Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 106 of 125
Found at i:20738379 original size:245 final size:245
Alignment explanation
Indices: 20737949--20738429 Score: 944
Period size: 245 Copynumber: 2.0 Consensus size: 245
20737939 TGGCAAAAAT
20737949 ATGAAGATGTGCTTGAAGCCACCTACCACCCGTTCATCCCCAATCTATACATACGGAGTTTATTC
1 ATGAAGATGTGCTTGAAGCCACCTACCACCCGTTCATCCCCAATCTATACATACGGAGTTTATTC
20738014 CCATTCTAAGATCAAATCGGATCGAGGGTTGCGACAGTAGGATCGGCTGCACGAAAGGGGGATCA
66 CCATTCTAAGATCAAATCGGATCGAGGGTTGCGACAGTAGGATCGGCTGCACGAAAGGGGGATCA
*
20738079 AGTCGATCTCCGGCTTACACATTCTACCTCTCCGATTGGCTGAGCACCCGCACACCCATTTCATG
131 AGTCGATCTCCAGCTTACACATTCTACCTCTCCGATTGGCTGAGCACCCGCACACCCATTTCATG
20738144 GGTTGGCTTAGGTATAAGGAGTTCATTCCATGTCTAAGGCCGTTCATTTC
196 GGTTGGCTTAGGTATAAGGAGTTCATTCCATGTCTAAGGCCGTTCATTTC
20738194 ATGAAGATGTGCTTGAAGCCACCTACCACCCGTTCATCCCCAATCTATACATACGGAGTTTATTC
1 ATGAAGATGTGCTTGAAGCCACCTACCACCCGTTCATCCCCAATCTATACATACGGAGTTTATTC
20738259 CCATTCTAAGATCAAATCGGATCGAGGGTTGCGACAGTAGGATCGGCTGCACGAAAGGGGGATCA
66 CCATTCTAAGATCAAATCGGATCGAGGGTTGCGACAGTAGGATCGGCTGCACGAAAGGGGGATCA
20738324 AGTCGATCTCCAGCTTACACATTCTACCTCTCCGATTGGCTGAGCACCCGCACACCCATTTCATG
131 AGTCGATCTCCAGCTTACACATTCTACCTCTCCGATTGGCTGAGCACCCGCACACCCATTTCATG
*
20738389 GGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGGCC
196 GGTTGGCTTAGGTATAAGGAGTTCATTCCATGTCTAAGGCC
20738430 CAGTCAAACC
Statistics
Matches: 234, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
245 234 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (245 bp):
ATGAAGATGTGCTTGAAGCCACCTACCACCCGTTCATCCCCAATCTATACATACGGAGTTTATTC
CCATTCTAAGATCAAATCGGATCGAGGGTTGCGACAGTAGGATCGGCTGCACGAAAGGGGGATCA
AGTCGATCTCCAGCTTACACATTCTACCTCTCCGATTGGCTGAGCACCCGCACACCCATTTCATG
GGTTGGCTTAGGTATAAGGAGTTCATTCCATGTCTAAGGCCGTTCATTTC
Found at i:20738599 original size:158 final size:157
Alignment explanation
Indices: 20738281--20738902 Score: 497
Period size: 158 Copynumber: 3.9 Consensus size: 157
20738271 CAAATCGGAT
* * ** ** * * **
20738281 CGAGGGTTGCGACAGTAGGATCGGCTGCACGAAAGGGGGATCAAGTCGATCTCCAGCTTACACAT
1 CGAGGGTTGTGACAGTAGGATCGACCACAC-AAAGGGGGATCGGGTCGATCCCCGGCTTATGCAT
* *
20738346 TCTACCTCTCCGATTGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGTATAGGGAGT
65 TCTACCTCTCCGACTGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
* **
20738411 TCATTCCATGTCTAAGGCCCAG-TCAAAC
130 TCATTCCATGTCTAAGCCCCAGCT-GGAC
20738439 CGAGGGTTGAT-ACAGTAGGATCGACCACACACAAGGGGGATCGGGTCGATCCCCGGCTTATGCA
1 CGAGGGTTG-TGACAGTAGGATCGACCACACA-AAGGGGGATCGGGTCGATCCCCGGCTTATGCA
* * * *
20738503 TTCTGCCTTTCCGGCTGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGTATAGGGAG
64 TTCTACCTCTCCGACTGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAG
*
20738568 TTTATTCCATGTCTAAGCCCCAGCTGGAC
129 TTCATTCCATGTCTAAGCCCCAGCTGGAC
* * * * * * *
20738597 CGAGGGTTGTGGCAG-CGAGACCG-GCAGCATGCAAAGGGGGATCGGGTCGATCCTCGACTTGTG
1 CGAGGGTTGTGACAGTAG-GATCGACCA-CA--CAAAGGGGGATCGGGTCGATCCCCGGCTTATG
* * * * * * * *** ** *
20738660 CATTATGCCTCTCCGACCGGCTCAGCGCCCGTACGCTTGTTTTGTGGGTTGGCTTAGGCATAGAG
62 CATTCTACCTCTCCGACTGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGG
** * * * *
20738725 AGTTCATTCCCA-GTCTAAGATCGAACCGGAT
127 AGTTCATT-CCATGTCTAAGCCCCAGCTGGAC
* * * * * * * *
20738756 CAAGAGTTGTGATAGTAGGATCGACAACATGCAAGGGGGGACCGGGTCGGTCCCC--CCT-TGCA
1 CGAGGGTTGTGACAGTAGGATCGACCACA--CAAAGGGGGATCGGGTCGATCCCCGGCTTATGCA
* * * * * * * *
20738818 TGTTCTACCTTTCC-AGCTGACTGAACGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATAGG
64 --TTCTACCTCTCCGA-CTGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGG
20738882 GAGTTCATTCCATGTCTAAGC
126 GAGTTCATTCCATGTCTAAGC
20738903 ATACGGAGTT
Statistics
Matches: 375, Mismatches: 74, Indels: 30
0.78 0.15 0.06
Matches are distributed among these distances:
156 4 0.01
157 11 0.03
158 216 0.58
159 137 0.37
160 7 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
CGAGGGTTGTGACAGTAGGATCGACCACACAAAGGGGGATCGGGTCGATCCCCGGCTTATGCATT
CTACCTCTCCGACTGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTT
CATTCCATGTCTAAGCCCCAGCTGGAC
Found at i:20738926 original size:26 final size:26
Alignment explanation
Indices: 20738875--20738927 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20738865 GTTGGCTTAG
* *
20738875 GCATAGGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
20738901 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
20738927 G
1 G
20738928 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:20739457 original size:26 final size:26
Alignment explanation
Indices: 20739427--20739479 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20739417 GTTGGCTGAG
* *
20739427 GCATAGGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
20739453 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
20739479 G
1 G
20739480 AGTTTGAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:20740062 original size:12 final size:12
Alignment explanation
Indices: 20740045--20740072 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
20740035 GATAGAAATA
20740045 TGAAGATGTGCT
1 TGAAGATGTGCT
20740057 TGAAGATGTGCT
1 TGAAGATGTGCT
20740069 TGAA
1 TGAA
20740073 CCCACCTACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.07, G:0.32, T:0.32
Consensus pattern (12 bp):
TGAAGATGTGCT
Found at i:20740409 original size:159 final size:159
Alignment explanation
Indices: 20740177--20740585 Score: 445
Period size: 159 Copynumber: 2.6 Consensus size: 159
20740167 TAATCTCTAG
* * * *
20740177 CTTGCGCATTGTGCCTCTCCGA-CTGGCTGAGCGTCCGTACGCCCGTTTCATGGGTTGGCTTAGG
1 CTTGCGCATTATGCCTTTCCGATC-GGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGG
* * * *
20740241 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGCTGTGGTAGCGGGATCGACA
65 CATACGGAGTTCATTCCATGTCTAAGCACCAGACTGGACCGAGGGCTGCGGTAGCAGGATCGACA
*
20740305 GCATGCAGAGGGGGACCAGGCT-GATCCCCGA
130 GCACGCAGAGGGGGA-CAGGCTAG-TCCCCGA
* * * * *
20740336 CTTGCGCATTATGCCTTTCCGATCGGCTTAGCACCCGCACGCTCGTTTCATGGGCTGACTTAGGC
1 CTTGCGCATTATGCCTTTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * *
20740401 ATACGGAGTTCATTCC-TAGTCTAAG-ATCAGATTGGACCGAGGGTTGCGGTAGTAGGATCGATA
66 ATACGGAGTTCATTCCAT-GTCTAAGCACCAGACTGGACCGAGGGCTGCGGTAGCAGGATCGACA
* * *
20740464 GCACGCAGGGGGGGACAGGGTAGTCCTCGA
130 GCACGCAGAGGGGGACAGGCTAGTCCCCGA
** * * * * * *
20740494 CTTATGTATTCTACCTCTTCAG-TCAGCTGAGCGCCCGTACGCTCGTTAT-GTGGGTTGGCTTAG
1 CTTGCGCATTATGCCT-TTCCGATCGGCTGAGCGCCCGTACGCTCGTT-TCATGGGTTGGCTTAG
20740557 GCATACGGAGTTCATTCCATGTCTAAGCA
64 GCATACGGAGTTCATTCCATGTCTAAGCA
20740586 TACAGAGTTC
Statistics
Matches: 207, Mismatches: 35, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
158 83 0.40
159 123 0.59
160 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
CTTGCGCATTATGCCTTTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCACCAGACTGGACCGAGGGCTGCGGTAGCAGGATCGACAG
CACGCAGAGGGGGACAGGCTAGTCCCCGA
Found at i:20740586 original size:26 final size:26
Alignment explanation
Indices: 20740557--20740609 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20740547 GTTGGCTTAG
*
20740557 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20740583 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20740609 G
1 G
20740610 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20740784 original size:26 final size:26
Alignment explanation
Indices: 20740754--20740806 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20740744 GTTGACTTAG
*
20740754 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20740780 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20740806 G
1 G
20740807 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20741134 original size:151 final size:151
Alignment explanation
Indices: 20740925--20741336 Score: 355
Period size: 159 Copynumber: 2.7 Consensus size: 151
20740915 GCCTATTTCG
* * * ** * ** * * *
20740925 TGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGTCGGACAAAGGGTTGTGG
1 TGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCGAACCAGACTAAGGGTTGCGG
* * * *
20740989 CAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGCCAATTACGTATTATGCCTCTCTGGCCAACA
65 CAGCAGGATCGGTAGCACGCAGAGGGGGACCGGGCCAATTACGCATTATGCCTCTCCGGCCAACA
* * *
20741054 CAATGCCCGAACGCTCGTTCCA
130 CAACGCCCGAACACTCATTCCA
* *
20741076 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTATGATC-AGACCAGACTGAGGGTTGCGG
1 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTAAGGGTTGCGG
** * * * *
20741140 CAGCAGGATCGACAGCACGCAG-GGGGGAACTGGGCTGGTCCCCGACTTATGCATTCTGCCTCTC
65 CAGCAGGATCGGTAGCACGCAGAGGGGG-AC----C-GG--GCC-AATTACGCATTATGCCTCTC
** ** * * * *
20741204 CGGCCGGCTGAGCGCTCGTACACTCATTTCA
121 CGGCCAACACAACGCCCGAACACTCATTCCA
* * *
20741235 TGGGTTGCCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACTAAGGGTTGCGGC
1 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACTAAGGGTTGCGGC
*
20741300 AGCAGGATCGGTAGCACGTA-AGGGGGACCGGGCCAAT
66 AGCAGGATCGGTAGCACGCAGAGGGGGACCGGGCCAAT
20741337 CCCCGGTTGA
Statistics
Matches: 205, Mismatches: 43, Indels: 27
0.75 0.16 0.10
Matches are distributed among these distances:
150 8 0.04
151 68 0.33
152 3 0.01
153 2 0.01
154 1 0.00
155 1 0.00
156 2 0.01
158 4 0.02
159 115 0.56
160 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.22
Consensus pattern (151 bp):
TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACTAAGGGTTGCGGC
AGCAGGATCGGTAGCACGCAGAGGGGGACCGGGCCAATTACGCATTATGCCTCTCCGGCCAACAC
AACGCCCGAACACTCATTCCA
Found at i:20741578 original size:26 final size:26
Alignment explanation
Indices: 20741539--20741590 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20741529 GTTGGCTTAG
20741539 GCATACAGACTTCATT-CCATGTCTAA
1 GCATACAGACTTCATTCCCA-GTCTAA
*
20741565 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
20741591 AGCTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:20743171 original size:26 final size:26
Alignment explanation
Indices: 20743131--20743183 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20743121 GTTGGCTTAG
20743131 GCATACGAAGGTCATTC-CATGTCTAA
1 GCATACGAAGGTCATTCTCA-GTCTAA
* *
20743157 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGGTCATTCTCAGTCTAA
20743183 G
1 G
20743184 ATTAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGGTCATTCTCAGTCTAA
Found at i:20743377 original size:26 final size:26
Alignment explanation
Indices: 20743341--20743391 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20743331 TTGACTTAGA
20743341 CATACGAAGTTCATCCCTAGTCTAAC
1 CATACGAAGTTCATCCCTAGTCTAAC
* * *
20743367 CATACGGAGTTCATTCGTAGTCTAA
1 CATACGAAGTTCATCCCTAGTCTAA
20743392 GATCAGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATCCCTAGTCTAAC
Found at i:20744442 original size:26 final size:26
Alignment explanation
Indices: 20744405--20744457 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20744395 GTTGACTTAG
*
20744405 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGAAGTTCATCCCCGGTCTAA
*
20744431 GCATACGAAGTTCATTCCCGGTCTAA
1 GCATACGAAGTTCATCCCCGGTCTAA
20744457 G
1 G
20744458 ATCGGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCGGTCTAA
Found at i:20744816 original size:159 final size:157
Alignment explanation
Indices: 20744428--20744816 Score: 359
Period size: 159 Copynumber: 2.5 Consensus size: 157
20744418 ATCCCCGGTC
* * * *
20744428 TAAGCATACGAAGTTCATTCCCGGTCTAAGATCGGGCCAGACCGAGGGTTGCGACAGTAGGATCG
1 TAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCG
* * * * * * * * *
20744493 GTAGCATAAAAGGGGGATCGGATCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGC
65 ATAGCACAAAAGAGGGACCGGATCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACTCAAC
* * * *
20744558 GCTCGCACGCCCATTTTGTAGGTTGGCT
130 GCCCGAACGCCCATTTCGTAGGTTGACT
* * * ** * * * ** *
20744586 TAGGCATAGGGAGTTCATTCCATGTCTAAG-GCCCAGCCAAACCGAGGGTTGTGGCAGGGGGACC
1 TAAGCATACGGAGTTCATTCCA-GTCTAAGATCGGA-CCAGACCGAGGGTTGCGACAGCAGGATC
* * * * * * *
20744650 GACAGCACACAGAGAGGGACCGG-GCTGATCCCCAGCTTTCGCATTATGCCTTTTCGACCGGCTC
64 GATAGCACA-AAAGAGGGACCGGATC-GATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACTC
* *
20744714 AACGCCCGAACGCTCATTTCGTGGGTTGACT
127 AACGCCCGAACGCCCATTTCGTAGGTTGACT
* *
20744745 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCG
1 TAAGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCG
20744810 ATAGCAC
65 ATAGCAC
20744817 GTAGGGGGGA
Statistics
Matches: 175, Mismatches: 50, Indels: 11
0.74 0.21 0.05
Matches are distributed among these distances:
157 3 0.02
158 52 0.30
159 117 0.67
160 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (157 bp):
TAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGA
TAGCACAAAAGAGGGACCGGATCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACTCAACG
CCCGAACGCCCATTTCGTAGGTTGACT
Found at i:20745448 original size:26 final size:26
Alignment explanation
Indices: 20745419--20745471 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20745409 GATGGCTTAG
* *
20745419 GCATGCGGATTTCATCTCC-AGTCTAA
1 GCATACGGAGTTCAT-TCCTAGTCTAA
20745445 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20745471 G
1 G
20745472 TCAGACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20745955 original size:26 final size:26
Alignment explanation
Indices: 20745921--20745971 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20745911 TGGCTTAGGT
20745921 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
*
20745947 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
20745972 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:20746159 original size:26 final size:26
Alignment explanation
Indices: 20746129--20746179 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20746119 TTGACTTAGG
20746129 CATACGAAGTTCA-TCCTCAGTCTAAA
1 CATACGAAGTTCATTCC-CAGTCTAAA
*
20746155 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
20746180 GATCGGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:20746678 original size:26 final size:26
Alignment explanation
Indices: 20746629--20746681 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20746619 GTTAGCTTAG
*
20746629 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20746655 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20746681 G
1 G
20746682 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20746781 original size:13 final size:13
Alignment explanation
Indices: 20746763--20746788 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20746753 TCATATTTTG
20746763 CCTCTCCAGTCGA
1 CCTCTCCAGTCGA
20746776 CCTCTCCAGTCGA
1 CCTCTCCAGTCGA
20746789 TTGAGTGCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.46, G:0.15, T:0.23
Consensus pattern (13 bp):
CCTCTCCAGTCGA
Found at i:20746852 original size:26 final size:26
Alignment explanation
Indices: 20746823--20746878 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
20746813 TGGGTTGACT
20746823 TAAGCACACGAAGTTCATCCCCAGTC
1 TAAGCACACGAAGTTCATCCCCAGTC
* * * *
20746849 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCACACGAAGTTCATCCCCAGTC
20746875 TAAG
1 TAAG
20746879 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCACACGAAGTTCATCCCCAGTC
Found at i:20747089 original size:698 final size:700
Alignment explanation
Indices: 20745382--20747184 Score: 1822
Period size: 710 Copynumber: 2.6 Consensus size: 700
20745372 TTTCGATCGG
* * * * * * ** * * *
20745382 TTGAGCACCCGCACGTTCGTTTCGTGGGATGGCTTAGGCATGCGGATTTCATCTCCAGTCTAAGC
1 TTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAAGCACACGAAGTTCATCCCCAGTCTAAGC
* * * * **
20745447 ATACGGAGTTCATTCCTAGTCTAAG-TCAGACCAAACCGAGGGTTGCGACAGTAGGATCGATAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGTAGGATCGATAGC
* * * * * * * * *
20745511 ACGTAGGGGGACCAGGTTGATCCCTGACTTGTGCATTCTGCCTCT-CTGATCGGCTTAGCGCCCC
131 AC-AAGGGGGATCAGGTCGATCCCTAACTTGCGCATTCTACCTCTCCAG-TCGGCTGAGC-ACCC
* *
20745575 GTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGA
193 GTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGG
* ** * * * * *
20745640 CCGAGGGTTGCAGCAGCGGGACTGGCAGCAGGCAGAGAGGGACCGAGTCGATCCCCAGCTTACGC
258 CCAAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACAGA-TAGATCCCCAGCTTACGC
* * * * * *
20745705 ATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTACGCATATGGA
322 ATTATGCCTCTCTGGATGGCTGAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
* * * * * * *
20745770 GTTCATTCCCAATCTAAGATCGGATCAGATCGAGCATTATGACAGTAGGATCAACAGCATGCAGG
387 GTTCATTCCCAATCTAAGATCGAACCAAATCGAGCATTACGACAGCAGGAACAACAGCAAGCAGG
* * * * * *
20745835 GGGGATCGGGCCGATCCCCGGCTTGTGCGTTCTACCTTTCTGGTCGGTTGAGCGCCCGCACGTTC
452 GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGATTGAGCGCCCGCACGTTC
* *
20745900 GTTTCATGGGTTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
517 GTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
* * * *
20745965 GTCTAAGATCGGATCAGATCGAGGGTTACGGCAGTAGGACCAGCAGTAGGATCGGCAGCACGTAG
582 GTCTAAGATCAGACCAGATCGAGGGTTAC-GC---AGGA-CAGCA--AGGATCGACAGCACGCAG
* * * * * * * * *
20746030 GGGGGACTAGGCCAATCCCTGACTTGCGCATTCTACCTCTCCGGTTGGCTTTTTCGACCGG
640 GGGGGACGAGGCCAATCCCTGACTTGCACATTCTACCTCTCCAGTCGACCTCTCCGACCGA
* * * * *
20746091 TTGAGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCTCAGTCTAAAC
1 TTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAAGCACACGAAGTTCATCCCCAGTCTAAGC
* * *
20746156 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGACAGT
