATCAGACCAGACAGAGGGTTGCGACAGCAGGATCG--AC-AG--C-AC-GCT-AG
128 CAGTCTAAGATCAGACCAGACAGAGGGTTACGATAGCAGGATCGCAACAAGATCGACAGCTGAA
* * *
20628572 GGGGACTGGGCCGGTCCCCGGCTTACGCATTC-GACCTCTCCGGCCGGCTGAGCGCTCGCATGCT
1 GGGGACTGGGCCGATCCCCGGCTTACGCATTCTGA-CTCTCC-GCCGGCTGAGCGCCCGCACGCT
* *
20628636 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT-AGCATACGGAGTTCATTCCC
64 TGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCC
* * *
20628700 AGTCTAAGATCAGACCAGACAGAGAGTTACGATAGTAGGA--GCAACAGCAGGATCGACAGCACG
129 AGTCTAAGATCAGACCAGACAGAGGGTTACGATAGCAGGATCGCAACA--A-GATCGACAGC-TG
20628763 TAA
190 -AA
** * * * *
20628766 GGGGA-TCGGATCGATCCCCGACTTACGCATTCTGTCTCTCCGGCTGGCTGAGCGCCCGAACGCT
1 GGGGACT-GGGCCGATCCCCGGCTTACGCATTCTGACTCTCC-GCCGGCTGAGCGCCCGCACGCT
** * * *
20628830 TGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCG
64 TGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCC
*
20628894 AAGTCTAAGATC
128 CAGTCTAAGATC
20628906 GGATCGGACT
Statistics
Matches: 421, Mismatches: 73, Indels: 49
0.78 0.13 0.09
Matches are distributed among these distances:
181 1 0.00
183 61 0.14
184 84 0.20
186 1 0.00
187 2 0.00
188 2 0.00
189 3 0.01
190 3 0.01
191 2 0.00
192 2 0.00
193 3 0.01
194 87 0.21
195 33 0.08
196 133 0.32
197 4 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (191 bp):
GGGGACTGGGCCGATCCCCGGCTTACGCATTCTGACTCTCCGCCGGCTGAGCGCCCGCACGCTTG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCAGACAGAGGGTTACGATAGCAGGATCGCAACAAGATCGACAGCTGAA
Found at i:20628833 original size:194 final size:196
Alignment explanation
Indices: 20628548--20628905 Score: 492
Period size: 194 Copynumber: 1.8 Consensus size: 196
20628538 GAGGGTTGCG
* * * *
20628548 ACAGCAGGATCGACAGCACGCTAGGGGGACTGGGCCGGTCCCCGGCTTACGCATTCGACCTCTCC
1 ACAGCAGGATCGACAGCACGCTAAGGGGACTGGACCGATCCCCGACTTACGCATTCGACCTCTCC
* * * * * *
20628613 GGCCGGCTGAGCGCTCGCATGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATG
66 GGCCGGCTGAGCGCCCGAACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-G
*
20628677 TCT-AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGAGTTACGATAGTAGGAG
130 TCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACAGAGAGTTACGATAGTAGGAG
20628741 CA
195 CA
* *
20628743 ACAGCAGGATCGACAGCACG-TAAGGGGA-TCGGATCGATCCCCGACTTACGCATTCTG-TCTCT
1 ACAGCAGGATCGACAGCACGCTAAGGGGACT-GGACCGATCCCCGACTTACGCATTC-GACCTCT
* **
20628805 CCGGCTGGCTGAGCGCCCGAACGCTTGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA
64 CCGGCCGGCTGAGCGCCCGAACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA
* *
20628870 GTCTAAGCATATGGAGTTCATTCGAAGTCTAAGATC
129 GTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATC
20628906 GGATCGGACT
Statistics
Matches: 141, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
193 1 0.01
194 88 0.62
195 52 0.37
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (196 bp):
ACAGCAGGATCGACAGCACGCTAAGGGGACTGGACCGATCCCCGACTTACGCATTCGACCTCTCC
GGCCGGCTGAGCGCCCGAACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
CTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACAGAGAGTTACGATAGTAGGAGC
A
Found at i:20628938 original size:378 final size:379
Alignment explanation
Indices: 20628118--20629054 Score: 1044
Period size: 378 Copynumber: 2.5 Consensus size: 379
20628108 GTTGACTTAG
* ** * **
20628118 GCATACAGAGTTCATTCTTAGTCTAAGATCAGACC-GAACCA-AGGGTTATGGCAGCAGGATCGA
1 GCATACGGAGTTCATTCCAAGTATAAGATCAGACCAG-A-CAGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
20628181 CAGGACACAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTACCTTTTCGACTGGCTGAGCG
64 CAGCACGCA-GGGGGACTGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCG
*
20628246 CCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAA
128 CTCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAA
* ** * * * **
20628311 GTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGATAACAGGATCGGCAACAAGATCG
193 GTTCATTCCCAGTCTAAGATCAGACCAGACAGAGAGTTACGATAACAGGAGCAACAACAAGATCG
** * * *
20628376 ACAGCTTGCAAAAGAGACTGGGCCAATCCCCGGCTTGAGCATTCTGACTCTCCAATCGATTGAGC
258 ACAGCACGCAAAAGAGACTGGACCAATCCCCGACTTGAGCATTCTGACTCTCCAATCGACTGAGC
* * *
20628441 ACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAG
323 ACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * *
20628498 GCATACGGTGTTCATTCCCAGTATAAGATCAGACCAGACAGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTATAAGATCAGACCAGACAGAGGGTTGCGGCAGCAGGATCGACA
* * * *
20628563 GCACGCTAGGGGGACTGGGCCGGTCCCCGGCTTACGCATTCGACCTCTCCGGCCGGCTGAGCGCT
66 GCACGC-AGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCT
* *
20628628 CGCATGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT-AGCATACGGAGT
130 CGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGT
** * *
20628692 TCATTCCCAGTCTAAGATCAGACCAGACAGAGAGTTACGATAGTAGGAGCAACAGCAGGATCGAC
195 TCATTCCCAGTCTAAGATCAGACCAGACAGAGAGTTACGATAACAGGAGCAACAACAAGATCGAC
* * * * * * ** *
20628757 AGCACG-TAAGGGGA-TCGGATCGATCCCCGACTT-ACGCATTCTGTCTCTCC-GGCTGGCTGAG
260 AGCACGCAAAAGAGACT-GGACCAATCCCCGACTTGA-GCATTCTGACTCTCCAATC-GACTGAG
* * **
20628818 CGCCCGAACGCTTGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
322 CACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * * * * * * *
20628876 GCATATGGAGTTCATTCGAAGTCTAAGATCGGATCGGACTGGGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTATAAGATCAGACCAGACAGAGGGTTGCGGCAGCAGGATCGACA
* * ** * *
20628941 GCTCGCAAGGTGGACTGGGTCGATCCCTAGCTTACGTATTCTACCTCTCCGATCGGCTGAGCG-T
66 GCACGC-AGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCT
* * * * * *
20629005 CCGTACGCCTGTTTCGTGTGTTGGCTTAGGCATAGGGAGGTCATTCCATG
130 -CGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
20629055 CTGGGCTCGG
Statistics
Matches: 465, Mismatches: 85, Indels: 16
0.82 0.15 0.03
Matches are distributed among these distances:
377 4 0.01
378 236 0.51
379 70 0.15
380 153 0.33
381 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (379 bp):
GCATACGGAGTTCATTCCAAGTATAAGATCAGACCAGACAGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCTC
GCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTT
CATTCCCAGTCTAAGATCAGACCAGACAGAGAGTTACGATAACAGGAGCAACAACAAGATCGACA
GCACGCAAAAGAGACTGGACCAATCCCCGACTTGAGCATTCTGACTCTCCAATCGACTGAGCACC
CGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
Found at i:20630090 original size:159 final size:158
Alignment explanation
Indices: 20629728--20630135 Score: 429
Period size: 159 Copynumber: 2.6 Consensus size: 158
20629718 CCCAGTCTAA
* * * *
20629728 GCATACAGAGTTCATTCCCAGTCGAAGATCGGATCGGACCAAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGGCAGCAGGATCGACA
* * * ** *
20629793 ACACGTAAGA--GGGATCGGGTCGATCCCTGGCTTGCGTATTCTGTCTCTCTGGCCAGCTGAGCA
66 GCA--TAAGAGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTGTCTCTCCAGCCAGCTAAGCA
*
20629856 CCGACACGCCCATTTCATGGGTTGGCTTAG
129 CCGACACGCCCATTTCATGGGTTGACTTAG
* ** * *
20629886 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCT-GGACCAAGGGTTGTGGCAGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAAGGGTTGTGGCAGCAGGATCGA
*
20629949 CAGCATACAGAGGGGGATCGGGTCGATCCCTGACTTGCGCATTAC-GTCTCTCCAGCCTGCTCAA
64 CAGCATA-AGAGGGGGATCGGGTCGATCCCTGACTTGCGCATT-CTGTCTCTCCAGCCAGCT-AA
* * *
20630013 CGC-CCGA-ACGCTCGTTTCGTGGGTTGACTTAG
126 -GCACCGACACGCCCATTTCATGGGTTGACTTAG
* ** * *
20630045 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGGCAGCAGGATCGACA
*
20630110 GCACGT-AG-GGGGGATCAGGTCGATCC
66 GCA--TAAGAGGGGGATCGGGTCGATCC
20630136 TCGGCTTACG
Statistics
Matches: 207, Mismatches: 31, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
156 2 0.01
157 6 0.03
158 71 0.34
159 116 0.56
160 9 0.04
161 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGGCAGCAGGATCGACA
GCATAAGAGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTGTCTCTCCAGCCAGCTAAGCACC
GACACGCCCATTTCATGGGTTGACTTAG
Found at i:20630435 original size:26 final size:26
Alignment explanation
Indices: 20630399--20630451 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20630389 GTTGACTTAG
20630399 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCCAA-TCTAA
20630425 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
20630451 G
1 G
20630452 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:20632658 original size:159 final size:158
Alignment explanation
Indices: 20632294--20632658 Score: 471
Period size: 158 Copynumber: 2.3 Consensus size: 158
20632284 AACTCCGTAT
* ** * *
20632294 GCTTAAACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * * * * * *
20632359 TCGGCTGTAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCTCTACGTCCTATCGGTCC
66 CCGGCCGGAAAGGCAAAATACGCAAACCGAGGATCGACCCGATCCCCTCTACGTCCTATCGGTCC
* * *
20632424 TGTTGCCACAACCCTCAGTCCGGCTGGA
131 CGCTGCCACAACCCTCAGTCCGACTGGA
* *
20632452 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * *
20632517 CCGGCCGGAAAGGCAAAATACGCAAATCGAGG-TCTGACCCGATCCCCCTCTACGTGCTGTCGGT
66 CCGGCCGGAAAGGCAAAATACGCAAACCGAGGATC-GACCCGAT-CCCCTCTACGTCCTATCGGT
*
20632581 CCCGCTGCCACAACCCTCAGTCCGACTGGG
129 CCCGCTGCCACAACCCTCAGTCCGACTGGA
* * *
20632611 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAACG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
20632659 GGTGTACGGG
Statistics
Matches: 177, Mismatches: 28, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
157 2 0.01
158 88 0.50
159 87 0.49
ACGTcount: A:0.26, C:0.32, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CCGGCCGGAAAGGCAAAATACGCAAACCGAGGATCGACCCGATCCCCTCTACGTCCTATCGGTCC
CGCTGCCACAACCCTCAGTCCGACTGGA
Found at i:20632722 original size:159 final size:159
Alignment explanation
Indices: 20632294--20632723 Score: 490
Period size: 159 Copynumber: 2.7 Consensus size: 159
20632284 AACTCCGTAT
* **
20632294 GCTTAAACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
20632359 TCGGCTGTAGAGGCAGAATGCGTAAGCCGAGGATC-GACCCGGT-CCCCTCTACGTCCTATCGGT
66 TCGCCAG-AGAGGCAAAATGCGCAAGTCGAGGATCTGACCCGGTCCCCCTCTACGTCCTATCGGT
* * *
20632422 CCTGTTGCCACAACCCTCAGTCCGGCTGGA
130 CCCGCTGCCACAACCCTCAGTCCGACTGGA
* * * *
20632452 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
20632517 CCGGCCGGAAAGGCAAAATACGCAAATCGAGG-TCTGACCCGATCCCCCTCTACGTGCTGTCGGT
66 TC-GCCAGAGAGGCAAAATGCGCAAGTCGAGGATCTGACCCGGTCCCCCTCTACGTCCTATCGGT
*
20632581 CCCGCTGCCACAACCCTCAGTCCGACTGGG
130 CCCGCTGCCACAACCCTCAGTCCGACTGGA
* * * * * * *
