Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 105 of 125
Found at i:20668236 original size:25 final size:26
Alignment explanation
Indices: 20668208--20668259 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20668198 GTTGACTTAG
20668208 GCATACGGAGTTCATTC-CAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
20668233 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
20668259 G
1 G
20668260 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:20668733 original size:158 final size:157
Alignment explanation
Indices: 20668288--20668734 Score: 411
Period size: 159 Copynumber: 2.8 Consensus size: 157
20668278 TTGTGACAGC
* * * * *
20668288 AGGATCGACAGCACGCATGGGGGATCGGGCTGATCCTCGAG-TTGCACATTCTGCCTCTCCAACC
1 AGGATCGACAGCACGCATAGGGGATCGGGCAGATCC-CCAGCTTACGCATTCTGCCTCT-CAACC
* * * *
20668352 GGCTGAGCACCCGCACGCCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
64 AGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
20668417 GCCCTAGCAGGATCGAGGGTTGTGCTAGT
129 GACCTAGCAGAATCGAGGGTTGAGCTAGT
* * * * * * *
20668446 GGGACCGACAGCACGCATAGAGGGATCGGGCAGATCCCTAGCTTATGCATTATGCCTCTCCAGCA
1 AGGATCGACAGCACGCATAG-GGGATCGGGCAGATCCCCAGCTTACGCATTCTGCCTCTCAACCA
* * * * * * * * * *
20668511 GGCTCAACGCTCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-ATCTA
65 -GCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* *
20668575 ATATC-AGATCA-AATCGAGGGTTGAAGC-AGT
128 AGACCTAG--CAGAATCGAGGGTTG-AGCTAGT
* * * * *
20668605 AGGATCGACAGCATGCAGT-GGGGATCGGGCCGGTCCCCAGCTTACGCATTCTGCCTCTCTGATC
1 AGGATCGACAGCACGCA-TAGGGGATCGGGCAGATCCCCAGCTTACGCATTCTGCCTCTC-AACC
* * *
20668669 AACTGAGCACCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAA
64 AGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
20668734 G
129 G
20668735 CATACGGAGT
Statistics
Matches: 226, Mismatches: 53, Indels: 20
0.76 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 107 0.47
159 109 0.48
160 8 0.04
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (157 bp):
AGGATCGACAGCACGCATAGGGGATCGGGCAGATCCCCAGCTTACGCATTCTGCCTCTCAACCAG
CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
CCTAGCAGAATCGAGGGTTGAGCTAGT
Found at i:20668758 original size:26 final size:26
Alignment explanation
Indices: 20668708--20668760 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20668698 GTTGGCTTAG
* *
20668708 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20668734 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20668760 G
1 G
20668761 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20668933 original size:26 final size:26
Alignment explanation
Indices: 20668904--20668956 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20668894 GTTGACTTAG
20668904 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20668930 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20668956 G
1 G
20668957 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20668942 original size:196 final size:196
Alignment explanation
Indices: 20668599--20668960 Score: 476
Period size: 196 Copynumber: 1.8 Consensus size: 196
20668589 CGAGGGTTGA
* * * *
20668599 AGCAGTAGGATCGACAGCATGCAGTGGGGATCGGGCCGGTCCCCAGCTTACGCATTCTGCCTCTC
1 AGCAGCAGGATCGACAGCATGCAGTGGGGACCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTC
* * * **
20668664 TGATCAACTGAGCACCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATG
66 CGATCAACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATG
*
20668729 TCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGATTGAGAGTTGCGATAGCAGGAC
131 TCTAAGCATACGGAGTTCATCCCCAATCTAAGATCAAACCAGATTGAGAGTTGCGATAGCAGGAC
20668794 T
196 T
* * **
20668795 AGCAGCAGGATCGGCAGCATGCTAG-GGGGACCAGGTCGATCCCTGGCTTACGCATTCTGCCTCT
1 AGCAGCAGGATCGACAGCATGC-AGTGGGGACCAGGCCGATCCCCAGCTTACGCATTCTGCCTCT
*** ** * * *
20668859 CCGATCGGTTGAGGGCCCGCATGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
65 CCGATCAACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCA
* *
20668924 -GTCTAAGCATATGGAGTTCATCCCCAGTCTAAGATCA
129 TGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATCA
20668961 GATCGAACCA
Statistics
Matches: 140, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
196 136 0.97
197 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (196 bp):
AGCAGCAGGATCGACAGCATGCAGTGGGGACCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTC
CGATCAACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATG
TCTAAGCATACGGAGTTCATCCCCAATCTAAGATCAAACCAGATTGAGAGTTGCGATAGCAGGAC
T
Found at i:20669276 original size:26 final size:26
Alignment explanation
Indices: 20669247--20669299 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20669237 GTTGGCTTAG
20669247 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
20669273 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20669299 G
1 G
20669300 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20671229 original size:26 final size:26
Alignment explanation
Indices: 20671192--20671244 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
20671182 GGTTGGCTAG
20671192 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20671218 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
20671244 G
1 G
20671245 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20671391 original size:26 final size:26
Alignment explanation
Indices: 20671355--20671405 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20671345 TGACTTAGGG
*
20671355 ATATAGAGTTCATCCCCAGTGTAAGC
1 ATATAGAGTTCATCCCCAGTCTAAGC
* *
20671381 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATAGAGTTCATCCCCAGTCTAAG
20671406 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATATAGAGTTCATCCCCAGTCTAAGC
Found at i:20671877 original size:26 final size:26
Alignment explanation
Indices: 20671847--20671898 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20671837 GTTGGCTTAG
*
20671847 GCATATAGAATTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
*
20671873 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
20671899 AATTGGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:20672371 original size:158 final size:157
Alignment explanation
Indices: 20672160--20672731 Score: 558
Period size: 158 Copynumber: 3.6 Consensus size: 157
20672150 TCGGATCGAA
* * * * * *
20672160 CCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGTGCCCGCATGCCCGTTTCGTGGGTTGGC
1 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGC
* * * * *
20672225 TTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAGACAGACCAAGGGTTGCGACAGCAGGATC
66 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAGCAGGATC
*
20672290 GACAGCACGTAGAAGGGACTGAGCCGAT
131 GATAGCACGTAGAAGGGA-TGAGCCGAT
* * * *
20672318 CCCCGGCTTGCGCTTTCTGCCTCTCCGACTGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGC
1 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGC
* * * *
20672383 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACC
66 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAGCAGGATC
* * * *
20672448 GGTAACACTTAGAGTGGGATCG-GCCCGAT
131 GATAGCACGTAGA-AGGGAT-GAG-CCGAT
* * * * * * *
20672477 CCCCGGCTTGCGCATTATGCCTTTCCGGCC-AGCTCAGCGCCCGAATGCTCATTTCATGGGTTGA
1 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCGA-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
*** * *** * * *
20672541 CTTAGGCATATAAAGTTCATTCTCA-GTATAAG-ATTAGATTGGATCGAGGGTTGTGGCAGTAGG
65 CTTAGGCATAGGGAGTTCATTC-CATGTCTAAGCCCCAGA-CGGACCGAGGGTTGTGGCAGCAGG
* ** * * *
20672604 ATCGATAGCACGCAGGGGGGATCAGGCAAGT
128 ATCGATAGCACGTAGAAGGGATGAGCCGA-T
** * * * *
20672635 CCCTAGCTTGTGCATTCTGCCTCTCCGGCCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGC
1 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGC
*
20672700 TTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20672732 AAACGGAGTT
Statistics
Matches: 329, Mismatches: 74, Indels: 21
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.01
158 206 0.63
159 117 0.36
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
CCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGC
TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAGCAGGATC
GATAGCACGTAGAAGGGATGAGCCGAT
Found at i:20672935 original size:195 final size:196
Alignment explanation
Indices: 20672595--20672952 Score: 524
Period size: 195 Copynumber: 1.8 Consensus size: 196
20672585 CGAGGGTTGT
* *
20672595 GGCAGTAGGATCGATAGCACGCAGGGGGGATCAGGCAAGTCCCTAGCTTGTGCATTCTGCCTCTC
1 GGCAGTAGGATCGACAGCACGCAGGGGGGATCAGGCAAGTCCCGAGCTTGTGCATTCTGCCTCTC
* * *
20672660 CGGCCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 CGGACGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
20672725 TCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTTGGAC
131 TCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTTGGAC
20672790 C
196 C
* * * *
20672791 GGCAGTAGGATCTACAGCACGTAGGGGGGATCGAGTCGA-TCCCCGA-CTTGTGCATTCTGCCTC
1 GGCAGTAGGATCGACAGCACGCAGGGGGGATC-AGGCAAGT-CCCGAGCTTGTGCATTCTGCCTC
* * ** * * *
20672854 TCC-GACGGCTGAGCATCCGTGCGCTCGTTTCGTGTGTTGGCTTAGGTATACAGAGTTCATTTCA
64 TCCGGACGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA
*
20672918 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
129 TGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGA
20672953 GTTTGAGCCA
Statistics
Matches: 143, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
195 85 0.59
196 50 0.35
197 8 0.06
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (196 bp):
GGCAGTAGGATCGACAGCACGCAGGGGGGATCAGGCAAGTCCCGAGCTTGTGCATTCTGCCTCTC
CGGACGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
TCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTTGGAC
C
Found at i:20672948 original size:26 final size:26
Alignment explanation
Indices: 20672901--20672951 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20672891 TGGCTTAGGT
*
20672901 ATACAGAGTTCATTTCATGTCTAAGC
1 ATACAGAGTTCATTCCATGTCTAAGC
*
20672927 ATACGGAGTTCATTCCCA-GTCTAAG
1 ATACAGAGTTCATT-CCATGTCTAAG
20672952 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCATGTCTAAGC
Found at i:20674142 original size:26 final size:25
Alignment explanation
Indices: 20674112--20674163 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
20674102 GTTGGCTTAG
20674112 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACGGAGTTCATTCGA-GTCTAA
* *
20674138 GCATATGGAGTTCATTCTAGTCTAA
1 GCATACGGAGTTCATTCGAGTCTAA
20674163 G
1 G
20674164 ATGGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (25 bp):
GCATACGGAGTTCATTCGAGTCTAA
Found at i:20674672 original size:158 final size:158
Alignment explanation
Indices: 20674483--20674774 Score: 385
Period size: 158 Copynumber: 1.8 Consensus size: 158
20674473 CCCGCACGCT
*
20674483 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAG
1 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGCACCA-ACCAGACCGAG
* * * *
20674546 GGTTATGACAGT-AGGATCAGCAGCACGCAG-GGGGGATCGGGCTGATCCCCGACTTGCTCATTC
64 GGTTATGACAATGA-GACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCA-TC
20674609 TGCCTCTCTAGTCGGTTGATTGCCCGCACATC
127 TGCCTCTCTAGTCGGTTGATTGCCCGCACATC
* ** * **
20674641 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGATTGAGGG
1 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAACCAGACCGAGGG
* * * *
20674706 TTGTGGCAATGAGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATCTGCC
66 TTATGACAATGAGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATCTGCC
20674771 TCTC
131 TCTC
20674775 CGGTCGACTG
Statistics
Matches: 115, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
157 3 0.03
158 82 0.71
159 30 0.26
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAACCAGACCGAGGG
TTATGACAATGAGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATCTGCC
TCTCTAGTCGGTTGATTGCCCGCACATC
Found at i:20675577 original size:26 final size:26
Alignment explanation
Indices: 20675541--20675591 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20675531 GTTGACTTAG
20675541 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
20675567 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
20675592 TGATAGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20676076 original size:26 final size:26
Alignment explanation
Indices: 20676042--20676094 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20676032 GTTGGCTTAG
*
20676042 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20676068 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20676094 G
1 G
20676095 AACGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20676695 original size:26 final size:26
Alignment explanation
Indices: 20676666--20676718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20676656 GTTGACTTAG
*
20676666 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20676692 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20676718 G
1 G
20676719 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20677968 original size:26 final size:26
Alignment explanation
Indices: 20677925--20677977 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20677915 CTTGGCTTAG
*
20677925 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAATTCATTCCTA-GTCTAA
*
20677951 GCATACGGAATTCTTTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
20677977 G
1 G
20677978 ATCACATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:20681821 original size:21 final size:21
Alignment explanation
Indices: 20681795--20681847 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
20681785 ACTTTGTGAG
*
20681795 ATGGCATTGAGGCCATGCGCC
1 ATGGCATGGAGGCCATGCGCC
20681816 ATGGCATGGAGGCCATGCGCC
1 ATGGCATGGAGGCCATGCGCC
*
20681837 ACGG-ATGGAGG
1 ATGGCATGGAGG
20681848 AGCTTACCAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.21, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
ATGGCATGGAGGCCATGCGCC
Found at i:20685469 original size:26 final size:26
Alignment explanation
Indices: 20685440--20685492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20685430 GTTGACTTAG
*
20685440 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20685466 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20685492 G