66 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGTAGGATCGATAGC
* * * * * * ** *
20746221 ACGTAACGGGGATCGGGTCGATCCC-AAGCTTACGCATTCTACCTCTCCGGCCGGTTGAGTGCCT
131 AC--AAGGGGGATCAGGTCGATCCCTAA-CTTGCGCATTCTACCTCTCCAGTCGGCTGAGCACCC
** *
20746285 GTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGTATGTCTAAGCCCCAGTC-GG
193 GTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGG
* * * * *
20746349 ATCGAA-GGTTGTGGTAGCGGGATCGGCAGCACGTAGAGGGGGACTAGATTGATCCCCAGCTTAC
258 --CCAAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGAC-AGATAGATCCCCAGCTTAC
* * *
20746413 GTATTATGCCTCTCTGGCTGGCTGAGCACCCGAACGCTCATTTCGT-GGTTAGACTTAGGCATAC
320 GCATTATGCCTCTCTGGATGGCTGAGCGCCCGAACGCTCATTTCGTGGGTT-GACTTAGGCATAC
* * ** * * *
20746477 GGAGTTCATTCCCAGTCTAAGATTGAACCAAA-CTGAGGGTTACGATAGCAGGAACGATAGCAAG
384 GGAGTTCATTCCCAATCTAAGATCGAACCAAATC-GAGCATTACGACAGCAGGAACAACAGCAAG
* * * *
20746541 CAGGGGGGATAC-GGCCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGGCCTATTGAGCGCCCGCA
448 CAGGGGGGAT-CGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGATTGAGCGCCCGCA
* * *
20746605 TGCTT-GTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACGGAGTTCA
512 CG-TTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
*
20746669 TTCCCAGTCTAAGATCAGACCAGATCGAGGGTT-C-C-GG-TAGC-AGGATCGACAGCACGCAGG
576 TTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGCAGGACAGCAAGGATCGACAGCACGCAGG
* *** * * * * * *
20746729 GTGGACCGA-GTTGATCCCTGGCTTTCATATTTTGCCTCTCCAGTCGACCTCTCC-AGTCGA
641 GGGGA-CGAGGCCAATCCCTGACTTGCACATTCTACCTCTCCAGTCGACCTCTCCGA-CCGA
** * * *
20746789 TTGAGTGCCTGCACGCTCGTTTTATGGGTTGACTTAAGCACACGAAGTTCATCCCCAGTCTAAGC
1 TTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAAGCACACGAAGTTCATCCCCAGTCTAAGC
* ** * *
20746854 ATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTACGGTAGTAGGATCGGTAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGTAGGATCGATAGC
***
20746919 ACACAGGTGGGATCAAACCGATCCCTAACTTGCGCATTCTACCTCTCCAGTCGGCTGAGCACCCG
131 ACA-AGG-GGGATCAGGTCGATCCCTAACTTGCGCATTCTACCTCTCCAGTCGGCTGAGCACCCG
* ** * * * *
20746984 CACGCTTGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTGATTCCATGTCTAAACCCCAGCCAGGC
194 TACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGGC
* * * * ** ** *
20747049 CAAGGGTTGTGGCAGCTGGACCGACAGCACGCAAAGGGGGACCGGGCAGATCCCTGGCTTGCGCA
259 CAAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGA-CAGATAGATCCCCAGCTTACGCA
* * * * * *
20747114 TTTTGCCTCT-TCGATCGGCTGAGCGCCTGAATGCTCATTTCGTGGGTTGGCTTTGGCATACGGA
323 TTATGCCTCTCTGGAT-GGCTGAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
20747178 GTTCATT
387 GTTCATT
20747185 TCATGTCTAG
Statistics
Matches: 894, Mismatches: 179, Indels: 53
0.79 0.16 0.05
Matches are distributed among these distances:
696 1 0.00
697 9 0.01
698 360 0.40
699 11 0.01
701 3 0.00
703 2 0.00
707 1 0.00
709 84 0.09
710 377 0.42
711 44 0.05
712 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (700 bp):
TTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAAGCACACGAAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGTAGGATCGATAGC
ACAAGGGGGATCAGGTCGATCCCTAACTTGCGCATTCTACCTCTCCAGTCGGCTGAGCACCCGTA
CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGGCCA
AGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACAGATAGATCCCCAGCTTACGCATTA
TGCCTCTCTGGATGGCTGAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAATCTAAGATCGAACCAAATCGAGCATTACGACAGCAGGAACAACAGCAAGCAGGGGGG
ATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGATTGAGCGCCCGCACGTTCGTTT
CATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAGATCGAGGGTTACGCAGGACAGCAAGGATCGACAGCACGCAGGGGGGACGAGG
CCAATCCCTGACTTGCACATTCTACCTCTCCAGTCGACCTCTCCGACCGA
Found at i:20747204 original size:26 final size:26
Alignment explanation
Indices: 20747168--20747236 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
20747158 GGTTGGCTTT
*
20747168 GGCATACGGAGTTCATTTCATGTCTA
1 GGCATACGGAGTTCATTTCATGTCCA
20747194 GGCATACGGAGTTCATTTCATGTCCA
1 GGCATACGGAGTTCATTTCATGTCCA
*
20747220 AGCATACGGAGTTCATT
1 GGCATACGGAGTTCATT
20747237 CCCAATCTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (26 bp):
GGCATACGGAGTTCATTTCATGTCCA
Found at i:20747791 original size:26 final size:26
Alignment explanation
Indices: 20747754--20747806 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20747744 GTTGACTTAG
*
20747754 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
20747780 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
20747806 G
1 G
20747807 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:20748284 original size:26 final size:26
Alignment explanation
Indices: 20748255--20748307 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20748245 GTTGGCTTAG
20748255 GCATACGGAGTTAATTCC-ATGTCTAA
1 GCATACGGAGTTAATTCCTA-GTCTAA
*
20748281 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCTAGTCTAA
20748307 G
1 G
20748308 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCTAGTCTAA
Found at i:20748480 original size:26 final size:26
Alignment explanation
Indices: 20748451--20748503 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20748441 GTTGACTTAG
*
20748451 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20748477 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20748503 G
1 G
20748504 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20748965 original size:381 final size:378
Alignment explanation
Indices: 20748103--20749036 Score: 1088
Period size: 381 Copynumber: 2.4 Consensus size: 378
20748093 TAGGCACACA
* * * *
20748103 GAGTTCATTTCTAGTCTAAGATCACACCAGACTGAGGGTTACAGCAGCAGGATCA-ATGGCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCACA--GCACGC
* * * * *
20748167 AGATGGGGACCGTGCTGGTCCCCAGCTTGCGCATTCTGCCTCTCTGACCGACTGAGCACCCGCAT
64 -GAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCAC
* * * *
20748232 GCTCGTTTCAAAGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATACGGAGTTCATT
128 GTTCGTTTC-ATGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGCATACGGAGTTCATT
* * * * ** **
20748297 CCTAGTCTAAGATCAGACTGAACTGAAGGTTACGGTAGCAGGACCAGCAGTAGGATAGGTAGCAC
192 CCCAATCTAAGATCAGACCGAACCGAAGGTTACGACAGCAGGACCAGCAGTAGGATAGACAGCAC
* * * * * * ** * * *
20748362 ACAGGAGGGATCGGGTCGATCCTCGATTTACGTATTCTACCTCTCCGATCGGCTGAGCGTCCGTA
257 ACAGGAGGGACCAGGCCAATCCCCGACTTACACATTCTACCTCTCCGACCGACTGAGCGCCCGTA
*
20748427 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
322 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
* ** * * *
20748484 AAGTTCATTCCCAGTCTAAGATC-GAACCAGACCAAGGGTTGCGACAGCAGGATCAGCAGCATGC
1 GAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTACGGCAGCAGGATCA-CAGCACGC
* * * * *
20748548 -AGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTTTCTGGCCGACTGAGTGCCCGCAC
64 GA-GGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCAC
* *
20748612 GTTCGTTTCGCTGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCAAAGCATACGGAGTTCATT
128 GTTCGTTTC-ATGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGCATACGGAGTTCATT
* * * * *
20748677 CCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAGCATGACC-GATAGTAGGATCGACAGCA
192 CCCAATCTAAGATCAGACCGAACCGAAGGTTACGACAGCAGGACCAG-CAGTAGGATAGACAGCA
* * * *
20748741 CGCAGGAGGGGACCAGGCCAATCCCCGACTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCG
256 CACAGGA-GGGACCAGGCCAATCCCCGACTTACACATTCTACCTCTCCGACCGACTGAGCGCCCG
* * *
20748806 TACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTCAGCATACG
320 TACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
* * * *
20748865 GAGTTCATTCCCAGTTTAAGATCAGACCGGACTGAGGGTTACGGTAACAGGATCGACAGCACGCG
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATC-ACAGCACGCG
* * * *
20748930 AGGGGGACCGGGCTGATCCCC-GACTTGCACATTCTGCCCCTCCGACCGACTGAGCGCCCGTAC-
65 AGGGGGACCGGGCTGATCCCCAG-CTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACG
* *
20748993 TCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
129 TTC-GTTTCAT-GGTTGGCTTAGGCATACGGAGTTCATTCCATG
20749037 CCTAAGCCCC
Statistics
Matches: 459, Mismatches: 82, Indels: 24
0.81 0.15 0.04
Matches are distributed among these distances:
379 2 0.00
380 169 0.37
381 284 0.62
382 3 0.01
383 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (378 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCACAGCACGCGA
GGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGTT
CGTTTCATGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGCATACGGAGTTCATTCCCA
ATCTAAGATCAGACCGAACCGAAGGTTACGACAGCAGGACCAGCAGTAGGATAGACAGCACACAG
GAGGGACCAGGCCAATCCCCGACTTACACATTCTACCTCTCCGACCGACTGAGCGCCCGTACGCT
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
Found at i:20749561 original size:26 final size:26
Alignment explanation
Indices: 20749531--20749581 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20749521 TGACTTAGGT
20749531 ATACGAAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
* *
20749557 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
20749582 ATCGGAACGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:20749813 original size:697 final size:698
Alignment explanation
Indices: 20748595--20749904 Score: 1705
Period size: 697 Copynumber: 1.9 Consensus size: 698
20748585 CCTTTCTGGC
* * * * *
20748595 CGACTGAGTGCCCGCACGTTCGTTTCGCTGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCAA
1 CGACTGAGCGCCCACACGCTCGTTTCGATGGTTGGCTCAGGCATACGAAGTTCATTCCATGTCAA
* * *
20748660 AGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAGCATGACCGAT
66 AGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAAGACCGAC
20748725 AGTAGGATCGACAGCACGCAGGAGGGGACCAGGCCAATCCCCGACTTGCACATTCTGCCTCTCCG
131 AGTAGGATCGACAGCACGCAGGAGGGGACCAGGCCAATCCCCGACTTGCACATTCTGCCTCTCCG
* * ** * *
20748790 GCCGACTGAGCGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTC
196 GCCGACTGAACGCCCGGACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTC
* * *
20748855 TCAGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCGGACTGAGGGTTACGGTAACAGGATCG
261 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACTGAGGGTTACGGTAACAGGATCG
* * * *
20748920 ACAGCACGCGAGGGGGACCGGGCTGATCCCCGACTTGCACATTCTGCCCCTCCGACCGACTGAGC
326 ACAGCACACGAGGGGGACCGGGCCGATCCCCGACTTGCAAATTCTGCCCCTCCGACCGACTAAGC
* ** * *
20748985 GCCCGTACTCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGC
391 GCCCGCACTCCCATTTCATGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGCCTAAGCCCCAGC
* * *
20749050 CAGACCGAGGGTTGTGGCAGCGAGACCGACAGCATGTAGAGGGGGACTAGGTCGATCCTCGGCTT
456 CAAACCGAGGGTTGTGGCAGCGAGACAGACAGCACGTAGAGGGGGACTAGGTCGATCCTCGGCTT
* *
20749115 GCGCATTATGCCTCTCCGATCGG-CTCAGCGCTTGAACCCTCATTTCGT-GAGTTGACTTAGGCA
521 GCGCATTATGCCTCTCCGAT-GGACTCAGCGCCTGAACCCTCATTTCATGGA-TTGACTTAGGCA
*
20749178 TACGGAGTTAATTCCCAGTCTAAGATCAGATCAAACTGAAGGTTGTGGTGGCAGGATCGATAGCA
584 TACAGAGTTAATTCCCAGTCTAAGATCAGATCAAACTGAAGGTTGTGGTGGCAGGATCGATAGCA
20749243 CGCATGGGGGACCGGGACGATCCCTGGCTTGCACATTCTACCTTTTCCAT
649 CGCATGGGGGACCGGGACGATCCCTGGCTTGCACATTCTACCTTTTCCAT
* *
20749293 CGACTGAGCGCCCACACGCTCGTTTC-ATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
1 CGACTGAGCGCCCACACGCTCGTTTCGAT-GGTTGGCTCAGGCATACGAAGTTCATTCCATGTCA
* * * * **
20749357 AAGCATACAGATTTCATTCCCAATCTAAGATC-GAAGCGGACCGAGGGTTGTGGTAGCAAGACC-
65 AAGCATACAGAGTTCATTCCCAATCTAAGATCAG-ACCGAACCGAGGGTTGCGACAGCAAGACCG
* * *** * **
20749420 AGCAGTAGGATCTG-CAGCACGCTGG-GGTGACC-GAGCCAATCTTGGGCTTGTGCATTCTGCCT
129 A-CAGTAGGATC-GACAGCACGCAGGAGGGGACCAG-GCCAATCCCCGACTTGCACATTCTGCCT
** * * *
20749482 CTCCGGCCGGTTGAACGTCCGGACGCTCGTTTCATGGGTTGACTTAGGTATACGAAGTTCATCCC
191 CTCCGGCCGACTGAACGCCCGGACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCC
* *
20749547 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAACGGACCT-AGGGTTACGGTAGCA
256 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGA-CTGAGGGTTACGGTAACA
** * * *
20749611 GGATCGGTAGCATAC-AGGGGGGACCGGGCCGATCCCC-AGCTTGCAAATTTTGCCTCTCCGACC
320 GGATCGACAGCACACGA-GGGGGACCGGGCCGATCCCCGA-CTTGCAAATTCTGCCCCTCCGACC
* * *
20749674 GGCTAAGCGCCCGCA-TGCCCATTTCATTGGTTAGCTTAGGCATAAGGAGTTCATTCCATGTCTA
383 GACTAAGCGCCCGCACT-CCCATTTCATGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGCCTA
* * * * *
20749738 AGCCCCAGTCAAATCGAGGGTTGTGGCAGTGGGATCAG-CAGCACGTAGAGGGGGA-TCGGGTCG
447 AGCCCCAGCCAAACCGAGGGTTGTGGCAGCGAGA-CAGACAGCACGTAGAGGGGGACT-AGGTCG
* * * * **
20749801 ATCACT-GGCTTGCGCATTATGCCTCTTCGGTGGACTCAGTGCCTGCATGCTCATTTCATGGATT
510 ATC-CTCGGCTTGCGCATTATGCCTCTCCGATGGACTCAGCGCCTGAACCCTCATTTCATGGATT
* *
20749865 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCTCAGA
574 GACTTAGGCATACAGAGTTAATTCCCAGTCTAAGATCAGA
20749905 CCAGACCGAG
Statistics
Matches: 522, Mismatches: 76, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
696 7 0.01
697 379 0.73
698 135 0.26
699 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (698 bp):
CGACTGAGCGCCCACACGCTCGTTTCGATGGTTGGCTCAGGCATACGAAGTTCATTCCATGTCAA
AGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAAGACCGAC
AGTAGGATCGACAGCACGCAGGAGGGGACCAGGCCAATCCCCGACTTGCACATTCTGCCTCTCCG
GCCGACTGAACGCCCGGACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACTGAGGGTTACGGTAACAGGATCG
ACAGCACACGAGGGGGACCGGGCCGATCCCCGACTTGCAAATTCTGCCCCTCCGACCGACTAAGC
GCCCGCACTCCCATTTCATGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGCCTAAGCCCCAGC
CAAACCGAGGGTTGTGGCAGCGAGACAGACAGCACGTAGAGGGGGACTAGGTCGATCCTCGGCTT
GCGCATTATGCCTCTCCGATGGACTCAGCGCCTGAACCCTCATTTCATGGATTGACTTAGGCATA
CAGAGTTAATTCCCAGTCTAAGATCAGATCAAACTGAAGGTTGTGGTGGCAGGATCGATAGCACG
CATGGGGGACCGGGACGATCCCTGGCTTGCACATTCTACCTTTTCCAT
Found at i:20750176 original size:697 final size:693
Alignment explanation
Indices: 20748477--20750283 Score: 1656
Period size: 697 Copynumber: 2.6 Consensus size: 693
20748467 CCCAGTCTAA
* * * ***
20748477 GCATAC-GAAGTTCATTCCCAGTCTAAGATC-GAACCAGACC-AAGGGTTGCGACAGCAGGATC-
1 GCATACAG-AGTTAATTCCCAGTCTAAGATCAG-ACCAAACCGAA-GGTTGTGGTGGCAGGATCG
** * *** * *
20748538 AGCAGCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTTTCTGGC--CGACTG
63 A-CAGCACCCAGGGGGGACCGGGACGATCCCCAGCTTACACATTCTACC-TTCT-CCATCGACTG
* * * * * * * * * *
20748601 AGTGCCCGCACGTTCGTTTCGCT-GGTTGGCTCAGGCATACGGAGTTCATTCCATGTCAAAGCAT
125 AGCGCCCACACGCTCGTTTC-ATGGGTTGGATTAGGCATACGAAGTTCATCCCATATCTAAGCAT
* * * * * * * *
20748665 ACGGAGTTCATTCCCAATCTAAGATC--AGACCGAACCGAGGGTTGCGACAGCATGACCGATAGT
189 ACAGATTTCATTCCCAATCTAAGATCGAAG-CAG-ACCGAAGG-TGTG-TAGCA-GACC-ACAGC
* * ** * * *
20748728 AGGATC-GACAGCACGCAGGAGGGGACC-AGGCCAATCCCCGACTTGCACATTCTGCCTCTCCGG
248 AGGATCTG-CAGCAAGCAGG-GGTGACCGA-GCCAATCCTGGGCTTACGCATTCTGCCTCTCCGG
* * * *
20748791 CCGACTGAGCGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCT
310 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCT
* * *
20748856 CAGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCGGACTGAGGGTTACGGTAACAGGATCGA
375 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACTGAGGGTTACGGTAACAGGATCGA
* * * *
20748921 CAGCACGCGAGGGGGACCGGGCTGATCCCCGACTTGCACATTCTGCCCCTCCGACCGACTGAGCG
440 CAGCACACGAGGGGGACCGGGCCGATCCCCGACTTGCAAATTCTGCCCCTCCGACCGACTAAGCG
* ** * *
20748986 CCCGTACTCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCC
505 CCCGCACTCCCATTTCATGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGCCTAAGCCCCAGCC
* * *
20749051 AGACCGAGGGTTGTGGCAGCGAGACCGACAGCATGTAGAGGGGGACTAGGTCGATCCTCGGCTTG
570 AAACCGAGGGTTGTGGCAGCGAGACAGACAGCACGTAGAGGGGGACTAGGTCGATCCTCGGCTTG
* *
20749116 CGCATTATGCCTCTCCGATCGGCTCAGCGCTTGAACCCTCATTTCGTGAGTTGACTTAG
635 CGCATTATGCCTCTCCGATCGGCTCAGCGCCTGAACCCTCATTTCATGAGTTGACTTAG
* * * *
20749175 GCATACGGAGTTAATTCCCAGTCTAAGATCAGATCAAACTGAAGGTTGTGGTGGCAGGATCGATA
1 GCATACAGAGTTAATTCCCAGTCTAAGATCAGACCAAACCGAAGGTTGTGGTGGCAGGATCGACA
* * ** * *
20749240 GCACGCATGGGGGACCGGGACGATCCCTGGCTTGCACATTCTACCTTTTCCATCGACTGAGCGCC
66 GCACCCAGGGGGGACCGGGACGATCCCCAGCTTACACATTCTACCTTCTCCATCGACTGAGCGCC
* * *
20749305 CACACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGATT
131 CACACGCTCGTTTCATGGGTTGGATTAGGCATACGAAGTTCATCCCATATCTAAGCATACAGATT
* * *
20749370 TCATTCCCAATCTAAGATCGAAGCGGACCGAGGGTTGTGGTAGCAAGACCAGCAGTAGGATCTGC
196 TCATTCCCAATCTAAGATCGAAGCAGACCGAAGG-TGT-GTAGC-AGACCA-CAGCAGGATCTGC
* * * ** ** * *
20749435 AGCACGCTGGGGTGACCGAGCCAATCTTGGGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAACGT
257 AGCAAGCAGGGGTGACCGAGCCAATCCTGGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGC
* * * * *
20749500 CCGGACGCTCGTTTCATGGGTTGACTTAGGTATACGAAGTTCATCCCCAGTCTAAGCATACGGAG
322 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAG
* * ** *
20749565 TTCATTCCCAGTCTAAGATCGGAACGGACCT-AGGGTTACGGTAGCAGGATCGGTAGCATAC-AG
387 TTCATTCCCAGTCTAAGATCAGAACGGA-CTGAGGGTTACGGTAACAGGATCGACAGCACACGA-
* * *
20749628 GGGGGACCGGGCCGATCCCC-AGCTTGCAAATTTTGCCTCTCCGACCGGCTAAGCGCCCGCA-TG
450 GGGGGACCGGGCCGATCCCCGA-CTTGCAAATTCTGCCCCTCCGACCGACTAAGCGCCCGCACT-
* * * *
20749691 CCCATTTCATTGGTTAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAAATCGAG
513 CCCATTTCATGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGCCTAAGCCCCAGCCAAACCGAG
* * *
20749756 GGTTGTGGCAGTGGGATCAG-CAGCACGTAGAGGGGGA-TCGGGTCGATCACT-GGCTTGCGCAT
578 GGTTGTGGCAGCGAGA-CAGACAGCACGTAGAGGGGGACT-AGGTCGATC-CTCGGCTTGCGCAT
* * * * **
20749818 TATGCCTCTTCGGT-GGACTCAGTGCCTGCATGCTCATTTCATG-GATTGACTTAG
640 TATGCCTCTCCGATCGG-CTCAGCGCCTGAACCCTCATTTCATGAG-TTGACTTAG
* * * *
