Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 107 of 125
Found at i:20809471 original size:159 final size:159
Alignment explanation
Indices: 20809293--20809657 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 159
20809283 CCATATACTT
* *
20809293 ATTTCGTGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGT
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGT
**** * * * *
20809358 TGTGGTAGCCGAACCGACAGCACGCA-GAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGC
66 TGCCACAGCAGAACCGACAGCACACAGGA-GGGGACCGGGTCGATCCCCGACTTACGCATTATGC
* * * *
20809422 CTCTTTG-GCTGGCTCAGTGCCCGCACGCTC
130 CTCTCTGATC-GACTCAGCGCCCGCACGCTC
* ** * * ***** *
20809452 GTTTCGTGGGTTAACTTAGGCATATGAAGTTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGG
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGG
* * * * *
20809516 TTGCCACAGCAGGATCTACAGCACACAGGAGGGGACCGGGTCGATCCCTGACTTACGCATTCTGC
65 TTGCCACAGCAGAACCGACAGCACACAGGAGGGGACCGGGTCGATCCCCGACTTACGCATTATGC
*
20809581 CTCTCTGATCGACTGAGCGCCCGCACGCTC
130 CTCTCTGATCGACTCAGCGCCCGCACGCTC
*
20809611 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGC
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20809658 ATATAGAGTT
Statistics
Matches: 165, Mismatches: 37, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
158 3 0.02
159 156 0.95
160 6 0.04
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGT
TGCCACAGCAGAACCGACAGCACACAGGAGGGGACCGGGTCGATCCCCGACTTACGCATTATGCC
TCTCTGATCGACTCAGCGCCCGCACGCTC
Found at i:20817072 original size:26 final size:26
Alignment explanation
Indices: 20817036--20817088 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20817026 GTTGACTTAG
20817036 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
20817062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20817088 G
1 G
20817089 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20817391 original size:159 final size:159
Alignment explanation
Indices: 20817062--20817565 Score: 414
Period size: 159 Copynumber: 3.2 Consensus size: 159
20817052 CCCAGTCTAA
** * * * * * *
20817062 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTG-AGAGTTGCGACAACAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCCATCAGACCGAAG-GTTGCGGCAGCAAGAACGA
* * * * * * * * * * **
20817125 CAGCATGCAAGAGGGATCGGACTGATCC-CTGGTTTGCGCATTCTGCC-TCTCCGACTGGCTGAG
64 CAGCACGCAGGAAGGACCGGGCTGATCCTC-AGCTTGTGCATTATGCCTTCTTCGACCAGCTGAG
* * * *
20817188 CACCCACACACCCATTTCGTGAGTTGGCTTAG
128 CGCCCACACACTCGTTTCGTGGGTTGGCTTAG
* * * * *
20817220 GCATAGGGAGTTCATTCCATGTCTAAG-TCCCAGTCAGATCGAAGGTTGTGGCAGCGAGAACGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCCCA-TCAGACCGAAGGTTGCGGCAGCAAGAACGAC
* * * *
20817284 AGCACGCA-GAAGGGGACCGGGCTGATCC-CTGACTTGTGCATTATGGC-TCTTCGACCTGCTTA
65 AGCACGCAGGAA--GGACCGGGCTGATCCTCAG-CTTGTGCATTATGCCTTCTTCGACCAGCTGA
* * *
20817346 GGGCCCACACACTCGTTTCATGGGTTGACTTAG
127 GCGCCCACACACTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
20817379 GCATACAGAGTTCATTCCCA-ATCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCCATCAGACCGAAGGTTGCGGCAGCAAGAACGAC
* * * * *
20817443 AGCACGCATGGAAGGATCGGGCTGATCCTCAGCTTGTGCATTCTGCCTTTTTTGGCCAGCTGAGC
65 AGCACGCA-GGAAGGACCGGGCTGATCCTCAGCTTGTGCATTATGCCTTCTTCGACCAGCTGAGC
* *
20817508 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 GCCCACACACTCGTTTCGTGGGTTGGCTTAG
20817539 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20817566 CATACGGAGT
Statistics
Matches: 272, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 8 0.03
158 48 0.18
159 146 0.54
160 67 0.25
161 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCCCATCAGACCGAAGGTTGCGGCAGCAAGAACGACA
GCACGCAGGAAGGACCGGGCTGATCCTCAGCTTGTGCATTATGCCTTCTTCGACCAGCTGAGCGC
CCACACACTCGTTTCGTGGGTTGGCTTAG
Found at i:20817935 original size:26 final size:26
Alignment explanation
Indices: 20817905--20817957 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20817895 GTTGACTTAG