1 G
20685493 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20686130 original size:26 final size:26
Alignment explanation
Indices: 20686101--20686153 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20686091 GTTGGCTTAG
* *
20686101 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
20686127 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20686153 G
1 G
20686154 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20686346 original size:26 final size:26
Alignment explanation
Indices: 20686310--20686362 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20686300 GTTGACTTAG
20686310 GCATAAGGAGTTCA-TCCCTAGTCTAA
1 GCATAAGGAGTTCATTCCCT-GTCTAA
*
20686336 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATAAGGAGTTCATTCCCTGTCTAA
20686362 G
1 G
20686363 TTCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCTGTCTAA
Found at i:20686529 original size:25 final size:26
Alignment explanation
Indices: 20686494--20686545 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20686484 GTTGACTTAG
20686494 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20686520 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20686545 G
1 G
20686546 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20686632 original size:183 final size:184
Alignment explanation
Indices: 20686280--20686704 Score: 500
Period size: 183 Copynumber: 2.3 Consensus size: 184
20686270 CGGTTGAGCA
*
20686280 CCTGCACACTCGTTTTGTGGGTTGACTTAGGCATAAGGAGTTCATCCCTAGTCTAAGCATACGGA
1 CCTGCACACTCGTTTTGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * ** * * *
20686345 GTTCATTCCCTGTCTAAGTTCGGACCGAACCGAGGGTTACGGCAGCAGGGTCGGTAGCACGTAAT
66 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACAACAGCAGGATCGATAGCACGTAAG
* * * * * *
20686410 AGGGATCGAGTCGATCCCTGGCTTACGCATTCTACCTCTCCGGTCGATTGAACG
131 AGGGACCGAGTCAATCCCTGACTTACGCATTCTACCTCTCCAGCCGACTGAACG
* * *
20686464 CCTGCACACTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA-GGA
1 CCTGCACACTCGTTTTGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTAAGCATACGGA
* *
20686528 GTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGA-AACAGCAGGATCGATAGCACGTAA
66 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTT-ACAACAGCAGGATCGATAGCACGTAA
* * ** *
20686592 GGGGGGCCGAG-CTAAT-CCTCGACTTGTGCATTCTACCTCTCCAGCCGACTGAGCG
130 GAGGGACCGAGTC-AATCCCT-GACTTACGCATTCTACCTCTCCAGCCGACTGAACG
* * * * * *
20686647 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
1 CCTGCACACTCGTTTTGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCA-GTCTAAGC
20686705 CCCAACCGGA
Statistics
Matches: 204, Mismatches: 33, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
182 7 0.03
183 139 0.68
184 58 0.28
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (184 bp):
CCTGCACACTCGTTTTGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACAACAGCAGGATCGATAGCACGTAAG
AGGGACCGAGTCAATCCCTGACTTACGCATTCTACCTCTCCAGCCGACTGAACG
Found at i:20686873 original size:26 final size:26
Alignment explanation
Indices: 20686836--20686888 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20686826 GTTGGCTTAG
20686836 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
20686862 GCATAC-AGAGTTTATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
20686888 G
1 G
20686889 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20687182 original size:197 final size:191
Alignment explanation
Indices: 20686924--20687580 Score: 546
Period size: 197 Copynumber: 3.3 Consensus size: 191
20686914 AGTAGGACCA
* * * ** * **
20686924 ATAGCAGGATCGAGAACACGCAGGGTGGACCAGGTTGATCCCCGACCTATGCATTCTGCCTCTCC
1 ATAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
* *
20686989 GGTTGGACTCTTCGGCCGGCTGAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATAGA
66 -G-TGGACTC-TC-GCCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGA
* *
20687054 GTTCATCCTTAGTCTAAGCATACGGAGTTCATTTGCAGTCTAAGATCAGACCGGATCGAGGGTGG
127 GTTCATCCCTAGTCTAAGCATACGGAGTTCATTT-CAGTCTAAGATCAGACCGGA-CGAGGGTTG
20687119 CG
190 CG
* *
20687121 ATAGTAGGATCGACAGCATGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
1 ATAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
* * *
20687186 ---GA------CCGACTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
66 GTGGACTCTCGCCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTC
* * ** * *
20687242 ATTCCGT-GTTTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAAAACAAGGGTTACG
131 A-TCCCTAGTCTAAGCATACGGAGTTCATT-TCAGTCTAAGATCAGACC-GGACGAGGGTTGCG
* * * * * * * *
20687305 GTAGCAGGACCAGTAACAAGATCGATAGCACGTAAGGGCGGACCGGGCTGATCCTCGACTTGTGT
1 ATAGCAGG---A-T--C--GA-C---AGCACG-CAGGGGGGACCAGGCCGATCCCCGACTTGCGC
* * * ***
20687370 ATTCTGCCTCTCCGACTGGCCTCTCTAGTCGGCTGAGCGTCCGTACGCTCATTTTAAGGGTTGAC
53 ATTCTGCCTCTCCG--TGGACTCTC--GCCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGAC
* * * *
20687435 TTAGGCATACAGAGTTCATCCCTAGTCTAAGTATATGGAGTTCATTCCCAGTCTAAGATCAGACT
114 TTAGGCATACAGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATT-TCAGTCTAAGATCAGACC
20687500 GGACTGAGGGTTGCAG
178 GGAC-GAGGGTTGC-G
* * * * *
20687516 CA-A-TAGGATTGGCAGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTC
1 -ATAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTC
20687579 CG
65 CG
20687581 ATCGGTTGAG
Statistics
Matches: 363, Mismatches: 64, Indels: 66
0.74 0.13 0.13
Matches are distributed among these distances:
184 102 0.28
185 6 0.02
187 1 0.00
188 1 0.00
190 1 0.00
192 4 0.01
193 1 0.00
196 5 0.01
197 130 0.36
198 6 0.02
201 1 0.00
202 2 0.01
206 1 0.00
207 1 0.00
209 6 0.02
210 93 0.26
211 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (191 bp):
ATAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
GTGGACTCTCGCCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTC
ATCCCTAGTCTAAGCATACGGAGTTCATTTCAGTCTAAGATCAGACCGGACGAGGGTTGCG
Found at i:20687281 original size:26 final size:26
Alignment explanation
Indices: 20687229--20687281 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20687219 GTTGGCTTAG
* *
20687229 GCATACGGAGTTCATTCCGTGTTTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
20687255 GCATACGGAGTTCATTCTC-AGTCTAA
1 GCATACGGAGTTCATTC-CGAGTCTAA
20687281 G
1 G
20687282 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCGAGTCTAA
Found at i:20687451 original size:394 final size:393
Alignment explanation
Indices: 20686777--20687649 Score: 1099
Period size: 394 Copynumber: 2.2 Consensus size: 393
20686767 CCCAGGCTTA
* * * *
20686777 CGCATTCTGCCTCTCCGGTCGACTGAACGGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * ** * *
20686842 GAAGTTCATTCCATGTCTAAGCATACAGAGTTTATTCCCAGTCTAAGATCAGATCGGATCGAGGG
66 GGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAAACAAGGG
** * * * * * *
20686907 TTGTGACAGTAGGACCAATAGCAGGATCGAGAACACGCAGGGTGGACCAGGTTGATCCCCGACCT
131 TTACGACAGCAGGACCAATAACAAGATCGAGAACACGAAGGGCGGACCAGGCTGATCCCCGACCT
** * **
20686972 ATGCATTCTGCCTCTCCGGTTGGACTCTTCGGCCGGCTGAGCACCCGTACGCTCATTTCGTGGGT
196 ATGCATTCTGCCTCTCCGACTGGACTCTTCAGCCGGCTGAGCACCCGTACGCTCATTTCAAGGGT
* * **
20687037 TGACTTAGGCATATAGAGTTCATCCTTAGTCTAAGCATACGGAGTTCATTTGCAGTCTAAGATCA
261 TGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
*
20687102 GACCGGA-TCGAGGGTGGC-G-ATAGTAGGATCGACAGCATGCAGGGGGGACCAGGCCGATCCCC
326 GACCGGACT-GAGGGTGGCAGCA-A-TAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCC
20687164 GACTTG
388 GACTTG
* *
20687170 CGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * *
20687235 GGAGTTCATTCCGTGTTTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAAAACAAGGG
66 GGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAAACAAGGG
** * * * * * *
20687300 TTACGGTAGCAGGACCAGTAACAAGATCGATAGCACGTAAGGGCGGACCGGGCTGATCCTCGACT
131 TTACGACAGCAGGACCAATAACAAGATCGAGAACACG-AAGGGCGGACCAGGCTGATCCCCGACC
* * * * ** *
20687365 TGTGTATTCTGCCTCTCCGACTGGCCTC-TCTAGTCGGCTGAGCGTCCGTACGCTCATTTTAAGG
195 TATGCATTCTGCCTCTCCGACTGGACTCTTC-AGCCGGCTGAGCACCCGTACGCTCATTTCAAGG
* *
20687429 GTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGTATATGGAGTTCATTCCCAGTCTAAGAT
259 GTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
20687494 CAGACTGGACTGAGGGTTGCAGCAATAGGATTGGCAGCACGCAGGGGGGACCAGGCCGATCCCTG
324 CAGACCGGACTGAGGGTGGCAGCAATAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCG
*
20687559 GCTTG
389 ACTTG
** * * *
20687564 CGCATTCTGCCTCTCCGATCGGTTGAGTGCCCGT-CGCCCGTTTCGTGGGTTGGCTTAGGCATAT
1 CGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
20687628 GGAGTTCATTCCATGTCTAAGC
66 GGAGTTCATTCCATGTCTAAGC
20687650 CCAGCTGGAC
Statistics
Matches: 408, Mismatches: 67, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
393 189 0.46
394 215 0.53
395 3 0.01
396 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (393 bp):
CGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAAACAAGGG
TTACGACAGCAGGACCAATAACAAGATCGAGAACACGAAGGGCGGACCAGGCTGATCCCCGACCT
ATGCATTCTGCCTCTCCGACTGGACTCTTCAGCCGGCTGAGCACCCGTACGCTCATTTCAAGGGT
TGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCGGACTGAGGGTGGCAGCAATAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGAC
TTG
Found at i:20688542 original size:26 final size:26
Alignment explanation
Indices: 20688503--20688555 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20688493 GTTGACTTAG
*
20688503 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20688529 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20688555 G
1 G
20688556 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20689231 original size:26 final size:26
Alignment explanation
Indices: 20689202--20689251 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20689192 GACTTAGGTG
20689202 TACGGAGTTCATCCCCAATCTAAGCA
1 TACGGAGTTCATCCCCAATCTAAGCA
* *
20689228 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
20689252 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCA
Found at i:20689518 original size:159 final size:159
Alignment explanation
Indices: 20689312--20689626 Score: 459
Period size: 159 Copynumber: 2.0 Consensus size: 159
20689302 GACCCGACTA
* *
20689312 ATCCCCGGCTTGCACATTCTGCCTCTCCAACCGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCACATTCTGCCTCTCCAACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
* * * *
20689377 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGTAGCGGGA
66 GCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAATCGAACCGAGGGTTGTGGCAACGGGA
**
20689442 CTGGCAGCATGCAGAGGGGGACCGGGTCG
131 CTGGCAGCACACAGAGGGGGACCGGGTCG
* * *** * *
20689471 ATCCCCGGCTTGCGCTTTCTGCCTCTTTGATCGACTGAGCGCTCGCACGCCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCACATTCTGCCTCTCCAACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
* *
20689536 GCTTATGCATAGGGAGTTCATTCCATGTCAAAGCCCCAATCGGACCGAGGGTTGTGGCAACGGGA
66 GCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAATCGAACCGAGGGTTGTGGCAACGGGA
* *
20689601 TTGGCAGCACACAGAGGGGGATCGGG
131 CTGGCAGCACACAGAGGGGGACCGGG
20689627 CCTCTTCGAT
Statistics
Matches: 137, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
159 137 1.00
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.23
Consensus pattern (159 bp):
ATCCCCGGCTTGCACATTCTGCCTCTCCAACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCCCCAATCGAACCGAGGGTTGTGGCAACGGGA
CTGGCAGCACACAGAGGGGGACCGGGTCG
Found at i:20690066 original size:26 final size:26
Alignment explanation
Indices: 20690035--20690084 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20690025 GACTTAGGCG
20690035 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
20690061 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
20690085 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:20690255 original size:184 final size:185
Alignment explanation
Indices: 20689928--20690268 Score: 499
Period size: 184 Copynumber: 1.8 Consensus size: 185
20689918 GACCAGTAGT
** **
20689928 AGGATTGGCAGCACGTAGGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC
1 AGGATTGGCAGCACACAGGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
* * *
20689993 GGCTAAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATCCCCAGTCTAA
66 GGCTAAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
*
20690058 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGAGACAGC
131 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGAGACAGC
* * *
20690113 AGGATTGGTAGCACACA-GGGGGGACC-GAGCTGATTCCTGGCTTGCGCATTCTGCCTCTCCGAC
1 AGGATTGGCAGCACACAGGGGGGGACCAG-GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
* * * * *
20690176 CGGCTGAGCCCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATATGGAGTTCAT-TCCATGTCT
65 CGGCTAAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
20690240 AAGCATACAGAGTTCATTCCCAGTCTAAG
129 AAGCATACAGAGTTCATTCCCAGTCTAAG
20690269 GGTTTGAGCC
Statistics
Matches: 138, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
183 4 0.03
184 120 0.87
185 14 0.10
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (185 bp):
AGGATTGGCAGCACACAGGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
GGCTAAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGAGACAGC
Found at i:20690968 original size:26 final size:26
Alignment explanation
Indices: 20690938--20690988 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20690928 GTTGACTTAG
* *
20690938 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
20690964 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
20690989 TGATCAGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20691311 original size:26 final size:26
Alignment explanation
Indices: 20691288--20691344 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
20691278 TAGGCATAAG
20691288 GAGTTCATTCCATGTCTAAGCATACA
1 GAGTTCATTCCATGTCTAAGCATACA
20691314 GAGTTCATTCCATGTCTAAGCATACA
1 GAGTTCATTCCATGTCTAAGCATACA
20691340 GAGTT
1 GAGTT
20691345 TGAGCCACAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (26 bp):
GAGTTCATTCCATGTCTAAGCATACA
Found at i:20692117 original size:135 final size:134
Alignment explanation
Indices: 20691876--20692146 Score: 337