20749872 GCATACAGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTGCAGTAGCAG-GACCAGC
1 GCATACAGAGTTAATTCCCAGTCTAAGATCAGACCAAACCGAAGGTT---GT-G--GTG----GC
* **
20749936 AGTAGGATCGACAGCACCCAGGGGGGGACCGGGTCGATCCCCAGCTTATGCATTCTACC-TCTCT
56 ---AGGATCGACAGCACCCA-GGGGGGACCGGGACGATCCCCAGCTTACACATTCTACCTTCTC-
** ** *
20750000 GGTCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGGATTAGGCATACGAAGTTCATCCCCA-A
116 CATCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGGATTAGGCATACGAAGTTCAT-CCCATA
* * * *
20750064 TCTAAGCATACAGGA-TTCATTCCTAGTCTAAGATC-AGATCAGACC-AAGG-GT-TA-C-GA-T
180 TCTAAGCATACA-GATTTCATTCCCAATCTAAGATCGA-AGCAGACCGAAGGTGTGTAGCAGACC
* * *
20750121 A-A-CAGGATC-GACAGCAAGCAGGAGG-GATCGAGCCGATCCT-GGCTTACGTATTCTGCCTCT
243 ACAGCAGGATCTG-CAGCAAGCAGG-GGTGACCGAGCCAATCCTGGGCTTACGCATTCTGCCTCT
* * * * *
20750181 CCGGCCGACTGAGCGCCCGCACTC-CGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCAT-TCAA
306 CCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAA
* * *
20750244 TGTCTAAGCAAATGGAGTTCATTCCTAGTCTAAGATCAGA
371 -GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
20750284 CCGGGTCGAA
Statistics
Matches: 918, Mismatches: 147, Indels: 90
0.79 0.13 0.08
Matches are distributed among these distances:
695 2 0.00
696 72 0.08
697 428 0.47
698 240 0.26
699 13 0.01
700 4 0.00
701 2 0.00
702 3 0.00
703 1 0.00
704 1 0.00
705 2 0.00
706 2 0.00
707 2 0.00
709 22 0.02
710 119 0.13
711 5 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (693 bp):
GCATACAGAGTTAATTCCCAGTCTAAGATCAGACCAAACCGAAGGTTGTGGTGGCAGGATCGACA
GCACCCAGGGGGGACCGGGACGATCCCCAGCTTACACATTCTACCTTCTCCATCGACTGAGCGCC
CACACGCTCGTTTCATGGGTTGGATTAGGCATACGAAGTTCATCCCATATCTAAGCATACAGATT
TCATTCCCAATCTAAGATCGAAGCAGACCGAAGGTGTGTAGCAGACCACAGCAGGATCTGCAGCA
AGCAGGGGTGACCGAGCCAATCCTGGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGAACGGACTGAGGGTTACGGTAACAGGATCGACAGCACACGAGGGGGA
CCGGGCCGATCCCCGACTTGCAAATTCTGCCCCTCCGACCGACTAAGCGCCCGCACTCCCATTTC
ATGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGCCTAAGCCCCAGCCAAACCGAGGGTTGTGG
CAGCGAGACAGACAGCACGTAGAGGGGGACTAGGTCGATCCTCGGCTTGCGCATTATGCCTCTCC
GATCGGCTCAGCGCCTGAACCCTCATTTCATGAGTTGACTTAG
Found at i:20751142 original size:26 final size:26
Alignment explanation
Indices: 20751093--20751145 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20751083 GTTGGCTTAG
*
20751093 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20751119 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20751145 G
1 G
20751146 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20751727 original size:12 final size:12
Alignment explanation
Indices: 20751710--20751737 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
20751700 AACAGAAATA
20751710 TGAAGATGTGCT
1 TGAAGATGTGCT
20751722 TGAAGATGTGCT
1 TGAAGATGTGCT
20751734 TGAA
1 TGAA
20751738 CCCACCTACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.07, G:0.32, T:0.32
Consensus pattern (12 bp):
TGAAGATGTGCT
Found at i:20752111 original size:159 final size:160
Alignment explanation
Indices: 20751886--20752251 Score: 411
Period size: 159 Copynumber: 2.3 Consensus size: 160
20751876 CCGTATGCCT
* * *
20751886 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCAAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCACCAACCGGACCAAGGG
* * * * ** *
20751950 TTGTGGCAGCGGGACCTACAACACGCAGAAGGGGACCGAGAGGATCCCCGGCTTGCGCATTATGC
66 TTGCGACAGCAGGACCGACAACACGCAGAAGGGGACCGAGACAATCCCCGACTTGCGCATTATGC
* *
20752015 CTCTT-CGGCAGGTTCAACACCCGCACGCTC
131 CT-TTCCGACAGGCTCAACACCCGCACGCTC
* * * *
20752045 GTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCA-ATCTAAG-ATCAGACCGGACTGAA-
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCACCA-ACCGGAC-CAAG
* * * * * * *
20752107 GGTTGCGACAGCAGGATCGACAGCACGTAGAGGGGGACCGAGCCAATCCCCGACTTGTGCATTCT
64 GGTTGCGACAGCAGGACCGACAACACGCAGAAGGGGACCGAGACAATCCCCGACTTGCGCATTAT
* * * *
20752172 GCCTTTCCGACAGGCTGAGCACCCGTACGCTT
129 GCCTTTCCGACAGGCTCAACACCCGCACGCTC
*
20752204 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCA
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCA
20752252 TACAAAGTTC
Statistics
Matches: 171, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
158 7 0.04
159 158 0.92
160 6 0.04
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (160 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCACCAACCGGACCAAGGG
TTGCGACAGCAGGACCGACAACACGCAGAAGGGGACCGAGACAATCCCCGACTTGCGCATTATGC
CTTTCCGACAGGCTCAACACCCGCACGCTC
Found at i:20752630 original size:26 final size:26
Alignment explanation
Indices: 20752578--20752630 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20752568 GTTGACTTAG
* *
20752578 GCATACAGAGTTCATCCCTAGTTTAA
1 GCATACAGAGTTCATCCCTAATCTAA
*
20752604 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
20752630 G
1 G
20752631 ATTAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:20752972 original size:158 final size:159
Alignment explanation
Indices: 20752796--20753104 Score: 345
Period size: 159 Copynumber: 1.9 Consensus size: 159
20752786 AGCCCCCGTC
* ** * *
20752796 GGACCGAGGGTTCTGGCAGTGGGATCGACAG-ACGTAGAGGGGGACCACGTCGATCCCCGGCTTG
1 GGACCAAGGGTTCTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCACGCCGATCCCCGGCTTG
* * * *
20752860 CGCATTATGCCTCT-TCGGCCAGCTCAGCACCTGCACGCTCGTTCCGTCGGTTGACTTATGCATA
66 CGCATTATACCTCTCT-GACCAGCTCAGCACCCGCACGCTCGTTCCGTCGGTTGACTTAAGCATA
*
20752924 TAGAGTTCATTCC-TAGTCTAAGATTGGATT
130 CAGAGTTCATTCCAT-GTCTAAGATTGGATT
* * * ** *
20752954 GGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGCCGATCCTCGGCTTG
1 GGACCAAGGGTTCTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCACGCCGATCCCCGGCTTG
* * * * * * * * *
20753019 GGCATTCTACCTCTCTGACCGGCTGAGCGCCCGCACGGTCGTTTCGTGGGTTGGCTTAAGCATAC
66 CGCATTATACCTCTCTGACCAGCTCAGCACCCGCACGCTCGTTCCGTCGGTTGACTTAAGCATAC
*
20753084 GGAGTTCATTCCATGTCTAAG
131 AGAGTTCATTCCATGTCTAAG
20753105 TATACGGAGT
Statistics
Matches: 122, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
158 27 0.22
159 93 0.76
160 2 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (159 bp):
GGACCAAGGGTTCTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCACGCCGATCCCCGGCTTG
CGCATTATACCTCTCTGACCAGCTCAGCACCCGCACGCTCGTTCCGTCGGTTGACTTAAGCATAC
AGAGTTCATTCCATGTCTAAGATTGGATT
Found at i:20753082 original size:159 final size:157
Alignment explanation
Indices: 20752678--20753104 Score: 412
Period size: 158 Copynumber: 2.7 Consensus size: 157
20752668 AGCATGTAGT
* * * * *
20752678 GGGACCGA-GCCGATCCCCGGCTTACGTATTCTACCTCTCAGGCCGGCTGAGCGCCCGCACACCC
1 GGGACC-ACGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * *
20752742 ATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCAAAGCCCCCGTCGGACCGAGGGT
65 GTTTCGTGGGTTGGCTTAAGCATAA-GAGTTCATTCCATGTCTAAGCACCCGTCGGACCAAGGGT
** *
20752807 TCTGGCAGTGGGATCGACAGACGTAGAGG
129 TCTGGCAGCAGGATCGACAGACGCAGAGG
* * * * * * *
20752836 GGGACCACGTCGATCCCCGGCTTGCGCATTATGCCTCT-TCGGCCAGCTCAGCACCTGCACGCTC
1 GGGACCACGCCGATCCCCGGCTTGCGCATTCTACCTCTCT-GGCCGGCTGAGCGCCCGCACGCTC
* * * * *** *
20752900 GTTCCGTCGGTTGACTTATGCATATAGAGTTCATTCC-TAGTCTAAG-ATTGGATTGGACCAAGG
65 GTTTCGTGGGTTGGCTTAAGCATA-AGAGTTCATTCCAT-GTCTAAGCACCCG-TCGGACCAAGG
* *
20752963 GTTGTGGCAGCAGGATCGACAGCACGCAGGGG
127 GTTCTGGCAGCAGGATCGACAG-ACGCAGAGG
* ** * * * *
20752995 GGGATCGGGCCGATCCTCGGCTTGGGCATTCTACCTCTCTGACCGGCTGAGCGCCCGCACGGTCG
1 GGGACCACGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
20753060 TTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAG
66 TTTCGTGGGTTGGCTTAAGCATA-AGAGTTCATTCCATGTCTAAG
20753105 TATACGGAGT
Statistics
Matches: 212, Mismatches: 49, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 113 0.53
159 94 0.44
160 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (157 bp):
GGGACCACGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAAGCATAAGAGTTCATTCCATGTCTAAGCACCCGTCGGACCAAGGGTTC
TGGCAGCAGGATCGACAGACGCAGAGG
Found at i:20753104 original size:26 final size:26
Alignment explanation
Indices: 20753075--20753130 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
20753065 TGGGTTGGCT
20753075 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
*
20753101 TAAGTATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
20753127 TAAG
1 TAAG
20753131 ATTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:20753830 original size:26 final size:26
Alignment explanation
Indices: 20753800--20753850 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20753790 GTTGACTTAG
*
20753800 GCATACGGAGTTCA-TCCCTAGTCTAT
1 GCATACGAAGTTCATTCCC-AGTCTAT
20753826 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
20753851 AGATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAT
Found at i:20754869 original size:343 final size:341
Alignment explanation
Indices: 20754380--20755211 Score: 832
Period size: 342 Copynumber: 2.4 Consensus size: 341
20754370 GGATCGGCAA
* ** * * * * * *
20754380 CACATAGAGGGGGATCGAACTGATCCCCGAG-TTATGCATTATGCCTCTCCGACCGGCTTAGCGC
1 CACATAGAGGGGGACCGGGCCGATCCTCG-GCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGC
* * *
20754444 CCGCACGCTCGA-TTCATGGGTTGACTTAGGCCA-ACGAAGTTCATCCCCA-GTCTAAGCATACG
65 CCGCACGCTC-ATTTCGTGGGTTGGCTTAGG-CATACG-AGTTCAT-TCCATGTCTAAGCATACG
* * * ** *
20754506 GAGTTCATACCCAATCTAAGATCGAACCAGACCAAGGGTTACGGTAGCAAGAGTGGCAGCACGCA
126 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGCGTTACGACAGCAAGAGTAGCAGCACGCA
* * * * * * *
20754571 GGGGGGATCGAGCCT-ATCCCTAGCTTACGTATTCTGCCTCTCCGGTCGACTGAGTGCCCGCACG
191 -GGGGGACCGAG-CTGATCCCCAGCTTACGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACA
* * * *
20754635 CCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAA
254 CCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCG-A
* * * *
20754700 G-GTTGTGGCAGCAGGATCGACAG
318 GCATTGAGGCAGCAAGACCGACAG
* * * * * * *
20754723 CACATAG-GGAGGGATCGGGCTGATTCTTGGCTTACGTATTCTGCCTTTTCGACCGGCTGAGTGC
1 CACATAGAGG-GGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGC
* * *
20754787 CCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAACATAAGGAG
65 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACGGAG
** * * * * * * * * * *
20754852 TTCATTTTCAGTCTAAGATCGGATCGGACCGAGCGTTGCGACAGTAGGATTAGTAGCACGTAGGG
129 TTCATTCCCAGTCTAAGATCGAACCAGACCAAGCGTTACGACAGCAAGAGTAGCAGCACGCAGGG
* * * * * *
20754917 GGACCGTGCTGCTCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCACACCCGT
194 GGACCGAGCTGATCCCCAGCTTACGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACACCCGT
* * *
20754982 TTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCTTATCTGAGCCCCAGCCGGACCGAGCATTG
259 TTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAGCATTG
20755047 AGGCAGCAAGACCGACAG
324 AGGCAGCAAGACCGACAG
* * * * * *
20755065 CACGTAGAGGGGGACCGTGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCAACCGACTGAGCGCT
1 CACATAGAGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCC
* * ** * *
20755130 TGCACGCTCGTTTCGTTTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAGGCATACGAAGT
66 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACGGAGT
20755195 TCATTCCCAGTCTAAGA
130 TCATTCCCAGTCTAAGA
20755212 GTTTAAGCCA
Statistics
Matches: 395, Mismatches: 85, Indels: 19
0.79 0.17 0.04
Matches are distributed among these distances:
341 4 0.01
342 249 0.63
343 141 0.36
344 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (341 bp):
CACATAGAGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGAACCAGACCAAGCGTTACGACAGCAAGAGTAGCAGCACGCAGGGGG
ACCGAGCTGATCCCCAGCTTACGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACACCCGTTT
CATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAGCATTGAG
GCAGCAAGACCGACAG
Found at i:20755915 original size:26 final size:26
Alignment explanation
Indices: 20755879--20755930 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20755869 GTTGACTTAG
*
20755879 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
20755905 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20755931 AATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20756653 original size:171 final size:171
Alignment explanation
Indices: 20756342--20756653 Score: 403
Period size: 171 Copynumber: 1.8 Consensus size: 171
20756332 TCTTTGGCCT
* * * * ** *
20756342 GCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATGTGGAGTTCATTCCCTGTCTAAA
1 GCTGAGTGCCCGCACACTCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAA
* * * * * * *
20756407 ACCCAGCCAGACCGAGGGTTGTGGTAGTAGGACCGACAGCGGGATCGATAGCATGAAGAGTGGGA
66 ACCCAACCAGACCGAGGGCTGTGGCAGCAGGACCGACAGCGGAATCGACAGCACGAAGAGTGGGA
*
20756472 TCGGGCTGATCCCTGGCTTGGGCATTATGCCTCTCCAGCCG
131 TCGAGCTGATCCCTGGCTTGGGCATTATGCCTCTCCAGCCG
**
20756513 GCTGAGTGCTTGCACACTCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT-AA
1 GCTGAGTGCCCGCACACTCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAA
* * * *
20756577 GCCCTAACCGGACCGAGGGCTGTGGCAGCAGGACCGACAGCGGAATCGGCAGCACGCAGAG-GGG
66 ACCC-AACCAGACCGAGGGCTGTGGCAGCAGGACCGACAGCGGAATCGACAGCACGAAGAGTGGG
20756641 AATCGAGCTGATC
130 -ATCGAGCTGATC
20756654 TCCAGCTTTC
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
170 8 0.07
171 110 0.93
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (171 bp):
GCTGAGTGCCCGCACACTCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAA
ACCCAACCAGACCGAGGGCTGTGGCAGCAGGACCGACAGCGGAATCGACAGCACGAAGAGTGGGA
TCGAGCTGATCCCTGGCTTGGGCATTATGCCTCTCCAGCCG
Found at i:20756771 original size:26 final size:26
Alignment explanation
Indices: 20756735--20756787 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20756725 GTTAACTTAC
20756735 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20756761 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20756787 G
1 G
20756788 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20757091 original size:159 final size:156
Alignment explanation
Indices: 20756907--20757422 Score: 420
Period size: 159 Copynumber: 3.2 Consensus size: 156
20756897 CCGTTTAATT
* * * * *
20756907 GGTTGGCTTAAGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGCGGGTTATGGGTA
1 GGTTGACTTAGGCATACACAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTATGGGTA
** * * * * *
20756972 CGGGACCGACAGCACACAGAGGGGGACCAGATCGATCCCCGACCTGCGTATTATGCCTCTTCGAT
66 C-GGACCGACAGCACGTAGAGGGGGATC-GATCGATCCCTG-CATGTGCATTATGCCTCTTCGAT
*
20757037 CGGATCAGCGCCCGCACGCTCATTTCATG
128 CGGATGAGCGCCCGCACGCTCATTTCATG
* ** * * *
20757066 GGTTGACTTAGGCATGCACAGTTCATTCCCA-GTCTAAG-ATCGGATTGGACCGAGGGTTGCA-G
1 GGTTGACTTAGGCATACACAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTT--ATG
* ** * *
20757128 CAGTA-GGATTGACAGCACGTAG-GCGGGGATCGAGTCGATCCTCTGCATGTGCATTTTACCTCT
62 -GGTACGGACCGACAGCACGTAGAG-GGGGATCGA-TCGATCC-CTGCATGTGCATTATGCCTCT
* * *
20757191 TCGATCGGTTGAGCGCCCGAATGCTCATTTCATG
123 TCGATCGGATGAGCGCCCGCACGCTCATTTCATG
* * * *
20757225 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAACCCCAGTCGGAAT-GAGGGTTGT-GGT
1 GGTTGACTTAGGCATACACAGTTCATTCCATGTCTAAGCCCCAGTCGG-ATCGAGGGTTATGGGT
*
20757288 AGCAGGATCC-ACAGCACGTAGAGGGGGATCGATCTGATCCCTGGCTTGTGCATTATGCCTCTTC
65 A-C-GGA-CCGACAGCACGTAGAGGGGGATCGATC-GATCCCT-GCATGTGCATTATGCCTCTTC
* * * * * *
20757352 GGTCAGCTGAGCACCCGCACGTTCATTTCGTG
125 GATCGGATGAGCGCCCGCACGCTCATTTCATG
** ** *
20757384 TATTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
1 GGTTGACTTAGGCATACACAGTTCAT-TCCATGTCTAAGC
20757423 ATACGGAGTT
Statistics
Matches: 280, Mismatches: 57, Indels: 40
0.74 0.15 0.11
Matches are distributed among these distances:
156 3 0.01
158 12 0.04
159 248 0.89
160 13 0.05
161 4 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (156 bp):
GGTTGACTTAGGCATACACAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTATGGGTA
CGGACCGACAGCACGTAGAGGGGGATCGATCGATCCCTGCATGTGCATTATGCCTCTTCGATCGG
ATGAGCGCCCGCACGCTCATTTCATG
Found at i:20757431 original size:26 final size:26
Alignment explanation
Indices: 20757395--20757447 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20757385 ATTGACTTAG
20757395 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20757421 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20757447 G
1 G
20757448 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20757805 original size:26 final size:26
Alignment explanation
Indices: 20757775--20757827 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20757765 GTTGACTTAG
20757775 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20757801 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20757827 G
1 G
20757828 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20758867 original size:159 final size:160
Alignment explanation
Indices: 20758604--20759147 Score: 475
Period size: 159 Copynumber: 3.4 Consensus size: 160
20758594 CCTTTCTGGC
* * * * * *
20758604 CGGCTAAGCTCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-AGGAGTT-AATCCCATGTC
1 CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACA-GAGTTCATTCCCA-GTC
* * * * *
20758667 CAAGCCCCAG-CCGAACCGATGGTTGTGGGC-GCGGGACCGACAGCACACAGAGGGGGACCGGGT
64 TAAGCCCCAGTCAG-ACCGAGGGTTGT-GGCAGCAGGATCGACAGCACACAGAGGGGGACCGGGT
*
20758730 CGATCTCT-GGCTTGCGCATTATGCCTCTTCGAT
127 CGATCTCTCGGCTTGCGCATTATGCCTCTTCAAT
* * * * * *
20758763 CGGATCAACGCCCACACGCTCATTTCATGGGTTGACTTAGGCATGCACAGTTCATTCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
**** * * *
20758828 AG-ATTGGATCAGACCGAGGGTT-TCGGTAGCAGGATCGACAGCACATAG-GGGGGACCAGGTCG