20632611 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAACGGGTGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * *
20632676 TCAATCAGAGAGGCAAAATGCGCAAGTCGGGGATCTG-TCCGGTCCCCC
66 TC-GCCAGAGAGGCAAAATGCGCAAGTCGAGGATCTGACCCGGTCCCCC
20632724 CTGCGTGTTG
Statistics
Matches: 223, Mismatches: 45, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
157 2 0.01
158 84 0.38
159 133 0.60
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGCCAGAGAGGCAAAATGCGCAAGTCGAGGATCTGACCCGGTCCCCCTCTACGTCCTATCGGTC
CCGCTGCCACAACCCTCAGTCCGACTGGA
Found at i:20634366 original size:25 final size:26
Alignment explanation
Indices: 20634320--20634371 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20634310 CCAGTCTGAT
*
20634320 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20634346 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20634371 C
1 C
20634372 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20634557 original size:26 final size:26
Alignment explanation
Indices: 20634528--20634580 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20634518 CCGGTCTGAT
20634528 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20634554 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20634580 C
1 C
20634581 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20634600 original size:521 final size:521
Alignment explanation
Indices: 20633602--20634606 Score: 1330
Period size: 521 Copynumber: 1.9 Consensus size: 521
20633592 CCTCTGCGTG
20633602 CTGTCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGTCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
* *** * * *** *
20633667 CCTAAGCCAACCCATGAAATGGGCGTGTGGGTGCTCAACCCATTGGAGAGGCAGAATACGCAAGC
66 ACTAAGCCAACCCATGAAACCAGCGTGCGGGCGCTCAACCCACCAGAGAGGCAGAATACCCAAGC
** * * * ** *
20633732 CGGGGAGCGGCCCGGTCCCCCCTACGTGCTGCCGATCCAGCTATCGCAACCCTCGGTCCGGTCCG
131 CAAGGAGCGGCCCAGTCCCCCCTACGAGCTACCGATCCAGCTATCGCAACCCTCAATCCAGTCCG
*
20633797 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGATGAACTCCATATGCTTAAGTCAACC
196 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGATGAACTCCATATGCCTAAGTCAACC
* * * *
20633862 CATGAAACGACCGTGCGGGCACTCAACCGGTCGAAAAAGCCGATCGGAGAGGTAGAATACGCAAG
261 CACGAAACGACCGTACGGGCACTCAACCGATCGAAAAAGCCGATCGGAGAGGCAGAATACGCAAG
* * * * *
20633927 CCAGGGATCAACTCGATCCCCCCTACGTGCTACCGATCCTGCTGTTGGTCCTGCTATCATAACCC
326 CCAGGGATCAACCCGATCCCCCCTACGTGCTACCAATCCTGCTGCTGGTCCTACTATCACAACCC
* * **
20633992 TCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACTTTATA
391 TCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCATA
20634057 TGCCTAAACCAACCCACGAAACGAGCGTGTGGGCACTCAGTCGGCTGTATAGGTAGAATCTACGT
456 TGCCTAAACCAACCCACGAAACGAGCGTGTGGGCACTCAGTCGGCTGTATAGGTAGAATCTACGT
20634122 C
521 C
* *
20634123 CTGTTGGTCCC-CTCGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 CTGTCGGTCCCGCT-GCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
* * *
20634187 GACTAAGCCAACCCATGAAACCAGCGTGCGGGCGCTC-AGCCAGCCAGAGAGGCTGAATGCCCAA
65 GACTAAGCCAACCCATGAAACCAGCGTGCGGGCGCTCAACCCA-CCAGAGAGGCAGAATACCCAA
* * * * * * *
20634251 GTCAAGGATCGGCCCATTCCCCCCTGCGAGCTATCGATCCTGCTGTCGCAACCCTCAATCCAGTC
129 GCCAAGGAGCGGCCCAGTCCCCCCTACGAGCTACCGATCCAGCTATCGCAACCCTCAATCCAGTC
* * *
20634316 TGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAA
194 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGATGAACTCCATATGCCTAAGTCAA
* * * * * * * * **
20634381 CCCACGAAACGAGCGTACGGGCGCTCAGCCGATTGGAGAGGCCGGTCGGAGAGGCAGAATGTGCA
259 CCCACGAAACGACCGTACGGGCACTCAACCGATCGAAAAAGCCGATCGGAGAGGCAGAATACGCA
* * * ** * * * **
20634446 AGCCGGGGATCAACCCGGTCCTCCCTGTGTGTTGCCAATCCTGCTGCTGGTCCTACTGTTGCAAC
324 AGCCAGGGATCAACCCGATCCCCCCTACGTGCTACCAATCCTGCTGCTGGTCCTACTATCACAAC
* * *
20634511 CCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCG
389 CCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCA
* *
20634576 TATGCCTAAGCCAACCCTCGAAACGAGCGTG
454 TATGCCTAAACCAACCCACGAAACGAGCGTG
20634607 CGAGCGCTCA
Statistics
Matches: 410, Mismatches: 72, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
520 6 0.01
521 404 0.99
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (521 bp):
CTGTCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
ACTAAGCCAACCCATGAAACCAGCGTGCGGGCGCTCAACCCACCAGAGAGGCAGAATACCCAAGC
CAAGGAGCGGCCCAGTCCCCCCTACGAGCTACCGATCCAGCTATCGCAACCCTCAATCCAGTCCG
ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGATGAACTCCATATGCCTAAGTCAACC
CACGAAACGACCGTACGGGCACTCAACCGATCGAAAAAGCCGATCGGAGAGGCAGAATACGCAAG
CCAGGGATCAACCCGATCCCCCCTACGTGCTACCAATCCTGCTGCTGGTCCTACTATCACAACCC
TCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCATA
TGCCTAAACCAACCCACGAAACGAGCGTGTGGGCACTCAGTCGGCTGTATAGGTAGAATCTACGT
C
Found at i:20635072 original size:25 final size:26
Alignment explanation
Indices: 20635028--20635079 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20635018 CTGATCTGAT
20635028 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20635054 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20635079 C
1 C
20635080 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20636833 original size:159 final size:159
Alignment explanation
Indices: 20636357--20636889 Score: 524
Period size: 159 Copynumber: 3.4 Consensus size: 159
20636347 CTACCGGTCT
* *
20636357 TGCTATCACAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAA
1 TGCTATCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20636422 CCCACGAAACGAGCGTACGGGTGCTCAATCGATCGGAGAGGCAGAATGCATAAACCTG-GGATCG
66 CCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCC-GAGGATCG
*
20636486 ACCCGATCCCCTTCTGCGTGAC-ATCGATCC
130 ACCCGATCCCCCTCTGCGTG-CTATCGATCC
* * * * * * * * * *
20636516 TGCTATCGCAACCCACGTTTCGATTTGATG-TTATAC-TGGGAATCAACTCCGTATGCATAAGTC
1 TGCTATCACAACCCTCGGTCCGA-CTGAGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCC
* * * * ** *
20636579 AACCCACGAAACGAGCGTGCAGGTGCTGAGCCGACCAAAGAGGCATAATGCACAAGCC-AGGGAT
64 AACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGA-GGAT
* * * * *
20636643 CGACCCGGTCCCTCTCTGCATCCTACCGATCC
128 CGACCCGATCCCCCTCTGCGTGCTATCGATCC
* * * *
20636675 CGTTACCACAACCCTCGGTCCGACTGCGGCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCA
1 TGCTATCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCA
* * * * *
20636739 ACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGTCGGATAGGCAGAATGCGCAAGCCGAGGATTG
65 ACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCG
* * * *
20636804 GCCCGATCCCCCTCTGTGTGCTGTTGATCC
130 ACCCGATCCCCCTCTGCGTGCTATCGATCC
* * * *
20636834 TGCTATCGCAACCCTCGGTTCGGTCTGA-TCTTAGAC-TGGGAATGAACTCCGTATGC
1 TGCTATCACAACCCTCGG-TCCGACTGAGGCTTAGACAT-GGAATGAACTCCGTATGC
20636890 TTAGACTGGG
Statistics
Matches: 290, Mismatches: 72, Indels: 24
0.75 0.19 0.06
Matches are distributed among these distances:
158 7 0.02
159 271 0.93
160 12 0.04
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (159 bp):
TGCTATCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGA
CCCGATCCCCCTCTGCGTGCTATCGATCC
Found at i:20637069 original size:26 final size:26
Alignment explanation
Indices: 20637031--20637083 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20637021 GGCTCAAAAT
20637031 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20637057 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20637083 C
1 C
20637084 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20637254 original size:26 final size:26
Alignment explanation
Indices: 20637215--20637267 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20637205 CCGATCAGAT
20637215 CTTAGACTACGAATGAACACCGTATG
1 CTTAGACTACGAATGAACACCGTATG
** * *
20637241 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTACGAATGAACACCGTATG
20637267 C
1 C
20637268 CTAATCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTACGAATGAACACCGTATG
Found at i:20637353 original size:184 final size:183
Alignment explanation
Indices: 20637029--20637706 Score: 595
Period size: 184 Copynumber: 3.6 Consensus size: 183
20637019 GTGGCTCAAA
20637029 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * ** * * *
20637094 TCATGAAATGA--ATGTACGGGTGCTCAACCGGCCGGAGAGGCAGAATGCACAAG-TCAGAGATC
66 CCATGAAACGAGCATG--CAGGTGCTCAGTCGGCTGGAGAGGCAGAATGCTCAAGCTGAG-GATC
* * *
20637156 -GACCTGATCCCCCCTACGTGCTGTCGATCTTGCTACCGCAACCCTCGGTCCGATCAG
128 AG-CCTGGTCCCCCCTACGTGCTATCGATCTTGCTACCGTAACCCTCGGTCCGATC-G
** * * *
20637213 ATCTTAGACTACGAATGAACACCGTATGCTTAGAC-TGGGAATGAACTCGGTATGCCTAATCCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * *
20637277 CCCATGAAATGAGCATGCAGGTGCTCAGTTGGCTGGAGAGGCAGAATGCTTAAGCTGAGGATCAG
65 CCCATGAAACGAGCATGCAGGTGCTCAGTCGGCTGGAGAGGCAGAATGCTCAAGCTGAGGATCAG
* * *
20637342 CCTGGTCCCCCCCTACGTGCTATCGATCCTATTGTCGGTCCTACTGCCGTAACCTTTGGCCCGAT
130 CCTGGT-CCCCCCTACGTGCTATCGAT-C---T-T--G--CTA---CCGTAACCCTCGGTCCGAT
20637407 CCG
182 -CG
* * ** * *
20637410 ATCTTATATTGGGAATGAACTTTGCATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * *
20637475 CCATGAAACGAGTGTGCAGGCGCTCAGTCGG-TCGGAGAGGCAGAATG-TGCAAGGCCG-GGAT-
66 CCATGAAACGAGCATGCAGGTGCTCAGTCGGCT-GGAGAGGCAGAATGCT-CAA-GCTGAGGATC
* * * * *
20637536 AGGCCTAGTCCCCCTTACGTGCTATCGATCCTGCTGCCGTAACCCTCGGTTC-ATTTCG
128 A-GCCTGGTCCCCCCTACGTGCTATCGATCTTGCTACCGTAACCCTCGGTCCGA--TCG
* * * *
20637594 ATCTTAGATTGGGAATGAACTCCATATGCTTAGA-ATGGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * * *
20637658 CCCACGAAACGAGCGTACAGACGCTCAGTCGACTAGAGAGGCAGGATGC
65 CCCATGAAACGAGCATGCAGGTGCTCAGTCGGCTGGAGAGGCAGAATGC
20637707 GTAAGTCGGT
Statistics
Matches: 404, Mismatches: 61, Indels: 57
0.77 0.12 0.11
Matches are distributed among these distances:
183 4 0.01
184 213 0.53
185 25 0.06
186 4 0.01
187 2 0.00
189 2 0.00
190 1 0.00
191 1 0.00
192 1 0.00
194 3 0.01
195 1 0.00
196 22 0.05
197 120 0.30
198 5 0.01
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (183 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCATGCAGGTGCTCAGTCGGCTGGAGAGGCAGAATGCTCAAGCTGAGGATCAGC
CTGGTCCCCCCTACGTGCTATCGATCTTGCTACCGTAACCCTCGGTCCGATCG
Found at i:20637632 original size:26 final size:26
Alignment explanation
Indices: 20637596--20637648 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20637586 TCATTTCGAT
*
20637596 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
20637622 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