Period size: 135 Copynumber: 2.0 Consensus size: 134
20691866 AGGGTTGCGA
* * * * *
20691876 CAGTAGGATCAACAGCATGCAGGGGGGACCGGGTCGATCCCCAGCTTGCACATTTTGCCTCTCCG
1 CAGTAGGATCAACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCACATTCTGCCTCTCCA
* * * *
20691941 ACCGGCTGAGCGCCCGAACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCA-GT
66 ACCGACTGAGCGCCCGAACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGT
20692005 CTAAG
130 CTAAG
* * * * * **
20692010 CAGTAGGATCGACAGCACGTAGGGGTGGATCGAGCCGGTCCCTAGCTTGCGTATTCTGCCTCTCC
1 CAGTAGGATCAACAGCACGCAGGGG-GGACCGAGCCGATCCCCAGCTTGCACATTCTGCCTCTCC
* * * *
20692075 AATCGATTGAGCGCCCGTACACTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
65 AACCGACTGAGCGCCCGAACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGT
20692140 CTAAG
130 CTAAG
20692145 CA
1 CA
20692147 TACAGGGTTC
Statistics
Matches: 115, Mismatches: 20, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
134 25 0.22
135 90 0.78
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (134 bp):
CAGTAGGATCAACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCACATTCTGCCTCTCCA
ACCGACTGAGCGCCCGAACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTC
TAAG
Found at i:20692168 original size:26 final size:26
Alignment explanation
Indices: 20692118--20692170 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20692108 GTTGGCTTAG
*
20692118 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20692144 GCATACAGG-GTTCATTCC-TAATCTAA
1 GCATAC-GGAGTTCATTCCAT-ATCTAA
20692170 G
1 G
20692171 ATCGGGTCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.88
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20692357 original size:26 final size:26
Alignment explanation
Indices: 20692327--20692379 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20692317 GTTGACTTAG
* *
20692327 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
20692353 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
20692379 G
1 G
20692380 AATGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:20692856 original size:26 final size:26
Alignment explanation
Indices: 20692827--20692879 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20692817 GTTGACTTAG
20692827 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20692853 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20692879 G
1 G
20692880 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20692986 original size:184 final size:184
Alignment explanation
Indices: 20692677--20693025 Score: 414
Period size: 184 Copynumber: 1.9 Consensus size: 184
20692667 AGGCATACGA
* * * * *
20692677 AGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACAGTAGCAGGATTGGCAGCACGCAA
1 AGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTACAGCAGCAGGATCGACAGCACGCAA
* * * * * * * * * * * * *
20692742 GGGGGATCGAGCCGATCCCTGGTTTGCGCATTATGCCTTTTCGGCCTGTTGAGTGCCCGTACGCT
66 GGGGGACCGAGCCGATCCCCGGCTTACACATTACGCCTCTCCGGCCGGCTGAGCGCCCGTACACC
* *
20692807 CGTTTCGTGGGTTGAC-TTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGG
131 CATTTCATGGGTT-ACGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGG
* *
20692861 AGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGC-GACAGCAGGATCGACAGCACGTA
1 AGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTACAG-CAGCAGGATCGACAGCACGCA
* * * * *
20692925 GGGGGGACCGGGCCGATCCCCGGCTTACACATTCCGCGTCTCCGGTCGGCTGAGCGCCCGTACAC
65 AGGGGGACCGAGCCGATCCCCGGCTTACACATTACGCCTCTCCGGCCGGCTGAGCGCCCGTACAC
*
20692990 CCATTTCATGGGTTACGTTAGGCATAGGGAGTTCAT
130 CCATTTCATGGGTTACGTTAGGCATACGGAGTTCAT
20693026 TCCATGTCAA
Statistics
Matches: 135, Mismatches: 28, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
183 3 0.02
184 132 0.98
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTACAGCAGCAGGATCGACAGCACGCAA
GGGGGACCGAGCCGATCCCCGGCTTACACATTACGCCTCTCCGGCCGGCTGAGCGCCCGTACACC
CATTTCATGGGTTACGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGG
Found at i:20693164 original size:26 final size:26
Alignment explanation
Indices: 20693135--20693187 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20693125 GTTGGCTTAG
*
20693135 GCATACGAATTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20693161 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20693187 G
1 G
20693188 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20693888 original size:26 final size:26
Alignment explanation
Indices: 20693858--20693910 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20693848 GTTGACTTAG
*
20693858 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20693884 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20693910 G
1 G
20693911 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20694581 original size:26 final size:26
Alignment explanation
Indices: 20694551--20694603 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20694541 ATTGACTTAG
*
20694551 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
20694577 GCATATAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
20694603 G
1 G
20694604 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:20695083 original size:26 final size:25
Alignment explanation
Indices: 20695053--20695104 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
20695043 GTTGACTTAG
20695053 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCAT-CCCAGTCTAA
* * *
20695079 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATCCCAGTCTAA
20695104 G
1 G
20695105 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAGTCTAA
Found at i:20695582 original size:26 final size:26
Alignment explanation
Indices: 20695553--20695606 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
20695543 GTTGGCTTAG
20695553 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
20695579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
20695605 GC
1 GC
20695607 CGGTCGGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:20696031 original size:157 final size:157
Alignment explanation
Indices: 20695613--20696043 Score: 385
Period size: 158 Copynumber: 2.7 Consensus size: 157
20695603 AAGCCGGTCG
* * * * *
20695613 GAGAGGCAGAATGTGTAAG-TGGGGATTAGCCCGGT-GCTCCCTGCGTGCTGCCAATCCTGCTGC
1 GAGAGGCAGAACGTGCAAGCTGGGGATCAG-CCGGTCCCT-CCTGCGTGCTGTCAATCCTGCTGC
* * * * * *
20695676 CGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAATTTTGTATGCCTAAGTCAACCCACG
64 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAACCCACG
* * *
20695741 AAACGAGCGTTCGGGCATTTAGTCACCCA
129 AAACGAGCGTTCGGGCACTCAGCCACCCA
* * ** * * * * *
20695770 GAGAGGTAAATAC--GCAAGCCAGGGATCGGCTCAGTCCCCCTCTGCGTGCT-TCCAGTCCCGCT
1 GAGAGGCAGA-ACGTGCAAGCTGGGGATCAGC-CGGTCCCTC-CTGCGTGCTGT-CAATCCTGCT
* * ** * *
20695832 GCCACAACCCTCGGTTTGG-CCGGGGCTTAGACAT-GGAATGAACTCCGTATGCTTATGCCAACC
62 GCCGCAACCCTCGGTCTGGTCC-GATCTTAGAC-TGGGAATGAACTCTGTATGCTTAAGCCAACC
* * *
20695895 CACGAAACGGGC-TTGTGGGCGCTCAGCCGA-CCA
125 CACGAAACGAGCGTT-CGGGCACTCAGCC-ACCCA
* * *
20695928 GAGAGGCAGAACGTGCAAGCTGGGGATCAGCCGGTCCCTCCTACGTGCTGTCGATCCTACTGCCG
1 GAGAGGCAGAACGTGCAAGCTGGGGATCAGCCGGTCCCTCCTGCGTGCTGTCAATCCTGCTGCCG
*
20695993 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTA
66 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTA
20696044 GACTGGGGAT
Statistics
Matches: 209, Mismatches: 50, Indels: 30
0.72 0.17 0.10
Matches are distributed among these distances:
156 6 0.03
157 83 0.40
158 104 0.50
159 16 0.08
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (157 bp):
GAGAGGCAGAACGTGCAAGCTGGGGATCAGCCGGTCCCTCCTGCGTGCTGTCAATCCTGCTGCCG
CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAACCCACGAA
ACGAGCGTTCGGGCACTCAGCCACCCA
Found at i:20696043 original size:26 final size:26
Alignment explanation
Indices: 20696014--20696069 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
20696004 CTGGTCTGAT
20696014 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
20696040 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20696066 CTTA
1 CTTA
20696070 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20696480 original size:159 final size:159
Alignment explanation
Indices: 20696191--20696809 Score: 558
Period size: 159 Copynumber: 3.8 Consensus size: 159
20696181 TCGCTGTCGT
* * * * *
20696191 AACCCTCGGTCCGATCTGATCTTAGACTGGTAATCAACCCCGTATGCCTAAGCCAACCCACGACA
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCCACAAAA
* ** * * * * *
20696256 CGAGCGTACGGGCGCTCAGTAGGTCGGAGAGGCAGAATGTGCAAGCCGGGGACCAGCCCGGTCCC
66 CGAGCGTTCGAACACTCAGTCGGTCGGAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGGTCCC
20696321 CTCTTGTGTACTGTTGATCCTGCTATCAC
131 CTCTTGTGTACTGTTGATCCTGCTATCAC
* ** ** **
20696350 AACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTACGTATGCCTAAGTTAACCCACAAAA
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCCACAAAA
** * * ** *
20696415 CGAGCGTTCGGGCACTGAGTCGG-CTGGAGAGGCATAATGCGCAAGCCGAGGATTGGCTCGGTCC
66 CGAGCGTTCGAACACTCAGTCGGTC-GGAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGGTCC
* *
20696479 CCTCTTACGTGCTACCGATCCTACTGCTAGTCCTGCTATCTC
130 CCTCTT--GTG-TA-C--T-GT--TG--A-TCCTGCTATCAC
* *
20696521 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACCCCGCATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCCACAAAA
* * ** * * * * * *
20696586 CGAGTGTGCGAATGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGTCGGGGCCCTGCCCGAT-CC
66 CGAGCGTTCGAACACTCAGTCGGTCGGAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGGTCCC
* ** * *
20696650 CTCCTACGTGCTGTTGATCCTGCTATCGC
131 CTCTTGTGTACTGTTGATCCTGCTATCAC
* *** * ** *
20696679 AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAATTGCATATGCCTAAGTTAACCCATAAAA
1 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCCACAAAA
** * * * * *
20696744 TAAGCGTTCGAACACTGAGTCGATCGGAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCC
66 CGAGCGTTCGAACACTCAGTCGGTCGGAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGGTCCC
20696809 C
131 C
20696810 CTCTACGTGC
Statistics
Matches: 365, Mismatches: 80, Indels: 30
0.77 0.17 0.06
Matches are distributed among these distances:
158 114 0.31
159 116 0.32
161 5 0.01
162 2 0.01
163 2 0.01
164 1 0.00
165 1 0.00
166 2 0.01
167 1 0.00
168 3 0.01
170 7 0.02
171 110 0.30
172 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCCACAAAA
CGAGCGTTCGAACACTCAGTCGGTCGGAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGGTCCC
CTCTTGTGTACTGTTGATCCTGCTATCAC
Found at i:20696776 original size:329 final size:330
Alignment explanation
Indices: 20696040--20696823 Score: 862
Period size: 330 Copynumber: 2.4 Consensus size: 330
20696030 ACTCTGTATG
* * * * ** ** * *
20696040 CTTAGACTGGGGATGAACT-CTGTATGCTTAAGTCAACCCACAAAATGAGCGTGT-GGCCGCTCA
1 CTTAGACTGGGAATGAACTAC-ATATGCCTAAGTTAACCCACAAAACAAGCGT-TCGAACACTGA
* * * * * ** * * * * * *
20696103 GTCGGTTGGAGAGGTAGAATGCACAAGACGAGGATTAGCCTGATCCCCCCCTGCATGCTATCGAT
64 GTCGGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACCGAT
* * * * *
20696168 CCTACTACTGGT-CTCGCTGTCGT-AACCCTCGGTCCGATCTGATCTTAGACTGGTAATCAACCC
129 CCTACTGCTAGTCCT-GCTATC-TCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATCAACCC
* * ** * * *
20696231 CGTATGCCTAAGCCAACCCACGACACGAGCGTACGGGCGCTCAGTAGGTCGGAGAGGCAGAATGT
192 CGCATGCCTAAGCCAACCCACGAAACGAGCGTACGAACGCTCAGCAGGTCGGAGAGGCAAAATGC
* * ** *
20696296 GCAAGCCGGGGACCAGCCCGGTCCCCTCTTGTGTACTGTTGATCCTGCTATCACAACCCTCGGTC
257 GCAAGCCGGGGACCAGCCCGATCCCCTCCTACGTACTGTTGATCCTGCTATCACAACCCTCGATC
* *
20696361 CGGTCTAAT
322 CGATCCAAT
* * **
20696370 CTTAGACTGGGAATGAACTACGTATGCCTAAGTTAACCCACAAAACGAGCGTTCGGGCACTGAGT
1 CTTAGACTGGGAATGAACTACATATGCCTAAGTTAACCCACAAAACAAGCGTTCGAACACTGAGT
* *
20696435 CGGCTGGAGAGGCATAATGCGCAAGCCGAGGATTGGCTCGGT-CCCCTCTTACGTGCTACCGATC
66 CGGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTC-TACGTGCTACCGATC
*
20696499 CTACTGCTAGTCCTGCTATCTCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACCCCGC
130 CTACTGCTAGTCCTGCTATCTCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATCAACCCCGC
* * * *
20696564 ATGCCTAAGCCAACCCACGAAACGAGTGTGCGAATGCTCAGCCGGTCGGAGAGGCAAAATGCGCA
195 ATGCCTAAGCCAACCCACGAAACGAGCGTACGAACGCTCAGCAGGTCGGAGAGGCAAAATGCGCA
* * * * *
20696629 AGTCGGGGCCCTGCCCGAT-CCCTCCTACGTGCTGTTGATCCTGCTATCGCAACCCTCGATCCGA
260 AGCCGGGGACCAGCCCGATCCCCTCCTACGTACTGTTGATCCTGCTATCACAACCCTCGATCCGA
*
20696693 TCCGAT
325 TCCAAT
* * * *
20696699 CTTAGACTGGGAATGAATTGCATATGCCTAAGTTAACCCATAAAATAAGCGTTCGAACACTGAGT
1 CTTAGACTGGGAATGAACTACATATGCCTAAGTTAACCCACAAAACAAGCGTTCGAACACTGAGT
* * * *
20696764 C-GATCGGAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCTACGTGCTACC
66 CGGCT-GGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACC
20696824 CGTCTCGCTA
Statistics
Matches: 383, Mismatches: 64, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
328 2 0.01
329 150 0.39
330 228 0.60
331 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (330 bp):
CTTAGACTGGGAATGAACTACATATGCCTAAGTTAACCCACAAAACAAGCGTTCGAACACTGAGT
CGGCTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACCGATCC
TACTGCTAGTCCTGCTATCTCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATCAACCCCGCA
TGCCTAAGCCAACCCACGAAACGAGCGTACGAACGCTCAGCAGGTCGGAGAGGCAAAATGCGCAA
GCCGGGGACCAGCCCGATCCCCTCCTACGTACTGTTGATCCTGCTATCACAACCCTCGATCCGAT
CCAAT
Found at i:20697227 original size:26 final size:26
Alignment explanation
Indices: 20697198--20697248 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20697188 TCGATCCGAT
*
20697198 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20697224 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
20697249 TCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20697627 original size:158 final size:157
Alignment explanation
Indices: 20697223--20697685 Score: 389
Period size: 158 Copynumber: 2.9 Consensus size: 157
20697213 AACTTCGTAT
* * * * *
20697223 GCTTAGACATGGAATGAACTCCGTATTCCTAAGCCAACCAAGGAAACGATCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA-CGTGCGGGTGCTCAG
* * * *