66 AGCCCCAG-TCAGACCGAGGGTTGT-GGCAGCAGGATCGACAGCACACAGAGGGGGACCGGGTCG
* * * * *
20758890 ATCT-TCGGCATGCGCATTCTACCTC-TCCAG
129 ATCTCTCGGCTTGCGCATTATGCCTCTTCAAT
* * * *
20758920 CTGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGTATACGGAGTTCATT-CCATGTC
1 C-GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTC
* * * * *
20758984 TAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGGG-CT
64 TAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCGGGTC-
* * *
20759048 GATC-CTCAGCTTGTGCATTATGCCTCTCCAAT
128 GATCTCTCGGCTTGCGCATTATGCCTCTTCAAT
* * ** * * *
20759080 CGGCTGAGCGCTCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTCCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
20759145 AGC
66 AGC
20759148 ATACGGAGTT
Statistics
Matches: 300, Mismatches: 70, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
157 8 0.03
158 122 0.41
159 155 0.52
160 15 0.05
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
AGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCGGGTCGAT
CTCTCGGCTTGCGCATTATGCCTCTTCAAT
Found at i:20759006 original size:158 final size:156
Alignment explanation
Indices: 20758536--20759147 Score: 446
Period size: 159 Copynumber: 3.9 Consensus size: 156
20758526 GATGGTTACA
* * * ** * *
20758536 GCAGTAGGATCGATAGCACGTAGGGGGGACCAGACCGATCCTCGACTTGCGCATTCTGCCTTTCT
1 GCAGCAGGATCGACAGCACATAGGGGGGACCAGGTCGAT-CTCGGCTTGCGCATTCTGCCTCTC-
* * * * * * * *
20758601 GGCCGGCTAAGCTCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTAATCCCATGT
64 CGCTGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * *
20758666 CCAAGCCCCAGCCGAACCGATGGTTGTGG
129 CTAAGCCCCAGTCGGACCGAGGGTTGT-G
* * * * * *
20758695 GC-GCGGGACCGACAGCACACAGAGGGGGACCGGGTCGATCTCTGGCTTGCGCATTATGCCTCTT
1 GCAGCAGGATCGACAGCACATAG-GGGGGACCAGGTCGATCTC-GGCTTGCGCATTCTGCCTCTC
* * * * * **
20758759 CGATCGGATCAA-CGCCCACACGCTCATTTCATGGGTTGACTTAGGCATGCACAGTTCATTCCCA
64 CGCT-GGCT-AAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
**** *
20758823 -GTCTAAG-ATTGGATCAGACCGAGGGTT-TCG
126 TGTCTAAGCCCCAG-TCGGACCGAGGGTTGT-G
* * *
20758853 GTAGCAGGATCGACAGCACATAGGGGGGACCAGGTCGATCTTCGGCATGCGCATTCTACCTCTCC
1 GCAGCAGGATCGACAGCACATAGGGGGGACCAGGTCGATC-TCGGCTTGCGCATTCTGCCTCTCC
* * *
20758918 AGCTGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGT
65 -GCTGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
*
20758983 CTAAGCCCCAGTCGGATCGAGGGTTGTG
129 CTAAGCCCCAGTCGGACCGAGGGTTGTG
* ** * * * * *
20759011 GCAGCAGGATCGGCAGCACGCAGAGGGGGATC-GGGCTGATCCTCAGCTTGTGCATTATGCCTCT
1 GCAGCAGGATCGACAGCACATAG-GGGGGACCAGGTC-GAT-CTCGGCTTGCGCATTCTGCCTCT
** * * * ** * * * * *
20759075 CCAATCGGCTGAGCGCTCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTCCATCCCCA
63 CCGCT-GGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCA
20759140 -GTCTAAGC
126 TGTCTAAGC
20759148 ATACGGAGTT
Statistics
Matches: 348, Mismatches: 87, Indels: 36
0.74 0.18 0.08
Matches are distributed among these distances:
157 4 0.01
158 143 0.41
159 192 0.55
160 9 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCAGCAGGATCGACAGCACATAGGGGGGACCAGGTCGATCTCGGCTTGCGCATTCTGCCTCTCCG
CTGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCCAGTCGGACCGAGGGTTGTG
Found at i:20759069 original size:317 final size:317
Alignment explanation
Indices: 20758541--20759146 Score: 732
Period size: 317 Copynumber: 1.9 Consensus size: 317
20758531 TTACAGCAGT
* * * * * **
20758541 AGGATCGATAGCACGTAGGGGGGACCAGACCGATCCTCGACTTGCGCATTCTGCCTTTCTGGCCG
1 AGGATCGACAGCACATAGGGGGGACCAGACCGATCCTCGACATGCGCATTCTACCTCTCCAGCCG
* *
20758606 GCTAAGCTCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTAATCCCATGTCCAAG
66 GCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTAATCCCATGTCCAAG
* *
20758671 CCCCAGCCGAACCGATGGTTGTGGGCGCGGGACCGACAGCACACAGAGGGGGACCGGGTCGATCT
131 CCCCAGCCGAACCGAGGGTTGTGGGCGCAGGACCGACAGCACACAGAGGGGGACCGGGTCGATCT
* * * *
20758736 CTGGCTTGCGCATTATGCCTCTTCGATCGGATCAACGCCCACACGCTCATTTCATGGGTTGACTT
196 CTAGCTTGCGCATTATGCCTCTCCAATCGGATCAACGCCCACACACTCATTTCATGGGTTGACTT
* * *
20758801 AGGCATGCACAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTTCGGTAGC
261 AGGCATACACAGTCCATCCCCAGTCTAAGATTGGATCAGACCGAGGGTTTCGGTAGC
** * * *
20758858 AGGATCGACAGCACATAGGGGGGACCAGGTCGATCTTCGGCATGCGCATTCTACCTCTCCAGCTG
1 AGGATCGACAGCACATAGGGGGGACCAGACCGATCCTCGACATGCGCATTCTACCTCTCCAGCCG
* * * * * * * *
20758923 GCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAG
66 GCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTAATCCCATGTCCAAG
* * * * * * *
20758988 CCCCAGTCGGATCGAGGGTTGT-GGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGGG-CTGAT
131 CCCCAGCCGAACCGAGGGTTGTGGGC-GCAGGACCGACAGCACACAGAGGGGGACCGGGTC-GAT
* * * * * * ** *
20759051 C-CTCAGCTTGTGCATTATGCCTCTCCAATCGGCTGAGCGCTCGCACACTTGTTTCGTGGGTTGA
194 CTCT-AGCTTGCGCATTATGCCTCTCCAATCGGATCAACGCCCACACACTCATTTCATGGGTTGA
*
20759115 CTTAGGCATACAGAGTCCATCCCCAGTCTAAG
258 CTTAGGCATACACAGTCCATCCCCAGTCTAAG
20759147 CATACGGAGT
Statistics
Matches: 238, Mismatches: 48, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
316 6 0.03
317 232 0.97
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (317 bp):
AGGATCGACAGCACATAGGGGGGACCAGACCGATCCTCGACATGCGCATTCTACCTCTCCAGCCG
GCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTAATCCCATGTCCAAG
CCCCAGCCGAACCGAGGGTTGTGGGCGCAGGACCGACAGCACACAGAGGGGGACCGGGTCGATCT
CTAGCTTGCGCATTATGCCTCTCCAATCGGATCAACGCCCACACACTCATTTCATGGGTTGACTT
AGGCATACACAGTCCATCCCCAGTCTAAGATTGGATCAGACCGAGGGTTTCGGTAGC
Found at i:20759673 original size:514 final size:501
Alignment explanation
Indices: 20758938--20760003 Score: 1256
Period size: 514 Copynumber: 2.1 Consensus size: 501
20758928 GCGCCCGTAC
* *
20758938 GCTCATTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGA
1 GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGA
20759003 GGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCTCAGCTTGTGCATTA
66 GGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCTCAGCTTGTGCATTA
* * ** ** *
20759068 TGCCTCTCCAATCGGCTGAGCGCTCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTCC
131 TGCCTCTCCAACCGGCTGAGCGCCCAAACACTCATTTCGTGGGTTGACTTAGGCATACAGACTCC
* * * *
20759133 ATCCCCAGTCTAAGCATACGGAGTTCAATT-CTAGTCTAAGATCAGACTGGATCG-AGGGTTGCG
196 ATCCCCAGTCTAAGCATACAGAGTTC-ATTCCCAGTCTAAGATCAGAC-CGAACGAAGGGTTGCG
* * *
20759196 GCT-GCAGGATTGGCAGCACG-TAAGGGGGATCGAGCCGATCC-CTGGCTTGCGCATTCTGCCTC
259 G-TAGCAGGATCGGCAGCACGATAA--GGGACCGAGCCGATCCTC-GACTTGCGCATTCTGCCTC
* * ** * *
20759258 TCTAGCCGGTTGAGCGGCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTTCA
320 TCCAGCCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATAAGGAGTTCATTCCA
* * *
20759323 GGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGTGAGACCGACAGAACGCAGAGGTGGATCGG
385 GGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGTGAGACCGACAGAACGCAGAGGGGGATCGG
* ** * *
20759388 G-TCGATCCACGGCTCACACATTCTGCCTCTCCGATCGGTTGAGCAC-CTGCAT
450 GCT-GATCCACGGCTCACACATTATGCCTCTCCGATCGACTCAGCACTC-GAAT
* **
20759440 GCTCGTTTCATGCATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CTG
1 GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC-G
* *
20759504 AGGGTTGTGGTAGCAGGACCGGCAGTAGGATCGGCAGCACGTAGAGGGGGA-CTGGGCTTATCC-
65 AGGGTTGT-G--GC---A---GC---AGGATCGGCAGCACGCAGAGGGGGATC-GGGCTGATCCT
* * *
20759567 CTGGCTTGTGCATTATGCCTCTCCGACCGGCTGGGCGCCCAAACACTCATTTCGTGGGTTGACTT
117 C-AGCTTGTGCATTATGCCTCTCCAACCGGCTGAGCGCCCAAACACTCATTTCGTGGGTTGACTT
* *
20759632 AGGCATAC-GAACTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCG
181 AGGCATACAG-ACTCCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCG
* * *
20759696 AACGAAGGGTTGCGGTAGCAGGATCGGTAGCACGCATAAGGGACCGAGCTGATCCTCGACTTTCG
245 AACGAAGGGTTGCGGTAGCAGGATCGGCAGCACG-ATAAGGGACCGAGCCGATCCTCGACTTGCG
* * * * *
20759761 TATTCTGCCTCTCCGGCCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTCGCTTAGGCATATGG
309 CATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATAAGG
* * * ** * *
20759826 AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGTGGGACTGGTAGCACGTAG
374 AGTTCATTCCAGGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGTGAGACCGACAGAACGCAG
** * * *
20759891 AGGGGGATCGGGCTGATCCACGGCTTGCGCATTATGCCTCTTCGATCTACTCAGCACTCGAAT
439 AGGGGGATCGGGCTGATCCACGGCTCACACATTATGCCTCTCCGATCGACTCAGCACTCGAAT
* *
20759954 GCTCATTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCA-GTCTAAG
1 GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
20760004 ATCAGACCAG
Statistics
Matches: 474, Mismatches: 65, Indels: 38
0.82 0.11 0.07
Matches are distributed among these distances:
501 1 0.00
502 65 0.14
503 1 0.00
505 2 0.00
508 1 0.00
511 2 0.00
513 11 0.02
514 382 0.81
515 6 0.01
516 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (501 bp):
GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGA
GGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCTCAGCTTGTGCATTA
TGCCTCTCCAACCGGCTGAGCGCCCAAACACTCATTTCGTGGGTTGACTTAGGCATACAGACTCC
ATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACGAAGGGTTGCGGT
AGCAGGATCGGCAGCACGATAAGGGACCGAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCAGC
CGGCTGAGCACCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATAAGGAGTTCATTCCAGGTCTA
AGCCCCAGTCAGACCGAGGGTTGTGGCAGTGAGACCGACAGAACGCAGAGGGGGATCGGGCTGAT
CCACGGCTCACACATTATGCCTCTCCGATCGACTCAGCACTCGAAT
Found at i:20760181 original size:26 final size:26
Alignment explanation
Indices: 20760132--20760184 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20760122 GGTTGCTTAG
*
20760132 GCATACGAAGTTCATTGCATGTCTAA
1 GCATACGAAGTTCATTACATGTCTAA
*
20760158 GCATACGGAGTTCATTAC-TAGTCTAA
1 GCATACGAAGTTCATTACAT-GTCTAA
20760184 G
1 G
20760185 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTACATGTCTAA
Found at i:20760552 original size:866 final size:869
Alignment explanation
Indices: 20759406--20761056 Score: 2096
Period size: 866 Copynumber: 1.9 Consensus size: 869
20759396 ACGGCTCACA
* * * * *
20759406 CATTCTGCCTCTCCGATCGGTTGAGCACCTGCATGCTCGTTTCATGCATTGGCTTAGGCATACGG
1 CATTCTGCCTCTCCGACCGGCTGAGCACCCGCATGCTCATTTCATGCATTGGCTTAGGCATACGA
* * * * * * **
20759471 AGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGTAGCAGGACCGGCAGTAGGATC
66 AGTTCATTCCATATCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGCAAGACCGGCAACAGGATC
* * ** * * * *
20759536 GGCAGCACGTAGAGGGGGACTGGGCTTATCCCTGGCTTGTGCATTATGCCTCTCCGACCGGCTGG
131 GACAGCACGTAAAGGGAAACTGGGCTGATCCCTGGCTTGTACATTATGCCTCTCCGACCGACTGA
20759601 GCGCCCAAACACTCATTTCGTGGGTTGACTTAGGCATACGAACTTCATCCCCAGTCTAAGCATAC
196 GCGCCCAAACACTCATTTCGTGGGTTGACTTAGGCATACGAACTTCATCCCCAGTCTAAGCATAC
* * * ** * **
20759666 AGAGTTCATTCCCAGTCTAAGATCGGACCGAACGAAGGGTTGCGGTAGCAGGATCGGTAGCACGC
261 AGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAAGGTTGCGACAGCAAGATCGACAGCA--C
* * * * * *
20759731 AT-AAG-GGACCGAGCT-GATCCTCGACTTTCGTATTCTGCCTCTCCGGCCGGCTGAGCACCCGT
324 ATGAAGAGGACCG-GCTCGATCCCCGACTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCGC
*
20759793 ACGCTCGTTTCATGGGTTCGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGAC
388 ACGCTCGTTTCATGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-AGAC
* * ** * * **
20759857 CGAGGGTTGTGGCAGTGGGACTGGTAGCACGTAGAGGGGGATC-GGGCTGATCCACGGCTTGCGC
452 CGAGGGTTGTGGCAGTGGGACCGGCAGCACACAAAGGGGGACCAGATC-GATCCACGGCTTGCGC
* * * * *
20759921 ATTATGCCTCTTCGATCTA-CTC-A-GCACTCGAATGCTCATTTCATGGGTTGACTTAGGCATGC
516 ATTATGCCTCTTCG-GCCAGCTCAATGC-C-CGAACGCTCATTTCATGGGTTAACTTAGGCATAC
*
20759983 GGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTAC-GGAGCA-GATCGATAGCACA
578 GGAGTTCATTCCCAGTCTAAGATCAGA-CAGAACTGAGGGTTACAGGAGCAGGATCGATAGCACA
* * * *
20760045 CAGGGGGGACCAAGCTGATCTTTGGCTTACGAATTTTGCCTCTCCGA-TCGACTGAACGGCCGCA
642 CAGGGGGGACCAAGCTGATCTCTGGCTTACGAATTCTACCTCTCCGACT-GACTGAACGCCCGCA
*
20760109 CGCTCGTTTCGTGGGTT-GCTTAGGCATAC-GAAGTTCATTGCATGTCTAAGCATACGGAGTTCA
706 CGCTCGTTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCATACGGAGTTCA
20760172 TTACTAGTCTAAGATTGGATCGGACCGAGGGTTGTGGCAGTAGGACTAGCAGTGGGATCGGTAGT
770 TTACTAGTCTAAGATTGGATCGGACCGAGGGTTGTGGCAGTAGGACTAGCAGTGGGATCGGTAGT
20760237 ACGCAAGGAGGGACCGAGTCGATCCCCAGCTTGTG
835 ACGCAAGGAGGGACCGAGTCGATCCCCAGCTTGTG
* * * *
20760272 CATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTATGCTCATTTCATTG-GTTGGCTTAGGCATACG
1 CATTCTGCCTCTCCGACCGGCTGAGCACCCGCATGCTCATTTCA-TGCATTGGCTTAGGCATACG
* * *
20760336 AAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGCAAGACTGGTAACGGGAT
65 AAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGCAAGACCGGCAACAGGAT
* **
20760401 CGATAGCACGTAAAGGGAAA-TCGGGCTGATCCC-GAGCTT-TCACATTATGCCTCTCCGGTCGA
130 CGACAGCACGTAAAGGGAAACT-GGGCTGATCCCTG-GCTTGT-ACATTATGCCTCTCCGACCGA
*** * * *
20760463 CTGAGCGCCTGCACACTCATTTCGTGGGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGC
192 CTGAGCGCCCAAACACTCATTTCGTGGGTTGACTTAGGCATACGAACTTCATCCCCAGTCTAAGC
** * * *
20760528 ATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAAGGTTGCGACAGTAAGATCGACAGC
257 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAAGGTTGCGACAGCAAGATCGACAGC
** * * * *
20760593 ACATGGGGAGGATCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGACTGGTTGAGCACCCG
322 ACATGAAGAGGACCGGCTCGATCCCCGACTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCG
* *
20760658 CACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGAC
387 CACGCTCGTTTCATGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGAC
*
20760723 CGAGGGTTGTGGCAGTGGGACCGGCAGCACACAAAGGGGGACCAGATCGATCCCCGGCTTGCGCA
452 CGAGGGTTGTGGCAGTGGGACCGGCAGCACACAAAGGGGGACCAGATCGATCCACGGCTTGCGCA
* * * * *
20760788 TTATGCCTCTTCGGCCAGCTCAATGCCCGCACGCTCGTTTCATGGGTTAACTTATGCATATGGAT
517 TTATGCCTCTTCGGCCAGCTCAATGCCCGAACGCTCATTTCATGGGTTAACTTAGGCATACGGAG
* ** * * *
20760853 TTCATTCCCAGTCTAAGATCGGATTGAACTGAGGGTTGCAGTAGCAGGATCGATAGCACATAGGG
582 TTCATTCCCAGTCTAAGATCAGACAGAACTGAGGGTTACAGGAGCAGGATCGATAGCACACAGGG
* * * * * * *
20760918 GGGATCGAGCTGATCTCTGGCTTGCGCATTCTACCTTTTCGACTGACTGAGCGCCCGCACGCTCG
647 GGGACCAAGCTGATCTCTGGCTTACGAATTCTACCTCTCCGACTGACTGAACGCCCGCACGCTCG
* *
20760983 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTTGTCTAAGCATACGGAGTTCATTTCTAG
712 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTACTAG
20761048 TCTAAGATT
777 TCTAAGATT
20761057 TTGAGCCACG
Statistics
Matches: 662, Mismatches: 105, Indels: 33
0.83 0.13 0.04
Matches are distributed among these distances:
864 3 0.00
865 11 0.02
866 495 0.75
867 12 0.02
868 82 0.12
869 58 0.09
870 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (869 bp):
CATTCTGCCTCTCCGACCGGCTGAGCACCCGCATGCTCATTTCATGCATTGGCTTAGGCATACGA
AGTTCATTCCATATCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGCAAGACCGGCAACAGGATC
GACAGCACGTAAAGGGAAACTGGGCTGATCCCTGGCTTGTACATTATGCCTCTCCGACCGACTGA
GCGCCCAAACACTCATTTCGTGGGTTGACTTAGGCATACGAACTTCATCCCCAGTCTAAGCATAC
AGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAAGGTTGCGACAGCAAGATCGACAGCACAT
GAAGAGGACCGGCTCGATCCCCGACTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACG
CTCGTTTCATGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAG
GGTTGTGGCAGTGGGACCGGCAGCACACAAAGGGGGACCAGATCGATCCACGGCTTGCGCATTAT
GCCTCTTCGGCCAGCTCAATGCCCGAACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACAGAACTGAGGGTTACAGGAGCAGGATCGATAGCACACAGGGGGGA
CCAAGCTGATCTCTGGCTTACGAATTCTACCTCTCCGACTGACTGAACGCCCGCACGCTCGTTTC
GTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTACTAGTCTA
AGATTGGATCGGACCGAGGGTTGTGGCAGTAGGACTAGCAGTGGGATCGGTAGTACGCAAGGAGG
GACCGAGTCGATCCCCAGCTTGTG
Found at i:20761037 original size:26 final size:26
Alignment explanation
Indices: 20761001--20761053 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20760991 GTTGGCTTAG
*
20761001 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
* *
20761027 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
20761053 G
1 G
20761054 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:20762488 original size:26 final size:26
Alignment explanation
Indices: 20762452--20762517 Score: 98
Period size: 26 Copynumber: 2.5 Consensus size: 26
20762442 CTGGTGCCAG
* *
20762452 ATTCCCAGTCTAAGCATATGGATTTC
1 ATTCCCAGTCTAAGCATACGGAGTTC
20762478 ATT-CCATGTCTAAGCATACGGAGTTC
1 ATTCCCA-GTCTAAGCATACGGAGTTC
20762504 ATTCCCAGTCTAAG
1 ATTCCCAGTCTAAG
20762518 AGTTTGAGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
25 3 0.08
26 30 0.83
27 3 0.08
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (26 bp):
ATTCCCAGTCTAAGCATACGGAGTTC
Found at i:20762560 original size:115 final size:115
Alignment explanation
Indices: 20762240--20762564 Score: 506
Period size: 120 Copynumber: 2.8 Consensus size: 115
20762230 ATTTCATGGG
* *
20762240 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTCAGCCATGGTGCACATG
1 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATG
* *
20762305 CTGGGCTCGGGCATGTACTGGTGCCAGATTCTCAGTCTAAGCATATGGAT
66 CTGGGCTCGGGCATGTGCTGGTGCCAGATTCCCAGTCTAAGCATATGGAT
* * *
20762355 TTCATTCCATATCCAAGCATAGCATACGGAGTTCATTCCCAGTCTAAAAGTTTGAGCCACGGTGC
1 TTCATTCCATGT-C---TA-AGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGC
20762420 ACATGCTGGGCTCGGGCATGTGCTGGTGCCAGATTCCCAGTCTAAGCATATGGAT
61 ACATGCTGGGCTCGGGCATGTGCTGGTGCCAGATTCCCAGTCTAAGCATATGGAT
*
20762475 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCCCATG
1 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATG
* **
20762540 ATGGGCTTAGGCATGTGCTGGTGCC
66 CTGGGCTCGGGCATGTGCTGGTGCC
20762565 GCATTTTTTT
Statistics
Matches: 191, Mismatches: 14, Indels: 10
0.89 0.07 0.05
Matches are distributed among these distances:
115 81 0.42
116 2 0.01
119 2 0.01
120 106 0.55
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.28
Consensus pattern (115 bp):
TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCAGATTCCCAGTCTAAGCATATGGAT
Found at i:20763952 original size:26 final size:26
Alignment explanation
Indices: 20763923--20763975 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20763913 GTTGACTTAG
20763923 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20763949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20763975 G
1 G
20763976 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20764469 original size:158 final size:157
Alignment explanation
Indices: 20764012--20764538 Score: 497
Period size: 159 Copynumber: 3.3 Consensus size: 157
20764002 GCAGGATCGA
* * * * *
20764012 CAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACGAACTGACC
1 CAGCACGCAGAGAGGGATCGAGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACG-GCTGAGC
* * * * *
20764076 ACCCGTACGTCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATGCCATGTCTAAGCCCCAGT
64 GCCCGAACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * ** *
20764141 CGAACCAAGAGTTGTGGCAGTGGGAGTGG
129 CGAATCAAGGGTTGTGGTAGCAGGACTGG
* * * *
20764170 CAGCACGCAGAGAGGGACCGAGCCGATCCCTGGCTTGCGCATTTTGCCTCTCCGGCTGGCTCAGC
1 CAGCACGCAGAGAGGGATCGAGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGAC-GGCTGAGC
** ** * * **
20764235 GCCCGAACGCTTGTTTCATGGGTTAACTTAGGCATACGGATTTCATTTCCA-GTCTAAG-ATCAG
64 GCCCGAACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCA-TTCCATGTCTAAGCCCCAG
* * * * ** *
20764298 ACTGGATCGAGGGTTGCGGTAGCAAAATTGG
128 TC-GAATCAAGGGTTGTGGTAGCAGGACTGG
* * * * *
20764329 CAGCACGTAG-GAGGGATC-AGGCCGATCCTCGACTTACGCATTCTGCCTCTCTGATCGGTTGAG
1 CAGCACGCAGAGAGGGATCGA-GCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGA-CGGCTGAG
* *
20764392 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
63 CGCCCGAACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG
*
20764457 TCGAATTAAGGGTTGTGGTAGCAGGACTGG
128 TCGAATCAAGGGTTGTGGTAGCAGGACTGG
** * * *
20764487 CAGCACATAGAGAGGGATCGAGCCGATACCCAGCTTGCACATTCTACCTCTC
1 CAGCACGCAGAGAGGGATCGAGCCGAT-CCCGGCTTGCGCATTCTGCCTCTC
20764539 AAGCCAACTG
Statistics
Matches: 290, Mismatches: 66, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 6 0.02
158 132 0.46
159 144 0.50
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
CAGCACGCAGAGAGGGATCGAGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACGGCTGAGCGC
CCGAACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCG
AATCAAGGGTTGTGGTAGCAGGACTGG
Found at i:20766959 original size:26 final size:26
Alignment explanation
Indices: 20766905--20766961 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
20766895 TTCTTTCTAA
* ***
20766905 AAAAAGTTTAAAAAATCCTGAACCCT
1 AAAAAGTTTAAAAAATCATGAAAAAT
*
20766931 AAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAGTTTAAAAAATCATGAAAAAT
20766957 AAAAA
1 AAAAA
20766962 ACAAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.12, G:0.07, T:0.21
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCATGAAAAAT
Found at i:20767177 original size:895 final size:892
Alignment explanation
Indices: 20765471--20767360 Score: 2789
Period size: 895 Copynumber: 2.1 Consensus size: 892
20765461 GGAGAACTGA
* * *
20765471 GCTGATCCCTGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
1 GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTCGTTTCATGG
* ** *
20765536 GTTGGCTTAGGGATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTTTCAGTCTAAGAG
66 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAG
* * *
20765601 TTTGAGCCATGGTGCACATGCTGGCTCGAGCATTTACTGGTGCCGTATTTTTTTTGCCCGGGGCA
131 TTTGAGCCACGGTGCACATGCTGGCTCGAGCATGTACTGGTGCCGCATTTTTTTTGCCCGGGGCA
* * * ** *
20765666 TCATCGTCGGAGCATCACCGGAGAGCCTAATCGGTGGCATTGGGGGTTCCGGCGATTGGGACGGC
196 CCATCGTCGGAGCATCACCAGAGAGCCTAACCGGCCGCATTGGGGGTTCCGGCAATTGGGACGGC
* * * * *
20765731 CAAGGGGTGTGCACATATGATGTGTGATTGGTGCTGATACTTGGCCCTTATATTGGCCCCCTGTC
261 CAAGGGGTATGCACACATGATGTGAGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATC
*
20765796 CCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTTCTGCCA
326 CCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
*
20765861 GTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTC
391 GTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATATTCTCCACTTC
20765926 GAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATAAAAGGATCACCTCTACCAAATTTG
456 GAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATAAAAGGATCACCTCTACCAAATTTG
* * ** *
20765991 GGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTG
521 GGGACAAAACTCTTTCTAAAAAAAGTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATG
* ** * *
20766056 AAAAATAGAAAACGGGTTGTCTTGCCACGAAACCTCACATTAAGGCTTAGGGGACCATTGTATGA
586 AAAAATAAAAAACAAGTCGTCTTGCCACGAAACCTCACATGAAGGCTTAGGGGACCATTGTATGA
** * *
20766121 ATTTACAATTCAAAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCTTGAACCCACCTAC
651 ATTTACAAGCCAAAAAAATGGCATTGGCATGGCAGAAATATAAAGATGTGCTTGAACCCACCTAC
* * * * * *
20766186 CACCCGTTCGATCCCCGACTTACGCATCCTGCCTCTCTGGTCGGCTGAGCGTCCGCACGTTCATT
716 CACCCATTCGATCCCCAACTTACACATCCTGCCTCTCTGGTCGGCTGAGCATCCACACGCTCATT
** *
20766251 TTCTAGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATATGGTGTTCATTCCCAGTC
781 TTCTAGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT-CCAGTC
* ** *
20766316 TAAGATTGGACCGGACCGTGGGTTACGGCAGCACGCAGGGGGGACCAG
845 TAAGATCGGACCGGACCAAGGGTTACGACAGCACGCAGGGGGGACCAG
* * ** * * *
20766364 GCTGTTCCCCGGCTTGCGCATTCTGCCTCTTCAGCCAACTGAGCACCCACACGCTCATTTCGTGG
1 GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTCGTTTCATGG
* * **
20766429 GTTGGCTTAGGCATACGAAGTTTATTCCATGTCTAAGCATGTGGAGTTCATTCCCAATCTAAGAG
66 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAG
*
20766494 TTTGAGCCACGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGGC
131 TTTGAGCCACGGTGCACATGCT-GGCTCGAGCATGTACTGGTGCCGCATTTTTTTTGCCCGGGGC
* * **
20766559 ACCATCG-CTGGAGCATCGCCAGAGAGCCTAACCGGCCGCCTTGGGGGTTCCGGCAATTGGGGGG
195 ACCATCGTC-GGAGCATCACCAGAGAGCCTAACCGGCCGCATTGGGGGTTCCGGCAATTGGGACG
* * *
20766623 GCCAGGGGGTATGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
259 GCCAAGGGGTATGCACACATGATGTGAGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTA
*
20766688 TCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
324 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
*
20766753 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATATTCTCCAC
388 CCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATATTCTCCAC
* * * *
20766818 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGAAAGGATCTCCTCTACCAAAT
453 TTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATAAAAGGATCACCTCTACCAAAT
* *
20766883 TTGGGGATAAAATTCTTTCTAAAAAAAGTTTAAAAAATC-CTGAACCCTAAAAAGTTTCAAAAAT
518 TTGGGGACAAAACTCTTTCTAAAAAAAGTTTAAAAAATCTC-GAACCCTAAAAAGTTTCAAAAAT
* *
20766947 CATGAAAAATAAAAAACAAGTCGTCTTGCCACGAAACTTCAGATGAAGGCTTAGGGGACCATTGT
582 CATGAAAAATAAAAAACAAGTCGTCTTGCCACGAAACCTCACATGAAGGCTTAGGGGACCATTGT
*
20767012 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAAAGATGTGCTTGAACCCAC
647 ATGAATTTACAAGCCAAAAAAATGGCATTGGCATGGCAGAAATATAAAGATGTGCTTGAACCCAC
* * * *
20767077 CTACCACTCATTCGATCCCCAACTTTCACATCTTGCCTCTCTGGTCGGTTGAGCATCCACACGCT
712 CTACCACCCATTCGATCCCCAACTTACACATCCTGCCTCTCTGGTCGGCTGAGCATCCACACGCT
* * *
20767142 CA-TTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCTCAGTCTAAGCATACAGAGTTCATTCC
777 CATTTTC-TAGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCC
* * *
20767206 AGTCTAAGATCGGATCGGACCAAGGGTTGCGACAGCACGCAGGGGGGACCGG
841 AGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCACGCAGGGGGGACCAG
* * * * * * * *
20767258 GCCGATCCCCAGCTTACGCATTCTGTCTCTCCCGTCGGCTGAGCACCCGCACGC-CTGTTTCTTA
1 GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTC-GTTTCATG
* *
20767322 GGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20767361 CCTAGCTGGA
Statistics
Matches: 883, Mismatches: 108, Indels: 11
0.88 0.11 0.01
Matches are distributed among these distances:
893 135 0.15
894 309 0.35
895 439 0.50
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.27
Consensus pattern (892 bp):
GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCACGCTCGTTTCATGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAG
TTTGAGCCACGGTGCACATGCTGGCTCGAGCATGTACTGGTGCCGCATTTTTTTTGCCCGGGGCA
CCATCGTCGGAGCATCACCAGAGAGCCTAACCGGCCGCATTGGGGGTTCCGGCAATTGGGACGGC
CAAGGGGTATGCACACATGATGTGAGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
GTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATATTCTCCACTTC
GAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATAAAAGGATCACCTCTACCAAATTTG
GGGACAAAACTCTTTCTAAAAAAAGTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATG
AAAAATAAAAAACAAGTCGTCTTGCCACGAAACCTCACATGAAGGCTTAGGGGACCATTGTATGA
ATTTACAAGCCAAAAAAATGGCATTGGCATGGCAGAAATATAAAGATGTGCTTGAACCCACCTAC
CACCCATTCGATCCCCAACTTACACATCCTGCCTCTCTGGTCGGCTGAGCATCCACACGCTCATT
TTCTAGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCAGTCT
AAGATCGGACCGGACCAAGGGTTACGACAGCACGCAGGGGGGACCAG
Found at i:20767198 original size:26 final size:25
Alignment explanation
Indices: 20767162--20767213 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20767152 GTTGACTTAG
20767162 GCATACAGAGTTCATCCTCAGTCTAA
1 GCATACAGAGTTCATCC-CAGTCTAA
*
20767188 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATCCCAGTCTAA
20767213 G
1 G
20767214 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTCTAA
Found at i:20767850 original size:26 final size:25
Alignment explanation
Indices: 20767821--20767899 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
20767811 GTTGACTTAG
20767821 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACG-AGTTCATCCCCAGTCTAA
20767847 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAC-GAGTTCATCCCCAGTCTAA
* *
20767873 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATAC-GAGTTCATCCCCAGTCTAA
20767899 G
1 G
20767900 ATCAGACTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATCCCCAGTCTAA
Found at i:20773970 original size:26 final size:26
Alignment explanation
Indices: 20773921--20773973 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20773911 GTTGGCTTAG
*
20773921 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20773947 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20773973 G
1 G
20773974 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20774677 original size:26 final size:26
Alignment explanation
Indices: 20774641--20774719 Score: 108
Period size: 26 Copynumber: 3.0 Consensus size: 26
20774631 GTTGACTTAG
*
20774641 GCATACAGAGTTCATCACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
*
20774667 GCATATGGAGTTCATCACCAGTC-ACA
1 GCATACGGAGTTCATCACCAGTCTA-A
20774693 GCATACGGAGTTCATTC-CCAGTCTAA
1 GCATACGGAGTTCA-TCACCAGTCTAA
20774719 G
1 G
20774720 ATCGGATCGG
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.02
26 43 0.91
27 3 0.06
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:20775028 original size:26 final size:26
Alignment explanation
Indices: 20774998--20775050 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20774988 GTTGGCTTAG
*
20774998 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20775024 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20775050 G
1 G
20775051 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20775709 original size:158 final size:156
Alignment explanation
Indices: 20775220--20775721 Score: 427
Period size: 158 Copynumber: 3.2 Consensus size: 156
20775210 CCCAGTCCAA
* * * * *
20775220 GCATATGGAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATATGGAGTTCATTCCATGTCTAAGATCAGA-CAGA-CGAGGGTTGTGGCAGTAGGATCGACA
* * * *
20775285 GCACGCAGGAGGGACCGGG-TCGATCCCC-AGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCG
64 GCACGAAGGAGGGACCGGGCT-GATCCCCGA-CTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCG
* *
20775348 CCCGCATGCCCGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * ** * **
20775378 GCACAGGGAGTTCATTCCATGTCAAAGCCTCAGTCAGACTGAGGGTTGTGGCAGCGGGACCGGTA
1 GCATATGGAGTTCATTCCATGTCTAAG-ATCAGACAGAC-GAGGGTTGTGGCAGTAGGATCGACA
*** * ** * * * * * *
20775443 GCACGCAAAGG-GGGACCAAACTGATCCTCGGTTTGCCCATTATGCCTCTTCGGGCAGCTCAGTG
64 GCACG--AAGGAGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCG
* * *
20775507 CCCGAACACTCGTTTCGTGGGTTGACTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*** * * *
20775537 GCATAAAAAATTCATTCCCA-GTCTAAGATCAGACTAGATCGAGGGTTGTGGTAGTAGGATCGCC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGAC-AGA-CGAGGGTTGTGGCAGTAGGATCGAC
* * * * * * *
20775601 ATCACGTAGGAGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTTGGTCGGTTGAACGC
63 AGCACGAAGGAGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGC
*
20775666 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
20775695 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
20775722 CATACGAAGT
Statistics
Matches: 257, Mismatches: 76, Indels: 22
0.72 0.21 0.06
Matches are distributed among these distances:
157 7 0.03
158 136 0.53
159 106 0.41
160 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACAGACGAGGGTTGTGGCAGTAGGATCGACAGC
ACGAAGGAGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20776080 original size:26 final size:26
Alignment explanation
Indices: 20776051--20776103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20776041 GTTGGCTTAG
*
20776051 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20776077 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20776103 G
1 G
20776104 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20776806 original size:26 final size:26
Alignment explanation
Indices: 20776770--20776822 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20776760 GTTGACTTAG
*
20776770 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
20776796 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
20776822 G
1 G
20776823 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20777127 original size:159 final size:158
Alignment explanation
Indices: 20776796--20777448 Score: 465
Period size: 159 Copynumber: 4.1 Consensus size: 158
20776786 CCCAATCTAA
* * * * * * * * * *
20776796 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGTAGGATCGATA
1 GCATACGGAGTTCATT-CCAATCTAAGACCAGACCAGACTGAGGGTTACGGCAGCAGGATCGACA
** * * ** ** * * * *
20776861 GCACGTAG-GGGGGACCTA-ATCGATCCCCGGCTTGCGCATTCTATCTCTCCG-CCAGCTGAGCG
65 GCACGTAGAGGGGGACC-AGGCCGATCCCCGACATGCGCATGATGCCTCTCCGATCGGCTCAACG
** * *
20776923 CCCGCCCGCCCGTTTCATGGGTTGGCTTAG
129 CCCGAACGCTCGTTTCATGGGTTGACTTAG
* * * ** ** *
20776953 GCATATGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGTGGGATCGAG
1 GCATACGGAGTTCATTCCA-ATCTAAG-ACCAGACCAGACTGAGGGTTACGGCAGCAGGATCGAC
* * * * * *
20777017 AGCACGTAGAGGGGGACCGGGTCGATCCCTGACTTGCGTATGATGCCTTTCCGATCGGCTCAACG
64 AGCACGTAGAGGGGGACCAGGCCGATCCCCGACATGCGCATGATGCCTCTCCGATCGGCTCAACG
* *
20777082 CCCGAACGCTCGTTTCGTGGGTTGACTTAT
129 CCCGAACGCTCGTTTCATGGGTTGACTTAG
* * *
20777112 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCCGACTGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAATCTAAGACCAGACCAGACTGAGGGTTACGGCAGCAGGATCGACA
* * * * * *
20777177 GCACGTAGAGGGGGATCAGGCCGATCCCCGTCATGCGCATTATGCCTCTCCGGTTGGCTCAGCGC
65 GCACGTAGAGGGGGACCAGGCCGATCCCCGACATGCGCATGATGCCTCTCCGATCGGCTCAACGC
*
20777242 CCGAACGCTCATTTCATGGGTTGACTTAG
130 CCGAACGCTCGTTTCATGGGTTGACTTAG
* * * * * * * ** *
20777271 GCATACGGAGTTCATTCCCACCATAGGATCAG-CTCGGACCGAGGGTTGCGATAACAGGATCGAC
1 GCATACGGAGTTCATTCCAATC-TAAGACCAGAC-CAGACTGAGGGTTACGGCAGCAGGATCGAC
* * * * * * ** * ** * *
20777335 GGCACGCAGGGGGGGACCAGGCCGTTCCCCGGCTTGCGCATTCTACCTCTCCGGCCAG-TTAAGC
64 AGCACGTAGAGGGGGACCAGGCCGATCCCCGACATGCGCATGATGCCTCTCCGATCGGCTCAA-C
* * * *
20777399 GCCCGCACGTTTGTTTCGTGGGTT-AGCTTAG
128 GCCCGAACGCTCGTTTCATGGGTTGA-CTTAG
20777430 GCATACGGAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
20777449 TGTCTAAGTA
Statistics
Matches: 398, Mismatches: 87, Indels: 20
0.79 0.17 0.04
Matches are distributed among these distances:
156 3 0.01
157 53 0.13
158 45 0.11
159 294 0.74
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAATCTAAGACCAGACCAGACTGAGGGTTACGGCAGCAGGATCGACAG
CACGTAGAGGGGGACCAGGCCGATCCCCGACATGCGCATGATGCCTCTCCGATCGGCTCAACGCC
CGAACGCTCGTTTCATGGGTTGACTTAG
Found at i:20777468 original size:26 final size:26
Alignment explanation
Indices: 20777432--20777482 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20777422 TAGCTTAGGC
20777432 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
20777458 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
20777483 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:20779306 original size:26 final size:26
Alignment explanation
Indices: 20779270--20779322 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20779260 GTTGACCTAG
20779270 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20779296 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20779322 G
1 G