20637648 C
1 C
20637649 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:20638770 original size:159 final size:159
Alignment explanation
Indices: 20638344--20638774 Score: 431
Period size: 159 Copynumber: 2.7 Consensus size: 159
20638334 AACTCCGTAT
** *
20638344 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCTTGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
20638409 TCGACCAGAGAGGCAAAATACGAAAGCCAGGGATCGGTTCGATCCCCC-CTGCATGCTATCGATT
66 CCGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTCTGCATACTATCGATC
* * *
20638473 CTACTACCACAACCCTCGGTGCGATCTGA
131 CCACTACCACAACCCTCGGTCCGAGCTGA
* * ** * *
20638502 TCTTAGAC-TGAGAATGAACTCCGTATGCATAAATCAACCCACGAAACGAGCGTGCAGGTGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * * * * * * *
20638566 GCCGACCAAAGAGGCATAATGTGCAA-ACTGAAGATCGGCCCGATCCCCCTCTGCGTACTGTCGG
65 GCCGACCAGAGAGGCAAAATGCGCAAGCCAG-GGATCGGTCCGATCCCCCTCTGCATACTATCGA
* * *
20638630 TCCCACTGCGACAACCCTCGGTCCG-GCTGGG
129 TCCCACTACCACAACCCTCGGTCCGAGCT-GA
* * * * * * *
20638661 GCTTAAACATGGAATGAACTCCCTATGCCTATGCCAACCCATGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* *
20638726 CCGA-TAGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCCCCT
66 CCGACCA-GAGAGGCAAAATGCGCAAGCCAGGGATCGGTCCGATCCCCCT
20638775 AGTATGCTGC
Statistics
Matches: 215, Mismatches: 51, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 90 0.42
159 117 0.54
160 4 0.02
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTCTGCATACTATCGATC
CCACTACCACAACCCTCGGTCCGAGCTGA
Found at i:20638856 original size:26 final size:26
Alignment explanation
Indices: 20638820--20638872 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20638810 CTGGTCTGAT
20638820 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
20638846 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20638872 C
1 C
20638873 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20639152 original size:355 final size:338
Alignment explanation
Indices: 20638503--20639569 Score: 947
Period size: 317 Copynumber: 3.2 Consensus size: 338
20638493 GCGATCTGAT
* * * * * * * *
20638503 CTTAGACTGAGAATGAACTCCGTATGCATAAATCAACCCACGAAACGAGCGTGCAGGTGCTGAGC
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTACTCAGC
* * * * * * * * *
20638568 CGACCAAAGAGGCATAATGTGCAA-ACTGAAGATCGGCCC-GATCCCCCTCTGCGTACTGTCGGT
66 CGGCCGAAGAGGCATAATGCGCAAGTCAG-AGATAGACCCAG-TCCCCCTCTGCATCCTGTCGGT
* * * * * * * *
20638631 CCCACTGCGACAACCCTCGGTCCGGCTGGGGCTTAAACATGGAATGAACTCCCTATGCCTATGCC
129 CCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACT-TCTATGCCTAAGCC
* * * *
20638696 AACCCATGAAACGGGCGTGCGGGCGCTTAGCCGAT-AGGAGAGGCAGAATGCGCAAGCCAGGGAT
193 AACCCATGAAATGGGCGTGCGGGTGCTCAGCCGATCA-GAGAGGCAGAATGCACAAGCCAGGGAT
* *
20638760 CGGTCCGATCCCCCTA-GTATG-CTGCTGATCTTGCTGCCGCAACCCTCGTTCTGGTCTGATCTT
257 CGGCCCGATCCCCCTACG--TGCCT-C-GATCCTGCTGCCGCAACCCTCGTTC--GTCTGATCTT
20638823 AGACTGGGAATGAACTTCGTATG
316 AGACTGGGAATGAACTTCGTATG
* *
20638846 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTACTCAGT
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTACTCAGC
*
20638911 CGGCCGAAGAGGCATAATGCGTAAGTC-GAGGATTAG-CCCAGTCCCCTTCTGCGTGCTGTCGAT
66 CGGCCGAAGAGGCATAATGCGCAAGTCAGA-GA-TAGACCCAGT-CCC--C--C-T-CTG-C-AT
*
20638974 CCCCCTGTCGGTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTTCG
120 ---CCTGTCGGTCCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTTC-
* * *
20639039 TATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGTCAGAGAGGCAGAATACAC
181 TATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGCCGATCAGAGAGGCAGAATGCAC
* * **
20639104 AAGTCGGGGATCAACCCGATCCCTCCTACGTGCCATCGATCCTGCTGCCGCAA-CC-C--TCG--
246 AAGCCAGGGATCGGCCCGATCCC-CCTACGTGCC-TCGATCCTGCTGCCGCAACCCTCGTTCGTC
20639163 -G----T---CT--G-AT---C-T-G-AT-
309 TGATCTTAGACTGGGAATGAACTTCGTATG
* * * * * * * *
20639175 CTTAGACTGAGAATGAACTCTGTATGCATAAGTCAACCCACGAAACAAGCGTGTAGGTGCTGAGC
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTACTCAGC
* **
20639240 CGGCCGAAGAGGCATAATGCGCAAGTCAGAGATCGACCTGGTCCCCCTCTGCATCCTGTCGGTCC
66 CGGCCGAAGAGGCATAATGCGCAAGTCAGAGATAGACCCAGTCCCCCTCTGCATCCTGTCGGTCC
* * * * * *
20639305 CGTTGCGACAACCCT-TGATCCGACTGTGGCTTAGACATTGAATGAACTCTCTATGCCTAAGCCA
131 CGCTACCACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAACT-TCTATGCCTAAGCCA
* * * * * *
20639369 ACCCAAGAAATGGGCGTGCGGATGCTCAACCAATCGGAGAGGCAGAATGCACAAGCCAGGGATTG
194 ACCCATGAAATGGGCGTGCGGGTGCTCAGCCGATCAGAGAGGCAGAATGCACAAGCCAGGGATCG
* * * * * ** *
20639434 GCCTGGTCCCCCCTGCGTGCTGTTGATCCTGCTATCGCAACCGTCGGTTCAGTCTGATCTTAGAC
259 GCCCGAT-CCCCCTACGTGC-CTCGATCCTGCTGCCGCAACCCTC-GTTC-GTCTGATCTTAGAC
*
20639499 TGGGAATGAACTCCGTATG
320 TGGGAATGAACTTCGTATG
20639518 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGT
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGT
20639570 ATGGGTGCTC
Statistics
Matches: 582, Mismatches: 88, Indels: 108
0.75 0.11 0.14
Matches are distributed among these distances:
316 1 0.00
317 143 0.25
318 6 0.01
319 1 0.00
320 2 0.00
321 1 0.00
322 5 0.01
323 2 0.00
324 1 0.00
326 2 0.00
328 5 0.01
329 87 0.15
330 5 0.01
331 1 0.00
332 1 0.00
333 3 0.01
335 1 0.00
336 4 0.01
337 1 0.00
339 3 0.01
341 1 0.00
342 4 0.01
343 129 0.22
344 7 0.01
346 2 0.00
348 1 0.00
349 2 0.00
350 3 0.01
351 3 0.01
352 1 0.00
353 1 0.00
354 3 0.01
355 141 0.24
356 7 0.01
357 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (338 bp):
CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTACTCAGC
CGGCCGAAGAGGCATAATGCGCAAGTCAGAGATAGACCCAGTCCCCCTCTGCATCCTGTCGGTCC
CGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTTCTATGCCTAAGCCAAC
CCATGAAATGGGCGTGCGGGTGCTCAGCCGATCAGAGAGGCAGAATGCACAAGCCAGGGATCGGC
CCGATCCCCCTACGTGCCTCGATCCTGCTGCCGCAACCCTCGTTCGTCTGATCTTAGACTGGGAA
TGAACTTCGTATG
Found at i:20639528 original size:26 final size:26
Alignment explanation
Indices: 20639492--20639544 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20639482 TCAGTCTGAT
20639492 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20639518 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20639544 C
1 C
20639545 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20640079 original size:26 final size:26
Alignment explanation
Indices: 20640041--20640093 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20640031 CCGATCCGAT
20640041 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20640067 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
20640093 C
1 C
20640094 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20640285 original size:26 final size:26
Alignment explanation
Indices: 20640249--20640301 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20640239 TCAGTCGGAT
*
20640249 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
20640275 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
20640301 C
1 C
20640302 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:20641011 original size:26 final size:26
Alignment explanation
Indices: 20640973--20641025 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20640963 GCCTCAAAAT
20640973 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20640999 CTTAGAC-ATGGAATGAATTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
20641025 C
1 C
20641026 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20642954 original size:26 final size:26
Alignment explanation
Indices: 20642925--20642980 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
20642915 TGGGTTGACT
*
20642925 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
* * *
20642951 TAAGCATATGAAGTTCATTCCTAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
20642977 TAAG
1 TAAG
20642981 ATTGGACTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:20643143 original size:26 final size:26
Alignment explanation
Indices: 20643113--20643165 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20643103 GTTGGCTTAG
*
20643113 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20643139 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20643165 G
1 G
20643166 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20643176 original size:185 final size:184
Alignment explanation
Indices: 20642855--20643520 Score: 681
Period size: 196 Copynumber: 3.5 Consensus size: 184
20642845 ACCATCCGTT
* * * * * *
20642855 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGTCCGCATGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * **
20642920 TGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCTAGTCTAAGATTG
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
* * **
20642985 GACTAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGTCGGGGGGGACCGCAC
131 GACTAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACG-CAGGGGGGATCGGGC
* *
20643040 C-AGTCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
1 CGA-TCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* *
20643104 TTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
65 TTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* *
20643168 CAGACTAGACCCAGGGTTGTAGTAGTAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGATCG
129 CAGACTAGACCGA-GG--GT--T-G-CGG--CAGCA--A-GATCGACAGCACGCAGGGGGGATCG
*
20643233 GGT
182 GGC
* ** * * *
20643236 CGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCACGCTTGTTTCGTGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* *
20643301 TGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
** * * * ** * * ** * * *
20643366 GACCGGATCGAGGGCTACGATAGTAGGATCGGTAGCACGCAAGTGGGATTGGGC
131 GACTAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGATCGGGC
** * * * * *
20643420 CGATCCCCGGCTTACGCATTCTGCCTCTTTGGCCGGTTGAGCGCCTGCACACCCGTTTCATGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * *
20643485 TGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
66 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
20643521 CCCAGTCAGA
Statistics
Matches: 396, Mismatches: 68, Indels: 35
0.79 0.14 0.07
Matches are distributed among these distances:
183 3 0.01
184 106 0.27
185 119 0.30
186 2 0.01
187 3 0.01
188 2 0.01
189 1 0.00
190 1 0.00
191 2 0.01
192 2 0.01
193 1 0.00
194 5 0.01
195 2 0.01
196 130 0.33
197 17 0.04
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
CGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
GACTAGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGATCGGGC
Found at i:20643346 original size:26 final size:26
Alignment explanation
Indices: 20643309--20643361 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20643299 GTTGACTTAG
20643309 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20643335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20643361 G
1 G
20643362 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20645053 original size:184 final size:184
Alignment explanation
Indices: 20644852--20645272 Score: 535
Period size: 184 Copynumber: 2.3 Consensus size: 184
20644842 GGGTGCCCGC
* * *
20644852 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAAACGGAGTTCA
* * * * *
20644917 TTCCCAGTCTAAGATCAGACT-GGATCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGGGGGG
66 TTCCCAGTCCAAGATCAGA-TGGGACCAAGGGTTGCGACAGCAGGATCGGCAGCACACAGGGGGG
* * *
20644981 ACCGAGTCGATCCCC-GACTTACGCATTCTACCTCT-TCGACTGGCTGAGCACCCGT
130 ACCGAGCCGATCCCCAG-CTTACGCATTCTACCTCTCT-GACCGGCTGAGCACCCAT
* * * * *
20645036 ACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTGTAAGCAAACGGAGTTC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCAAACGGAGTTC
* * * *
20645100 ATTCCCAGTCCAAGATCGGATGGGACCAAGGGTTGCGAGAGGAGGATCGGCAGCACATAGGGGGG
65 ATTCCCAGTCCAAGATCAGATGGGACCAAGGGTTGCGACAGCAGGATCGGCAGCACACAGGGGGG
* * * * * *
20645165 ACTGGGCCGATCTCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCAT
130 ACCGAGCCGATCCCCAGCTTACGCATTCTACCTCTCTGACCGGCTGAGCACCCAT
*
20645220 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20645273 CCTAGTTGGA
Statistics
Matches: 200, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
183 4 0.02
184 192 0.96
185 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (184 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAAACGGAGTTCA
TTCCCAGTCCAAGATCAGATGGGACCAAGGGTTGCGACAGCAGGATCGGCAGCACACAGGGGGGA
CCGAGCCGATCCCCAGCTTACGCATTCTACCTCTCTGACCGGCTGAGCACCCAT
Found at i:20645536 original size:159 final size:159
Alignment explanation
Indices: 20645147--20646749 Score: 889
Period size: 159 Copynumber: 9.8 Consensus size: 159
20645137 AGAGGAGGAT
* * * * * * *
20645147 CGGCAGCACATAG-GGGGGACTGGGCCGATCTCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTG
1 CGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCGGGCTG
* **
20645211 AGC-ACC-CATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
66 AGCGCCCGCATAC-C-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACATCTAAGCC
* *** *
20645274 CTAGTTGGATCGAGGGTTGTGGTAGCGGGAC
129 CCAGCCAGATCGAGGGTTGTGGCAGCGGGAC
* * * * * * * **
20645305 CGGTACCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTTTACCTTTTCGGTTGGCTG
1 CGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCGGGCTG
* * * * *
20645370 AGCGCCCGCATACCCATTTCGTGGGTTGGCATAGGCATAGGGAGTTCCTTCCACATCTAAGCCCC
66 AGCGCCCGCATACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACATCTAAGCCCC
20645435 AGCCAGATCGAGGGTTGTGGCAGCGGGAC
131 AGCCAGATCGAGGGTTGTGGCAGCGGGAC
* ** * * * * * *
20645464 CGGCAGCACGTAGAGAGGGATGGGGTCGATCCCCGACTTGTGTATTATGCCTCTCCGACGGGCTC
1 CGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCGGGCTG
** * * ** * * * * *
20645529 AATGCCCGAATGCTTGTTTCGTGGGATGACTTATGCATACGGAGTTCA-TCCCCAGTGTAAGCGT
66 AGCGCCCGCATACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACA---T---C-T
* *
20645593 ATGGAGTTCATTCCCAGTCCAAGATCGGACGGGATCGAGGGTTGCTGCAG-GAGGAT
124 A---AG--C---CCCAG-CC-AGATC-GA-GGG-T----TG-TG--GCAGCG-GGAC
** * * * * * * *
20645649 CGGCAGCACACAG-GGGGGACTGGGCCGATCTCTGGCTTGCGCATTCTGCCTTTCTGGCCGGCTG
1 CGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCGGGCTG
* ** * **
20645713 AGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCC
66 AGCGCCCGCATACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACATCTAAGCCCC
** ** *
20645778 AGCTGGATCGAGGGTTGTGGCAGTAGGAT
131 AGCCAGATCGAGGGTTGTGGCAGCGGGAC
* * * ** * * * * *
20645807 CGGTAGCACGCAGAGGGGGACCGGGTCGATCCCCAACTTGTGCATTCTACCTCTCCGGCAGGTTG
1 CGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCGGGCTG
* * *
20645872 AGCGCCCGCATACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCCTTCCACGTCTAAGCCCC
66 AGCGCCCGCATACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACATCTAAGCCCC
* * *
20645937 AACCGGATCGAGGGTTGTGGTAGCGGGAC
131 AGCCAGATCGAGGGTTGTGGCAGCGGGAC
* * *
20645966 CGGCAGCACGTAGAGGGGGA-CGGAGCCGATCCCTGGCTTGCGTATTATGCCTCTCCGGCGGTCT
1 CGGCAGCACGTAGAGGGGGACCGG-GCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCGGGCT
* * * * * *
20646030 CAACGCCCG-A-ACGCTCATTTCATGGGATGACTTAGGCATACAGAGTTCATTCC-CAGTCTAAG
65 GAGCGCCCGCATAC-C-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACA-TCTAAG
** * * * *
20646092 -ATCGGATCAGATCGAGGGTTGTGGCAGCTGGAT
127 CCCCAG-CCAGATCGAGGGTTGTGGCAGCGGGAC
* * * *
20646125 CGACAGCACGTAGA-GGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTC-GGCT
1 CGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGG-CGGGCT
* * * * *
20646188 GAGCGCCCACACACTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCC-CAGTCTAAG-A
65 GAGCGCCCGCATACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACA-TCTAAGCC
* * * ** *
20646251 TCAGACC-GGTCTGAGGGTTGCGGCAGCAAGAT
129 CCAG-CCAGATC-GAGGGTTGTGGCAGCGGGAC
* * * * * *
20646283 CGGTAGCACGTAG-GGGGGACCGCGACAATCCCCGGCTTGCGCATTTTTCCTCTCCGGTC-GGCT
1 CGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGG-CGGGCT
** * * * *
20646346 GAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCCAGTCTAAGCA
65 GAGCGCCCGCATACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACA-TCTAAGC-
* * * * * * * *
20646410 TACGGAGTTCATTCCCAG-TCTAAGATTGAACCGGACCGAGGGTTAC
128 --C-----CCA--GCCAGATCGAGGGTTG---TGG-CAGCGGG--AC
* * * * * * *
20646456 GGTAGCAGGATAGGCAGCACGTAGGGGGATCGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCC
1 CG--GCA-G-CA--C-GTA-G-AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC
** * * * **
20646521 GGTTGGCTAAGCGCCCGCATACCCGTTTCGTGGGTTGGCTTAGGTATA-GGAAGTTCATTCCATG
57 GGCGGGCTGAGCGCCCGCATACCCGTTTCATGGGTTGGCTTAGGCATACGG-AGTTCATTCCACA
* * *
20646585 TCTAAGCCCCAGCCGGA-CTGACGGTTGTGGCAGTGGGAC
121 TCTAAGCCCCAGCCAGATC-GAGGGTTGTGGCAGCGGGAC
* ** * * * * * * *
20646624 CGACAGCGTGCTA-AGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGGCTCTCCGACCGACT
1 CGGCAGCACG-TAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCGGGCT
* * * *
20646688 GAGTGCCCGCACACTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATC-TCTAAGC
65 GAGCGCCCGCATACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-CATCTAAGC
20646750 ATACAGAGTT
Statistics
Matches: 1110, Mismatches: 253, Indels: 164
0.73 0.17 0.11
Matches are distributed among these distances:
157 8 0.01
158 284 0.26
159 514 0.46
160 7 0.01
161 8 0.01
162 1 0.00
164 1 0.00
165 4 0.00
166 5 0.00
167 10 0.01
168 13 0.01
169 2 0.00
170 14 0.01
171 5 0.00
173 12 0.01
174 7 0.01
175 11 0.01
176 3 0.00
177 4 0.00
178 3 0.00
179 2 0.00
180 3 0.00
181 1 0.00
182 4 0.00
183 87 0.08
184 76 0.07
185 21 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
CGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCGGGCTG
AGCGCCCGCATACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACATCTAAGCCCC
AGCCAGATCGAGGGTTGTGGCAGCGGGAC
Found at i:20645933 original size:502 final size:502
Alignment explanation
Indices: 20644939--20646091 Score: 1581
Period size: 502 Copynumber: 2.3 Consensus size: 502
20644929 GATCAGACTG
* * * * * * * * * *
20644939 GATCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAG-GGGGGACCGAGTCGATCCCCGACTTAC
1 GATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGAGGGACGGAGCCGATCCCCGACTTGC
* * * * * * * * * * *
20645003 GCATTCTACCTCTTCGACTGGCTGAGCACCCGTACGCTTGTTTTGTGGGTTGACTTAGGCATACG
66 GTATTATGCCTCTCCGACGGGCTCAACGCCCGAACGCTTGTTTCGTGGGATGACTTAGGCATACG
*
20645068 GAGTTCATCCCCAGTGTAAGCAAACGGAGTTCATTCCCAGTCCAAGATCGGATGGGACCAAGGGT
131 GAGTTCATCCCCAGTGTAAGCAAACGGAGTTCATTCCCAGTCCAAGATCGGACGGGACCAAGGGT
* *
20645133 TGCGAGAGGAGGATCGGCAGCACATAGGGGGGACTGGGCCGATCTCCAGCTTGCGCATTCTGCCT
196 TGCGACAGGAGGATCGGCAGCACACAGGGGGGACTGGGCCGATCTCCAGCTTGCGCATTCTGCCT
* *
20645198 CTCTGGCCGGCTGAGCACCCATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
261 CTCTGGCCGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
20645263 ATGTCTAAGCCCTAGTTGGATCGAGGGTTGTGGTAGCGGGACCGGTACCACGTAGAGGGGGACCG
326 ATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGCAGGACCGGTACCACGCAGAGGGGGACCG
** * * * ** *
20645328 GGTCGATCCCCGGCTTGCGCATTTTACCTTTTCGGTTGGCTGAGCGCCCGCATACCCATTTCGTG
391 GGTCGATCCCCAACTTGCGCATTCTACCTCTCCGGCAGGCTGAGCGCCCGCATACCCATTTCATG
*
20645393 GGTTGGCATAGGCATAGGGAGTTCCTTCCACATCTAAGCCCCAGCCA
456 GGTTGGCATAGGCATAGGGAGTTCCTTCCACATCTAAGCCCCAACCA
* * * *
20645440 GATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGAGGGATGGGGTCGATCCCCGACTTGT
1 GATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGAGGGACGGAGCCGATCCCCGACTTGC
* * *
20645505 GTATTATGCCTCTCCGACGGGCTCAATGCCCGAATGCTTGTTTCGTGGGATGACTTATGCATACG
66 GTATTATGCCTCTCCGACGGGCTCAACGCCCGAACGCTTGTTTCGTGGGATGACTTAGGCATACG
** * * *
20645570 GAGTTCATCCCCAGTGTAAGCGTATGGAGTTCATTCCCAGTCCAAGATCGGACGGGATCGAGGGT
131 GAGTTCATCCCCAGTGTAAGCAAACGGAGTTCATTCCCAGTCCAAGATCGGACGGGACCAAGGGT
**
20645635 TGCTG-CAGGAGGATCGGCAGCACACAGGGGGGACTGGGCCGATCTCTGGCTTGCGCATTCTGCC
196 TGC-GACAGGAGGATCGGCAGCACACAGGGGGGACTGGGCCGATCTCCAGCTTGCGCATTCTGCC
* * *
20645699 TTTCTGGCCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTC
260 TCTCTGGCCGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
20645764 CATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGTAGGATCGGTAGCACGCAGAGGGGGACC
325 CATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGCAGGACCGGTACCACGCAGAGGGGGACC
* * *
20645829 GGGTCGATCCCCAACTTGTGCATTCTACCTCTCCGGCAGGTTGAGCGCCCGCATACCCGTTTCAT
390 GGGTCGATCCCCAACTTGCGCATTCTACCTCTCCGGCAGGCTGAGCGCCCGCATACCCATTTCAT
* * *
20645894 GGGTTGGCTTAGGCATAGGGAGTTCCTTCCACGTCTAAGCCCCAACCG
455 GGGTTGGCATAGGCATAGGGAGTTCCTTCCACATCTAAGCCCCAACCA
* * * *
20645942 GATCGAGGGTTGTGGTAGCGGGACCGGCAGCACGTAGAGGGGGACGGAGCCGATCCCTGGCTTGC
1 GATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGAGGGACGGAGCCGATCCCCGACTTGC
* * ** * *
20646007 GTATTATGCCTCTCCGGCGGTCTCAACGCCCGAACGCTCATTTCATGGGATGACTTAGGCATACA
66 GTATTATGCCTCTCCGACGGGCTCAACGCCCGAACGCTTGTTTCGTGGGATGACTTAGGCATACG