20697288 CCGACCGGAGAGGCAGAATGCGCAA-CCGGGGATCAGCCCAGTCCCCCTTGCATGCTGTCAATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCTTACATGCTGCCAATCC
* ** *
20697352 TGCTGCTGCAACCCTCGGTCCAGTCTGA
130 CGCTGCCACAACCCTCGGTCCAGACTGA
* * ** * * *
20697380 TCTTAGA-ATGGGAATGAACTCTGC-ATGCCTAATTCAACCCATGAAATGAACGTTCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTC-CCTATGCCTAAGCCAACCCATGAAACG-ACGTGCGGGTGCTC
* * * * * * * ** * * * **
20697443 AACAGGCAGTAAAGGCATAATACGCAAGTTGAGGATCGGCCC-GTCTCTCTCTACATGCTGCCGG
63 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCT-TACATGCTGCCAA
* * *
20697507 TCCCGTTGCCACAACCCTCGGT-CTGACTGGG
127 TCCCGCTGCCACAACCCTCGGTCCAGACT-GA
20697538 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GACGTGCGGGTGCTCAG
* * * * * * * *
20697603 CCGGCCGGAGAGGGAGCATGCGCAAGCCAAGGATCA-CCCCGATCCCCCCTGCGTGCTGCCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCAG-TCCCCCTTACATGCTGCCAATC
* *
20697667 CTGCTACCACAACCCTCGG
129 CCGCTGCCACAACCCTCGG
20697686 CTCGATCCAA
Statistics
Matches: 229, Mismatches: 66, Indels: 21
0.72 0.21 0.07
Matches are distributed among these distances:
156 2 0.01
157 78 0.34
158 142 0.62
159 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGACGTGCGGGTGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCTTACATGCTGCCAATCCC
GCTGCCACAACCCTCGGTCCAGACTGA
Found at i:20699035 original size:158 final size:157
Alignment explanation
Indices: 20698463--20699014 Score: 484
Period size: 158 Copynumber: 3.5 Consensus size: 157
20698453 CTGATGTGCA
* *
20698463 CAACCCTCGGTCCGATCCGATCTTAGAATGGGAATGAAAC-CCGTATGCCTAAACCAACCCACGA
1 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGCCAACCCACGA
* * * * * ** *
20698527 AAGGAGCGTGCGGGCATTCAGTCGGCCGGAGAGGCAGAATACGCAAGCTGGGGACCGACTTGGTC
65 AACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATC-ACCCGATC
* *
20698592 CCCCCTGCAT-CTTGTTGATCCTGCTGCCG
129 CCCCCTGCGTGC-TGTCGATCCTGCTGCCG
* * * * *
20698621 CAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTGCATATGCCTAAGTCAACCCACGAA
1 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * * * * *
20698686 ACAAGCGTTCGGGCACTGAG-CAAGCTGGAGAGGCATAATGCGCAAGC-CGAGATCAATCCGATC
66 ACGAGCGTGCGGGCACTCAGTCGA-CCGGAGAGGCAGAATGCGCAAGCTGGGGATC-ACCCGATC
* * * * * * *
20698749 CCCTTCTGTGTGTTGCCAATCCCGCTGCCA
129 CCC-CCTGCGTGCTGTCGATCCTGCTGCCG
* * ** ** * * *
20698779 CAACCTTCGGTCCAATTGGGGCTTAGACAT-GGAATCAACTCCCTATGCCTAAGCCAACCCATGA
1 CAACCCTCGGTCCGATCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * ** * *
20698843 AACGGGCGTGTGGGCGGTCAGTCGGCCGGAGAGGCAGAATGTGCAAGCTGGGGATCACCCCGATC
65 AACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCA-CCCGATC
* * *
20698908 CCCCCTGCGTGCTGTCGATGCTGCTACTG
129 CCCCCTGCGTGCTGTCGATCCTGCTGCCG
* * * * * *
20698937 CAACCCTTGGTCCGGTCCGATCTTAGACTGGGGATGACCTCCGTATGGCTAAGTCAACCCACGAA
1 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
20699002 ACGAGCGTGCGGG
66 ACGAGCGTGCGGG
20699015 TGCTCAGCCG
Statistics
Matches: 297, Mismatches: 88, Indels: 18
0.74 0.22 0.04
Matches are distributed among these distances:
157 16 0.05
158 265 0.89
159 16 0.05
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCACCCGATCCC
CCCTGCGTGCTGTCGATCCTGCTGCCG
Found at i:20699803 original size:158 final size:158
Alignment explanation
Indices: 20699150--20699803 Score: 543
Period size: 159 Copynumber: 4.1 Consensus size: 158
20699140 AACTCCGCAT
* * * * * *
20699150 GCTTAGACATGGAGTTAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
* * * * * * * * *
20699215 TCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACATGCTGTCGGTC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGATC
* *
20699280 CCACTGCCACAACCCTCAGTCCGA-CTAGG
130 CCGCTGCCACAACCCTCAGT-CGATCTAGA
** ** *
20699309 GCTTAGACATGGAATGAACTCCCTATGCC-AAGCCAACCCACGAAATGGGCGTATGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
* * * * * * *
20699373 CCGGCTGAAGAGGCAGAATGCGTAAGCCAGGGATTGGCCTGGT-CCCTCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
* * * * * *
20699437 TGCTGTCGCAACCCTCGGTCTGGT-TTGA
131 CGCTGCCACAACCCTCAGTC-GATCTAGA
* ** * *** * * * * *
20699465 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCTGTGAAA-TGAGCGTTCAGGCACTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCGCTC
*** * * * *
20699528 AACCGATAGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCACCCTCTGCGTGCTGCCGA
64 AACCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTC-CCCCCTGCGTGCTGCCGA
* * * *
20699593 TCCCGCTGCCACAACCCTCGGTTCG-GCTGGG
128 TCCCGCTGCCACAACCCTCAG-TCGATCTAGA
*
20699624 GCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
* ** * *
20699689 CCGGCCGGAGAGGCAGAATACGCAAGCTGGGGATTGGCCTGGTCCCCCCTGCGTGCTGCCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
* * *
20699754 GGCTGCCGCAACCCTCAGATCGATC-CGA
131 CGCTGCCACAACCCTCAG-TCGATCTAGA
* *
20699782 TCTCAGAC-TGGGAATGAACTCC
1 GCTTAGACAT-GGAATGAACTCC
20699804 GTAGGCTTAG
Statistics
Matches: 387, Mismatches: 95, Indels: 27
0.76 0.19 0.05
Matches are distributed among these distances:
155 2 0.01
156 56 0.14
157 59 0.15
158 118 0.30
159 148 0.38
160 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
CGCTGCCACAACCCTCAGTCGATCTAGA
Found at i:20700543 original size:26 final size:26
Alignment explanation
Indices: 20700505--20700557 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20700495 GGCTCAAACT
* *
20700505 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCATATG
20700531 CTTAGACAT-GGAATGAACACCATATG
1 CTTAGAC-TGGGAATGAACACCATATG
20700557 C
1 C
20700558 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:20701095 original size:26 final size:26
Alignment explanation
Indices: 20701057--20701109 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20701047 CCGGTCCAAT
20701057 CTTAGACTAGGAATAAACTTCATATG
1 CTTAGACTAGGAATAAACTTCATATG
* *
20701083 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATAAACTTCATATG
20701109 C
1 C
20701110 CTGAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTTCATATG
Found at i:20702343 original size:26 final size:26
Alignment explanation
Indices: 20702307--20702359 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20702297 CTGGTCTGAT
*
20702307 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20702333 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20702359 C
1 C
20702360 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20702552 original size:26 final size:26
Alignment explanation
Indices: 20702516--20702568 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20702506 CCGATCCGAT
*
20702516 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
20702542 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
20702568 C
1 C
20702569 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:20705154 original size:26 final size:26
Alignment explanation
Indices: 20705125--20705177 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20705115 CTGGTTTGAT
*
20705125 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
*
20705151 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
20705177 C
1 C
20705178 CTAAGCCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:20706708 original size:26 final size:26
Alignment explanation
Indices: 20706679--20706731 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20706669 CCGGTCCAAT
20706679 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
20706705 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
20706731 C
1 C
20706732 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:20707223 original size:26 final size:26
Alignment explanation
Indices: 20707181--20707230 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20707171 TGGTCCGATC
*
20707181 TTAGACTGGGAAAGAACTTCGTATAA
1 TTAGACTGGGAAAGAACTCCGTATAA
* *
20707207 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTGGGAAAGAACTCCGTAT
20707231 GCCTATGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCGTATAA
Found at i:20707414 original size:26 final size:26
Alignment explanation
Indices: 20707377--20707428 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20707367 CGATTTGATT
*
20707377 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
20707403 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
20707429 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20707643 original size:698 final size:697
Alignment explanation
Indices: 20706680--20707967 Score: 1592
Period size: 698 Copynumber: 1.8 Consensus size: 697
20706670 CGGTCCAATC
*
20706680 TTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCA
1 TTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
** * * *
20706745 CGAAACGAACGTGCGGGTGCTCAGTCCGTCGGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCG
66 CGAAACGAACGTGCAAGTGCTCAGACCGCCGGAGAGGCAGAATGCACAAGCAGGGGATCGACCCG
* * *
20706810 ATCCCCCCTACGGGCTATCAATCCTACAGCCGCAACCCTCGGTTCAGTCTGATCTTAGACTAGGA
131 ATCCCCCCTACGGGCTATCAATCCTACAGCCGCAACCCTCAGTCCAGTCTGATCCTAGACTAGGA
* * * ** *
20706875 ATGAACTCCGTATGCCGACATCAACCCACGAGACGAGTGTGCGGGCAATGAGCCGACCGAAGATG
196 ATGAACTCCGTATGCCGACACCAAACCACGAAACGAGCATGCGGGCAATGAGCCGACCGAAGAGG
* * * **
20706940 CATAATGCGCAAGCCAGGGATTAG-CTCGGTCCCCCTT-TGTGTGCTACC-GATCTTACTACCAC
261 CATAATGCACAAACCAGGGA-TAGACCCGGT-CCCCTTCTGTGTGCTACCAG-TCCCACTACCAC
* **
20707002 AACCCTCGGTCCGGCTGGGGCTTAGATATGGAATGAACTCCCTATGGCTAAGCCAACCCATGAAA
323 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAA
* * * * * *
20707067 CGGGCGTGCGGGTGCTTAGTC-GATC-AGAGAGGCAGAATGCGCAAGTCGGGGATCGATACGGTC
388 CGGGCGTACGGGGGCTCAATCAG-TCGAGA-AGGCAGAATGCGCAAGTCAGGGATCGAGACGGT-
* * ***
20707130 CCCCCTT-CATGCTGCCGATCCTACT-GTCGTAAC-CTTCGTTCTGGTCCGATCTTAGACTGGGA
450 CCCCCTTGCATGCTACCGATCCTACTGGT-GCAACTC-TCGTTCCAATCCGATCTTAGACTGGGA
* * *
20707192 AAGAACTTCGTATAATTAGACTGGGGATGAACTCCGTATGCCTATGTTAACCCACGAAACGAGCA
513 AAGAACTTCGTATAATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCA
* *
20707257 TGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCATAAGCCGAGGATCGGCCCGATTCCTCCTAC
578 TACGGACGCTCAGCTGGCCGGAGAGGCAGAATGCATAAGCCGAGGATCGGCCCGATTCCTCCTAC
20707322 GTTCTGCCGATCCTGCTGCTGGTCTTACTACCGCAACCCTCGGTCCGATTTGATT
643 GTTCTGCCGATCCTGCTGCTGGTCTTACTACCGCAACCCTCGGTCCGATTTGATT
**
20707377 TTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCC
1 TTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCC
* * * *
20707442 ACGAAATGAATGTGCAAGTGCTCA-ACCGACCGGAGAGGCAGAATGCATAAGCTGGGGATC-AGC
65 ACGAAACGAACGTGCAAGTGCTCAGACCG-CCGGAGAGGCAGAATGCACAAGCAGGGGATCGA-C
* * * * * * * * *
20707505 CTGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGTAACCCTCAGTCC-GATCTGATCCTAGACT
128 CCGATCCCCCCTACGGGCTATCAATCCTACAGCCGCAACCCTCAGTCCAG-TCTGATCCTAGACT
* * * * * * * ** *
20707569 GGGAATGAACTTCGTATGCCTA-AGCCAAACCACGAAATGAGCATTCGGGCACTGAGTCGGTCGG
192 AGGAATGAACTCCGTATGCCGACA-CCAAACCACGAAACGAGCATGCGGGCAATGAGCCGACCGA
* * * *
20707633 AGAGGCATAATGCACAAACCGGGGATCGACCCGGTCCCTTTCTGTGTGCTACCAGTCCCACTGCC
256 AGAGGCATAATGCACAAACCAGGGATAGACCCGGTCCCCTTCTGTGTGCTACCAGTCCCACTACC
* ** *
20707698 ATAATGCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGA
321 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGA
* * *
20707763 AACGGGCGTACGGGGGCTCAATCAGTCGGGAAGGCAGAATGCGTAAGTCAGGGATCGAGCCGGTC
386 AACGGGCGTACGGGGGCTCAATCAGTCGAGAAGGCAGAATGCGCAAGTCAGGGATCGAGACGGTC
* * * * * * *
20707828 CCCTTTGCGTGCTATCGATCCTGCTGGTGCAAGTCTCGTTCCAATTCGATCTTAGACTGGGAATG
451 CCCCTTGCATGCTACCGATCCTACTGGTGCAACTCTCGTTCCAATCCGATCTTAGACTGGGAAAG
* * * * *
20707893 AAGTTTGTATACTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTAC
516 AACTTCGTATAATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATAC
20707958 GGACGCTCAG
581 GGACGCTCAG
20707968 TCGATCAGTG
Statistics
Matches: 491, Mismatches: 87, Indels: 25
0.81 0.14 0.04
Matches are distributed among these distances:
697 78 0.16
698 406 0.83
699 7 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (697 bp):
TTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACGAACGTGCAAGTGCTCAGACCGCCGGAGAGGCAGAATGCACAAGCAGGGGATCGACCCG
ATCCCCCCTACGGGCTATCAATCCTACAGCCGCAACCCTCAGTCCAGTCTGATCCTAGACTAGGA
ATGAACTCCGTATGCCGACACCAAACCACGAAACGAGCATGCGGGCAATGAGCCGACCGAAGAGG
CATAATGCACAAACCAGGGATAGACCCGGTCCCCTTCTGTGTGCTACCAGTCCCACTACCACAAC
CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGG
GCGTACGGGGGCTCAATCAGTCGAGAAGGCAGAATGCGCAAGTCAGGGATCGAGACGGTCCCCCT
TGCATGCTACCGATCCTACTGGTGCAACTCTCGTTCCAATCCGATCTTAGACTGGGAAAGAACTT
CGTATAATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATACGGACG
CTCAGCTGGCCGGAGAGGCAGAATGCATAAGCCGAGGATCGGCCCGATTCCTCCTACGTTCTGCC
GATCCTGCTGCTGGTCTTACTACCGCAACCCTCGGTCCGATTTGATT
Found at i:20708968 original size:26 final size:26
Alignment explanation
Indices: 20708939--20708991 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20708929 CCGGTCTGAT
*
20708939 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
20708965 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
20708991 C
1 C
20708992 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:20709518 original size:26 final size:26
Alignment explanation
Indices: 20709441--20709519 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20709431 CTGGTTCGAT
* * *
20709441 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGGATGAACTCCGTATG
*
20709467 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20709493 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20709519 C
1 C
20709520 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:20709812 original size:369 final size:369
Alignment explanation
Indices: 20709136--20709828 Score: 910
Period size: 369 Copynumber: 1.9 Consensus size: 369
20709126 TAGACTAGAA
* * * * * * * *
20709136 ATGAACTCTGTATGCCTAAGTTAACCCAAGAAATGAGCGTTCGAGTGCTGAGCCTGCTGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAACGTGCGAGCGCTGAGCCTGCCGAAGAGG
** * * *
20709201 CATAATGCGCAAGCTGGAGATCGGCTTGGTCCCCATCTATGTGCTGCCGGTCCTGCTGCCACAAC
66 CATAATGCGCAAGCTGGAGATCGGCCCGGTCCCCATCTACGTGCTGCCAGTCATGCTGCCACAAC
20709266 CCTCGGTTCGGCTGGGCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGG
131 CCTCGGTTCGGCTGGGCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGG
* * * ** * * * * * **
20709331 GTGTGTAGAAGCTTAGCCGGCCGGAGAGGTACAATGCGTAAGTCGGGGATCAGCCCGATCCCCCC
196 GCGTGGAGAAGCTCAGCCAACCAGAGAGGCACAATACGGAAGCCAAGGATCAGCCCGATCCCCCC
** * * * * * *
20709396 TGTGTGCTGCCGATCCTACTGTCCCAACCCTTGGTCTGGTTCGATCTTAGACTGGGAATGAACTC
261 TGCATGCTGCCAATCCTACTGTCCCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATAAACTC
20709461 TGTATACTTAGACTGGAGATGAACTCCGTATGCTTAGACTGGGG
326 TGTATACTTAGACTGGAGATGAACTCCGTATGCTTAGACTGGGG
* *
20709505 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTGAGCC-GACCGAAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAACGTGCGAGCGCTGAGCCTG-CCGAAGAG
* * *
20709569 GCATAATGCGCAAGCTGGAGATCGGCCCGGTCCCCCTCTGCGTGCTGCCAGTCATGCTGCCACTA
65 GCATAATGCGCAAGCTGGAGATCGGCCCGGTCCCCATCTACGTGCTGCCAGTCATGCTGCCACAA
*
20709634 CCTTCGG-TCTGGCTGGGCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
130 CCCTCGGTTC-GGCTGGGCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
* * * *
20709698 GGGCGTGCGAG-CGCTCAGCCAACCAGAGAGGCAGAATACGGAAGCCAAGGAT-TGACCCGGTCC
194 GGGCGTG-GAGAAGCTCAGCCAACCAGAGAGGCACAATACGGAAGCCAAGGATCAG-CCCGATCC
*
20709761 CCCCTGCATGCTGTCAATCCTACTG-CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATA
257 CCCCTGCATGCTGCCAATCCTACTGTCC-CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATA
20709825 AACT
321 AACT
20709829 TCGTATGCAT
Statistics
Matches: 275, Mismatches: 44, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
368 6 0.02
369 267 0.97
370 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (369 bp):
ATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAACGTGCGAGCGCTGAGCCTGCCGAAGAGG
CATAATGCGCAAGCTGGAGATCGGCCCGGTCCCCATCTACGTGCTGCCAGTCATGCTGCCACAAC
CCTCGGTTCGGCTGGGCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGG
GCGTGGAGAAGCTCAGCCAACCAGAGAGGCACAATACGGAAGCCAAGGATCAGCCCGATCCCCCC
TGCATGCTGCCAATCCTACTGTCCCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATAAACTC
TGTATACTTAGACTGGAGATGAACTCCGTATGCTTAGACTGGGG
Found at i:20710065 original size:159 final size:157
Alignment explanation
Indices: 20709492--20710068 Score: 482
Period size: 159 Copynumber: 3.6 Consensus size: 157
20709482 AACTCCGTAT
* * * *
20709492 GCTTAGAC-TGGGGATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCGC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * *
20709555 AGCCGACCGAAGAGGCATAATGCGCAAGCTGGAGATCGGCCCGGTCCCCCTCTGCGTGCTGCCAG
64 AGCCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGT-CCCCTCTGCATGCTGTCAA
* * * *
20709620 TCATGCTGCCACTACCTTCGGTCTGGCTGG
128 TCCTGCTGCCACAACCCTCGGTCTGGATGG
* * * *
20709650 GCCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGAGCGCTCA
1 G-CTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * *
20709715 GCCAACC-AGAGAGGCAGAATACGGAAGCCAAGGATTGACCCGGTCCCCCCTGCATGCTGTCAAT
65 GCCGACCGA-AGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCTCTGCATGCTGTCAAT
* * * *
20709779 CCTACTGCCGCAACCCTCGGTC-CGATCCGA
129 CCTGCTGCCACAACCCTCGGTCTGGAT--GG
* * * * * * * * * *
20709809 TCTTAGAC-TGGGAATAAACTTCG-TATGCATAAGTCAACCTATGAAACAAGTGTGCGGGCGTTG
1 GCTTAGACAT-GGAATGAAC-TCGCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * ** * * *
20709872 AGCCGACCGAAGAGGCATAAAACGTAAGTGGGGGATCGACCCGGTACCTCTTTGCATGCTGTCGA
64 AGCCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGT-CCCCTCTGCATGCTGTCAA
* *
20709937 TCCCGCTGACACAACCCTCGGTCTGGATAGG
128 TCCTGCTGCCACAACCCTCGGTCTGGAT-GG
* * * *
20709968 GCTTACACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
20710033 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCG
66 CCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCG
20710069 GGTGGAGAGG
Statistics
Matches: 321, Mismatches: 85, Indels: 25
0.74 0.20 0.06
Matches are distributed among these distances:
157 3 0.01
158 116 0.36
159 196 0.61
160 6 0.02
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCTCTGCATGCTGTCAATCC
TGCTGCCACAACCCTCGGTCTGGATGG
Found at i:20710076 original size:33 final size:33
Alignment explanation
Indices: 20710039--20710101 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
20710029 TCAGCCGGTC
20710039 GGAGAGGCAGAATGCACAAGCCGGGGATCGGGT
1 GGAGAGGCAGAATGCACAAGCCGGGGATCGGGT
* *
20710072 GGAGAGGCAGAATGCGCAAGTCGGGGATCG
1 GGAGAGGCAGAATGCACAAGCCGGGGATCG
20710102 ACCTGGTCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.27, C:0.17, G:0.46, T:0.10
Consensus pattern (33 bp):
GGAGAGGCAGAATGCACAAGCCGGGGATCGGGT
Found at i:20713068 original size:26 final size:26
Alignment explanation
Indices: 20713027--20713079 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20713017 TCTGGTCCAA
20713027 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
20713053 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTATATG
20713079 C
1 C
20713080 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:20713836 original size:501 final size:502
Alignment explanation
Indices: 20713176--20714305 Score: 1235
Period size: 501 Copynumber: 2.3 Consensus size: 502
20713166 ATCCTGCTAC
* * *
20713176 CACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATATGGAATGA
1 CACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
* ** * *
20713241 ACTCCGTATGCATAAGCCAACCCACAAAACGAACGTGC-AGGCGCTCAGCT-GACTGGAGAGGCA
66 ACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGA-GCGCTCAGCTGGAC-GGAGAGGCA
** * *
20713304 GAACGTACAAGCCTAGGATCGGCTCGATCCCT-CCTTGTGTGCTATTGATCCTGCTGCCACAACC
129 GAACGTACAAGCCTAGGATCGGCTCGATCCCTGCC-TACGTGCTATCGATCCTGCTACCACAACC
* *
20713368 ATCAGTTCGGTCCAATCTTAGACT-AGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
193 ATCAGTCCAGTCCAATCTTAGACTGA-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * ** * *
20713432 GCGTTCG-GACGCTGAACCAACC-GAATAGGGATAATGCATAAATTGAGGATCGACCCGGTCCCC
257 GCATTCGAG-CCCTGAACCAACCTG-AGAGGCATAATGCACAAACCGAGGATCAACCCAGTCCCC
* ** * * * * *
20713495 CTCTACGTGCTGTCAGTCCCGTTGCCACAACACTCTG-TCCGGTTGGGGCTTAGATATGGAATGA
320 CTCTACATGCTACCAGACCCGCTACCACAACACTC-GATCCGGTTGGGGCTTAGACATGGAATAA
* * * * * * * * *
20713559 ACTCCCTATGCCTAAGCCAATCCACGAAACGGGTGTGCGGGTGCTTAACCGATCGGAGAGGTAAA
384 ACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGAGCGCTCAACCGACCGGAAAGGCAAA
** ** * * * *
20713624 AT-TTTAAG-CTGGCGATCGGCCCGGTTCCCCT-TACGTGCTGTCGATCCTGCTGT
449 ATGTGCAAGTCAAG-GATCAGCCC-GATCCCCTCTACGTGCTGTCAATCCTACTGT
** * * * * *
20713677 CGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGTATAA
1 CACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
* * * *
20713742 ACTCCGTATGCCTAACCCAACCCATGAAATGAGCGTGCGAGCGCTCAGCTGGGCGGAGATGTAGA
66 ACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAGCTGGACGGAGAGGCAGA
* * * * ** *
20713807 ATGTGCAAG-CTAGGGA-CAGGCTTGATCCCTGCCTACGTGCTGTCGATCCTGCTACTGCAACCC
131 ACGTACAAGCCTA-GGATC-GGCTCGATCCCTGCCTACGTGCTATCGATCCTGCTACCACAACCA
* *
20713870 TCAGTCCAGTCCGATCTTAGACTGAGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
194 TCAGTCCAGTCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* ** * *
20713935 ATTCGAGCCCTGAGCCGGCCTGAGAGGCATAATGCGCAAGCCGAGGATCAACCCAGTCCCCCTCT
259 ATTCGAGCCCTGAACCAACCTGAGAGGCATAATGCACAAACCGAGGATCAACCCAGTCCCCCTCT
*
20714000 ACATGCTACCAGACCCGCTACCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATAAACTCC
324 ACATGCTACCAGACCCGCTACCACAACACTCGATCCGGTTGGGGCTTAGACATGGAATAAACTCC
* * * *
20714065 CTATGCCTAAGCCAACCCGCGAAACAGGCGTGTGAGCGCTCAACTGACCGGAAAGGCAGAATGTG
389 CTATGCCTAAGCCAACCCACGAAACAGGCGTGCGAGCGCTCAACCGACCGGAAAGGCAAAATGTG
** *
20714130 CAAGTCAAGGATCAGCCCGATCCCCTCTGTGTGTTGTCAATCCTACTGT
454 CAAGTCAAGGATCAGCCCGATCCCCTCTACGTGCTGTCAATCCTACTGT
* * *
20714179 CACAACCCTCTA-TTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGAT
1 CACAACCCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAAT
* * * * * *
20714242 GAACTCCGTATGCCTAGGTCAACCCATGAAATGAGCGTGTGGGCGCTCAGCCGGCCGGAGAGGC
64 GAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAGCTGGACGGAGAGGC
20714306 TGGCCGGAGA
Statistics
Matches: 516, Mismatches: 99, Indels: 27
0.80 0.15 0.04
Matches are distributed among these distances:
500 5 0.01
501 366 0.71
502 143 0.28
503 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (502 bp):
CACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
ACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAGCTGGACGGAGAGGCAGA
ACGTACAAGCCTAGGATCGGCTCGATCCCTGCCTACGTGCTATCGATCCTGCTACCACAACCATC
AGTCCAGTCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT
TCGAGCCCTGAACCAACCTGAGAGGCATAATGCACAAACCGAGGATCAACCCAGTCCCCCTCTAC
ATGCTACCAGACCCGCTACCACAACACTCGATCCGGTTGGGGCTTAGACATGGAATAAACTCCCT
ATGCCTAAGCCAACCCACGAAACAGGCGTGCGAGCGCTCAACCGACCGGAAAGGCAAAATGTGCA
AGTCAAGGATCAGCCCGATCCCCTCTACGTGCTGTCAATCCTACTGT
Found at i:20714231 original size:26 final size:26
Alignment explanation
Indices: 20714202--20714254 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20714192 TCAGTCCGAT
20714202 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20714228 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20714254 C
1 C
20714255 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20714312 original size:13 final size:13
Alignment explanation
Indices: 20714294--20714331 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
20714284 GCGCTCAGCC
20714294 GGCCGGAGAGGCT
1 GGCCGGAGAGGCT
20714307 GGCCGGAGAGGCT
1 GGCCGGAGAGGCT
*
20714320 GGTCGGAGAGGC
1 GGCCGGAGAGGC
20714332 AGAATATGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.16, C:0.21, G:0.55, T:0.08
Consensus pattern (13 bp):
GGCCGGAGAGGCT
Found at i:20714828 original size:67 final size:67
Alignment explanation
Indices: 20714720--20714852 Score: 230
Period size: 67 Copynumber: 2.0 Consensus size: 67
20714710 CCGGTCCCCT
* *
20714720 CTGTGTGCTACCAATCCTGCTGTCGTCACCCTCAGTCTGGTCCAACTTAGACTGGGAATGAACTC
1 CTGTGTGCTACCAATCCTGCTGTCGTAACCCTAAGTCTGGTCCAACTTAGACTGGGAATGAACTC
20714785 CC
66 CC
* *
20714787 CTGTGTGCTACCGATCCTGCTGTCGTAACTCTAAGTCTGGTCCAACTTAGACTGGGAATGAACTC
1 CTGTGTGCTACCAATCCTGCTGTCGTAACCCTAAGTCTGGTCCAACTTAGACTGGGAATGAACTC
20714852 C
66 C
20714853 GTATGCTTAG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (67 bp):
CTGTGTGCTACCAATCCTGCTGTCGTAACCCTAAGTCTGGTCCAACTTAGACTGGGAATGAACTC
CC
Found at i:20714868 original size:26 final size:26
Alignment explanation
Indices: 20714832--20714884 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20714822 TCTGGTCCAA
20714832 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20714858 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20714884 C
1 C
20714885 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20715077 original size:26 final size:26
Alignment explanation
Indices: 20715027--20715079 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20715017 TTGATCCGAT
**
20715027 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20715053 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20715079 C
1 C
20715080 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20715374 original size:158 final size:158
Alignment explanation
Indices: 20715052--20715389 Score: 353
Period size: 158 Copynumber: 2.1 Consensus size: 158
20715042 AACTTTGTAT
* * *
20715052 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCAAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * ** **
20715117 CCGGTCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTCGATCCCCTTTTGCATGCTGCCTGTC
66 CCGCTCGGAGAGGCAAAATGCGAAAGTCGAGGATCGGCTCGATCCCCTCCTGCATGCTGCCAATC
* * * *
20715182 CCGCTGCCACAACCCTTGGTCCGACTGG
131 CCGCTACCACAACCCTCGATCCGACTGA
* * *
20715210 GGTTAGACATGGAATGAACTCCCTATACCTAAGCAAACCCACGAAAC-AGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCAAACCCACGAAACGA-GCATGCGGGCGCTCA
* * * *
20715274 GCCGACT-GGAGAGGCAAAATGCGAAAGTC-AGGGATCGGTTCGGTCCCC-CCTGCGTGCTGCCA
65 ACCG-CTCGGAGAGGCAAAATGCGAAAGTCGA-GGATCGGCTCGATCCCCTCCTGCATGCTGCCA
* *** *
20715336 ATCCTGCTATTGCAACCCTCGATCCTGTCTGA
128 ATCCCGCTACCACAACCCTCGATCC-GACTGA
*
20715368 TCTTAGAC-TGGGAATGAACTCC
1 GCTTAGACAT-GGAATGAACTCC
20715390 ATATGCTTAT
Statistics
Matches: 147, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
157 30 0.20
158 116 0.79
159 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATACCTAAGCAAACCCACGAAACGAGCATGCGGGCGCTCAA
CCGCTCGGAGAGGCAAAATGCGAAAGTCGAGGATCGGCTCGATCCCCTCCTGCATGCTGCCAATC
CCGCTACCACAACCCTCGATCCGACTGA
Found at i:20715604 original size:26 final size:26
Alignment explanation
Indices: 20715566--20715618 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20715556 CTGGTCCGAT
*
20715566 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20715592 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20715618 C
1 C
20715619 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20715849 original size:539 final size:537
Alignment explanation
Indices: 20714832--20715828 Score: 1160
Period size: 539 Copynumber: 1.9 Consensus size: 537
20714822 TCTGGTCCAA
* *
20714832 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC
* * * * * * * *
20714897 ATGAAATGAGCGTTCGGGCGCTCAACTAGTCAGAGAGGCAGAATGCGTAAGCTAAGGATGGCCCA
66 ACGAAACGAGCGTGCGGGCACTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCAAGGATGGCCCA
* * * * * *
20714962 ATCTCCCCTACGTGCTATCGATCCTACTGCTGGTCCTGTTACCGCAACCCTCAGTTTGATCCGAT
131 ATCCCCCCTACGTGCTACCGATCCTACTACTGGTCATGCTACCGCAACCCTCAGTCTGATCCGAT
*
20715027 CTTAGACTGGGAATGAACTTTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
196 CTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * *
20715092 ACGAAACGAGCATGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCTC
261 ACGAAACGAGCATGCGGGCACTCAACCGATCGGAAAGGCAGAATGCGTAAGCCGAGGATCGGCAC
* * * *** ** *
20715157 GATCCCCTTTTGCATGCTGCCTGTCCCGCTGCCACAACCCTTGGTCCGACTGGGGTTAGACATGG
326 GATCCCCTCTTACATGCTGCCTGTCCCGCTACCACAACCCTCAATCCGACTAAGCTTAGACATGG
* * * * * ** * *
20715222 AATGAACTCCCTATACCTAAGCAAACCCACGAAACAGGCGTGCGGGTGCTCAGCCGACTGGAGAG
391 AATGAACTCCCTATACCTAAGCAAACCAACAAAACAAGCATGCAGGCACTCAGCAGACCGGAGAG
*
20715287 GCAAAATGCGAAAGTCAGGGATCGGTTCGGTCCCCCCTGCGTGCTGCCAATCCTGCTATTGCAAC