20779323 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20781000 original size:593 final size:593
Alignment explanation
Indices: 20779825--20781012 Score: 1717
Period size: 593 Copynumber: 2.0 Consensus size: 593
20779815 AGTCTAAGAT
* * * ** *
20779825 TTTGAGCCACGGTGCACATGCTAGGCTCGAGCATGTGCTGGTACCATATTTTTTTCTCTTGGGGC
1 TTTGAGCCACAGTGCACATGCTAGGCTCGAGCATGTGCGGGTACCATATTTTTTTCACCCGGGCC
* * * *
20779890 ACCATCATCGGAGCATCGCCGAAGAGCCTAACCGACGGCATTGGGGGTTTCGACGATTGGGGGGG
66 ACCATCATCGAAGCATCACCGAAGAACCTAACCGACGGCATTGGGGGTTTCGACGATTGGAGGGG
20779955 CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
131 CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
20780020 CCCTCATCAAACCTCAGGAACTCACACCCCCTTAAAGAGCATTTGATATTTTATAGGTTTGCTGC
196 CCCTCATCAAACCTCAGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
* ** *
20780085 TAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAACGGTCACAAAATCTTCTCCACT
261 CAGTAGCCATTAAAGTGTCTGAAATAAGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACT
* * *
20780150 TCGAGGTTTTATTAGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATT
326 TCGAGGTTTTACTAGAATTTTTTTATGCATGCCAACAAAAATAAAAGGATCACCTCTACCAAATT
* * * * *
20780215 TGGGGACAAGACGCTTTCTAAAAAATTTGTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCG
391 TAGGGACAAAACGATTTCTAAAAAATTTGTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCA
20780280 TGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTAAACATGAAGGCTTAGGGGACCATTGTAT
456 TGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTAAACATGAAGGCTTAGGGGACCATTGTAT
* *
20780345 GAATTTACAAGCCATAAAAATGGGATTGGCATGGCAGAAATATGAAGATGTACTTGAACCCACCT
521 GAATTTACAAGCCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTACTTGAACCCACCT
20780410 ACCACCCG
586 ACCACCCG
* * * * *
20780418 TTTGAGCCACAGTGCACATGCTGGGCTTGGGCATGTGCGGGTGCCGTATTTTTTTCACCCGGGCC
1 TTTGAGCCACAGTGCACATGCTAGGCTCGAGCATGTGCGGGTACCATATTTTTTTCACCCGGGCC
* * *
20780483 ACCATCGTCGAAGCATCACCGGAGAACCTAACC-ATCGGCATTGTGGGTTTCGACGATTGGAGGG
66 ACCATCATCGAAGCATCACCGAAGAACCTAACCGA-CGGCATTGGGGGTTTCGACGATTGGAGGG
* * *
20780547 GTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTA
130 GCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* **
20780612 TCCCTCATCAAACCT-TGAGAACTCACACCTTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
195 TCCCTCATCAAACCTCAG-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
*
20780676 GCCAGTAGCCATTAAAGTGTCTGAAATAAGGACAC-TTTTTCAAATGGTCACAAAATCTTCTCCA
259 GCCAGTAGCCATTAAAGTGTCTGAAATAAGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCA
* * * * *
20780740 CTTCTAGTTTTTGCTA-ACTTTTTTTATGCAT-CTCGACAAAAATAAAAGGATCACCTCTACCAA
324 CTTCGAGGTTTTACTAGAATTTTTTTATGCATGC-CAACAAAAATAAAAGGATCACCTCTACCAA
* * * * * *
20780803 ATTTAGGGACAAAACTATTTTTAAAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
388 ATTTAGGGACAAAACGATTTCTAAAAAATTTGTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAA
* **
20780868 TCATGAAAAATAGAAAAAAATGAGAT-GTCTTGCCACGAAACTTCACATGAAGGCTTAGAGGG-C
453 TCATGAAAAATAG---AAAACGAG-TCGTCTTGCCACGAAACTAAACATGAAGGCTTAG-GGGAC
* * * * *
20780931 CATTGTATGAATTTACAGGCCATAACAATGGCATTGGCACGGTAGAAATATTAAGATGTGCTT-A
513 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTACTTGA
20780995 ACCCACCTACCACCCG
578 ACCCACCTACCACCCG
20781011 TT
1 TT
20781013 CGATCTTCGC
Statistics
Matches: 528, Mismatches: 59, Indels: 16
0.88 0.10 0.03
Matches are distributed among these distances:
590 1 0.00
591 108 0.20
592 42 0.08
593 279 0.53
594 94 0.18
595 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (593 bp):
TTTGAGCCACAGTGCACATGCTAGGCTCGAGCATGTGCGGGTACCATATTTTTTTCACCCGGGCC
ACCATCATCGAAGCATCACCGAAGAACCTAACCGACGGCATTGGGGGTTTCGACGATTGGAGGGG
CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCAGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATAAGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACT
TCGAGGTTTTACTAGAATTTTTTTATGCATGCCAACAAAAATAAAAGGATCACCTCTACCAAATT
TAGGGACAAAACGATTTCTAAAAAATTTGTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTAAACATGAAGGCTTAGGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTACTTGAACCCACCT
ACCACCCG
Found at i:20781121 original size:26 final size:26
Alignment explanation
Indices: 20781085--20781137 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20781075 GTTGACTTAG
20781085 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACGGAGTTCATT-CCCAGTCTAA
*
20781111 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20781137 G
1 G
20781138 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20781420 original size:159 final size:157
Alignment explanation
Indices: 20781249--20781610 Score: 399
Period size: 157 Copynumber: 2.3 Consensus size: 157
20781239 CTCGTATGCC
** * * *
20781249 CGTTTCATGGGTTGGCTTAGGCATAAAGAATTCATTCCATTTCTAAGTAGCAG-TCGGACTGAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-AGCAGACCGGACTGAGG
* * * * * *
20781313 GTTGTGACAGCGGGACCGATAGC-TCGCAGAAGGGGATCGAGCCGATCCTCGGCTTGCGCATTAT
65 GTTGCGACAGCGAGACCGACAGCAT-GCAG--GGGGACCGAGCCGATCCTCGACTTACGCATTAT
20781377 GCCTCTCTAG-CCGGCTCAACACCCAAACGCT
127 GCCTCTC-AGACCGGCTCAACACCCAAACGCT
* * *
20781408 CGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCA-GTCTAAGATCAGACCGGACTGAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGAGCAGACCGGACTGAGG
* * * * * *
20781472 GTTGCGACAGCGAGATCGACCGCATGCAGGGGGCCCGGGTCGATCCTCGACTTACGCATTCTGCC
65 GTTGCGACAGCGAGACCGACAGCATGCAGGGGGACCGAGCCGATCCTCGACTTACGCATTATGCC
* * * * * *
20781537 TGTCCGACCGGCTGAACGCCTACACGCT
130 TCTCAGACCGGCTCAACACCCAAACGCT
*
20781565 CGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
20781611 ACATACGGAG
Statistics
Matches: 169, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
156 4 0.02
157 88 0.52
158 4 0.02
159 69 0.41
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAGCAGACCGGACTGAGGG
TTGCGACAGCGAGACCGACAGCATGCAGGGGGACCGAGCCGATCCTCGACTTACGCATTATGCCT
CTCAGACCGGCTCAACACCCAAACGCT
Found at i:20781616 original size:26 final size:26
Alignment explanation
Indices: 20781586--20781636 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20781576 TTGGCTTAGG
20781586 CATACGGAGTTCATTCC-ATGTCTAAA
1 CATACGGAGTTCATTCCTA-GTCTAAA
20781612 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCTAGTCTAA
20781637 GATCGGATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAA
Found at i:20781811 original size:26 final size:26
Alignment explanation
Indices: 20781781--20781833 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20781771 GTTGACTTAG
20781781 GCATACAGAGTTC-ATCCCTAGTCTAA
1 GCATACAGAGTTCTATCCC-AGTCTAA
** *
20781807 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCTATCCCAGTCTAA
20781833 G
1 G
20781834 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCTATCCCAGTCTAA
Found at i:20782001 original size:26 final size:26
Alignment explanation
Indices: 20781965--20782017 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20781955 GTTGGCTTAG
* *
20781965 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
20781991 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
20782017 G
1 G
20782018 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:20782382 original size:26 final size:26
Alignment explanation
Indices: 20782347--20782398 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20782337 TGGCTTAGGA
20782347 ATACAGAGTTCATTCCAAGTCTAAGG
1 ATACAGAGTTCATTCCAAGTCTAAGG
* *
20782373 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACAGAGTTCATTCCAAGTCTAAGG
20782399 TCAGACTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCAAGTCTAAGG
Found at i:20782517 original size:380 final size:378
Alignment explanation
Indices: 20781428--20782517 Score: 1178
Period size: 380 Copynumber: 2.9 Consensus size: 378
20781418 GTTGACTTAG
* * *
20781428 GCATACGGAGTTT-ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCGA-GATCGA
1 GCATATGGA-TTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGATTGCGACAG-GAGGATCGA
* ** * * * * * * *
20781491 CCGCATGCA-GGGGGCCCGGGTCGATCCTCGACTTACGCATTCTGCCTGTCCGACCGGCTGAACG
64 CAGCATGCAGGGGGGATCGAGCCGATCCCCG-CTTGCGCATTCTGCCTCTCAGACCGGCTGAGCG
* * *
20781555 CCTACACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACATACGGA
128 CCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * * ** * * *
20781620 GTTCATTCCTAGTCTAAGATCGGATCGGATCGAAGGTTATGGTAGTAGGACCAGTAGCAGGATCG
193 GTTCATTCCAAGTCTAAGATCAGATCGGATCGAAGGTTACGACAGTAGGGCCAGAAACAGGATCG
* * * * * * * * *
20781685 ACAGCATGCAAGGAGGATCTG-GTCGATCCCCAACTTGGGAATTCTGCCTCTCCGATTGATTGAG
258 ACAGCACG-TAGGGGGA-CCGAGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGATCGACTGAG
* *
20781749 CGCCCATACGCTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAA
321 CGCCCGTACGCTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAA
* * * ** * **
20781807 GCATATGGAGTTCTTTCCCAGTCTAAGATCAGACTAGACCAAGGCTTGC-AGCAACAGGATC-AG
1 GCATATGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGATTGCGA-CAGGAGGATCGA-
* * * * * * * * *
20781870 CAGCACGCAGAGAGGATC-AGGCCAATCCCCGGCATGCGCATTCTACTTCTCAGATCGGTTGAGC
64 CAGCATGCAGGGGGGATCGA-GCCGATCCCC-GCTTGCGCATTCTGCCTCTCAGACCGGCTGAGC
* * * * *
20781934 GCCCAAACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAG
127 GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
* *
20781999 AGTTCATTCCAAGTCTAAGATCAGATCGGATCGAAGGTTACTACAGTTGGGCCA-AAAGCAGGAT
192 AGTTCATTCCAAGTCTAAGATCAGATCGGATCGAAGGTTACGACAGTAGGGCCAGAAA-CAGGAT
* * * *
20782063 CAACAGCAC-TCATGAGGGACCGAGTCGATCCTCGACTTGCGTATTCTGCCTCTCCGACCGACTG
256 CGACAGCACGT-A-GGGGGACCGAGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGATCGACTG
* * *
20782127 AGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCTCAGTCTAA
319 AGCGCCCGTACGCTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCT-AGTCTAA
*
20782187 GCATATGGATTTCATTCCCAATCTAAGATCAGACCAGACTGAGGATTGCGACAGGAGGATCGACA
1 GCATATGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGATTGCGACAGGAGGATCGACA
* * * *
20782252 GCATGCAGGGGGGATCGAACCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCGCC
66 GCATGCAGGGGGGATCGAGCCGATCCCC-GCTTGCGCATTCTGCCTCTCAGACCGGCTGAGCGCC
* * * * *
20782317 CGCACGCTCGTTTCATGGGTTGGCTTAGGAATACAGAGTTCATTCCAAGTCTAAGGATACGGAGT
130 CACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
* * * *
20782382 TCATTCCCAGTCTAAGGTCAGA-CTGGA-CCAAGGGTTACGACAGTAGGGCCAGCAACAGGATCG
195 TCATTCCAAGTCTAAGATCAGATC-GGATCGAA-GGTTACGACAGTAGGGCCAGAAACAGGATCG
* * * *
20782445 ACAGCACGTAGGGGGCACCGAGTCGATCCCCGACTTACGTATTCTACCTCTTCGATCGGCTGAGC
258 ACAGCACGTAGGGGG-ACCGAGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGATCGACTGAGC
*
20782510 ACCCGTAC
322 GCCCGTAC
20782518 ACCCGTACGC
Statistics
Matches: 577, Mismatches: 114, Indels: 39
0.79 0.16 0.05
Matches are distributed among these distances:
378 5 0.01
379 66 0.11
380 499 0.86
381 7 0.01
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.23
Consensus pattern (378 bp):
GCATATGGATTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGATTGCGACAGGAGGATCGACA
GCATGCAGGGGGGATCGAGCCGATCCCCGCTTGCGCATTCTGCCTCTCAGACCGGCTGAGCGCCC
ACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTT
CATTCCAAGTCTAAGATCAGATCGGATCGAAGGTTACGACAGTAGGGCCAGAAACAGGATCGACA
GCACGTAGGGGGACCGAGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGATCGACTGAGCGCCC
GTACGCTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAA
Found at i:20783219 original size:26 final size:26
Alignment explanation
Indices: 20783189--20783241 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20783179 GTTGATTTAG
*
20783189 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* *
20783215 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
20783241 G
1 G
20783242 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:20783922 original size:26 final size:26
Alignment explanation
Indices: 20783886--20783938 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20783876 GTTGACTTAG
* *
20783886 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
20783912 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
20783938 G
1 G
20783939 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:20783927 original size:196 final size:196
Alignment explanation
Indices: 20783622--20783979 Score: 477
Period size: 196 Copynumber: 1.8 Consensus size: 196
20783612 TCGGGCTGAT
* * ** *
20783622 CCCGACTTATGCATTCTGCCTCTTCGACCGGTTGAGTGCTCGCACGCCCATTTTGTGGGTTGACT
1 CCCGACTTATGCATTCTGCCTCTCCAACCGACTGAGTGCTCGCACGCCCATTTCGTGGGTTGACT
* *** ** *
20783687 TAGACATACAGAGTTCATTCTGTGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCA
66 TAGACATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCA
* *
20783752 GACCGAGGGTTGTGGTAGTAGGACCAGTAGCAGGATCGACAGCACGTAGGGGGGACCGAGACGAT
131 GACCGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGACAGCACGTAGGGGGGACCGAGACGAT
20783817 C
196 C
* * *
20783818 CCCGACTTGTGCATTCTGCCTCTCCAACCGACTGACCGT-C-CGCACGCTCGTTTCGTGGGTTGA
1 CCCGACTTATGCATTCTGCCTCTCCAACCGACTGA--GTGCTCGCACGCCCATTTCGTGGGTTGA
* *
20783881 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGAC
64 CTTAGACATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGAC
* * * *
20783946 CGGATCGAGGGTTGCGGTAGCAGGATCGGTAGCA
129 CAGACCGAGGGTTGCGGTAGCAGGACCAGTAGCA
20783980 CGCAGGGGGG
Statistics
Matches: 137, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
196 134 0.98
197 1 0.01
198 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (196 bp):
CCCGACTTATGCATTCTGCCTCTCCAACCGACTGAGTGCTCGCACGCCCATTTCGTGGGTTGACT
TAGACATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCA
GACCGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGACAGCACGTAGGGGGGACCGAGACGAT
C
Found at i:20784256 original size:26 final size:26
Alignment explanation
Indices: 20784220--20784271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20784210 GTTGACTTAG
20784220 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20784246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20784272 AAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20784973 original size:26 final size:26
Alignment explanation
Indices: 20784937--20784990 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
20784927 TAGGTTGACT
*
20784937 TAGGCTTACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
*
20784963 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
20784989 TA
1 TA
20784991 AGATCAGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:20785296 original size:158 final size:159
Alignment explanation
Indices: 20784963--20785469 Score: 372
Period size: 158 Copynumber: 3.2 Consensus size: 159
20784953 ATCCCCAGTC
* * * **
20784963 TAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTAGAAC-AAGGGTTGCAGCAGTAGGA
1 TAGGCATACGAAGTTCATT-CCATGTCTAAGCACCAGACCAG-ACTAAGGGTTGCAGCAACAGGA
* * * * ** * * * * * *
20785025 TCGACAGCACGCAGGGGGGACCGGGCGGATCCCCGGCTTGC-ACATTCTGCTTCTCC-GACCAGC
64 TCGACAACACGAAGGAGAGACCGGGCTAATCCCCGACTTACGA-ATTATGCCTCTCCAG-TCGGC
* * * * * ** *
20785088 TGAGCACCCGTACGCCCATGTCGCGCATTGGCT
127 TGAGCGCCCGAACGCTCATTTCGTGGGTTGACT
* * * * * ** * *
20785121 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACTGAGGGTTGTGGCAGCGGGATC
1 TAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGACCAGACTAAGGGTTGCAGCAACAGGATC
*
20785185 GACATACAC-AGAGG-GGGACCGGGCTAATCCCCGACTTACGAATTATGCCTCTCCAGTCGGCTC
66 GACA-ACACGA-AGGAGAGACCGGGCTAATCCCCGACTTACGAATTATGCCTCTCCAGTCGGCT-
20785248 GA-CGCCCGAACGCTCATTTCGTGGGTTGACT
128 GAGCGCCCGAACGCTCATTTCGTGGGTTGACT
* * * * * *
20785279 TAGGCATACGAAATTCATTCC-TAGT-TCAAG-ATCAGACCGGATTAAGGTTTGCAGTAACAGGA
1 TAGGCATACGAAGTTCATTCCAT-GTCT-AAGCACCAGACCAGACTAAGGGTTGCAGCAACAGGA
* ** * * * *
20785341 TCGACAACACGCAAGGAGAGACCGGGTTGGTCCCCGACTTATGCATTCTGCCTCTCCGGTCGGCT
64 TCGACAACACG-AAGGAGAGACCGGGCTAATCCCCGACTTACGAATTATGCCTCTCCAGTCGGCT
* * * *
20785406 GAGTGCCCGCACGCTCGTTTCGTGGGTTGGCT
128 GAGCGCCCGAACGCTCATTTCGTGGGTTGACT
20785438 TAGGCATACGAAGTTCATTCCATGTCTAAGCA
1 TAGGCATACGAAGTTCATTCCATGTCTAAGCA
20785470 TACGAAGTTC
Statistics
Matches: 275, Mismatches: 56, Indels: 34
0.75 0.15 0.09
Matches are distributed among these distances:
157 14 0.05
158 154 0.56
159 104 0.38
160 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (159 bp):
TAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGACCAGACTAAGGGTTGCAGCAACAGGATC
GACAACACGAAGGAGAGACCGGGCTAATCCCCGACTTACGAATTATGCCTCTCCAGTCGGCTGAG
CGCCCGAACGCTCATTTCGTGGGTTGACT
Found at i:20785477 original size:26 final size:26
Alignment explanation
Indices: 20785441--20785493 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20785431 GTTGGCTTAG
*
20785441 GCATACGAAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCACTCCCA-GTCTAA
20785467 GCATACGAAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
20785493 G
1 G
20785494 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:20785890 original size:501 final size:501
Alignment explanation
Indices: 20784874--20786026 Score: 1360
Period size: 501 Copynumber: 2.3 Consensus size: 501
20784864 GTTCGATCCT
* * * * * *
20784874 CGACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGTATGCATGCTCGTTTCGTAGGTTGACTTA
1 CGACTTACGCATTCTGCCTCTCTGGTCGGCTGAGCGCATGCACGCTCGTTTCGTGGGTTGGCTTA
* * * * *
20784939 GGCTTACGGAGTTCATCCCCA-GTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAG
66 GGCATACGAAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
*