* *
20646072 GAGTTCATTCCCAGTCTAAG
131 GAGTTCATCCCCAGTGTAAG
20646092 ATCGGATCAG
Statistics
Matches: 567, Mismatches: 83, Indels: 3
0.87 0.13 0.00
Matches are distributed among these distances:
501 31 0.05
502 535 0.94
503 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (502 bp):
GATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGAGGGACGGAGCCGATCCCCGACTTGC
GTATTATGCCTCTCCGACGGGCTCAACGCCCGAACGCTTGTTTCGTGGGATGACTTAGGCATACG
GAGTTCATCCCCAGTGTAAGCAAACGGAGTTCATTCCCAGTCCAAGATCGGACGGGACCAAGGGT
TGCGACAGGAGGATCGGCAGCACACAGGGGGGACTGGGCCGATCTCCAGCTTGCGCATTCTGCCT
CTCTGGCCGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
ATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGCAGGACCGGTACCACGCAGAGGGGGACCG
GGTCGATCCCCAACTTGCGCATTCTACCTCTCCGGCAGGCTGAGCGCCCGCATACCCATTTCATG
GGTTGGCATAGGCATAGGGAGTTCCTTCCACATCTAAGCCCCAACCA
Found at i:20646269 original size:158 final size:156
Alignment explanation
Indices: 20645595--20646407 Score: 819
Period size: 158 Copynumber: 5.1 Consensus size: 156
20645585 GTAAGCGTAT
* * * * *
20645595 GGAGTTCATTCCCAGTCCAAGATCGGACGGGATCGAGGGTTGCT-GCAGGAGGATCGGCAGCACA
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTG-TGGCAGCAGGATCGGCAGCACG
* * * * * * *
20645659 CAGGGGGGACTGGGCCGATCTCTGGCTTGCGCATTCTGCCTTTCTGGCCGGCTGAGCACCCGCAC
65 TAGAGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCGCCCGCAC
*
20645724 GCCCGTTTCATGGGTTGGCTTAGGCATAC
128 GCTCGTTTCATGGGTTGGCTTAGGCATAC
* ** * * *
20645753 GGAGTTTATT-CCATGTCTAAGCCCCAG-CTGGATCGAGGGTTGTGGCAGTAGGATCGGTAGCAC
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* * ** * * *
20645816 GCAGAGGGGGACCGGGTCGATCCCCAACTTGTGCATTCTACCTCTCCGGCAGGTTGAGCGCCCGC
64 GTAGA-GGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC-GGCTGAGCGCCCGC
** * *
20645881 ATACCCGTTTCATGGGTTGGCTTAGGCATAG
126 ACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* ** * * *
20645912 GGAGTTCCTT-CCACGTCTAAGCCCCA-ACCGGATCGAGGGTTGTGGTAGCGGGACCGGCAGCAC
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* * * * * *
20645975 GTAGAGGGGGACGGAGCCGATCCCTGGCTTGCGTATTATGCCTCTCCGGCGGTCTCAACGCCCGA
64 GTAGA-GGGGACGG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCGG-CTGAGCGCCCGC
* * *
20646040 ACGCTCATTTCATGGGATGACTTAGGCATAC
126 ACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * * * * *
20646071 AGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGTGGCAGCTGGATCGACAGCACGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
* * *
20646136 AGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACA
66 AGAGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCGCCCGCACG
*
20646201 CTCGTTTCTTGGGTTGGCTTAGGCATAC
129 CTCGTTTCATGGGTTGGCTTAGGCATAC
* * *
20646229 GGAGTTCATTCCCAGTCTAAGATCAGACCGG-TCTGAGGGTTGCGGCAGCAAGATCGGTAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGTGGCAGCAGGATCGGCAGCACG
* * * * * *
20646293 TAGGGGGGACCGCGACAATCCCCGGCTTGCGCATTTTTCCTCTCCGGTCGGCTGAGCGCCCGCAC
65 TAGAGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCGCCCGCAC
* *
20646358 GCTCATTTCATGGGTTGACTTAGGCATAC
128 GCTCGTTTCATGGGTTGGCTTAGGCATAC
*
20646387 GGAGTTCATCCCCAGTCTAAG
1 GGAGTTCATTCCCAGTCTAAG
20646408 CATACGGAGT
Statistics
Matches: 541, Mismatches: 100, Indels: 28
0.81 0.15 0.04
Matches are distributed among these distances:
157 6 0.01
158 278 0.51
159 253 0.47
160 4 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
AGAGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCGGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATAC
Found at i:20646411 original size:26 final size:26
Alignment explanation
Indices: 20646381--20646433 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20646371 GTTGACTTAG
20646381 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20646407 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20646433 G
1 G
20646434 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20646590 original size:183 final size:184
Alignment explanation
Indices: 20646223--20646591 Score: 449
Period size: 183 Copynumber: 2.0 Consensus size: 184
20646213 GTTGGCTTAG
* * * * *
20646223 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGTCTGAGGGTTGCGGCAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAAGATAGGCA
* * *
20646288 GCACGTAGGGGGGACCGCGACAATCCCCGGCTTGCGCATTTTTCCTCTCCGGTCGGCTGAGCGCC
66 GCACGTAGGGGGGACCGCGACAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
* *
20646353 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
131 CGCACACCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * *
20646407 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGACCGAGGGTTACGGTAGCAGGATAGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGGCAGCAAGATAGGC
* * * * * * *
20646471 AGCACGTA-GGGGGATCGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGTTGGCTAAGCGC
65 AGCACGTAGGGGGGACCGCGACAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
* * * * * *
20646535 CCGCATACCCGTTTCGTGGGTTGGCTTAGGTATA-GGAAGTTCAT-TCCATGTCTAA
130 CCGCACACCCATTTCATGGGTTGACTTAGGCATACGG-AGTTCATCCCCA-GTCTAA
20646590 GC
1 GC
20646592 CCCAGCCGGA
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
182 5 0.03
183 89 0.57
184 62 0.40
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAAGATAGGCA
GCACGTAGGGGGGACCGCGACAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
CGCACACCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:20646750 original size:341 final size:342
Alignment explanation
Indices: 20646065--20646775 Score: 858
Period size: 341 Copynumber: 2.1 Consensus size: 342
20646055 GATGACTTAG
* * * ** * *
20646065 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGTGGCAGCTGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATAGACA
*
20646130 GCACGTAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCC
66 GCACGTAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTAAGCGCC
* * *
20646195 CACACACTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
131 CACACACCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGG
* * * ** * *
20646260 TCTGAGGGTTGCGGCAGCAAGATCGGTAGCACGTAGGGGGGACCGCGACAATCCCCGGCTTGCGC
196 ACTGACGGTTGCGGCAGCAAGACCGACAGCACGTAAGGGGGACCGCGACAATCCCCAGCTTGCGC
* * ** * *
20646325 ATTTTTCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGA
261 ATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGA
*
20646390 GTTCATCCCCAGTCTAA
326 GTTCATCCCCACTCTAA
* * * * *
20646407 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTACGGTAGCAGGATAGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATAGACA
* ** *
20646472 GCACGTAG-GGGGATCGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGTTGGCTAAGCGCC
66 GCACGTAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTAAGCGCC
* * * *
20646536 CGCATACCCGTTTCGTGGGTTGGCTTAGGTATA-GGAAGTTCATT-CCATGTCTAAGCCCCAG-C
131 CACACACCCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCCA-GTCTAAG-ACCAGAC
* *** ** * * *
20646598 CGGACTGACGGTTGTGGCAGTGGGACCGACAGCGTGCTAAGGGGGACCGGGTCGATCCCCAGCTT
193 CGGACTGACGGTTGCGGCAGCAAGACCGACAGCACG-TAAGGGGGACCGCGACAATCCCCAGCTT
* * * *
20646663 GCGCATTCTGGCTCTCCGACCGACTGAGTGCCCGCACACTCGTTTCGTGGGTTG-CTTAGGCATA
257 GCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATA
*
20646727 CGGAGTTCAT-TCCATCTCTAA
322 CGGAGTTCATCCCCA-CTCTAA
*
20646748 GCATACAGAGTTCATTCCCAGTTTAAGA
1 GCATACAGAGTTCATTCCCAGTCTAAGA
20646776 GTCTGAGCCA
Statistics
Matches: 310, Mismatches: 54, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
340 8 0.03
341 171 0.55
342 131 0.42
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (342 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATAGACA
GCACGTAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTAAGCGCC
CACACACCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGG
ACTGACGGTTGCGGCAGCAAGACCGACAGCACGTAAGGGGGACCGCGACAATCCCCAGCTTGCGC
ATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGA
GTTCATCCCCACTCTAA
Found at i:20647482 original size:26 final size:26
Alignment explanation
Indices: 20647446--20647498 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20647436 GTTGACTTAG
20647446 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20647472 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20647498 G
1 G
20647499 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20647836 original size:159 final size:155
Alignment explanation
Indices: 20647472--20647911 Score: 447
Period size: 159 Copynumber: 2.8 Consensus size: 155
20647462 CCCAGTCTAA
* **
20647472 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATC-GAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GACTGAGGGTTGCGGTAGCAGGATCAG-C
* * * * * *
20647536 AGCACGCAGAGGGGATCGGGCTGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGC
64 AGCACGTAGAGGGGATC-GGCCGATCCTCG-CTTGCACATTATGCCTCTCCGGTCGGCTCAGCGC
* * *
20647601 CCGCACGCCCGTTTCATGGGTTGGCTTAG
127 CCGAACACCCGTTTCATGGGTTGACTTAG
* ** * * *
20647630 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCGG-TCGAACCT-AAGGTTGCGGTAGCGGGACCA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCG-A-CTGAGGGTTGCGGTAGCAGGATCA
* *
20647692 GCAGCACGTAGAGAGGGATCGGCCCGATCCCCAGCTTGCACATTATGCCTCTTCGGTCGGCTCAG
62 GCAGCACGTAGAG-GGGATCGG-CCGATCCTC-GCTTGCACATTATGCCTCTCCGGTCGGCTCAG
** *
20647757 CGCCCGAACACTTGTTTCGTGGGTTGACTTAG
124 CGCCCGAACACCCGTTTCATGGGTTGACTTAG
* * * *
20647789 GCATACGGAGTTCATTCCCAATCTAAGATAGGATCAGACTGAGGGTTGCGGTAGCAAGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GACTGAGGGTTGCGGTAGCAGGATCAGCA
* * *
20647854 ACACGCTGGGGGGGATCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCGGTCGGC
65 GCACG-TAGAGGGGATCG-GCCGATCCTC-GCTTGCACATTATGCCTCTCCGGTCGGC
20647912 CTCTCCGACT
Statistics
Matches: 229, Mismatches: 39, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
157 4 0.02
158 57 0.25
159 159 0.69
160 9 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGACTGAGGGTTGCGGTAGCAGGATCAGCAG
CACGTAGAGGGGATCGGCCGATCCTCGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCGCCCGA
ACACCCGTTTCATGGGTTGACTTAG
Found at i:20648914 original size:26 final size:26
Alignment explanation
Indices: 20648864--20648916 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20648854 GTTGACTTAG
* *
20648864 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATATAGAGTTCATCCCTAATCTAA
20648890 GCATATAGAGTTCATTCCC-AATCTAA