456 GCAAAATGCGAAAGCCAGGGATCGGTTCGGTCCCCCCTGCGTGCTGCCAATCCTGCTATTGCAAC
20715352 CCTCGATCCTGTCTGAT
521 CCTCGATCCTGTCTGAT
* * * *
20715369 CTTAGACTGGGAATGAACTCCATATGCTTATATTGGGGATGAACTCCATTTGCCTAAGTCAACTC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC
* * * * **
20715434 ACGAAACGAGTGTGCGGGCACTCAACCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGGGTC
66 ACGAAACGAGCGTGCGGGCACTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCAAGGAT-GGCCC
* * * * ** * * *
20715499 GATCCCCTCCTGCGTGCTGCCGATCCTGCTACTGGTCATGCTGTCGTAACCCT-TGATCTGGTCC
130 AATCCCC-CCTACGTGCTACCGATCCTACTACTGGTCATGCTACCGCAACCCTCAG-TCTGATCC
20715563 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
193 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* **
20715628 CCCACGAAACGAGCCTGCGGGCACTCAGTCGATCGGAAAGGCAGAATGCGTAAGCCGAGGA-CGG
258 CCCACGAAACGAGCATGCGGGCACTCAACCGATCGGAAAGGCAGAATGCGTAAGCCGAGGATCGG
* ** * *** * * *
20715692 ACACGATCCCC-CTTACATGCTGTC-GATCTTGTTATTGCAATCCTCAATCCGGTCTAATCTTAG
323 -CACGATCCCCTCTTACATGCTGCCTG-TCCCGCTACCACAACCCTCAATCC-GACTAAGCTTAG
** * * * * *
20715755 AC-TGGGAATGAACTCTGTATGCCTAAGTC-ATCCAACAAAATAAGCATTCAGGCACTGAGCAGA
385 ACAT-GGAATGAACTCCCTATACCTAAG-CAAACCAACAAAACAAGCATGCAGGCACTCAGCAGA
20715818 CCGGAGAGGCA
448 CCGGAGAGGCA
20715829 TAATTTGCAA
Statistics
Matches: 373, Mismatches: 79, Indels: 14
0.80 0.17 0.03
Matches are distributed among these distances:
537 107 0.29
538 36 0.10
539 229 0.61
540 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (537 bp):
CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCACTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCAAGGATGGCCCA
ATCCCCCCTACGTGCTACCGATCCTACTACTGGTCATGCTACCGCAACCCTCAGTCTGATCCGAT
CTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCATGCGGGCACTCAACCGATCGGAAAGGCAGAATGCGTAAGCCGAGGATCGGCAC
GATCCCCTCTTACATGCTGCCTGTCCCGCTACCACAACCCTCAATCCGACTAAGCTTAGACATGG
AATGAACTCCCTATACCTAAGCAAACCAACAAAACAAGCATGCAGGCACTCAGCAGACCGGAGAG
GCAAAATGCGAAAGCCAGGGATCGGTTCGGTCCCCCCTGCGTGCTGCCAATCCTGCTATTGCAAC
CCTCGATCCTGTCTGAT
Found at i:20717390 original size:158 final size:158
Alignment explanation
Indices: 20716817--20717476 Score: 539
Period size: 158 Copynumber: 4.2 Consensus size: 158
20716807 AACTCCGTAT
* *
20716817 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
1 GCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * *
20716881 GCCGGTCGAAAAGGCAAAATGCGCAAGCCAGGGA-CCGACCCGGTCCCCCCTGTGTGCTGTCAAT
65 GCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAG-CCCGGTCCCCCCTATGTGCTGTCGAT
* *
20716945 CCTGCTGCCGTAACCCTCGGTTTC-GTCCGA
129 CCTGCTGGCGTAACCCTCGG-TTCGGTTCGA
* * * * * * * *
20716975 TCTTAGATTGGGAATGAACTCCGTATGCCTAA-GCTAACCCACCAAAAGAGCATACGGGCGCTTA
1 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGGC-AACCCACGAAACGAGCGTGCGGGCACTCA
*** * * * *
20717039 GCCGGCCGGAGAGGCAGAATGCACAAGTTGGGGACCGGTCCGATCCCCCCTTATGTGCTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCC-TATGTGCTGTCGAT
* *
20717104 CCTG-TGGTCGCAACCCTCGGTCCGGTTCGA
129 CCTGCTGG-CGTAACCCTCGGTTCGGTTCGA
* * * ** * * *
20717134 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATTAGCGTTCAGGCACTAAG
1 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * ** * ** *
20717199 CCGGTCGGAGAGGCATAATGCGCAAGTTAGGGATCAGCCCGGTCCTCCTCTACATGCTGCCGATC
66 CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCC-CCCCTATGTGCTGTCGATC
* * * * *
20717264 CCGCTGGCATAACCCTCTGTTCGGTTGGG
130 CTGCTGGCGTAACCCTCGGTTCGGTTCGA
* * * *
20717293 GCTT-GACAT-GGAATGAACTCCCTATGCCTAAGGCAACCCACGAAACGGGCGTGTGGGCGCTCA
1 GCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * **
20717356 GCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATC-GACCCAGT-CCCCCTGCGTGCTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAG-CCCGGTCCCCCCTATGTGCTGTCGAT
* * * * *
20717419 CCTGCTGTCGCAACCCTCAG-TCCGATCTGA
129 CCTGCTGGCGTAACCCTCGGTTCGGTTC-GA
* * * *
20717449 TCTTAGACTGGGAAAGAACCCCGTATGC
1 GCTTAGAATGGGAATGAACTCCGTATGC
20717477 TTAGACTGGG
Statistics
Matches: 395, Mismatches: 93, Indels: 29
0.76 0.18 0.06
Matches are distributed among these distances:
155 4 0.01
156 34 0.09
157 21 0.05
158 170 0.43
159 159 0.40
160 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGAATGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTATGTGCTGTCGATCC
TGCTGGCGTAACCCTCGGTTCGGTTCGA
Found at i:20717486 original size:26 final size:26
Alignment explanation
Indices: 20717450--20717502 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20717440 CCGATCTGAT
20717450 CTTAGACTGGGAAAGAACCCCGTATG
1 CTTAGACTGGGAAAGAACCCCGTATG
* * *
20717476 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACCCCGTATG
20717502 C
1 C
20717503 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACCCCGTATG
Found at i:20717677 original size:184 final size:183
Alignment explanation
Indices: 20717305--20718041 Score: 716
Period size: 184 Copynumber: 3.9 Consensus size: 183
20717295 TTGACATGGA
* * * **
20717305 ATGAACTCCCTATGCCTAAGGCAACCCACGAAACGGGCGTGTGGGCGCTCAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGTGGGCGCTCAGCCGACCGGAGAGG
* * **
20717370 CAGAATGCACAAGCCGGGGATCGACCC-AGTCC-CCCTGCGTGCTG-TCGATCCTGCTGTCGCAA
66 CAGAATGCGCAAGCCGGAGATCGACCCGA-TCCTCCCTGCGTGCTGCT-GATCCTGCTACCGCAA
* * * *
20717432 CCCTCAGTCCGATCTGATCTTAGACTGGGAAAGAACCCCGTATGCTTAGACTGGGG
129 CCCTCAGTCCGATCTAATCTTAGACTAGGAAAGAACTCCATATGCTTAGACT-GGG
* * *
20717488 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGTGGGTGCTCAACCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGTGGGCGCTCAGCCGACCGGAGAGG
* * * * * *
20717553 CAGAATGCGCAAGTCGGAGATTGGCCCGATCCTCCTTGTGTGCTGCTGATCTTGCTACCGCAACC
66 CAGAATGCGCAAGCCGGAGATCGACCCGATCCTCCCTGCGTGCTGCTGATCCTGCTACCGCAACC
* * *
20717618 CTCGGTCTGGTCTAATCTTAGACTAGGAAAGAACTCCATATGCTTAGACTGGCG
131 CTCAGTCCGATCTAATCTTAGACTAGGAAAGAACTCCATATGCTTAGACTGG-G
* * * * *
20717672 ATGAACTCCGTGTGCCTAAGTCAACCCATGAAACGAACATGTGGGCGCTCAGTCGGCCGAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGTGGGCGCTCAGCCGACCGGAGAGG
* * * *
20717737 CAGAATGCGCAAGTC-GAGGATCGACCCGATCCCCCCCTGCGTGCT-ATCGATCCTGCTGCTGGT
66 CAGAATGCGCAAGCCGGA-GATCGACCCGAT-CCTCCCTGCGTGCTGCT-GAT-C--CTGCT--A
* * * **
20717800 CCTGTTGCCGTAACCCTCAGTCCGATCTGATCTTACACTGGGATTGAACTCCATATGCTTAGACA
123 CC----G-C--AACCCTCAGTCCGATCTAATCTTAGACTAGGAAAGAACTCCATATGCTTAGAC-
*
20717865 TGGA
180 TGGG
* * * *
20717869 ATGAACTCCGTATGCCTAAGCCAACCCATGGAAC-AAGCGTGTGGGAGCTCAGTCGACCGGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAA-CGTGTGGGCGCTCAGCCGACCGGAGAG
* * * * * *
20717933 GTAGAATGCGTAAGCCTGG-GACCGGCCCGGTCCCCCCTGCGTGCTGTCT-ATCCTGCTACCGCA
65 GCAGAATGCGCAAGCC-GGAGATCGACCCGATCCTCCCTGCGTGCTG-CTGATCCTGCTACCGCA
* * * * *
20717996 ACCCTTAGTCTGATCCAATCTTAGACTAGGAATGAACTCCGTATGC
128 ACCCTCAGTCCGATCTAATCTTAGACTAGGAAAGAACTCCATATGC
20718042 CTAAGTCAAC
Statistics
Matches: 456, Mismatches: 73, Indels: 49
0.79 0.13 0.08
Matches are distributed among these distances:
183 86 0.19
184 192 0.42
185 15 0.03
186 2 0.00
187 1 0.00
188 4 0.01
190 2 0.00
191 2 0.00
193 5 0.01
194 1 0.00
195 2 0.00
196 18 0.04
197 121 0.27
198 4 0.01
199 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (183 bp):
ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGTGGGCGCTCAGCCGACCGGAGAGG
CAGAATGCGCAAGCCGGAGATCGACCCGATCCTCCCTGCGTGCTGCTGATCCTGCTACCGCAACC
CTCAGTCCGATCTAATCTTAGACTAGGAAAGAACTCCATATGCTTAGACTGGG
Found at i:20718378 original size:26 final size:26
Alignment explanation
Indices: 20718349--20718401 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20718339 GTTGACTTAG
20718349 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20718375 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20718401 G
1 G
20718402 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20718728 original size:26 final size:26
Alignment explanation
Indices: 20718692--20718744 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20718682 GTTGGCTTAG
20718692 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20718718 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20718744 G
1 G
20718745 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20718763 original size:343 final size:343
Alignment explanation
Indices: 20718322--20718943 Score: 793
Period size: 343 Copynumber: 1.8 Consensus size: 343
20718312 CTGAGCGCCC
*
20718322 GTACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTT
1 GTACACTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTT
** * * * * * * *
20718387 CATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTACGATAGTAGGATCGATAGCACACTGGGAG
66 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGACAGCACACAGGGAG
* * * ** ** * * * *
20718452 AACCTGGCTGATCCCCGGCTTGCACATTCTGGCTCTCCCGCT-GGTTGAGGGCTCGTAC-ACCCG
131 AACCGGGCCGATCCCCAGCTTGCACATTCTACCTCT-CCGCTCGACTGAGCGCCCGCACGA-CCA
** *
20718515 TTTTGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTT
194 TTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTT
*
20718580 GTGGCAGC-GAGACCGGCAGCATGCAGAGAGTGACCGAAATGATCCCCGGCTTGCGCATTCTGCC
259 GTGGCAACGGA-ACCGGCAGCATGCAGAGAGTGACCGAAATGATCCCCGGCTTGCGCATTCTGCC
20718644 TCTTCGATCGGCTAAGCGCTT
323 TCTTCGATCGGCTAAGCGCTT
* * * *
20718665 GTACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGT
1 GTACACTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGT
* * * * * *
20718729 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACCGCAAGATTGGCAGCACGCAGGGT
65 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGACAGCACACAGGGA
* * * *
20718794 GGACCGGGCCGATCCTCAGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCCCGCACGACCAT
130 GAACCGGGCCGATCCCCAGCTTGCACATTCTACCTCTCCGCTCGACTGAGCGCCCGCACGACCAT
* * * *
20718859 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAGTCAGATCGAGGTTTG
195 TTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTG
20718924 TGGCAACGGAACCGGCAGCA
260 TGGCAACGGAACCGGCAGCA
20718944 CGTAGAGGGG
Statistics
Matches: 232, Mismatches: 43, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
342 7 0.03
343 222 0.96
344 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (343 bp):
GTACACTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGACAGCACACAGGGAG
AACCGGGCCGATCCCCAGCTTGCACATTCTACCTCTCCGCTCGACTGAGCGCCCGCACGACCATT
TCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGT
GGCAACGGAACCGGCAGCATGCAGAGAGTGACCGAAATGATCCCCGGCTTGCGCATTCTGCCTCT
TCGATCGGCTAAGCGCTT
Found at i:20718991 original size:343 final size:343
Alignment explanation
Indices: 20718285--20718991 Score: 783
Period size: 343 Copynumber: 2.1 Consensus size: 343
20718275 CTGATCCTTT
* * * *
20718285 GCTTACGTATTTTACCTCTTCGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGAGTTGACTTAGG
1 GCTTACGTATTCTACCTCTTCGACCGACTAAGCGCCCGTACACTCGTTTCGTGAGTTGACTTAGG
** * *
20718350 CATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGATC
66 CATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * * * *
20718415 GAGGGTTACGATAGTAGGATCGATAGCACACTGGGAGAACCTGGCTGATCCCCGGCTTGCACATT
131 GAGGGTTACGACAGCAAGATCGACAGCACACAGGGAGAACCGGGCCGATCCCCAGCTTGCACATT
** ** * * * * **
20718480 CTGGCTCTCCCGCTGGTTGAGGGCTCGTACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGCT
196 CTACCTCTCCCGCTGACTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGCT
* * *
20718545 CATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGAGACCGGCAGCATGCAGAGAG
261 CATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAACGAGACCGGCAGCACGCAGAGAG
* * *
20718610 TGACCGAAATGATCCCCG
326 GGACCGAAACGATCCCCA
* * * * * ** * * *
20718628 GCTTGCGCATTCTGCCTCTTCGATCGGCTAAGCGCTTGTACACTCGTTTTGTGGGTTGGCTTAGG
1 GCTTACGTATTCTACCTCTTCGACCGACTAAGCGCCCGTACACTCGTTTCGTGAGTTGACTTAGG
*
20718693 CATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
66 CATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * * * *
20718757 CGAGGGTTGCGACCGCAAGATTGGCAGCACGCAGGGTGGACCGGGCCGATCCTCAGCTTGCGCAT
130 CGAGGGTTACGACAGCAAGATCGACAGCACACAGGGAGAACCGGGCCGATCCCCAGCTTGCACAT
*
20718822 TCTACCTCT-CCGGTCGACTGAGCGCCCGCACGA-CCATTTCATGGGTTGGCTTAGGCATAGGGA
195 TCTACCTCTCCCGCT-GACTGAGCGCCCGCAC-ACCCATTTCATGGGTTGGCTTAGGCATAGGGA
* * * * *
20718885 GTTCATTCCATGTCTAAGCTCCAGTCAGATCGAGGTTTGTGGCAACG-GAACCGGCAGCACGTAG
258 GCTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAACGAG-ACCGGCAGCACGCAG
* ***
20718949 AGGGGGACCGGGCCGATCCCCA
322 AGAGGGACCGAAACGATCCCCA
*
20718971 GCTTATGTATTCTACCTCTTC
1 GCTTACGTATTCTACCTCTTC
20718992 CACCAGTTGA
Statistics
Matches: 294, Mismatches: 66, Indels: 8
0.80 0.18 0.02
Matches are distributed among these distances:
342 8 0.03
343 285 0.97
344 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (343 bp):
GCTTACGTATTCTACCTCTTCGACCGACTAAGCGCCCGTACACTCGTTTCGTGAGTTGACTTAGG
CATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
GAGGGTTACGACAGCAAGATCGACAGCACACAGGGAGAACCGGGCCGATCCCCAGCTTGCACATT
CTACCTCTCCCGCTGACTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGCT
CATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAACGAGACCGGCAGCACGCAGAGAG
GGACCGAAACGATCCCCA
Found at i:20719669 original size:26 final size:26
Alignment explanation
Indices: 20719620--20719671 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20719610 GTCGGTTTAG
* *
20719620 GCATACGGAGTTTATTCCACGTCTAA
1 GCATACGGAGTTCATCCCACGTCTAA
20719646 GCATACGGAGTTCAGTCCCA-GTCTAA
1 GCATACGGAGTTCA-TCCCACGTCTAA
20719672 AATTTTGAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCACGTCTAA
Found at i:20721077 original size:26 final size:26
Alignment explanation
Indices: 20721041--20721093 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20721031 GTTGGCTTAG
20721041 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20721067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20721093 G
1 G
20721094 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20722344 original size:27 final size:27
Alignment explanation
Indices: 20722314--20722370 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
20722304 TTCATGGTTT
* * *
20722314 GTCTTAGGCATACGGAGTTCATCCCCA
1 GTCTTAAGCATACGAAGTTCATCCCAA
*