20785003 AACAAGGGTTGC-AGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCGGATCCCCGGCTTGCA
130 AACGAGGGTTGCGA-CAGTAGGATCGACAGCACGCAGGGGGGACCGGGCGGATCCCCGGCTTGCA
* * *
20785067 CATTCTGCTTCTCCGACCAGCTGAGCACCCGTACGCCCATGTCGCGCATTGGCTTAGGCATAGGG
194 CATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCCCATGTCACGCATTGGCTTAGGCATAGGG
* * * * * *
20785132 AGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGCGGGATCGACATACACAGA
259 AGTTCAATCCATGTCTAAGCCCCAGCCAAACTGAGGGTTGTGGCAGCAGGACCGACACACACAGA
* * *
20785197 GGGGGACCGGGCTAATCCCCGACTTACGAATTATGCCTCTCCAGTCGGCTCGACGCCCGAACGCT
324 GGGGGACCGGGCCAATCCCCGACTTACGAATTATGCCTCTCCAGTCGACTCAACGCCCGAACGCT
* *
20785262 CATTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCTAGTTCAAGATCAGACCGGATTAAGGT
389 CATTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTTCAAGATCAGACCGGATTAAGGG
**
20785327 TTGCAGTAACAGGATCGACAACACGCAAGGAGAGACCGGGTTGGTCCC
454 TTGCAGTAACAGGATCGACAACACGCAAGGAGAGACCGGGCCGGTCCC
* * * **
20785375 CGACTTATGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
1 CGACTTACGCATTCTGCCTCTCTGGTCGGCTGAGCGCATGCACGCTCGTTTCGTGGGTTGGCTTA
* * *
20785440 GGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCACTCCCAGTCTAAGATCAAACCAGA
66 GGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * *
20785505 TCGAGGGTTGCGACAGTAGGATC-AGCAGCATGCAGGGGGGACCGGGTC-GATCCTCGGCTTGCG
131 ACGAGGGTTGCGACAGTAGGATCGA-CAGCACGCAGGGGGGACCGGG-CGGATCCCCGGCTTGCA
* * ** * * * * * **
20785568 CATTCTGCCTCTTCGGCTGGCTGAGCGCTCGCACG-TCAGTTTCATGGGTTGGCTTAGGCATAGG
194 CATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCCCA-TGTCACGCATTGGCTTAGGCATAGG
* * *
20785632 GAGTTCAATCCATGGT-TAAGCCCTAGCCAAACTGAGGGTTGTGGCAGCAGGACCGATAGCACGC
258 GAGTTCAATCCAT-GTCTAAGCCCCAGCCAAACTGAGGGTTGTGGCAGCAGGACCGACA-CACAC
* * * * * * * *
20785696 AGAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCCTCGA-TCGATTCAATGCCTGAA
321 AGAGGGGGACCGGGCCAATCCCCGACTTACGAATTATGCCT-CTCCAGTCGACTCAACGCCCGAA
* * * *
20785760 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCATACCGGATT
385 CGCTCATTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTTC-AAGATCAGACCGGATT
* * * ** * * *
20785824 GAGGGTTGCAGTAGCAGGATCGACAGCAC-CCGGGTGGGGATCGGGCCGGTCCC
449 AAGGGTTGCAGTAACAGGATCGACAACACGCAAGG-AGAGACCGGGCCGGTCCC
* * * * *
20785877 C-AGC-TACGCATTCTACCTCTCTGGTCGGCTGAGCGCTTGCACACTCATTTCATGGGTTGGCTT
1 CGA-CTTACGCATTCTGCCTCTCTGGTCGGCTGAGCGCATGCACGCTCGTTTCGTGGGTTGGCTT
* *
20785940 AGGCATAC-AGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-
65 AGGCATACGA-AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
*
20786003 GAACCGAGGGTTGCGACAGCAGGA
129 GAA-CGAGGGTTGCGACAGTAGGA
20786027 CCAACAAAAA
Statistics
Matches: 549, Mismatches: 90, Indels: 26
0.83 0.14 0.04
Matches are distributed among these distances:
500 9 0.02
501 385 0.70
502 151 0.28
503 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (501 bp):
CGACTTACGCATTCTGCCTCTCTGGTCGGCTGAGCGCATGCACGCTCGTTTCGTGGGTTGGCTTA
GGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
ACGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACCGGGCGGATCCCCGGCTTGCACA
TTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCCCATGTCACGCATTGGCTTAGGCATAGGGAG
TTCAATCCATGTCTAAGCCCCAGCCAAACTGAGGGTTGTGGCAGCAGGACCGACACACACAGAGG
GGGACCGGGCCAATCCCCGACTTACGAATTATGCCTCTCCAGTCGACTCAACGCCCGAACGCTCA
TTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTTCAAGATCAGACCGGATTAAGGGTT
GCAGTAACAGGATCGACAACACGCAAGGAGAGACCGGGCCGGTCCC
Found at i:20785978 original size:26 final size:26
Alignment explanation
Indices: 20785942--20785994 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20785932 GTTGGCTTAG
*
20785942 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20785968 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20785994 G
1 G
20785995 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20787598 original size:26 final size:26
Alignment explanation
Indices: 20787555--20787607 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20787545 ATTGGCTTAG
* *
20787555 GCATACGGAGTT-GTTTCCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20787581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20787607 G
1 G
20787608 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20789057 original size:197 final size:195
Alignment explanation
Indices: 20788670--20789045 Score: 440
Period size: 197 Copynumber: 1.9 Consensus size: 195
20788660 GGGTTGTGGT
* *
20788670 AGCAAGATCGACAGCATGCGGATGGGGCCGGGTCGATCCCCAGCTTGCGTATTCTGCCTCTCCGG
1 AGCAAGATCGACAGCATGCGGA-GGGGCCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGA
* *** * * * *
20788735 TTGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGATTTGGCATACGGAGTTCATTCCATGTCT
65 TTGACTGAGCGCCCGCACGCTCGTTTCGTGCAATGGATTAGGCATACGAAATTCATCCCATGTCT
*
20788800 AAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGTCAGTAGGACCAG
130 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGTCAGTAGGACCAG
20788865 C
195 C
*
20788866 AGCAGGATCGACAGCATGCAGG-GGAGGACCGGG-CTGATCCCC-GACTTGCGCATTCTGCCTCT
1 AGCAAGATCGACAGCATGC-GGAGG-GG-CCGGGTC-GATCCCCAG-CTTGCGCATTCTGCCTCT
** *
20788928 CCGATTGGTTGAGCGCTCGCACGCTCGTTTCGTGCAAT-GACTTAGGCATACGAAATTCATCCCC
61 CCGATTGACTGAGCGCCCGCACGCTCGTTTCGTGCAATGGA-TTAGGCATACGAAATTCAT-CCC
* ** * **
20788992 A-GTCTTAGTGTACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCAAGGGTT
124 ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTT
20789046 GCGGTAGTAG
Statistics
Matches: 151, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
195 2 0.01
196 25 0.17
197 121 0.80
198 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (195 bp):
AGCAAGATCGACAGCATGCGGAGGGGCCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAT
TGACTGAGCGCCCGCACGCTCGTTTCGTGCAATGGATTAGGCATACGAAATTCATCCCATGTCTA
AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGTCAGTAGGACCAGC
Found at i:20789352 original size:26 final size:26
Alignment explanation
Indices: 20789316--20789368 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20789306 GTTGGCTTAG
20789316 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20789342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20789368 G
1 G
20789369 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20792191 original size:26 final size:26
Alignment explanation
Indices: 20792155--20792206 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20792145 GTTGCCTTAG
20792155 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20792181 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20792207 AATCAGATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20792316 original size:185 final size:184
Alignment explanation
Indices: 20791997--20792551 Score: 661
Period size: 185 Copynumber: 3.0 Consensus size: 184
20791987 GTTGACTTAG
* * * * * * * *
20791997 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAAGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAAATCAGATCAGATCGAGGGTTGCGACAGCAGGATCGATA
* ** * * * * **** * *
20792062 GCACGCAGGGGGGACCGGGTCGGTTCTTGGCTTAGGCATTCTGCCTCTCCGACAGACTGAGCGCC
66 GCACACAAAGGGGACCAGGCCGATCCCCAACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCC
20792127 CGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
20792181 GCATATGGAGTTCATTCCCAGTCTAAAATCAGATCAGATTGAGGGTTGCGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAAATCAGATCAGATCGAGGGTTGCGACAGCAGGATCGATA
* * *
20792246 GCACACAGAAGGGGATC-GGACC-ATTCCCTAACTTACGCATTTTGCCTCTCCGACCGACTGAGC
66 GCACACA-AAGGGGACCAGG-CCGA-TCCCCAACTTACGCATTCTGCCTCTCCGACCGACTGAGC
* * * *
20792309 GCCCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATCTTCA-GTCTAA
128 GCCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * *
20792366 ACATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAAATCAGATCAGATCGAGGGTTGCGACAGCAGGATCGATA
** *
20792431 GCACACAAAGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGCC
66 GCACACAAAGGGGACCAGGCCGATCCCCAACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCC
* * *
20792496 CGTACGC-CTGTTTCATGGGTTGGCC-TAGGCATAGGGAGTTCATTCCATGTCTAA
131 CGCACGCTC-GTTTCGTGGGTT-GCCTTAGGCATACGGAGTTCATTCCATGTCTAA
20792550 GC
1 GC
20792552 CCCAGCCAGA
Statistics
Matches: 314, Mismatches: 48, Indels: 18
0.83 0.13 0.05
Matches are distributed among these distances:
183 4 0.01
184 148 0.47
185 159 0.51
186 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAAATCAGATCAGATCGAGGGTTGCGACAGCAGGATCGATA
GCACACAAAGGGGACCAGGCCGATCCCCAACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:20792387 original size:26 final size:26
Alignment explanation
Indices: 20792341--20792391 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20792331 TTGACTTAGG
*
20792341 CATACGGAGTTCATCTTCAGTCTAAA
1 CATACGGAGTTCATCTCCAGTCTAAA
20792367 CATACGGAGTTCAT-TCCCAGTCTAA
1 CATACGGAGTTCATCT-CCAGTCTAA
20792392 GATCAGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCTCCAGTCTAAA
Found at i:20793450 original size:26 final size:26
Alignment explanation
Indices: 20793402--20793454 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20793392 GTTGACTTAG
* *
20793402 GCATACGGAGTTCATCCATAGTCTAA
1 GCATACGAAGTTCATCCACAGTCTAA
20793428 GCATACGAAGTTCATTCC-CAGTCTAA
1 GCATACGAAGTTCA-TCCACAGTCTAA
20793454 G
1 G
20793455 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCACAGTCTAA
Found at i:20794257 original size:193 final size:196
Alignment explanation
Indices: 20793873--20794257 Score: 474
Period size: 195 Copynumber: 2.0 Consensus size: 196
20793863 CTGCCTCTCT
* * * * ***
20793873 GGTCGGCTGAGCGCCCGCCCACTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTTTATGT
1 GGTCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGT
* * * *
20793938 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATGGAGGGTTGCGACAGTAGGATC
66 CT-AGCATATGGAGTTCATTCCCAATCAAAGATCAGACCAGATGGAGGGTTGCAACAGTAGGATC
* * *
20794003 GGCAGCACGCAGGGGGGGACCAGGCCGATCCCCTACTTGCGTATTCTACCTCTCCGACCGACCTC
130 GACAGCACGCA-GGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGACCTC
20794068 TTC
194 TTC
* * * *
20794071 GGTCGGTTGAGCTCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-G
1 GGTCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCAT-CCCATG
* * *
20794135 TCT-G-ATATGGAGTTCATTCTCAATCAAAGATCAGACCGGATTGAGGGTTGCAACAGTAGGATC
65 TCTAGCATATGGAGTTCATTCCCAATCAAAGATCAGACCAGATGGAGGGTTGCAACAGTAGGATC
* * * *
20794198 GACAGCATGTA-GGGGGACC-GTGTCGATCCCCGACTTGTGCATTCTACCTCTCCGACCGAC
130 GACAGCACGCAGGGGGGACCAG-GCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGAC
20794258 TGAGCACCCG
Statistics
Matches: 160, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
192 1 0.01
193 43 0.27
195 60 0.38
196 1 0.01
198 54 0.34
199 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (196 bp):
GGTCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGT
CTAGCATATGGAGTTCATTCCCAATCAAAGATCAGACCAGATGGAGGGTTGCAACAGTAGGATCG
ACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGACCTCTT
C
Found at i:20794490 original size:26 final size:26
Alignment explanation
Indices: 20794453--20794505 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20794443 GTTGGCTTAG
20794453 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
*
20794479 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
20794505 G
1 G
20794506 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:20795203 original size:26 final size:26
Alignment explanation
Indices: 20795167--20795219 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20795157 GTTGACTTAG
*
20795167 GCATACGGAGTACATCCCCAGTCTAA
1 GCATACGGAGTACATCCCCAATCTAA
* *
20795193 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTACATCCCCAATCTAA
20795219 G
1 G
20795220 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTACATCCCCAATCTAA
Found at i:20795481 original size:159 final size:158
Alignment explanation
Indices: 20795193--20795694 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 158
20795183 CCCAGTCTAA
* ** * * * ** * **
20795193 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCAGATCGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGACCAAGGGTTGCGACAACAGGACCGAC
* * * ** *
20795257 AGCACGCAGGGGGGATCGTGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTTGGCTGAGCGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCGGCCGGCTCAGCGC
20795322 CCGTACG-TCCGTTTCATGGGTTGGCTTAG
130 CCGTACGCT-CGTTTCATGGGTTGGCTTAG
* * * * * * *
20795351 GCATAGGGAGCTCATTCCATGTCTAAGCCCTAG-CCGGACCAAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCAAGGGTTGCGACAACAGGACCGAC
* * * * *
20795415 AGCACACAGAGGGGGATCGGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCG
65 AGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCGGCCGGCTCAGCG
*** * *
20795480 CCTAAACACTCGTTTCATGGGTTGACTTAG
129 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
* ** * * *
20795510 GCATACGGAGTTTATTCC-TAGTCTAAGATCGGACTAGACCAAGGGTTGCGACAACAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCAGACCAGACCAAGGGTTGCGACAACAGGACCGAC
* * * * * * * *
20795574 AGCACGTAGGGGGCACCAGGCCGAT-CCTGACTTACGCATTCTACCTCTTCGGCCGAC-CGAGTG
65 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCGGCCGGCTC-AGCG
* * *
20795637 CCCGTATGCTCGTTTCGTGGGTTGGCTTGG
129 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
20795667 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
20795695 ATACGGAGTT
Statistics
Matches: 270, Mismatches: 66, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 78 0.29
158 66 0.24
159 124 0.46
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCAAGGGTTGCGACAACAGGACCGACA
GCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCGGCCGGCTCAGCGCC
CGTACGCTCGTTTCATGGGTTGGCTTAG
Found at i:20795703 original size:26 final size:26
Alignment explanation
Indices: 20795667--20795745 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
20795657 GTTGGCTTGG
20795667 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20795693 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* * **
20795719 ACAGACAAAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20795745 G
1 G
20795746 ATCGAACCAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 44 0.94
27 3 0.06
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20795920 original size:26 final size:26
Alignment explanation
Indices: 20795890--20795941 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20795880 GTTGACTTAG
*
20795890 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20795916 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20795942 AATCAAACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20797244 original size:159 final size:158
Alignment explanation
Indices: 20796967--20797419 Score: 346
Period size: 159 Copynumber: 2.9 Consensus size: 158
20796957 CGGACCGAGG
* * ** *
20796967 GTTGTGGCAGCATGATTGGCAGCACGCAGGGGGGACCAGCCCGATCCCCGGTTTACGCATTCTAC
1 GTTGTGGCAGCAGGACTGGCAGCACGCAGGGGGGACCAGCCCGATCCCCGACTTACGCATTATAC
* * * * * * *
20797032 CTCTCCGACTGGCTGAGTGCCCACACGCCCGTTTCATGGGTTGGCTTCAGCATAGGGAGTTCATT
66 CTCTCCGACTAGCTCAGCGCCCACACGCCCATTTCATGGGTTGACTTCAGCATACGAAGTTCATT
20797097 CCATGTCTAAGCCCCAGCCAAACTGAGA
131 CCATGTCTAAGCCCCAGCCAAACTGAGA
* * ** * *
20797125 GTTGTGGCAGCGGGACTGGCAGCATGCAGAGGGGGACCAGGTCGATCCCCGACTTATGCATTATG
1 GTTGTGGCAGCAGGACTGGCAGCACGCAG-GGGGGACCAGCCCGATCCCCGACTTACGCATTATA
* * * *
20797190 CCTCTCCGGCTAGCTCAGCGCCCGA-ACGCTCATTTCGTTGGTTGACTT-AGGCATACGAAGTTC
65 CCTCTCCGACTAGCTCAGCGCCC-ACACGCCCATTTCATGGGTTGACTTCA-GCATACGAAGTTC
* ** * * *
20797253 ATTCCCA-ATCTAAG-ATCAGACCAGACCGAGG
128 ATT-CCATGTCTAAGCCCCAG-CCAAACTGAGA
*** * * * * * *
20797284 GTTACAGCAGTC-GGA-TCGACAGCACGTAGGGGGGGACCGGGCCGATCCTCGACTTACGCATTC
1 GTTGTGGCAG-CAGGACT-GGCAGCACGCA-GGGGGGACCAGCCCGATCCCCGACTTACGCATTA
* * * * * * * * *
20797347 TACCTCTCCG-GTCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTT-AGGCATACGAAGT
63 TACCTCTCCGACTAG-CTCAGCGCCCACACGCCCATTTCATGGGTTGACTTCA-GCATACGAAGT
20797410 TCATTCCATG
126 TCATTCCATG
20797420 CCAAAGCATA
Statistics
Matches: 235, Mismatches: 49, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
158 35 0.15
159 194 0.83
160 6 0.03
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
GTTGTGGCAGCAGGACTGGCAGCACGCAGGGGGGACCAGCCCGATCCCCGACTTACGCATTATAC
CTCTCCGACTAGCTCAGCGCCCACACGCCCATTTCATGGGTTGACTTCAGCATACGAAGTTCATT
CCATGTCTAAGCCCCAGCCAAACTGAGA
Found at i:20797597 original size:184 final size:182
Alignment explanation
Indices: 20797240--20797786 Score: 613
Period size: 184 Copynumber: 3.0 Consensus size: 182
20797230 GTTGACTTAG
* *
20797240 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTAC-AGCAGTC-GGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGA-CAG-CAGGATCGA
* * *
20797303 CAGCACGTAGGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTA-CCTCTCCGGTCGACTGAG
64 CAGCACGCA-GGGGGGA-CGGGCCGATCCTCG-CTTGCGCATTC-AGCCTCTCCGGTCGGCTGAG
*
20797367 CGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGCCAAA
125 CGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCAAA
* * *
20797425 GCATACGGAGTTCATTCCCAGTATAAGATCAGACTAGACCGAGGGTTACGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACA
* * * *
20797490 GCACGCAGGGGGGATCGAGCCGATCCTCGTCTTGTGCATTCAGCCTCTTC-GACTGGCTGAGCGC
66 GCACGCAGGGGGGA-CGGGCCGATCCTCG-CTTGCGCATTCAGCCTCTCCGGTC-GGCTGAGCGC
** * * * * *
20797554 CCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCTCA-GTCTAA