1 GCATATAGAGTTCA-TCCCTAATCTAA
20648916 G
1 G
20648917 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCTAATCTAA
Found at i:20649756 original size:26 final size:26
Alignment explanation
Indices: 20649720--20649770 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20649710 TGGCTTAGGT
20649720 ATACGAAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
20649746 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
20649771 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:20651512 original size:25 final size:25
Alignment explanation
Indices: 20651477--20651526 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
20651467 GTTGACTTAG
20651477 GCATACAGAGTTCATCCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
* * *
20651502 GCATACGGAGTTCTTTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
20651527 AGATCGGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCCAGTCTA
Found at i:20651710 original size:535 final size:536
Alignment explanation
Indices: 20650852--20651841 Score: 1296
Period size: 535 Copynumber: 1.8 Consensus size: 536
20650842 GACAACACGT
* * * * *
20650852 AGGGGGATCAGGCTGGTCCCTAGCTTGCGTATTCTGCCTCTCCGACCGATTGAATGCCCGCACAC
1 AGGGGGATCAGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGACTGAACGCCCGCACAC
* * * *
20650917 TCATTTTGTGGATTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATATAGAGTTCATTTC
66 TCATTTCGTGGATTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTC
* * * *
20650982 TAGTGTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACACAAGGGTGACCGG
131 CAGTCTAAGATCAGATCGGACCGAGGGTTACAGCAGCAGGAT---CAGCACACAAGGGGGACCGG
** * * * *
20651047 GCCGATCCCTGGCTTGTGCATTTGCCTCACCGGTCGGTTGAGCTCCCGCACGCCCGTTTCGTGGG
193 GCCGATCCCTGGCTTACGCATTTGCCTCACCGCTCGGCTGAGCACCCGCACGCCCATTTCGTGGG
* * * * * * * *
20651112 TTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTCGGACCGATGGTTGTGGCAGTG
258 TTGCCTTAGGCATAGAGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGTG
* * *
20651177 GGACCGACAGCATGTAAAAGGTGATCGGA-CCGAT-CCTCGACTTTCGAATTCTGCCTCTCCGGT
323 GGACCGACAGCATGCAAAAGGGGA-CGGAGCCGATCCCT-GACTTTCGAATTCTGCCTATCCGGT
* * *
20651240 CGGCTGAGCACTCACAAGCTCGTTTTGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTA
386 CAGCTGAGCACCCACAAGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTA
20651305 AGCTTAGGGAGTTCATTCCCAGTCTAAGATTGGACTGAACCAAGGGTTGCGATAGACTTACTAGT
451 AGCTTAGGGAGTTCATTCCCAGTCTAAGATTGGACTGAACCAAGGGTTGCGATAGACTTACTAGT
20651370 AGCAGGATCAGCAGCACGCAG
516 AGCAGGATCAGCAGCACGCAG
* * * * * *
20651391 AGGGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCC-AGTCGACTGAGCGCCCGCACG
1 AGGGGGATCAGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGA-CCGACTGAACGCCCGCACA
* * *
20651455 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCT-AGCATACGGAGTTC-TTT
65 CTCATTTCGTGGATTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTT
* * * *
20651518 CCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGTAGGAT-AGCACA-AAGGGGGGATCGG
130 -CCAGTCTAAGATCAGATCGGACCGAGGGTTACAGCAGCAGGATCAGCACACAA-GGGGGACCGG
**
20651581 GCCGATCTCC-GGCTTACGCATTATGCCTTTCCGACT-GGCTGAGCACCCGCACGCCCATTTCGT
193 GCCGATC-CCTGGCTTACGCATT-TGCCTCACCG-CTCGGCTGAGCACCCGCACGCCCATTTCGT
20651644 GGGTTGCCTTAGGCATAGAGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCA
255 GGGTTGCCTTAGGCATAGAGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCA
** * * * * *
20651709 GTGGGACCGGTAGCATGCAAAGGGGGACTGAGTCGATCCCTGGCTTTCGCATTCTGCCTATCCGG
320 GTGGGACCGACAGCATGCAAAAGGGGACGGAGCCGATCCCTGACTTTCGAATTCTGCCTATCCGG
* * *
20651774 TCAGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCT
385 TCAGCTGAGCACCCACAAGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCT
20651839 AAG
450 AAG
20651842 AGTTTGAGCC
Statistics
Matches: 385, Mismatches: 58, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
533 2 0.01
534 34 0.09
535 200 0.52
536 4 0.01
537 3 0.01
538 50 0.13
539 92 0.24
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (536 bp):
AGGGGGATCAGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGACTGAACGCCCGCACAC
TCATTTCGTGGATTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTC
CAGTCTAAGATCAGATCGGACCGAGGGTTACAGCAGCAGGATCAGCACACAAGGGGGACCGGGCC
GATCCCTGGCTTACGCATTTGCCTCACCGCTCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTG
CCTTAGGCATAGAGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGTGGGA
CCGACAGCATGCAAAAGGGGACGGAGCCGATCCCTGACTTTCGAATTCTGCCTATCCGGTCAGCT
GAGCACCCACAAGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTT
AGGGAGTTCATTCCCAGTCTAAGATTGGACTGAACCAAGGGTTGCGATAGACTTACTAGTAGCAG
GATCAGCAGCACGCAG
Found at i:20652541 original size:26 final size:26
Alignment explanation
Indices: 20652511--20652563 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20652501 GTTGACTTAG
*
20652511 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20652537 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20652563 G
1 G
20652564 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20652766 original size:21 final size:21
Alignment explanation
Indices: 20652718--20652759 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
20652708 AAGCCCCAAC
*
20652718 CAGATCGAGGGTTGTGGTAGT
1 CAGACCGAGGGTTGTGGTAGT
20652739 CAGACCGAGGGTTGTGGTAGT
1 CAGACCGAGGGTTGTGGTAGT
20652760 GGGACCGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.12, G:0.43, T:0.26
Consensus pattern (21 bp):
CAGACCGAGGGTTGTGGTAGT
Found at i:20653607 original size:26 final size:26
Alignment explanation
Indices: 20653561--20653613 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20653551 GTTGACTTAG
*
20653561 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
20653587 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20653613 G
1 G
20653614 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20653882 original size:26 final size:26
Alignment explanation
Indices: 20653846--20653898 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20653836 TTTGGCTTAG
* *
20653846 GCATATGGAGTTCATTCT-ATGTCTAA
1 GCATACGGAGTTCAATCTCA-GTCTAA
20653872 GCATACGGAGTTCAATCTCAGTCTAA
1 GCATACGGAGTTCAATCTCAGTCTAA
20653898 G
1 G
20653899 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCAATCTCAGTCTAA
Found at i:20654385 original size:96 final size:96
Alignment explanation
Indices: 20654275--20654466 Score: 384
Period size: 96 Copynumber: 2.0 Consensus size: 96
20654265 AATAAAAGGA
20654275 TCACCTCTACCAATTTTTCGAACAAAACTCTTTCTAAAAAAATTTTAAAAATCCCAAACCGCAAA
1 TCACCTCTACCAATTTTTCGAACAAAACTCTTTCTAAAAAAATTTTAAAAATCCCAAACCGCAAA
20654340 AAGTTTCAAAAATCATGAAAAATAAAAAACG
66 AAGTTTCAAAAATCATGAAAAATAAAAAACG
20654371 TCACCTCTACCAATTTTTCGAACAAAACTCTTTCTAAAAAAATTTTAAAAATCCCAAACCGCAAA
1 TCACCTCTACCAATTTTTCGAACAAAACTCTTTCTAAAAAAATTTTAAAAATCCCAAACCGCAAA
20654436 AAGTTTCAAAAATCATGAAAAATAAAAAACG
66 AAGTTTCAAAAATCATGAAAAATAAAAAACG
20654467 GGTCGTCTTG
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 96 1.00
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.25
Consensus pattern (96 bp):
TCACCTCTACCAATTTTTCGAACAAAACTCTTTCTAAAAAAATTTTAAAAATCCCAAACCGCAAA
AAGTTTCAAAAATCATGAAAAATAAAAAACG
Found at i:20654700 original size:26 final size:26
Alignment explanation
Indices: 20654664--20654716 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20654654 GTTGACTTAG
20654664 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* * *
20654690 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
20654716 G
1 G
20654717 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:20655292 original size:343 final size:342
Alignment explanation
Indices: 20654630--20655400 Score: 958
Period size: 343 Copynumber: 2.3 Consensus size: 342
20654620 TGGTTGGTTG
* * * * *
20654630 AGCGTCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGCCTAAGCATA
1 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
** *
20654695 TGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGAGCAAGATCGGCAGCACGC
66 TGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGGAGCAAGATCAGCAGCACGC
* * * * * *
20654760 AGGGGGAACCGAGTCGATCCCTGGCTTGCGCATTCTGCCCTTCCAACCGACTGAGTGCTCGCATG
131 AGGGGGAACCGAGCCGATCCCTGGCTTGCGCATTCTACCCTTCCAACCGACTAAGCGCCCGCACG
** *
20654825 CCCGTTTCATGGATTGGCTAAGGCATAAGAAGTTTGTTCCATTTCTAAGCCCTAGCCAGACCGAG
196 CCCGTTTCATGGATTGGCTAAGGCATAAGAAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAG
* ** **
20654890 GGTTGTGGCAGTGGGACCAACAGCACGCAGAAGGGGATCGAGCTGATCCTTGACTTGCGCATTAT
261 GGTTGTGGCAGCGGGACCAACAGCACGCAGAAGGGGATCGAGCCAATCCCCGACTTGCGCATTAT
* * *
20654955 GCCTCTTCG-GTCGGCTT
326 GCCTCTCCGACT-GGCTC
* * *
20654972 AGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGAATTTCATTCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
20655037 TGGAGTTCATTCCCAGTCTAAGATCAAATTGGACCGAGGGTTACGGCAGCAGGATCAGCAGCACG
66 TGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGG-AGCAAGATCAGCAGCACG
* * * * *
20655102 CAGGAGGG-ACCGGGCCGATCCCTGGCTTGTGCGTTCTA-CCTCTCCGATCGACTAAGCGCCCGC
130 CAGG-GGGAACCGAGCCGATCCCTGGCTTGCGCATTCTACCCT-TCCAACCGACTAAGCGCCCGC
* * * * *
20655165 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACC
193 ACGCCCGTTTCATGGATTGGCTAAGGCATAAGAAGTTCATTCCATGTCTAAGCCCTAGCCAGACC
* * *** * * *
20655230 GATGGTTGTGGTAGCGGGACCGGTAGCACGTAG-AGAGGGATCGGGCCAATCCCCGGCTTGCGCA
258 GAGGGTTGTGGCAGCGGGACCAACAGCACGCAGAAG-GGGATCGAGCCAATCCCCGACTTGCGCA
*
20655294 TTCTGCCTCTCCGACTGGCTC
322 TTATGCCTCTCCGACTGGCTC
* * * *
20655315 AGCGCCCGCACACTCATTTCGTGGTTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAT
1 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCAT
* *
20655379 ATGCAGTTCACTCCCAGTCTAA
65 ATGGAGTTCATTCCCAGTCTAA
20655401 TAGTTTGAGC
Statistics
Matches: 365, Mismatches: 58, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
342 108 0.30
343 253 0.69
344 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (342 bp):
AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
TGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGGAGCAAGATCAGCAGCACGC
AGGGGGAACCGAGCCGATCCCTGGCTTGCGCATTCTACCCTTCCAACCGACTAAGCGCCCGCACG
CCCGTTTCATGGATTGGCTAAGGCATAAGAAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAG
GGTTGTGGCAGCGGGACCAACAGCACGCAGAAGGGGATCGAGCCAATCCCCGACTTGCGCATTAT
GCCTCTCCGACTGGCTC
Found at i:20656106 original size:26 final size:26
Alignment explanation