20817905 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20817931 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20817957 G
1 G
20817958 ATTGGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20819514 original size:10 final size:9
Alignment explanation
Indices: 20819499--20819564 Score: 84
Period size: 9 Copynumber: 7.7 Consensus size: 9
20819489 TACTATGCTT
*
20819499 AAAAAAATG
1 AAAAAAATC
20819508 AAAAAAATC
1 AAAAAAATC
20819517 AAAAAAATC
1 AAAAAAATC
20819526 -AAAAAATC
1 AAAAAAATC
20819534 -AAAAAATC
1 AAAAAAATC
*
20819542 -AAAAAATG
1 AAAAAAATC
*
20819550 AAAAAAATG
1 AAAAAAATC
20819559 AAAAAA
1 AAAAAA
20819565 GAAAAAGTGA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
8 23 0.43
9 31 0.57
ACGTcount: A:0.79, C:0.06, G:0.05, T:0.11
Consensus pattern (9 bp):
AAAAAAATC
Found at i:20819529 original size:16 final size:17
Alignment explanation
Indices: 20819499--20819564 Score: 89
Period size: 17 Copynumber: 3.9 Consensus size: 17
20819489 TACTATGCTT
*
20819499 AAAAAAATGAAAAAAATC
1 AAAAAAAT-CAAAAAATC
20819517 AAAAAAATCAAAAAATC
1 AAAAAAATCAAAAAATC
*
20819534 -AAAAAATCAAAAAATG
1 AAAAAAATCAAAAAATC
*
20819550 AAAAAAATGAAAAAA
1 AAAAAAATCAAAAAA
20819565 GAAAAAGTGA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
16 15 0.34
17 21 0.48
18 8 0.18
ACGTcount: A:0.79, C:0.06, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAAAAATCAAAAAATC
Found at i:20819578 original size:9 final size:8
Alignment explanation
Indices: 20819500--20819578 Score: 79
Period size: 8 Copynumber: 9.6 Consensus size: 8
20819490 ACTATGCTTA
20819500 AAAAAATG
1 AAAAAATG
*
20819508 AAAAAAATCA
1 -AAAAAAT-G
*
20819518 AAAAAATC
1 AAAAAATG
*
20819526 AAAAAATC
1 AAAAAATG
*
20819534 AAAAAATC
1 AAAAAATG
20819542 AAAAAATG
1 AAAAAATG
20819550 AAAAAAATG
1 -AAAAAATG
20819559 AAAAAA-G
1 AAAAAATG
*
20819566 AAAAAGTG
1 AAAAAATG
20819574 AAAAA
1 AAAAA
20819579 GGAGGGTTCA
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
7 6 0.10
8 35 0.56
9 22 0.35
ACGTcount: A:0.77, C:0.05, G:0.08, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:20820648 original size:42 final size:42
Alignment explanation
Indices: 20820574--20820749 Score: 210
Period size: 42 Copynumber: 4.1 Consensus size: 42
20820564 ATGATTGTCA
* *
20820574 AGGAGCAATTTACTTT-CCAAAGTCGTTGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCCAAAGTCGTGGAGCCTCTGTTTAG
* *
20820615 ATGAGCAATTTACTTTCCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCCAAAGTCGTGGAGCCTCTGTTTAG
* * * * *
20820657 AGGAGCAATTTATTTTTCCAAAGTCGTTGAGCCTCTGATCAG
1 AGGAGCAATTTACTTTCCCAAAGTCGTGGAGCCTCTGTTTAG
* * *
20820699 AGGAGCCATTTATGTTTCTCAAAGTCGTTGAGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTTCCCAAAGTCG-TG-GAGCCTCTGTTTAG
20820744 AGGAGC
1 AGGAGC
20820750 TTTGATAAAA
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
41 15 0.13
42 70 0.61
43 11 0.10
44 1 0.01
45 18 0.16
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.34
Consensus pattern (42 bp):
AGGAGCAATTTACTTTCCCAAAGTCGTGGAGCCTCTGTTTAG
Found at i:20820683 original size:84 final size:86
Alignment explanation
Indices: 20820574--20820749 Score: 241
Period size: 84 Copynumber: 2.1 Consensus size: 86
20820564 ATGATTGTCA
* * * *
20820574 AGGAGCAATTTACTTTCCAAAGTCGTTGTGCCTCTGTTTAGATGAGCAATTTA-CTTTCCCAAAG
1 AGGAGCAATTTACTTTCCAAAGTCGTTGAGCCTCTGATCAGAGGAGCAATTTATCTTTCCCAAAG
*
20820638 TCG-TG-GTGCCTCTGTTTAG
66 TCGTTGAGAGCCTCTGTTTAG
* * * *
20820657 AGGAGCAATTTATTTTTCCAAAGTCGTTGAGCCTCTGATCAGAGGAGCCATTTATGTTTCTCAAA
1 AGGAGCAATTTA-CTTTCCAAAGTCGTTGAGCCTCTGATCAGAGGAGCAATTTATCTTTCCCAAA
20820722 GTCGTTGAGAGCCTCTGTTTAG
65 GTCGTTGAGAGCCTCTGTTTAG
20820744 AGGAGC
1 AGGAGC
20820750 TTTGATAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
83 12 0.15
84 35 0.44
85 12 0.15
86 2 0.03
87 19 0.24
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.34
Consensus pattern (86 bp):
AGGAGCAATTTACTTTCCAAAGTCGTTGAGCCTCTGATCAGAGGAGCAATTTATCTTTCCCAAAG