20722341 GTC-TAAGCATACGAAGTTCATTCCAA
1 GTCTTAAGCATACGAAGTTCATCCCAA
20722367 GTCT
1 GTCT
20722371 AAGATCAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
GTCTTAAGCATACGAAGTTCATCCCAA
Found at i:20722358 original size:26 final size:26
Alignment explanation
Indices: 20722321--20722373 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20722311 TTTGTCTTAG
* *
20722321 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
*
20722347 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
20722373 G
1 G
20722374 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:20722489 original size:184 final size:183
Alignment explanation
Indices: 20722263--20722899 Score: 704
Period size: 184 Copynumber: 3.5 Consensus size: 183
20722253 CTCGGCTTAC
* * * * * * *
20722263 GCATTCTACCTCTCCGGCCGGCTGAGCGCCTGTATGCTCGTTTCATGGTTTGTCTTAGGCATACG
1 GCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* * * *
20722328 GAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGG
66 GAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* * *
20722392 TTACGGCAGTAGGATCGACAGTATGCAGGGGGGATCGGGCCGGTCCCCAGCTTGT
130 TTACGGCAGCAGGATCGACAGCATGCAGGGGGGATCGGGCC-ATCCCCAGCTTGT
* * * * * *
20722447 GCATTCTACCTCTCCGGCCGGCTGAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGAATACA
1 GCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* * * * * * *
20722512 GAGTTCAATCCAGGTTTAAGCATATGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCAAAGGT
66 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* * * ** *
20722577 TACGGTAGCAGGATTGGCAGCACT-CAGGGGGGATCGGGCTCATCCCTGGCTTGC
131 TACGGCAGCAGGATCGACAGCA-TGCAGGGGGGATCGGGC-CATCCCCAGCTTGT
* * * * * * * *
20722631 ACATTCTGCATCTCCAGCTGGCTGAGCGCCTGCATGCTCATTTCGTGGGTTGGCTTAAGCATACG
1 GCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* * ** *
20722696 GAGTTAATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGTTCGGATCGAGGGT
66 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* * * *
20722761 TACGGCAGCAGGATCGACAGCACGCAGGGGGGA-CGTGCCAATCCCCTGCTTTT
131 TACGGCAGCAGGATCGACAGCATGCAGGGGGGATCGGGCC-ATCCCCAGCTTGT
* ** * * *
20722814 GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGG
1 GCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
20722879 GAGTTCATTCCATGTCTAAGC
66 GAGTTCATTCCATGTCTAAGC
20722900 CCCAGTCGGA
Statistics
Matches: 371, Mismatches: 77, Indels: 11
0.81 0.17 0.02
Matches are distributed among these distances:
182 1 0.00
183 89 0.24
184 279 0.75
185 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (183 bp):
GCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
TACGGCAGCAGGATCGACAGCATGCAGGGGGGATCGGGCCATCCCCAGCTTGT
Found at i:20722715 original size:26 final size:26
Alignment explanation
Indices: 20722686--20722741 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
20722676 TGGGTTGGCT
20722686 TAAGCATACGGAGTTAATT-CCATGTC
1 TAAGCATACGGAGTTAATTCCCA-GTC
*
20722712 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTAATTCCCAGTC
20722738 TAAG
1 TAAG
20722742 ATCGGTTCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTAATTCCCAGTC
Found at i:20723054 original size:158 final size:157
Alignment explanation
Indices: 20722715--20723058 Score: 374
Period size: 158 Copynumber: 2.2 Consensus size: 157
20722705 CCATGTCTAA
* *
20722715 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGTTCGGATCGAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCACCAGTTCGGATCGAGGGTTACGGCAGCAGGATCGAC
* * * * *** * *
20722779 AGCACGCAGGGGGGACGTGCCAATCCCCTGCTTTTGCATTCTGCCTCTCCGATCGGCTGAGCGCC
66 AGCACACAGGAGGGACGGGCCAATCCCCGGCTTGCACATTATGCCTCTCCGATCGGC-GAGCACC
* * * *
20722844 CGCACGCCCATTTTGTGGGTTGGCTTAG
130 CGAACACCCATTTGGTGGGTTGACTTAG
* * **
20722872 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCAGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGCACCAGTTCGGATCGAGGGTTACGGCAGCAGGATC-G
* * * * *
20722934 GCAGCACATAGAGAGGGACCGGGCCGATGCTCGGCTTGCACATTATGCCTCTCCGATCGG-GCAG
64 ACAGCACACAG-GAGGGA-CGGGCCAATCCCCGGCTTGCACATTATGCCTCTCCGATCGGCG-AG
*
20722998 CACCCGAACACTCATTTGGTGGGTTGACTTAG
126 CACCCGAACACCCATTTGGTGGGTTGACTTAG
20723030 GCATACGGAGTTCATTCCCAGTCTAAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGCA
20723059 GCAGGATCGA
Statistics
Matches: 153, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
156 4 0.03
157 56 0.37
158 58 0.38
159 35 0.23
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCACCAGTTCGGATCGAGGGTTACGGCAGCAGGATCGAC
AGCACACAGGAGGGACGGGCCAATCCCCGGCTTGCACATTATGCCTCTCCGATCGGCGAGCACCC
GAACACCCATTTGGTGGGTTGACTTAG
Found at i:20723385 original size:26 final size:26
Alignment explanation
Indices: 20723349--20723399 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20723339 TGACTTAGGC
*
20723349 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAATCTAAGT
*
20723375 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATCCCCAATCTAAG
20723400 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAATCTAAGT
Found at i:20723842 original size:26 final size:26
Alignment explanation
Indices: 20723806--20723858 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20723796 GTTGGCTTAG
20723806 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20723832 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20723858 G
1 G
20723859 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20724402 original size:159 final size:158
Alignment explanation
Indices: 20724041--20724404 Score: 352
Period size: 159 Copynumber: 2.3 Consensus size: 158
20724031 CCTAATCTAA
* * * * * **
20724041 GCATATGGAGCTCATTCCCAGTCTAAGGTCGGATCGGACCGAGGGTTACGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * ** * **
20724106 GCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGTGTATTTTTCCTCTCCGATTGGCTGAATGCC
66 GCACGCAAGGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGATCAGCTCAACACC
* * * **
20724171 CACACGCCCGTTTCATGGGTTGGCTTAG
131 CAAACACCCATTTCATGGGTTGAATTAG
* ** * ** * ** * *
20724199 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGATTGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGACCGAGGGTTACGGCAGCAGGATCGAC
* * * * *
20724263 AGCCCGCAGAGGGGGATCGGGCCGTTCCCCGACTTGTGCATTATGCCTCTCCGGTCAGCTCAGCA
65 AGCACGCA-AGGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGATCAGCTCAACA
*
20724328 CCCAAACACTCATTTCATGGGTTGAATTAG
129 CCCAAACACCCATTTCATGGGTTGAATTAG
*
20724358 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTT
20724405 TGCTGCCAGT
Statistics
Matches: 159, Mismatches: 44, Indels: 5
0.76 0.21 0.02
Matches are distributed among these distances:
157 3 0.02
158 51 0.32
159 102 0.64
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAAGGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGATCAGCTCAACACC
CAAACACCCATTTCATGGGTTGAATTAG
Found at i:20724862 original size:26 final size:26
Alignment explanation
Indices: 20724826--20724878 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20724816 GTTGACTTAG
20724826 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20724852 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20724878 G
1 G
20724879 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20725357 original size:26 final size:26
Alignment explanation
Indices: 20725315--20725367 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20725305 GTTGGCTTAG
20725315 GCATACGAAGATTATT-CCATGTCTAA
1 GCATACGAAGATTATTCCCA-GTCTAA
*
20725341 GCATATGAAG-TTCATTCCCAGTCTAA
1 GCATACGAAGATT-ATTCCCAGTCTAA
20725367 G
1 G
20725368 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 19 0.79
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGATTATTCCCAGTCTAA
Found at i:20726688 original size:26 final size:26
Alignment explanation
Indices: 20726651--20726703 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20726641 GTTGACTTAG
*
20726651 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20726677 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20726703 G
1 G
20726704 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20727178 original size:26 final size:26
Alignment explanation
Indices: 20727128--20727180 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20727118 GTTGGCTTAG
*
20727128 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20727154 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20727180 G
1 G
20727181 ATCGAATCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20727525 original size:26 final size:26
Alignment explanation
Indices: 20727495--20727547 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20727485 GTTGACTTAG
20727495 GCATACGGAGTTC-ATCCCCAGTCTAA
1 GCATACGGAGTTCAAT-CCCAGTCTAA
*
20727521 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
20727547 G
1 G
20727548 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:20727827 original size:159 final size:159
Alignment explanation
Indices: 20727554--20728087 Score: 479
Period size: 159 Copynumber: 3.4 Consensus size: 159
20727544 TAAGATCAGA
* * ** * * *
20727554 CCGGATCGAGGGTTGTGACTGCAAGATCGACAGCATGCAG-GGGGGATCGGG-CGATCCAC-GGC
1 CCGGACCGAGGGTTGTGACAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCC-CTGGC
** * * * * *
20727616 TTGCGCATGCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCA
65 TTGCGCATTATGCCTCTTCGACCGACTCAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGCA
*
20727681 TAGGGAGTTCACTCCATGTCTAAGCCCCAG
130 TAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * *
20727711 TCGGACCGAGGGTTATGACAGTGGGACCGACAACACGCAGAGGGGGACCGGG-CTGATCCCTGGC
1 CCGGACCGAGGGTTGTGACAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTC-GATCCCTGGC
* *** * * ** * * *
20727775 TTGCGTATTATGCCTCTTCGGTTGGCTCAGCACCTACACGTTCATTTTGTGGGTTGACTTATGCA
65 TTGCGCATTATGCCTCTTCGACCGACTCAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGCA
* **
20727840 TACGGAGTTCATTCCCA-GTCTAAG-ATCAG
130 TAGGGAGTTCATT-CCATGTCTAAGCCCCAG
* * * * * * * * **
20727869 ACCAGACTGAGGGTTGCGACAACAGGATCTACAGCACACAG-GAGGGGATTGGGTCGATCCCTGG
1 -CCGGACCGAGGGTTGTGACAGCGGGACCGACAGCACGCAGAG-GGGGACCGGGTCGATCCCTGG
* * * * *
20727933 CTTGTGCATTTTGCCTCTTCGACCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
64 CTTGCGCATTATGCCTCTTCGACCGACTCAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGC
* *
20727998 ATAGGGAGTTCATTCCATGTCGAAGCCCCAA
129 ATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * **
20728029 CCGGACCGAGGGTTGTGGCAGCGGGACCGACAGGAAGCAGAGGGGGACCAAGTCGATCC
1 CCGGACCGAGGGTTGTGACAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCC
20728088 TCGGTGTCAC
Statistics
Matches: 286, Mismatches: 81, Indels: 18
0.74 0.21 0.05
Matches are distributed among these distances:
157 30 0.10
158 19 0.07
159 230 0.80
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (159 bp):
CCGGACCGAGGGTTGTGACAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCT
TGCGCATTATGCCTCTTCGACCGACTCAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:20730329 original size:26 final size:26
Alignment explanation
Indices: 20730292--20730344 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20730282 GTTGACTTAG
20730292 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20730318 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
20730344 G
1 G
20730345 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20730527 original size:26 final size:26
Alignment explanation
Indices: 20730491--20730541 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20730481 TGACTTAGGC
20730491 ATACGGAGTTCATCCCCAGTATAAGT
1 ATACGGAGTTCATCCCCAGTATAAGT
* *
20730517 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTATAAG
20730542 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTATAAGT
Found at i:20730861 original size:26 final size:26
Alignment explanation
Indices: 20730832--20730884 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20730822 GTTGGCTTAG
20730832 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
20730858 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20730884 G
1 G
20730885 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20731585 original size:26 final size:26
Alignment explanation
Indices: 20731555--20731633 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
20731545 GTTGGCTTAG
*
20731555 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
20731581 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
20731607 GCATACAGAGTTCATTCCC-AGTCTAA
1 GCATACAGAGTTCA-TCCCTAGTCTAA
20731633 G
1 G
20731634 ATTGAACAGG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 47 0.92
27 4 0.08
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:20732112 original size:26 final size:26
Alignment explanation
Indices: 20732082--20732134 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20732072 GTTGACTTAG
20732082 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
**
20732108 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20732134 G
1 G
20732135 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20732670 original size:26 final size:26
Alignment explanation
Indices: 20732634--20732686 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20732624 GTTGGCTTAG
20732634 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
20732660 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
20732686 G
1 G
20732687 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:20733530 original size:158 final size:158
Alignment explanation
Indices: 20733262--20733806 Score: 460
Period size: 158 Copynumber: 3.4 Consensus size: 158
20733252 CTACCTTTTT
* * * * * *
20733262 GGTCGGCTGAGCGCCCGTACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
1 GGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGT
* * ** * * * * * *
20733327 CTATGATCAGACTGGA-TCATGGGTTGCAG-TAGTAGGATCGGCAGCACGCATGGGGGACCGGGC
66 CTAAGACCAGACCAGACTGA-GGGTT-CTGACAGTAGGACCGACAGCACGCAAGGGGGACCGGGC
* *
20733390 TGATCCCTGGCTTGCGCATTCTGCCTTTCC
129 TGATCCCTGGCTTGCGAATTCTGCCTCTCC
* * * * * * * *
20733420 GGTCGGCTGACCTCCAGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-TCATT