Indices: 20656070--20656122 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20656060 GTTAACTTAG
20656070 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* * *
20656096 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
20656122 G
1 G
20656123 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:20656457 original size:159 final size:160
Alignment explanation
Indices: 20656293--20656598 Score: 366
Period size: 160 Copynumber: 1.9 Consensus size: 160
20656283 CAGCCAGACC
* * * * *** *
20656293 GAGGGTTGTGGCAGCGGGATCGACAGCACGTAAAGG-GGGATCGG-GTTGATCCTCGACTTACGT
1 GAGGGTTATGGCAGCAGGATCGACAGCACATAAAGGAGGGACCGGACCGGATCC-CGACTTACGC
* * * *
20656356 ATTTTGCCTCTTCGATCGGCTCAACACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGA
65 ATTCTGCCTCTCCGATCGACTCAACACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAAA
*
20656421 TTTCATTCCC-AGTCTAAGATCAGATCGGACT
130 GTTCA-TCCCTAGTCTAAGATCAGATCGGACT
** * * *
20656452 GAGGGTTATGGCAGCAGGATCGACAGCACATATGGGAGGGACCGGACCGGTTCCCGATTTATGCA
1 GAGGGTTATGGCAGCAGGATCGACAGCACATAAAGGAGGGACCGGACCGGATCCCGACTTACGCA
* * * * *
20656517 TTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAAAG
66 TTCTGCCTCTCCGATCGACTCAACACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAAAG
20656582 TTCATCCCTAGTCTAAG
131 TTCATCCCTAGTCTAAG
20656599 CATACGGAGT
Statistics
Matches: 121, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
159 35 0.29
160 82 0.68
161 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (160 bp):
GAGGGTTATGGCAGCAGGATCGACAGCACATAAAGGAGGGACCGGACCGGATCCCGACTTACGCA
TTCTGCCTCTCCGATCGACTCAACACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAAAG
TTCATCCCTAGTCTAAGATCAGATCGGACT
Found at i:20656602 original size:26 final size:26
Alignment explanation
Indices: 20656572--20656624 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20656562 GTTGACTTAG
20656572 GCATACAAAGTTCA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
**
20656598 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
20656624 G
1 G
20656625 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:20656783 original size:184 final size:185
Alignment explanation
Indices: 20656412--20656760 Score: 427
Period size: 184 Copynumber: 1.9 Consensus size: 185
20656402 GTTGACTTAG
* * *
20656412 GCATACAGATTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTATGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTACGACAGCAGGATCGACA
* * * * * *
20656477 GCACATATGGGAGGGACCGGACCGGTTCCCGATTTATGCATTCTGCCTCTCCGGTCGACTGAGCG
66 GCACACAT-GGAGGGACCGGACCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGACTGAACG
20656542 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCTAGTCTAA
130 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCTAGTCTAA
* * * *
20656598 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACTGATGGTTACGACAGTAGGATCGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATC-GGACTGAGGGTTACGACAGCAGGATCGAC
* * * * **
20656662 AGCACGCAT-GAGGGACCGTG-CTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTTGGTTGAAC
65 AGCACACATGGAGGGACCG-GACCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGACTGAAC
* * * *
20656725 GCCTGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATA
129 GCCCGCACGCTC-ATTTCATGGGTTGACTTAGGCATA
20656761 GGGAGTTCAT
Statistics
Matches: 137, Mismatches: 23, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
183 1 0.01
184 72 0.53
185 2 0.01
186 62 0.45
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTACGACAGCAGGATCGACA
GCACACATGGAGGGACCGGACCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGACTGAACGC
CCGCACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCTAGTCTAA
Found at i:20657140 original size:26 final size:26
Alignment explanation
Indices: 20657110--20657162 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20657100 GTTGACTTAG
*
20657110 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20657136 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20657162 G
1 G
20657163 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20657248 original size:196 final size:196
Alignment explanation
Indices: 20656889--20657249 Score: 445
Period size: 196 Copynumber: 1.8 Consensus size: 196
20656879 CAGCGCCCGA
** * * *
20656889 ACGCTCATTTCAAGGGTTGGTTTAGGCATACATAGTTTATTCCATGTCTAAGCATACGGAGTTCA
1 ACGCTCATTTCAAGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGGAGTTCA
* * * * * *
20656954 TTCCTAGTCTAAGATCGGACCTGACCAAGGGTTGCAACAGTAGGATCGGCAGCACACAGGGGGTA
66 TTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAACAGTAGGATCGACAGCACACAGGGGGGA
** * ** *
20657019 CCGAGCTGATCCCTAGCTTGTGCATTTTGCCTCTCCGATCGACCTCTCCGACCGATGAACGCCTG
131 CCGAGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGATCGACCTCTCCGACCGATGAACGCCTG
20657084 C
196 C
* * * *
20657085 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTTTAAGCATATGGAGTTC
1 ACGCTCATTTCAAGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCATACGGAGTTC
* * * ** *
20657149 ATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTATGACAGTAGGATCGACAGCACGCAGGGGGG
65 ATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAACAGTAGGATCGACAGCACACAGGGGGG
* *
20657214 ACCGTGCCAATCCCCGGCTTGCACATTCTGCCTCTC
130 ACCGAGCCAATCCCCAGCTTGCACATTCTGCCTCTC
20657250 TGGTCGACTG
Statistics
Matches: 135, Mismatches: 29, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
196 132 0.98
197 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.25
Consensus pattern (196 bp):
ACGCTCATTTCAAGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAACAGTAGGATCGACAGCACACAGGGGGGA
CCGAGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGATCGACCTCTCCGACCGATGAACGCCTG
C
Found at i:20657603 original size:157 final size:157
Alignment explanation
Indices: 20657191--20657638 Score: 481
Period size: 157 Copynumber: 2.8 Consensus size: 157
20657181 TTATGACAGT
*
20657191 AGGATCGACAGCACGCAGGGGGGACCGTGCCAATCCCCGGCTTGC-ACATTCTGCCTCTCTGGTC
1 AGGATCGACAGCACGCAGGGGGGACCG-GCCAATCCCCGGCTTGCGA-ATTCTGCCTCTCTGGCC
* * * * * *
20657255 GACTGAGCGCCTGCACGC-CTGTTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
64 GGCTGAGCGCCCGAACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* ** * *
20657319 AGCCCCAGCCAGACCGAGGGTTGTGGTAGC
128 AGCACCAGCCAGACCGAGGGTTGCAGCAAC
* * * * * * * *
20657349 GGGATCGGCAGCACGTAGTGGGGGACCGGGCTAATCCTCGGCTTGTGCATTATGCCTCTCTGGCC
1 AGGATCGACAGCACGCAG-GGGGGACC-GGCCAATCCCCGGCTTGCGAATTCTGCCTCTCTGGCC
* * * * * *
20657414 GGCTCAGCACCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCA-GTCTAA
64 GGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
20657478 G-ATCAGACCAGACTGAGGGTTGCAGCAAC
129 GCACCAG-CCAGACCGAGGGTTGCAGCAAC
* * * * * *
20657507 AGGATCGACAGCACGCAGGGGGGACCAGGTCAGTCCCCGACTTACGAATTCTACCTCTCCGGCCG
1 AGGATCGACAGCACGCAGGGGGGACC-GGCCAATCCCCGGCTTGCGAATTCTGCCTCTCTGGCCG
* *
20657572 GCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
20657637 CA
130 CA
20657639 TACGGAGTTT
Statistics
Matches: 232, Mismatches: 51, Indels: 13
0.78 0.17 0.04
Matches are distributed among these distances:
157 87 0.38
158 61 0.26
159 82 0.35
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGGATCGACAGCACGCAGGGGGGACCGGCCAATCCCCGGCTTGCGAATTCTGCCTCTCTGGCCGG
CTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ACCAGCCAGACCGAGGGTTGCAGCAAC
Found at i:20657639 original size:26 final size:26
Alignment explanation
Indices: 20657610--20657662 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20657600 GTTGGCTTAG
20657610 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20657636 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20657662 G
1 G
20657663 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20657836 original size:26 final size:26
Alignment explanation
Indices: 20657806--20657858 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20657796 GTTGACTTAG
*
20657806 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
** *
20657832 GCATATGGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
20657858 G
1 G
20657859 TTTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:20657938 original size:196 final size:196
Alignment explanation
Indices: 20657579--20657944 Score: 464
Period size: 196 Copynumber: 1.9 Consensus size: 196
20657569 CCGGCTGAGT
* * * * * *
20657579 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
1 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGG
* * ***
20657644 AGTTTATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGTAGGATCGGTAGCACACAG
66 AGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGACAGTAGGATCAACAGCACACAG
*
20657709 AAGGGACCGGGCCGATCCTCGACTTGTGCATTCTACCTCTCCGACCGGCCTCTTTGGCCGAGGAG
131 AAGGGACCGGGCCGATCCTCGACTTGCGCATTCTACCTCTCCGACCGGCCTCTTTGGCCGAGGAG
20657774 C
196 C
*
20657775 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCC-TAGTCTAAGCATATG
1 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAT-GTCTAAGCATACG
* * * * * * ** *
20657839 GAGTTCATTCCTAATCTAAGTTTGGATCGGATCGAGGGTTGCGGTAGTAGGATCAACAGCACGCA
65 GAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGACAGTAGGATCAACAGCACACA
** * ** *
20657904 GGGGGGACCTGGTTGATCCTCGGCTTGCGCATTCTACCTCT
130 GAAGGGACCGGGCCGATCCTCGACTTGCGCATTCTACCTCT
20657945 TTGATCGATT
Statistics
Matches: 141, Mismatches: 28, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
195 1 0.01
196 140 0.99
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (196 bp):
GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGG
AGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGACAGTAGGATCAACAGCACACAG
AAGGGACCGGGCCGATCCTCGACTTGCGCATTCTACCTCTCCGACCGGCCTCTTTGGCCGAGGAG
C
Found at i:20657960 original size:696 final size:697
Alignment explanation
Indices: 20656883--20658175 Score: 1804
Period size: 696 Copynumber: 1.9 Consensus size: 697
20656873 TCGGGTCAGC
* * *
20656883 GCCCGAACGCTCATTTCAAGGGTTGGTTTAGGCATACATAGTTTATTCCATGTCTAAGCATACGG
1 GCCCGAACGCTCATTTCAAGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
* *
20656948 AGTTCATTCCTAGTCTAAGATCGGACCTGACCAAGGGTTGCAACAGTAGGATCGGCAGCACACAG
66 AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAACAGTAGGATCGGCAGCACACAG
* * * * * * *
20657013 GGGGTACCGAGCTGATCCCTAGCTTGTGCATTTTGCCTCTCCGATCGACCTCTCCGACCGATGAA
131 AGGGTACCGAGCCGATCCCGAGCTTGTGCATTCTACCTCTCCGACCGACCTCTCCGACCGAGGAA