TCGTTGAGAGCCTCTGTTTAG
Found at i:20820962 original size:6 final size:6
Alignment explanation
Indices: 20820953--20821024 Score: 87
Period size: 6 Copynumber: 12.2 Consensus size: 6
20820943 TTTCTCTTCA
*
20820953 TTTTAT TTTTA- TTTTAT TTTTAT TTTGTA- TTTTACA TTTTA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT TTTTA-T TTTTAT TTTTAT
*
20821000 TTTTAT TTTTAT TTTTAT TATTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT T
20821025 ATTTTATATA
Statistics
Matches: 60, Mismatches: 1, Indels: 10
0.85 0.01 0.14
Matches are distributed among these distances:
5 12 0.20
6 41 0.68
7 7 0.12
ACGTcount: A:0.19, C:0.01, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:20820991 original size:36 final size:35
Alignment explanation
Indices: 20820951--20821018 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 35
20820941 TTTTTCTCTT
20820951 CATTTTATTTT-TATTTTATTTTTATTTTGTATTTTA
1 CATTTTATTTTAT-TTTTATTTTTATTTT-TATTTTA
20820987 CATTTTATTTTATTTTTATTTTTATTTTTATT
1 CATTTTATTTTATTTTTATTTTTATTTTTATT
20821019 ATTATTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
35 4 0.13
36 26 0.84
37 1 0.03
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.76
Consensus pattern (35 bp):
CATTTTATTTTATTTTTATTTTTATTTTTATTTTA
Found at i:20821016 original size:30 final size:31
Alignment explanation
Indices: 20820952--20821031 Score: 105
Period size: 30 Copynumber: 2.6 Consensus size: 31
20820942 TTTTCTCTTC
20820952 ATTTTAT--TTTTATTTTATTTTTATTTTGT
1 ATTTTATCATTTTATTTTATTTTTATTTTGT
20820981 ATTTTA-CATTTTATTTTATTTTTATTTT-T
1 ATTTTATCATTTTATTTTATTTTTATTTTGT
*
20821010 ATTTTTATTATTATTATTTTAT
1 A-TTTTATCATT-TTATTTTAT
20821032 ATATGTATAT
Statistics
Matches: 45, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
29 8 0.18
30 25 0.56
31 3 0.07
32 9 0.20
ACGTcount: A:0.21, C:0.01, G:0.01, T:0.76
Consensus pattern (31 bp):
ATTTTATCATTTTATTTTATTTTTATTTTGT
Found at i:20821203 original size:19 final size:21
Alignment explanation
Indices: 20821161--20821208 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
20821151 ATTTATGTAA
*
20821161 TTATCTGTTATTTAATTTTAAT
1 TTATCTGTTAATT-ATTTTAAT
20821183 TTATCTGTTAATT-TTTT-AT
1 TTATCTGTTAATTATTTTAAT
20821202 TTATCTG
1 TTATCTG
20821209 ATTTATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 9 0.36
20 4 0.16
22 12 0.48
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (21 bp):
TTATCTGTTAATTATTTTAAT
Found at i:20821216 original size:20 final size:20
Alignment explanation
Indices: 20821170--20821217 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
20821160 ATTATCTGTT
*
20821170 ATTTAATTTTAATTTATCTG
1 ATTTATTTTTAATTTATCTG
* *
20821190 -TTAATTTTTTATTTATCTG
1 ATTTATTTTTAATTTATCTG
20821209 ATTTATTTT
1 ATTTATTTT
20821218 AGTTTGATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (20 bp):
ATTTATTTTTAATTTATCTG
Found at i:20821857 original size:26 final size:26
Alignment explanation
Indices: 20821821--20821871 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20821811 GTTGACTTAG
20821821 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20821847 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
20821872 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20823047 original size:26 final size:26
Alignment explanation
Indices: 20823018--20823070 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20823008 GGCTCAAACT
*
20823018 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
20823044 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
20823070 C
1 C
20823071 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:20824233 original size:26 final size:26
Alignment explanation
Indices: 20824204--20824253 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20824194 CCGGTCCGAT
20824204 CTTAGAC-TGGGAATGAACTCCGTAGG
1 CTTAGACAT-GGAATGAACTCCGTAGG
20824230 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
20824254 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTAGG
Found at i:20824585 original size:159 final size:158
Alignment explanation
Indices: 20824227--20824669 Score: 406
Period size: 159 Copynumber: 2.8 Consensus size: 158
20824217 TGAACTCCGT
* *
20824227 AGGCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCT
1 AGGCTTAGACATGGAATGAACTCCCG-ATGCCTAAGCCAACCCACGAAATGAGCGTGCAGACGCT
* * **
20824291 CAACCGACCGGAGAGGCAGAATACACAAGCCGAGGATCGGCCCGGTCCCCCTTACGTGCTGTCAA
65 CAACCGACCGGAGAGACAGAATACACAAGCCGAGGATCGGCCCGATCCCCCTTACGTGCTACCAA
** * *
20824356 TCTTGCTATCGCAACCCTCGGTCTGATCC
130 TCCCGCTATCACAACCCTCGGTCCGATCC
** * ** ** * *
20824385 AATCTTAGACAGGGAATGAACTCCATATGCCTAAGTTAACCCACGAAATGAGCGTTCAGACGCTG
1 AGGCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAACCCACGAAATGAGCGTGCAGACGCTC
* * ** * * * * * *
20824450 AGCTGGTCGGAGAGACATAATGCACAAGTCGAGGATCGGCTCGATCCCCCTCTGCGTGCTACCGA
66 AACCGACCGGAGAGACAGAATACACAAGCCGAGGATCGGCCCGATCCCCCT-TACGTGCTACCAA
* * **
20824515 TCCCGTTGTCACAACCCTCGGTCCGATTG
130 TCCCGCTATCACAACCCTCGGTCCGATCC
* * * *
20824544 GGGCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAACCCACGAAACGGGCGTGC-GAGTGCT
1 AGGCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAACCCACGAAATGAGCGTGCAGA-CGCT
* * * * * * * * * *
20824608 CAGCCGGCCAGAGAGGCAGAATGCGCAAGCC-AGGGATTGACTCGATCCCCCTTATGTGCTAC
65 CAACCGACCGGAGAGACAGAATACACAAGCCGA-GGATCGGCCCGATCCCCCTTACGTGCTAC
20824670 TGATCCTGCT
Statistics
Matches: 224, Mismatches: 57, Indels: 8
0.78 0.20 0.03
Matches are distributed among these distances:
158 104 0.46
159 120 0.54
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
AGGCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAACCCACGAAATGAGCGTGCAGACGCTC
AACCGACCGGAGAGACAGAATACACAAGCCGAGGATCGGCCCGATCCCCCTTACGTGCTACCAAT
CCCGCTATCACAACCCTCGGTCCGATCC
Found at i:20824734 original size:26 final size:26
Alignment explanation
Indices: 20824705--20824757 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20824695 CCGATATGAT
20824705 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
20824731 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
20824757 C
1 C
20824758 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:20824950 original size:26 final size:26
Alignment explanation
Indices: 20824912--20824964 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20824902 CTAGTTTGAT
20824912 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20824938 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20824964 C
1 C
20824965 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20826190 original size:26 final size:26
Alignment explanation
Indices: 20826161--20826216 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
20826151 CTGATCCGAT
20826161 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20826187 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20826213 CTTA
1 CTTA
20826217 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20826691 original size:26 final size:26
Alignment explanation
Indices: 20826662--20826717 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
20826652 CCGATCCGAT
* *
20826662 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATAAACTCCATATG
*
20826688 CTTAGATTGGGGATAAACTCCATATG
1 CTTAGATTGGGAATAAACTCCATATG
20826714 CTTA
1 CTTA
20826718 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATAAACTCCATATG
Found at i:20826909 original size:26 final size:26
Alignment explanation
Indices: 20826871--20826923 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20826861 CCAGTTTGAT
20826871 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20826897 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20826923 C
1 C
20826924 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20827270 original size:157 final size:157
Alignment explanation
Indices: 20826896--20827303 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 157
20826886 AACTCCGTAT
* * *