1 GGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCA-G
* * ** * *
20733484 TCTAAGGCCCAG-CCGGACTGAGGGTTCTGGTAGTGGGACCGACAGCACCCAAAGGGGGACCGGG
65 TCTAA-GACCAGACCAGACTGAGGGTTCTGACAGTAGGACCGACAGCACGC-AAGGGGGACCGGG
* * *
20733548 CTGATCCCCT-GCTTGCAAATTATGCCTCTCA
128 CTGAT-CCCTGGCTTGCGAATTCTGCCTCTCC
* * * *
20733579 GGTCGGCTCAGCGCCCGCACGCTTGTCTCGTGGGTTGACTTAGGCATACA-GAGTTCATTCCCAG
1 GGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCCCAG
* * * * * * * *
20733643 TCTAAGATCAGACCAGACTGAGGGTTGTGACAGTAGGATCGATAGCATGCAGGGGGGATCGAGC-
65 TCTAAGACCAGACCAGACTGAGGGTTCTGACAGTAGGACCGACAGCACGCAAGGGGGACCGGGCT
* * *
20733707 CAGT-CCTCGTCTTGCGTATTCTGCCTCTCC
130 GA-TCCCT-GGCTTGCGAATTCTGCCTCTCC
* * *
20733737 GATAGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCACG
1 GGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCA-G
20733801 TCTAAG
65 TCTAAG
20733807 CATAAGGAGT
Statistics
Matches: 307, Mismatches: 66, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 9 0.03
158 168 0.55
159 121 0.39
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGT
CTAAGACCAGACCAGACTGAGGGTTCTGACAGTAGGACCGACAGCACGCAAGGGGGACCGGGCTG
ATCCCTGGCTTGCGAATTCTGCCTCTCC
Found at i:20733667 original size:159 final size:158
Alignment explanation
Indices: 20733292--20733669 Score: 397
Period size: 159 Copynumber: 2.4 Consensus size: 158
20733282 GTTCATTTCA
* * *
20733292 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACTGGA-TCATGGGTTGCAG
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA-GGGTTGCAG
* * * * ** * * *
20733356 TAGTAGGATCGGCAGCACGCATGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTTTCCG
65 TAGTAGGACCGACAGCACCCAAGGGGGACCGGGCTGATCCCTGGCTTGCAAATTATGCCTCTCAG
* * *
20733421 GTCGGCTGACCTCCAGCACGCCCATTTCG
130 GTCGGCTCACCGCCAGCACGCCCATCTCG
* * * * **
20733450 TGGGTTGGCTTAGGCATAGGGAGTTCATT-TCATTTCTAAGGCCCAG-CCGGACTGAGGGTT-CT
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA-GATCAGACCGGACTGAGGGTTGC-
* *
20733512 GGTAGTGGGACCGACAGCACCCAAAGGGGGACCGGGCTGATCCCCT-GCTTGCAAATTATGCCTC
63 AGTAGTAGGACCGACAGCACCC-AAGGGGGACCGGGCTGAT-CCCTGGCTTGCAAATTATGCCTC
* * ***
20733576 TCAGGTCGGCTCAGCGCCCGCACGCTTGTCTCG
126 TCAGGTCGGCTCACCGCCAGCACGCCCATCTCG
* *
20733609 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
20733670 TGACAGTAGG
Statistics
Matches: 175, Mismatches: 36, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.02
158 61 0.35
159 105 0.60
160 6 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGT
AGTAGGACCGACAGCACCCAAGGGGGACCGGGCTGATCCCTGGCTTGCAAATTATGCCTCTCAGG
TCGGCTCACCGCCAGCACGCCCATCTCG
Found at i:20733816 original size:26 final size:26
Alignment explanation
Indices: 20733780--20733832 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20733770 GTTGGCTTAG
20733780 GCATAAGGAGTTCATT-CCACGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
20733806 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
20733832 G
1 G
20733833 ATCATACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:20734012 original size:26 final size:26
Alignment explanation
Indices: 20733976--20734028 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20733966 GTTGGCTTAG
20733976 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
20734002 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
20734028 G
1 G
20734029 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:20734721 original size:26 final size:26
Alignment explanation
Indices: 20734685--20734735 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20734675 TGACTTAGGC
20734685 ATACAGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
* * *
20734711 ATACCGAGTTCATTCTCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
20734736 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:20735055 original size:26 final size:26
Alignment explanation
Indices: 20735025--20735102 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20735015 GTTGGCTTAG
20735025 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
20735051 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
20735077 GCATACAGAGTTCATTCCA-GTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
20735102 G
1 G
20735103 ATCGGACCGA
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 7 0.13
26 45 0.87
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:20735448 original size:182 final size:184
Alignment explanation
Indices: 20735212--20735546 Score: 469
Period size: 184 Copynumber: 1.8 Consensus size: 184
20735202 TCGGTCGGCT
* * ** * * * * *
20735212 TCTCTGATCGGCTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATAC-GAGTTCATCT
1 TCTCTGATCAGCTGAGCCCCCACACGCTCATTTTATGGGTTGACTTAAGCATACGGAGCTCATCC
* * *
20735276 CTAGTCTAAGCATATGGAGTTCATT-CCAATCTAAGATTAGA-CTGGACCGAGGGTTACGACAGC
66 CCAATCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGATC-GGACCGAGGGTTACGACAGC
* **
20735339 AGGATTGGTAGCACGCAGGGGGGATCGAGCCGGCCTTCGGCTTGTGCATTCTACC
130 AGGATCGACAGCACGCAGGGGGGATCGAGCCGGCCTTCGGCTTGTGCATTCTACC
*
20735394 TCTCTGATCAGTTGAGCCCCCACACGCTCATTTTATGGGTTGACTTAAGCATACGGAGCTCATCC
1 TCTCTGATCAGCTGAGCCCCCACACGCTCATTTTATGGGTTGACTTAAGCATACGGAGCTCATCC
* * *
20735459 CCAATCTAAGGATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGTGTTACGACAGCA
66 CCAATCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTACGACAGCA
20735524 GGATCGACAGCACGCAGGGGGGA
131 GGATCGACAGCACGCAGGGGGGA
20735547 CCAGGCTGAT
Statistics
Matches: 131, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
182 46 0.35
183 30 0.23
184 54 0.41
185 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (184 bp):
TCTCTGATCAGCTGAGCCCCCACACGCTCATTTTATGGGTTGACTTAAGCATACGGAGCTCATCC
CCAATCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTACGACAGCA
GGATCGACAGCACGCAGGGGGGATCGAGCCGGCCTTCGGCTTGTGCATTCTACC
Found at i:20735477 original size:26 final size:26
Alignment explanation
Indices: 20735439--20735494 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
20735429 TGGGTTGACT
20735439 TAAGCATACGGAGCTCATCCCCAATC
1 TAAGCATACGGAGCTCATCCCCAATC
* * * * *
20735465 TAAGGATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGCTCATCCCCAATC
20735491 TAAG
1 TAAG
20735495 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGCTCATCCCCAATC
Found at i:20735972 original size:26 final size:26
Alignment explanation
Indices: 20735943--20735995 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20735933 GTTGACCTAG
20735943 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20735969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20735995 G
1 G
20735996 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20736154 original size:184 final size:184
Alignment explanation
Indices: 20735785--20736141 Score: 430
Period size: 184 Copynumber: 1.9 Consensus size: 184
20735775 GTTGACTTAG
* * * ** * *
20735785 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTGTGGTAGTAAGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCAACA
* * * * *
20735850 GCACGTAGGAGGGACTGGGTCGGTCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTGAGCCCC
66 GCACGTAGGAGGGACTGGGTCGATCACAGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACC
* *
20735915 CGCATCCTCGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATCCCCAGTCTAA
131 CGCATCCCCGTTTCATGGGTTGACCTAGGCATACGAAGTTCATCCCCAGTCTAA
* * * * *
20735969 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCAATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCAACA
* * * *
20736034 GCACGTAGGGGGGA-TCGGGTCGATCACAGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
66 GCACGTAGGAGGGACT-GGGTCGATCACAGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCAC
* * * * *
20736098 CCGCA-CGCCCGTTTCATGTGTTGGCTTAGGCATAGGGAGTTCAT
130 CCGCATC-CCCGTTTCATGGGTTGACCTAGGCATACGAAGTTCAT
20736142 TCTATGTCTA
Statistics
Matches: 143, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
183 2 0.01
184 141 0.99
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCAACA
GCACGTAGGAGGGACTGGGTCGATCACAGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACC
CGCATCCCCGTTTCATGGGTTGACCTAGGCATACGAAGTTCATCCCCAGTCTAA
Found at i:20736287 original size:501 final size:501
Alignment explanation
Indices: 20735384--20736312 Score: 1210
Period size: 501 Copynumber: 1.9 Consensus size: 501
20735374 TTCGGCTTGT
* * * *
20735384 GCATTCTACCTCTCTGATCAGTTGAGCCCCCACACGCTCATTTTATGGGTTGACTTAAGCATACG
1 GCATTCTACCTCTCCGATCAGCTGAGCCCCCACACGCTCATTTCATGGGTTGACCTAAGCATACG
* * * * *
20735449 GAGCTCATCCCCAATCTAAGGATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGTGT
66 AAGCTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* * *
20735514 TACGACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCTGATCCCCAGCTTATGCATTCTACCT
131 TACGACAGCAGGATCAACAGCACGCAGGGGGGACCAGGCTGATCCACAGCTTACGCATTCTACCT
*
20735579 CTCCAACCGGCTGAGCGCCCGCACGCCCGTTTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCC
196 CTCCAACCGGCTGAGCACCCGCACGCCCGTTTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCC
* **
20735644 ATGTCTAAGCCCAAGCAGGACCGAGGGTTATGGCAGCAGGACTGGCAGCATACAGAGGGGGATCG
261 ATGTCTAAGCCCAAGCAGGACCGAGGGTTATGACAGCAGGACCAGCAGCATACAGAGGGGGATCG
* * * * * * ** * *
20735709 GGTCGATCCCTGACTTGTGCATTATGCCTTTCCGGTTGGCTCAGTGCTCGAACGATCGTTTCATG
326 GGTCGATCCCAGACTTGCGCATTATACCTTTCCGATCGACTCAGCACCCGAACGATCATTTCATG
20735774 GGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAGATCAGACTAGACCGAGGGTTGTGGTA
391 GGTTGACTTAGGCATACAGAGTTCATTCCAT-GTCTAAGATCAGACTAGACCGAGGGTTGTGGTA
20735838 GTAAGATCGACAGCACGTAGGAGGGACTGGGTCGGTCCCCGGCTTAC
455 GTAAGATCGACAGCACGTAGGAGGGACTGGGTCGGTCCCCGGCTTAC
* * * * *
20735885 GCATTCTACCTCTCCGATCGGCTGAGCCCCCGCATC-CTCGTTTCGTGGGTTGACCTAGGCATAC
1 GCATTCTACCTCTCCGATCAGCTGAGCCCCCACA-CGCTCATTTCATGGGTTGACCTAAGCATAC
* * *
20735949 GAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
65 GAAGCTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* * * * * * *
20736014 TTGCGACAGCAGGATCAATAGCACGTAGGGGGGATC-GGGTCGAT-CACAGGCTTGCGCATTCTG
130 TTACGACAGCAGGATCAACAGCACGCAGGGGGGACCAGGCT-GATCCACA-GCTTACGCATTCTA
**
20736077 CCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCAT-GTGTTGGCTTAGGCATAGGGAGTTCA
193 CCTCTCCAACCGGCTGAGCACCCGCACGCCCGTTTCATGGT-TTGGCTTAGGCATAGGGAGTTCA
* * * * * *
20736141 TTCTATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGACTA-CGGGACCAGCAGCATACGGAGGGG
257 TTCCATGTCTAAGCCCAAGCAGGACCGAGGGTTATGAC-AGCAGGACCAGCAGCATACAGAGGGG
* * * * *
20736205 GATCGGG-CTGATCTTCAG-CTTGCGCATTCTACCTTTCCGATCGACTGAGCACCCGTACGCTCA
321 GATCGGGTC-GATC-CCAGACTTGCGCATTATACCTTTCCGATCGACTCAGCACCCGAACGATCA
* *
20736268 TTTCGTGGGTT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
384 TTTCATGGGTTGA-CTTAGGCATACAGAGTTCATTCCATGTCTAAG
20736313 GATATGGAGT
Statistics
Matches: 363, Mismatches: 56, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
500 10 0.03
501 348 0.96
502 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (501 bp):
GCATTCTACCTCTCCGATCAGCTGAGCCCCCACACGCTCATTTCATGGGTTGACCTAAGCATACG
AAGCTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
TACGACAGCAGGATCAACAGCACGCAGGGGGGACCAGGCTGATCCACAGCTTACGCATTCTACCT
CTCCAACCGGCTGAGCACCCGCACGCCCGTTTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCC
ATGTCTAAGCCCAAGCAGGACCGAGGGTTATGACAGCAGGACCAGCAGCATACAGAGGGGGATCG
GGTCGATCCCAGACTTGCGCATTATACCTTTCCGATCGACTCAGCACCCGAACGATCATTTCATG
GGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCAGACTAGACCGAGGGTTGTGGTAG
TAAGATCGACAGCACGTAGGAGGGACTGGGTCGGTCCCCGGCTTAC
Found at i:20736902 original size:158 final size:158
Alignment explanation
Indices: 20736636--20737178 Score: 474
Period size: 158 Copynumber: 3.4 Consensus size: 158
20736626 GCCTTTTTGG
* * * * * * *
20736636 TCGGCTGAACGCCCGTACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCT
* * ** * * * * *
20736701 ATGATCAGACTGGA-TCATGGGTTG-CAGTAGTAGGATCGGCAGCACGCATGGGGGACCGGGCTG
66 AAGACCAGACCAGACTGA-GGGTTGTGA-TAGTAGGACCGACAGCACGCAAGGGGGACCGGGCTG
*
20736764 ATCCCTGGCTTGCGCATTCTGCCTTTCCGA
129 ATCCCTGGCTTGCGCATTCTGCCTCTCCGA
* * * * * * * *
20736794 TCGGCTGACCTCCAGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-TCATTTC
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCA-GTC
* * * * * *
20736858 TAAGGCCCAG-CCGGACTGAGGGTTTTGGTAGTGGGACCGACAGCACCCAGAGGGGGACCGGGCT
65 TAA-GACCAGACCAGACTGAGGGTTGTGATAGTAGGACCGACAGCACGCA-AGGGGGACCGGGCT
* ** * * *
20736922 GATCCCCGGCTTGCATATTATGCCTCTCAGG
128 GATCCCTGGCTTGCGCATTCTGCCTCTCCGA
* * * *
20736953 TCGGCTCAGCGCCCGCACGCTTGTCTCGTGGGTTGACTTAGGCATACA-GAGTTCATTCCCAGTC
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCCCAGTC
* * * * * * *
20737017 TAAGATCAGACCAGACTGAGGGTTGTGATAGTAGGATCGATAGCATGCAGGGGGGATCGGGC-CA
65 TAAGACCAGACCAGACTGAGGGTTGTGATAGTAGGACCGACAGCACGCAAGGGGGACCGGGCTGA
*
20737081 GTCCTCAT--CTTGCGCATTCAGCCTCTCCGA
130 -TCC-C-TGGCTTGCGCATTCTGCCTCTCCGA
* *
20737111 TAGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCACGTC
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCA-GTC
20737175 TAAG
65 TAAG
20737179 CATAAGAAGT
Statistics
Matches: 303, Mismatches: 69, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.02
158 168 0.55
159 126 0.42
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCT
AAGACCAGACCAGACTGAGGGTTGTGATAGTAGGACCGACAGCACGCAAGGGGGACCGGGCTGAT
CCCTGGCTTGCGCATTCTGCCTCTCCGA
Found at i:20737189 original size:26 final size:26
Alignment explanation
Indices: 20737152--20737204 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20737142 GTTGGCTTAG
*
20737152 GCATAAGGAGTTCATT-CCACGTCTAA
1 GCATAAGAAGTTCATTCCCA-GTCTAA
20737178 GCATAAGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
20737204 G
1 G
20737205 ATCATACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:20737384 original size:26 final size:26
Alignment explanation
Indices: 20737348--20737400 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20737338 GTTGGCTTAG
20737348 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
20737374 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
20737400 G
1 G
20737401 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Done.