128 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGCCAAA
* * * * * ** * *
20797609 GCATGCAGAGTTCATTCCCAGTCTAAGATCGGACCCGACCGAAGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACA
* * *
20797674 GCACGCAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
66 GCACGCAGGGGGGAC-GGGCCGATCCTC-GCTTGCGCATTCAGCCTCTCCGGTCGGCTGAGCGCC
* * *
20797739 CGTATGC-CAATTTCGTGGGTTGGC-TAGGCATAGGGAGTTCATTCCATG
129 CGCATGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
20797787 TCTAAGCCCC
Statistics
Matches: 303, Mismatches: 49, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
182 2 0.01
183 24 0.08
184 209 0.69
185 67 0.22
186 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACA
GCACGCAGGGGGGACGGGCCGATCCTCGCTTGCGCATTCAGCCTCTCCGGTCGGCTGAGCGCCCG
CATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCAAA
Found at i:20797911 original size:158 final size:157
Alignment explanation
Indices: 20797646--20797951 Score: 391
Period size: 158 Copynumber: 1.9 Consensus size: 157
20797636 ATCGGACCCG
* * * *
20797646 ACCGAAGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCCAGCTTGCGC
1 ACCGAAGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACTAGGCCGATCCCCAGCTTGCGC
* * *
20797711 ATTCTGCCTCTCCGGTCGGCTAAGCGCCCGTATGCCAATTTCGTGGGTTGGC-TAGGCATAGGGA
66 ATTCTGCCTCTCCGGTCGGCTAAGCGCCCGTACGCCAATTTCGTGAGTTGGCTTAGGCATAGAGA
20797775 GTTCATTCCATGTCTAAGCCCCAGCTGA
131 GTTCATTCCA-GTCTAAGCCCCAGCTGA
* * * * * *
20797803 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCACATAGAGGGGGACTAGGCCGATCCTC-GATTTGC
1 ACCGAAGGTTGTGGCAGCAGGACCGACAGCACACAG-GGGGGACTAGGCCGATCCCCAG-CTTGC
* * * *** *
20797867 GCATTCTTCCTCTCCGGTCGGTTGAGCGCCCGTACGCTTGTTTCGTGAGTTGGCTTAGGCATATA
64 GCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGTACGCCAATTTCGTGAGTTGGCTTAGGCATAGA
20797932 GAGTTCATTCCAGTCTAAGC
129 GAGTTCATTCCAGTCTAAGC
20797952 ATACGGAGTT
Statistics
Matches: 126, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
157 30 0.24
158 76 0.60
159 20 0.16
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (157 bp):
ACCGAAGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACTAGGCCGATCCCCAGCTTGCGC
ATTCTGCCTCTCCGGTCGGCTAAGCGCCCGTACGCCAATTTCGTGAGTTGGCTTAGGCATAGAGA
GTTCATTCCAGTCTAAGCCCCAGCTGA
Found at i:20799127 original size:159 final size:158
Alignment explanation
Indices: 20798746--20799176 Score: 397
Period size: 159 Copynumber: 2.7 Consensus size: 158
20798736 AACATGCAGA
* * * * * *
20798746 GGGGACCAGGCTGGTCCCCGACTTGCGCATTCTACCTCTCTGG-TAGGCTGAGCGCTCGCACGCC
1 GGGGACCGGGCTAGTCCCCGACTTGCGCATTCTGCCTCTCTGGCCA-GCTGAGCGCCCGCACGCT
* * * *
20798810 CATTTTGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAACCGGACCAAGGG
65 CATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCGGACCAAGGG
*
20798875 TTGTAGCAGCGAGATCGACAGCACGCAAAG
130 TTGTAGCAGAGAGATCGACAGCAC-CAAAG
* * * * *** * * * *
20798905 TGGGACCGGG-TCGATCCCCGACTTGCGTATTATGCCTCTCCAACCGGCTCAGCGCCTGAACGCT
1 GGGGACCGGGCTAG-TCCCCGACTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCGCCCGCACGCT
* * * * * *
20798969 CATTTCGTGGGTTAACTTAGGCATATGGAGTTCGTTCCCTGTCTAAG-ATCAGACCAGG-CCTAG
65 CATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCA-ACC-GGACCAAG
* * * *
20799032 GGTTGTGGTAGTAG-GATTGACAGCA-CATAG
128 GGTTGTAGCAG-AGAGATCGACAGCACCAAAG
* *
20799062 GGAAGGATCGGGCTAGTCCCCGACTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCACCCGCACGC
1 GG--GGACCGGGCTAGTCCCCGACTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCGCCCGCACGC
** * * *
20799127 TTGTTTCGTCGGTTGGCTTAGGCATACGGGGTTCATTCCATGTCTAAGCA
64 TCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20799177 TACAGAGTTC
Statistics
Matches: 211, Mismatches: 52, Indels: 17
0.75 0.19 0.06
Matches are distributed among these distances:
157 5 0.02
158 4 0.02
159 196 0.93
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GGGGACCGGGCTAGTCCCCGACTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCGCCCGCACGCTC
ATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCGGACCAAGGGT
TGTAGCAGAGAGATCGACAGCACCAAAG
Found at i:20799186 original size:26 final size:26
Alignment explanation
Indices: 20799148--20799200 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20799138 GTTGGCTTAG
* *
20799148 GCATACGGGGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20799174 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20799200 G
1 G
20799201 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20799374 original size:26 final size:26
Alignment explanation
Indices: 20799345--20799397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20799335 GTTGGCTTAG
*
20799345 GCATACGGAGTTCGTT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20799371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20799397 G
1 G
20799398 ATCGTACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20799426 original size:197 final size:197
Alignment explanation
Indices: 20799078--20799454 Score: 522
Period size: 197 Copynumber: 1.9 Consensus size: 197
20799068 ATCGGGCTAG
* * * ** *
20799078 TCCCCGACTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCACCCGCACGCTTGTTTCGTCGGTTGG
1 TCCCCGACTTGCGCATGCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCATTTCATCGGTTGG
* * * *
20799143 CTTAGGCATACGGGGTTCATTCCATGTCTAAGCATACAGAGTTCTTTCCCAGTCTAAGATTGGAT
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
** **
20799208 CGGACCAGGGGTTGTGGTAGCAGGACCAGCAGCAGGATCGGCAGCACGCAGGACGGGACCGGACC
131 CGGACCAGGGGTTACGGTAGCAGGACCAGCAGCAGGATCAACAGCACGCAGGACGGGACCGGACC
20799273 GA
196 GA
* ** ** * *
20799275 TCCCCGACTTGCGTATGCTGCCTCTCCGACTGGCTGAGCGGCCGCATGCTCATTTCATGGGTTGG
1 TCCCCGACTTGCGCATGCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCATTTCATCGGTTGG
* * *
20799340 CTTAGGCATACGGAGTTCGTTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGTAC
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
20799405 CGGA-CAGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCAACAGCACGCA
131 CGGACCAG-GGGTTACGGTAGCAGGACCAGCAGCAGGATCAACAGCACGCA
20799455 AAGAGGATCG
Statistics
Matches: 155, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
196 3 0.02
197 152 0.98
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (197 bp):
TCCCCGACTTGCGCATGCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCATTTCATCGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCAGGGGTTACGGTAGCAGGACCAGCAGCAGGATCAACAGCACGCAGGACGGGACCGGACC
GA
Found at i:20799744 original size:158 final size:160
Alignment explanation
Indices: 20799513--20799886 Score: 398
Period size: 159 Copynumber: 2.4 Consensus size: 160
20799503 ACTGAGCGGT
* * * ***
20799513 CGCACGCTCGTTTCGTGGGTTGACATAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATTGGACC
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACC
* * **
20799576 AGACCGAGGGTTGTGATAGTAGGATCGACAGCACGCAG-GGGGGACCAGGTCGATCCCTGGCTTG
65 AGACCAAGGGTTGTGATAGTAGGACCGACAGCACGCAGAGGGGGACCAGACCGATCCCTGGCTTG
* * * ** *
20799640 CATATTCTGCCTCTCC-AGCTGGTTAAGTGCT
130 CACATTCTGCCTCTCCGA-CCGGCTAAGCACC
* * * * *
20799671 TGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGA-CG
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCA
* * * * * * *
20799735 GACCAAGGGTTGTGGTAGTGGGACCGATAGCACGTAGAGGGGGAGCTGACCGATCCCTGGCTTGT
66 GACCAAGGGTTGTGATAGTAGGACCGACAGCACGCAGAGGGGGACCAGACCGATCCCTGGCTTGC
* *
20799800 GCATTCTGCCTCTCCGACCGGCTGAGCACC
131 ACATTCTGCCTCTCCGACCGGCTAAGCACC
* * *
20799830 CGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCA
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20799887 TACGGAGTTC
Statistics
Matches: 176, Mismatches: 36, Indels: 7
0.80 0.16 0.03
Matches are distributed among these distances:
157 3 0.02
158 78 0.44
159 94 0.53
160 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (160 bp):
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCA
GACCAAGGGTTGTGATAGTAGGACCGACAGCACGCAGAGGGGGACCAGACCGATCCCTGGCTTGC
ACATTCTGCCTCTCCGACCGGCTAAGCACC
Found at i:20799894 original size:26 final size:26
Alignment explanation
Indices: 20799858--20799910 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20799848 GTTGGCTTAG
20799858 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
20799884 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
20799910 G
1 G
20799911 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:20800578 original size:26 final size:27
Alignment explanation
Indices: 20800549--20800603 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 27
20800539 GTTGACTTAG
20800549 GCATACG-GAGTTCA-TCCCTAGTCTAA
1 GCATACGCGAGTTCATTCCC-AGTCTAA
20800575 GCATACGCGAGTTCATTTCCCAGTCTAA
1 GCATACGCGAGTTCA-TTCCCAGTCTAA
20800603 G
1 G
20800604 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 7 0.27
27 7 0.27
28 8 0.31
29 4 0.15
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (27 bp):
GCATACGCGAGTTCATTCCCAGTCTAA
Found at i:20801081 original size:26 final size:26
Alignment explanation
Indices: 20801052--20801104 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20801042 GTTGGCTTAG
*
20801052 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCAAT-TCTAA
*
20801078 GCATATAGAGTTCATTCCAATTCTAA
1 GCATACAGAGTTCATTCCAATTCTAA
20801104 G
1 G
20801105 ATAAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAATTCTAA
Found at i:20801634 original size:26 final size:26
Alignment explanation
Indices: 20801604--20801656 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20801594 GTTCGCTGAG
*
20801604 GCATACGTAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20801630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20801656 G
1 G
20801657 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20802364 original size:26 final size:26
Alignment explanation
Indices: 20802328--20802380 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20802318 GTTGACTTAG
*
20802328 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
20802354 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20802380 G
1 G
20802381 ATTGGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20802706 original size:26 final size:26
Alignment explanation
Indices: 20802670--20802722 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20802660 GTTGGCTTGG
*
20802670 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
20802696 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
20802722 G
1 G
20802723 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:20804211 original size:159 final size:159
Alignment explanation
Indices: 20803970--20804371 Score: 370
Period size: 159 Copynumber: 2.5 Consensus size: 159
20803960 CCCGGCTTGT
** * * ** * * * *
20803970 GCATTCTGTCTCTCCTACCGGCTGAGCACCCGTACGC-CTGTTTCGTGGGTTGGCTTAAGCATAG
1 GCATTCTACCTCTCCGACCGACTGAGCACCCACACGCTC-ATTTCATGGGTTGGCTTAGGCATAC
* * * * *
20804034 GGAGTTCATTCAATGTCTAAGCCTC-AACCAGACCGAGGGTTGTGGCAGCGGGAGT-GGCAGCAC
65 GGAGTTCATTCCACGTCTAAGCATCGAACCAGACCGAGGGTTGTGGCAGCAGGA-TCGACAGCAC
* * *
20804097 ACAGAGTGGGACCGGGCT-GATC-CCTGACTTGC
129 ACAG-GGGGGACCGGGCTAG-TCTCCAG-CTTAC
* ** * * *
20804129 GCATTCTACCTCTTCGACCTCCTGAGCGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACG
1 GCATTCTACCTCTCCGACCGACTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACG
* * * * **
20804194 AAGTTCATTCC-CAGTCTAAG-ATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCATG
66 GAGTTCATTCCAC-GTCTAAGCATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACA
*
20804257 CAGGGGGGATCGGGCTAGTCTCCAGCTTAC
130 CAGGGGGGACCGGGCTAGTCTCCAGCTTAC
* ** * *
20804287 GTATTCTACCTCTCCGGTCGACTGAGCACCCACACTCTCATTTCGT-GGTTGGCTTAGGCATACG
1 GCATTCTACCTCTCCGACCGACTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACG
20804351 GAGTTCATTCCACGTCTAAGC
66 GAGTTCATTCCACGTCTAAGC
20804372 GTACGGAGTT
Statistics
Matches: 195, Mismatches: 40, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
157 35 0.18
158 56 0.29
159 103 0.53
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (159 bp):
GCATTCTACCTCTCCGACCGACTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCACGTCTAAGCATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
AGGGGGGACCGGGCTAGTCTCCAGCTTAC
Found at i:20804383 original size:26 final size:26
Alignment explanation
Indices: 20804347--20804396 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20804337 GGCTTAGGCA
20804347 TACGGAGTTCATT-CCACGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
20804373 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
20804397 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:20804584 original size:26 final size:26
Alignment explanation
Indices: 20804554--20804606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20804544 GTTGACTTAG
*
20804554 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
*
20804580 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
20804606 G
1 G
20804607 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:20805064 original size:26 final size:26
Alignment explanation
Indices: 20805035--20805105 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 26
20805025 AGGCATTCGA
20805035 AGTTCATTCCATGTCTAAGCATACGG
1 AGTTCATTCCATGTCTAAGCATACGG
*
20805061 AGTTCACTCCATGTCTAAGCATACGG
1 AGTTCATTCCATGTCTAAGCATACGG
20805087 AGTTCATTCCCA-GTCTAAG
1 AGTTCATT-CCATGTCTAAG
20805106 ATCAGATCGA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
26 39 0.93
27 3 0.07
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (26 bp):
AGTTCATTCCATGTCTAAGCATACGG
Found at i:20805579 original size:184 final size:184
Alignment explanation
Indices: 20805270--20805618 Score: 493
Period size: 184 Copynumber: 1.9 Consensus size: 184
20805260 AGGCATACGA
* * * *
20805270 AGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGAGTTACGGTAACAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATTAGACCAGATCAAGAGTTACGGCAACAAGATCGACAGCACGCAG
* * * *
20805335 GGGGGACTGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCT
66 GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGCC
20805400 CATTTCATGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTATAAGCATATGG
131 CATTTCATGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTATAAGCATATGG
* * * * * *
20805454 AGTTCATTCCCAGTCTAAGATTAGATCAGATCGAGGGTTGCGGCAGCAAGATCGATAGCTA-GCA
1 AGTTCATTCCCAGTCTAAGATTAGACCAGATCAAGAGTTACGGCAACAAGATCGACAGC-ACGCA
** *
20805518 GGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGTTGAGTGCCCGCACGC
65 GGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGC
* * * *
20805583 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
130 CCATTTCATGGGTTGACTTAGGCACACGGAGTTCAT
20805619 TCTGTGTCTA
Statistics
Matches: 143, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
184 142 0.99
185 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATTAGACCAGATCAAGAGTTACGGCAACAAGATCGACAGCACGCAG
GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGCC
CATTTCATGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTATAAGCATATGG
Found at i:20807187 original size:26 final size:26
Alignment explanation
Indices: 20807157--20807235 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
20807147 GTTGGCTTAG
20807157 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
20807183 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
20807209 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
20807235 G
1 G
20807236 AGTTTGTGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20808295 original size:159 final size:159
Alignment explanation
Indices: 20807932--20808362 Score: 451
Period size: 159 Copynumber: 2.7 Consensus size: 159
20807922 CCCAGTCTAA
* **
20807932 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTATGGCAGCAGGATCGACA
* * * * * * **
20807997 GCACGTAGGGGGGACTGGGTCGATCCCCGGCTT-ACGTATTCTGCATC-TCCGACCGGTTGAGTG
66 GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGA-GCATTCTGCCTCTTCAGACCGGTTCAGCA
* *
20808060 CCCGCACGCCTGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCCTATTTCGTGGGTTGACTTAG
* * * ** * * *
20808090 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGA-CCGGATCGAGGGTTATGGCAGCAGGATCGA
* * * * *
20808153 CAGCACGCAGAAGGGGACCGGGCCAATCCCCGGCTTGAGCATTATGCCTCTTCAG-TCGGTTCAG
64 CAGCACGCAG-GGGGGACTGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTTCAGACCGGTTCAG
*
20808217 CACCCGCACG-CTCATTTCGTGGGTTGACTTAT
128 CACCCGCACGCCT-ATTTCGTGGGTTGACTTAG
* * * * *
20808249 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGATCAAGGGTTATGGGAGCAAGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTATGGCAGCAGGATCGACA
* * *
20808314 GCACGCAGGGCGGGACTAGGCCGATCCCTGGCTTGTGCATTCTGCCTCT
66 GCACGCAGGG-GGGACTGGGCCGATCCCCGGCTTGAGCATTCTGCCTCT
20808363 CCGGGGAGCT
Statistics
Matches: 217, Mismatches: 47, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 57 0.26
159 147 0.68
160 8 0.04
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTATGGCAGCAGGATCGACA
GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTTCAGACCGGTTCAGCAC
CCGCACGCCTATTTCGTGGGTTGACTTAG
Found at i:20808437 original size:26 final size:26
Alignment explanation
Indices: 20808408--20808460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20808398 GTTGGCTTAG
*
20808408 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
*
20808434 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
20808460 G
1 G
20808461 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTGTCTAA
Done.