20826896 GCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACAT-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAG
* * **
20826961 CTGGTCGGAGAGGTAGAATGCACAAGCCGGGGACCGGCCCGATCCCCTCCTACATGCTATCGATC
65 C-CGTCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCGATCCCCTCCTACATGCTATCGATC
* *
20827026 CTGCTATTACAACCCTCAGTCTGATCTGA
129 CCGCTATTACAACCCTCAGTCCGATCTGA
* * * ** * * * * *
20827055 TCTTAGACTAGGAATGAACTTCGTATGCCTAAATCAACTCACGAAATGAGCGTTCGAGCGTTGAG
1 GCTTAGAC-ATGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAG
* * * * * * *
20827120 CCAGTCGGAGAGGCATAATACGTAAGCCGGGGATCGGCTCGAT-CCCTCTCTTCGTGCTGTC-AG
65 CC-GTCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCGATCCCCTC-CTACATGCTATCGA-
* *
20827183 TCCCGCTGTT-CAACCCTCGGTCCGA-CTGA
127 TCCCGCTATTACAACCCTCAGTCCGATCTGA
* * *
20827212 GGCTTAGACATGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGAGCGCTCAG
1 -GCTTAGACATGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAG
20827277 CCGATCGGAGAGGCAGAATGCGTAAGC
65 CCG-TCGGAGAGGCAGAATGCGTAAGC
20827304 TGAAGACCGA
Statistics
Matches: 200, Mismatches: 43, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 71 0.35
158 26 0.13
159 101 0.50
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGC
CGTCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCGATCCCCTCCTACATGCTATCGATCCC
GCTATTACAACCCTCAGTCCGATCTGA
Found at i:20827401 original size:26 final size:26
Alignment explanation
Indices: 20827372--20827423 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20827362 TGGTCTGATT
*
20827372 TTAGATTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
*
20827398 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
20827424 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:20827585 original size:26 final size:26
Alignment explanation
Indices: 20827556--20827605 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20827546 CCGGTCTGAT
20827556 CTTAGAC-TGGGAATGAACTCCGTAAG
1 CTTAGACAT-GGAATGAACTCCGTAAG
*
20827582 CTTAGACATGGAATGAACTTCGTA
1 CTTAGACATGGAATGAACTCCGTA
20827606 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTAAG
Found at i:20827660 original size:185 final size:185
Alignment explanation
Indices: 20827213--20827691 Score: 511
Period size: 185 Copynumber: 2.6 Consensus size: 185
20827203 TCCGACTGAG
* * * * * * *
20827213 GCTTAGACAT-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGTGTTCGAGCGCTCAG
* * * ** * **
20827277 CCGATCGGAGAGGCAGAATGCGTAAGCTGAAGACCGACCCGGT-CCTCCCTGCGTGCTGCTTATC
66 CCGATCGGAGAGGCAGAATGCGTAAGCTGAGGATCGACCCAGTCCCTCCCAACGAGCTGCCAATC
* * * * * *
20827341 TTGCTACCACAACCTTCGATCTGGTCTGATTTTAGATTGGGAATGAACTCTGTAT
131 CTGCTACCACAACCTTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAA
* * * * * *
20827396 GCTTAGAC-TGGGGATGAAC-TCTGTATGCCTAAGTAAACCCATTAAATGAGCGTGT-GGGCACT
1 GCTTAGACAT-GGAATGAACTTC-GTATGCCTAAGTCAACCCATGAAATGAGTGT-TCGAGCGCT
* * *
20827458 CAGCCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCAGTCCCTCCCAACGAGCTGCCA
63 CAGCCGATCGGAGAGGCAGAATGCGTAAGCTGAGGATCGACCCAGTCCCTCCCAACGAGCTGCCA
** * *
20827523 ATCCTGCTGTCGCAACCCTT-GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAA
128 ATCCTGCTACCACAA-CCTTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAA
* * *
20827581 GCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGTGTTCGAGTGTTGAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGTGTTCGAGCGCTCAG
* * * *
20827646 CCAATCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCAGTCCC
66 CCGATCGGAGAGGCAGAATGCGTAAGCTGAGGATCGACCCAGTCCC
20827692 CCTCTGTGTT
Statistics
Matches: 237, Mismatches: 50, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
182 1 0.00
183 9 0.04
184 76 0.32
185 144 0.61
186 7 0.03
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.22
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGTGTTCGAGCGCTCAG
CCGATCGGAGAGGCAGAATGCGTAAGCTGAGGATCGACCCAGTCCCTCCCAACGAGCTGCCAATC
CTGCTACCACAACCTTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAA
Found at i:20828295 original size:26 final size:26
Alignment explanation
Indices: 20828244--20828296 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20828234 GGCTCAAACT
*
20828244 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
20828270 CTTAGACTAGGG-ATGAACT-TCATATG
1 CTTAGACT-GGGAATGAACTCT-ATATG
20828296 C
1 C
20828297 CTAAGTTGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:20828491 original size:26 final size:26
Alignment explanation
Indices: 20828453--20828505 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20828443 CTGGTCCGAT
20828453 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20828479 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
20828505 C
1 C
20828506 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20828959 original size:26 final size:26
Alignment explanation
Indices: 20828930--20828980 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20828920 CCAATCCGAT
20828930 CTTAGACAGGAAATGAACTCCGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
* **
20828956 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACAGGAAATGAACTCCGTAT
20828981 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGAAATGAACTCCGTATG
Found at i:20829564 original size:26 final size:26
Alignment explanation
Indices: 20829526--20829604 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
20829516 GGCTCAACCA
*
20829526 CTTAGAC-TGGGAATAAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20829552 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20829578 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20829604 C
1 C
20829605 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20829937 original size:25 final size:24
Alignment explanation
Indices: 20829888--20829937 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
20829878 CTCGGTTCGA
*
20829888 TCTGATCTTAGACTGGGAATGAAC
1 TCTGATCTTAGACTGGGAATAAAC
*
20829912 TCTGATGCTTTGACTGGGGAA-AAAC
1 TCTGAT-CTTAGACT-GGGAATAAAC
20829937 T
1 T
20829938 TCGTATGCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 6 0.27
25 11 0.50
26 5 0.23
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (24 bp):
TCTGATCTTAGACTGGGAATAAAC
Found at i:20830382 original size:159 final size:156
Alignment explanation
Indices: 20830127--20830703 Score: 482
Period size: 159 Copynumber: 3.6 Consensus size: 156
20830117 AACTCCGTAT
* * * *
20830127 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCATTCA
* * * * *
20830191 GCTGATCGGAGAGGTAAAATGGGCAAGCCGGGGATCGACTCGATTCCCCTTTGCGTCTTGTCGGT
65 GCAGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGC-CGA-TCCCCTTTGCGTC-TGTCGGT
*
20830256 CCCACTGCCACAACCCTTGGTCCGGTTGGG
127 CCCGCTGCCACAACCCTTGGTCCGGTTGGG
* * **
20830286 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCTACGAAACAGGCGTGCGGGCACCCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCATTCAG
* * * * **
20830351 CAGGCCGAAGAGGCAGAATGCGCAAGCCGGGGA-CAGGCCCGATCCCCCTTGCGTGCTGTCAATC
66 CAGACCGGAGAGGCAAAATGCGCAAGCCGGGGATC-GG-CCGATCCCCTTTGCGT-CTGTCGGTC
** * ** * *
20830415 TTGCTGTCACAACCCTTGGTTTGATCT-GA
128 CCGCTGCCACAACCCTTGGTCCGGT-TGGG
* * * * * * * *
20830444 TCTTAGTC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCGGGCATTGA
1 GCTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCATTCA
* * * * * * * * *
20830508 GCCGACCGGAGAGGCATAATTCGTAAGCCGAGGAAT-GGCCCAGTCCCCTTCTGAGTGGTGTTGG
65 GCAGACCGGAGAGGCAAAATGCGCAAGCCG-GGGATCGGCCGA-TCCCCTT-TGCGT-CTGTCGG
* * *
20830572 TCCCGCTGCCACAACCCTCGGTCCAGCTGGG
126 TCCCGCTGCCACAACCCTTGGTCCGGTTGGG
* * ** *
20830603 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGATCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCATTCAG
* * **
20830668 TC-GACTGGAGAGGCAAAATGTGCAAGTTGGGGATCG
66 -CAGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCG
20830704 ACTCGGTCCC
Statistics
Matches: 320, Mismatches: 84, Indels: 28
0.74 0.19 0.06
Matches are distributed among these distances:
157 5 0.02
158 123 0.38
159 187 0.58
160 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCATTCAG
CAGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCGATCCCCTTTGCGTCTGTCGGTCCCG
CTGCCACAACCCTTGGTCCGGTTGGG
Found at i:20830725 original size:317 final size:317
Alignment explanation
Indices: 20830128--20830786 Score: 770
Period size: 317 Copynumber: 2.1 Consensus size: 317
20830118 ACTCCGTATG
* *
20830128 CTTAGACATGA-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCAG
1 CTTAGAC-TGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCATTCAG
* * * * * * * * *
20830192 CTGATCGGAGAGGTAAAATGGGCAAGCCGGGGATCGACTCGATTCCCCTTTGCGTCTTGTCGGTC
65 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGAATCGACTCCAGTCCCCTTTGAGTCGTGTCGGTC
* * *
20830257 CCACTGCCACAACCCTTGGTCCGGTTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCA
130 CCACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCA
* * * *
20830322 ACCTACGAAACAGGCGTGCGGGCACCCAGCAGGCCGAAGAGGCAGAATGCGCAAGCCGGGGACAG
195 ACCCACGAAACAGGCGTGCGAGCACCCAGCAGACCGAAGAGGCAAAATGCGCAAGCCGGGGACAG
* * * * * *
20830387 GCCCGATCCCCCTTGCGTGCTGTCAATCTTGCTGTCACAACCCTTGGTTTGATCTGAT
260 ACCCGATCCCCCCTACGTGCTGTCAATCTTACTGTCACAACCCTCGGTCTGATCTGAT
* * * *
20830445 CTTAGTCTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCGGGCATTGAGC
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCATTCAGC
* * * * * *
20830510 CGACCGGAGAGGCATAATTCGTAAGCCGAGGAAT-GGC-CCAGTCCCCTTCTGAGTGGTGTTGGT
66 CGACCGGAGAGGCAAAATGCGCAAGCCG-GGAATCGACTCCAGTCCCCTT-TGAGTCGTGTCGGT
* *
20830573 CCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCCACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCC
* * * *** * * * **
20830638 AACCCATGAAACGGGCGTGCGATCGTTCAGTC-GACTGGAGAGGCAAAATGTGCAAGTTGGGGAT
194 AACCCACGAAACAGGCGTGCGAGCACCCAG-CAGACCGAAGAGGCAAAATGCGCAAGCCGGGGA-
* * * *
20830702 C-GACTCGGTCCCCCCTACGTGCTGTCGATCTTACTGTCGCAACCCTCGGTCTGATCTGAT
257 CAGACCCGATCCCCCCTACGTGCTGTCAATCTTACTGTCACAACCCTCGGTCTGATCTGAT
*
20830762 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
20830787 ACTTAGACTG
Statistics
Matches: 284, Mismatches: 53, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
316 12 0.04
317 266 0.94
318 6 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (317 bp):
CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCATTCAGC
CGACCGGAGAGGCAAAATGCGCAAGCCGGGAATCGACTCCAGTCCCCTTTGAGTCGTGTCGGTCC
CACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAA
CCCACGAAACAGGCGTGCGAGCACCCAGCAGACCGAAGAGGCAAAATGCGCAAGCCGGGGACAGA
CCCGATCCCCCCTACGTGCTGTCAATCTTACTGTCACAACCCTCGGTCTGATCTGAT
Found at i:20830798 original size:26 final size:26
Alignment explanation
Indices: 20830762--20830812 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20830752 CTGATCTGAT
20830762 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
20830788 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
20830813 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:20830990 original size:26 final size:26
Alignment explanation
Indices: 20830960--20831014 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
20830950 CGATTCGATA
*
20830960 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCAGATGC
*
20830986 TTAGACATGGAATGAACTCCGGATGC
1 TTAGACATGGAATGAACTCCAGATGC
20831012 TTA
1 TTA
20831015 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCAGATGC
Found at i:20831083 original size:197 final size:197
Alignment explanation
Indices: 20830740--20831118 Score: 503
Period size: 197 Copynumber: 1.9 Consensus size: 197
20830730 TCTTACTGTC
* * * *
20830740 GCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGGATGAA
1 GCAACCCTCGGTCCGATCTGATATTAGACTGGGAATGAACTCCATATACTTAGACTGGGAATGAA
* * * * * * * *
20830805 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTTAGCCGATCGGAGAGGTAGAA
66 CTCCGGATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAA
** *
20830870 TTTGTAAGCTGGGGATCGGCCCGATCCACCCCTACGTGCTGTCGATCCTGCTGCTGGTCTTGCTA