* * *
20657078 CGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATATG
196 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATG
* * *
20657143 GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTATGACAGTAGGATCGACAGCACGCA
261 GAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTACGACAGTAGGATCAACAGCACGCA
* * *
20657208 GGGGGGACCGTGCCAATCCCCGGCTTGCACATTCTGCCTCTCTGGTCGACTGAGCGCCTGCACGC
326 GGGGGGACCGTGCCAATCCCCGGCTTGCACATTCTACCTCTCTGATCGACTGAGCGCCCGCACGC
* *
20657273 CTGTTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
391 CTGTTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAAG
* * ** * * * **
20657338 GTTGTGGTAGCGGGATCGGCAGCACGTAGTGGGGGACCGGGCTAATCCTCGGCTTGTGCATTATG
456 GTTGTGGCAGCGGGATCGACAGCACACAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTATG
* * *
20657403 CC-TCTCTGGCCGGCTCAGCACCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGATTTCA
521 CCTTCTC-GGCCGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACGTAGGCATACGGAGTTCA
20657467 TTCCA-GTCTAAGATCAGACCAGACTGAGGGTTGCAGCAACAGGATCGACAGCACGCAGGGGGGA
585 TTCCATGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAACAGGATCGACAGCACGCAGGGGGGA
20657531 CCAGGTCAGTCCCCGACTTACGAATTCTACCTCTCCGGCCGGCTGAGT
650 CCAGGTCAGTCCCCGACTTACGAATTCTACCTCTCCGGCCGGCTGAGT
* * ** *
20657579 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
1 GCCCGAACGCTCATTTCAAGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
* * *
20657644 AGTTTATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGTAGGATCGGTAGCACACAG
66 AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAACAGTAGGATCGGCAGCACACAG
* * ** *
20657709 AAGGG-ACCGGGCCGATCCTCGA-CTTGTGCATTCTACCTCTCCGACCGGCCTCTTTGGCCGAGG
131 -AGGGTACCGAGCCGATCC-CGAGCTTGTGCATTCTACCTCTCCGACCGACCTCTCCGACCGAGG
* *
20657772 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATA
194 AACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
* * ** * **
20657837 TGGAGTTCATTCCTAATCTAAGTTTGGATCGGATCGAGGGTTGCGGTAGTAGGATCAACAGCACG
259 TGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTACGACAGTAGGATCAACAGCACG
*** * * * *
20657902 CAGGGGGGACC-TGGTTGATCCTCGGCTTGCGCATTCTACCTCTTTGATCGATTGAGCGCCCGCA
324 CAGGGGGGACCGT-GCCAATCCCCGGCTTGCACATTCTACCTCTCTGATCGACTGAGCGCCCGCA
* * * *
20657966 CGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGGCCA
388 CGCCTGTTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCA
* *
20658031 AAGGTTGTGGCAGCGGGATCGACAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTACGCATT
453 AAGGTTGTGGCAGCGGGATCGACAGCACACAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATT
* * * * ** * * *
20658096 CTGCCTTTTCGGTCGGCTGAGCACCCGTGCGCTCGTTTCGTGTGTTGGCGTAGGCATACGGAGTT
518 ATGCCTTCTCGGCCGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACGTAGGCATACGGAGTT
20658161 CATTCCATGTCTAAG
583 CATTCCATGTCTAAG
20658176 CCCCAACCGG
Statistics
Matches: 513, Mismatches: 79, Indels: 9
0.85 0.13 0.01
Matches are distributed among these distances:
695 1 0.00
696 497 0.97
697 15 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (697 bp):
GCCCGAACGCTCATTTCAAGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAACAGTAGGATCGGCAGCACACAG
AGGGTACCGAGCCGATCCCGAGCTTGTGCATTCTACCTCTCCGACCGACCTCTCCGACCGAGGAA
CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATG
GAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTACGACAGTAGGATCAACAGCACGCA
GGGGGGACCGTGCCAATCCCCGGCTTGCACATTCTACCTCTCTGATCGACTGAGCGCCCGCACGC
CTGTTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAAG
GTTGTGGCAGCGGGATCGACAGCACACAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTATG
CCTTCTCGGCCGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACGTAGGCATACGGAGTTCAT
TCCATGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAACAGGATCGACAGCACGCAGGGGGGAC
CAGGTCAGTCCCCGACTTACGAATTCTACCTCTCCGGCCGGCTGAGT
Found at i:20658143 original size:159 final size:159
Alignment explanation
Indices: 20657888--20658493 Score: 567
Period size: 159 Copynumber: 3.8 Consensus size: 159
20657878 TGCGGTAGTA
* * ** * * * *
20657888 GGATCAACAGCACGCAG-GGGGGACCT-GGTTGATCCTCGGCTTGCGCATTCTACCTCTTTGATC
1 GGATCGACAGCACACAGAGGGGGA-CTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTC
* * * * *
20657951 GATTGAGCGCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
65 GGTTGAGCACCCGTACGCTC-GTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
* * * *
20658015 AGCCCCAGTCGGGCCAAAGGTTGTGGCAGCG
129 AGCCCCAGCCGGACTAAGGGTTGTGGCAGCG
* *
20658046 GGATCGACAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTTTTCGGTCG
1 GGATCGACAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCG
* * * * * *
20658111 GCTGAGCACCCGTGCGCTCGTTTCGTGTGTTGGCGTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GTTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
* * * *
20658176 CCCCAACCGGTCTGAGGGTTGTGGCAACG
131 CCCCAGCCGGACTAAGGGTTGTGGCAGCG
* * * * * * * * * * *
20658205 TGACCGGCAACACGCAAAGGGGGACTGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCAGCCG
1 GGATCGACAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCG
* * * * * * *
20658270 GTTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCA-ATCTAA
66 GTTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAA
** * * **
20658334 G-ATCAGACCAGACTAAGGGTTATGGCAGTA
130 GCCCCAG-CCGGACTAAGGGTTGTGGCAGCG
* * ** * * *
20658364 GGATCAACAGCACACAG-GGGGGACTAGGCCGATCCTTGGTTTGCGCATTCTACCTCTCCGGTCG
1 GGATCGACAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCG
* * *
20658428 GTTGAGCACCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAATTCATTCCATGTCTAAG
66 GTTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
20658493 C
131 C
20658494 ATACGGAGTT
Statistics
Matches: 351, Mismatches: 90, Indels: 13
0.77 0.20 0.03
Matches are distributed among these distances:
157 3 0.01
158 106 0.30
159 238 0.68
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GGATCGACAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCG
GTTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
CCCCAGCCGGACTAAGGGTTGTGGCAGCG
Found at i:20658505 original size:26 final size:26
Alignment explanation
Indices: 20658466--20658518 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20658456 GTTGGCTTAG
20658466 GCATACGAAATTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
* *
20658492 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
20658518 G
1 G
20658519 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:20664690 original size:26 final size:26
Alignment explanation
Indices: 20664640--20664692 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20664630 GTTAGCTTAG
*
20664640 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20664666 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20664692 G
1 G
20664693 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20665415 original size:26 final size:26
Alignment explanation
Indices: 20665378--20665430 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20665368 GTTGACTTGG
20665378 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20665404 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
20665430 G
1 G
20665431 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20666600 original size:26 final size:26
Alignment explanation
Indices: 20666564--20666616 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20666554 GTTGGCTTAG
*
20666564 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTAT-TCTAA
20666590 GCATACAGAGTTCATTCCTATTCTAA
1 GCATACAGAGTTCATTCCTATTCTAA
20666616 G
1 G
20666617 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTATTCTAA
Found at i:20666790 original size:26 final size:26
Alignment explanation
Indices: 20666761--20666813 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20666751 GTTTACTTAG
*
20666761 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20666787 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20666813 G
1 G
20666814 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20666814 original size:197 final size:197
Alignment explanation
Indices: 20666456--20666984 Score: 670
Period size: 197 Copynumber: 2.7 Consensus size: 197
20666446 AAGGGTTACG
* * *
20666456 GTAGCAGGATCGACAGCACGCAG-GGGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTC
1 GTAGTAGGATCGACAGCACGCAGTGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTC
* * * * * * *
20666520 CAACTGGCTGAGTACTCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 CGACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * * * *
20666585 TCTAAGCATACAGAGTTCATTCCTATTCTAAGATCGGACCAGATCGAGGGTTGC-AGTAGCAGGA
131 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCGA-CAGCAAGA
20666649 CCA
195 CCA
* * * * * *
20666652 GTAGTAGGATTGATAGCATGCAGTGGGGGATCGGGCTGATCCCTAGCTTGTGCATTCTGCCTCTC
1 GTAGTAGGATCGACAGCACGCAGTGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTC
* * * * **
20666717 CGACCGGTTGAACGCCCGCACGGTCGTTTTATGGGTTTACTTAGGCATACGGAGTTCATTCCATG
66 CGACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* ** * *
20666782 TCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGGTCGAAGGTTGCGACAGGAAGAC
131 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCGACAGCAAGAC
20666847 CA
196 CA
* * *
20666849 GTAGTAGGATCGACAGCACGCAGAT--GGGATCGGGCCGATCCCTGGCTTGCACATTCTACCTCC
1 GTAGTAGGATCGACAGCACGCAG-TGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCT
*
20666912 CCGACCGGTTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
65 CCGACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
*
20666977 ATCTAAGC
130 GTCTAAGC
20666985 CCCAGCCAGA
Statistics
Matches: 280, Mismatches: 50, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
196 116 0.41
197 162 0.58
198 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (197 bp):
GTAGTAGGATCGACAGCACGCAGTGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTC
CGACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCGACAGCAAGAC
CA
Found at i:20667520 original size:26 final size:26
Alignment explanation
Indices: 20667484--20667536 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20667474 GTTAGCTTAG
20667484 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20667510 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20667536 G
1 G
20667537 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.