131 TGCGTAAGCTGGGGATCAGCCCGATCCACCCCTACGTGCTGTCGATCCTGCTGCTGGTCTTGCTA
20830935 CT
196 CT
*
20830937 GCAACCCTCGGTCCGAT-TCGATATTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATG
1 GCAACCCTCGGTCCGATCT-GATATTAGACTGGGAATGAACTCCATATACTTAGAC-TGGGAATG
* *
20831000 AACTCCGGATGCTTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAG
64 AACTCCGGATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAG
* * * **
20831065 AATGCGTAAG-TCGGGGATCAGCTCGGTCCCCCCCTGTGTGCTGTCGATCCTGCT
129 AATGCGTAAGCT-GGGGATCAGCCCGATCCACCCCTACGTGCTGTCGATCCTGCT
20831119 ATCTCAACCT
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
196 2 0.01
197 153 0.98
198 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (197 bp):
GCAACCCTCGGTCCGATCTGATATTAGACTGGGAATGAACTCCATATACTTAGACTGGGAATGAA
CTCCGGATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAA
TGCGTAAGCTGGGGATCAGCCCGATCCACCCCTACGTGCTGTCGATCCTGCTGCTGGTCTTGCTA
CT
Found at i:20831267 original size:857 final size:859
Alignment explanation
Indices: 20829579--20832864 Score: 2481
Period size: 894 Copynumber: 3.7 Consensus size: 859
20829569 CTCCGTATGC
* *
20829579 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAA-CGTGCGGG-TGGTCAG
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AAGCGTACGGGCT-CTCAG
* * * * * * * * * *
20829642 CCGGCCGGAGAGGTAGAATGCACAAACCAGGG-ATCG-CCCTGATTCTCCTCTGCGTGTTGTCGG
64 CCGACCGGAGAGGCAGAATGCGCAAGCC-GGGAATCGACCC-GA-TCCCCCCTGAGTGCTGCCGA
* * ** * ** *
20829705 TCCCACTACCTCAA-CC-C-TCGATC-C--GACTACGGCTCAGACATGGAATGAACTCCCTATGC
126 TCCCGCTGCAGCAACCCTCGTCGGTCTCTAGACTGGGGCTTAGACATGGAATGAACTCCCTATGC
* * ** * * * * * *
20829764 CTAAGCCAATCCATGAAACGGGTGTAAGGGCACCCAGTCGACCGAAGAGGCAGAATGTGTAAGTT
191 CTAAGCCAACCCATGAAACGGGCGTGCGGTCGCTCAGTCGACTGGAGAGGCAAAATGTGTAAGTT
* * ** * * **
20829829 GGGGATCGGCCCTAT-CCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCGGTTCGATCTGA
256 GGGGATCGACACGGTCCCCCCTGCGTGCTGTCGATCTTACTGTCGCAACCCTCGGTT-GATCTGA
* * ** *
20829893 TCTTAGACTGGGAATGAACTCTG-ATGCTTTGACTGGGGAAAAACTTCGTATGCCTAAGTCAACC
320 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * * **
20829957 AACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAAAGAGATCGATCAAAGAGGCAGAATGCACAAG
385 CATGAAACGAGCGTGTGGGTGCT---T-AGCC-----GATCG----GAGAGGTAGAATGCGTAAG
* * * * ** *
20830022 -TCAGGGATCAGCCCGGTCC-CTCTTGCATGCTACCGATCCTGCTGTTGGTCCTGCTACTGTAAC
437 CT-AGGGATCGGCCCGATCCACCCTTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACTGTAAC
* * *
20830085 CCTCAGTCCGGTCTGATTTTAGACTGGGAATAAACTCCGTATGCTTAGACATGAAATGAACTCCG
501 CCTCAGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCG
* ** * * * * * * *
20830150 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCAGCTGATCGGAGAGGTAAAATGGGC
566 AATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGT
* * ** * * *
20830215 AAGCCGGGGATC-GACTCGATTCCCCTTTGCGT-CTTGTCGGTCCCACTGCCACAACCCTT-GGT
631 AAGTCGGGGATCAG-CTCGATCCCCCCCTGCGTGC-TGTCGATCCTACTGCCACAA-CCTTCTGT
***** * * * * *
20830277 CCGGTTGGGGCTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCTACGAAACAGGCGTGC
693 CCGGTCCATTCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA-GCGTTC
* ** * * * * * * * *
20830341 GGGCACCCAGCAGGCCGAAGAGGCAGAATGCGCAAGCCGGGGA-CAGGCCCGATCCC-CCTTGCG
756 GGGCGCTAAGCTGGCTGAAGAGGCATAATGCGCAAGCTGAGGATC-GACCCGCTCCCTTC-TGCG
** * * **
20830404 TGCTGTCAATCTTGCTGTCACAACCCTTGGTTTGATCT-GAT
819 TGCTGTCAATCCCGCTGCCACAACCCTCGGTCCGAT-TAGAT
* * * * *
20830445 CTTAGTC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCGGGCAT-TGA
1 -TTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGC-TCTCA
* * * * * * **
20830508 GCCGACCGGAGAGGCATAATTCGTAAGCCGAGGAAT-GGCCC-AGTCCCCTTCTGAGTGGTGTTG
63 GCCGACCGGAGAGGCAGAATGCGCAAGCCG-GGAATCGACCCGA-TCCCC-CCTGAGTGCTGCCG
*
20830571 GTCCCGCTGCCA-CAA-CC-C-TCGGTC-C-AG-CTGGGGCTTAGACATGGAATGAACTCCCTAT
125 ATCCCGCTG-CAGCAACCCTCGTCGGTCTCTAGACTGGGGCTTAGACATGGAATGAACTCCCTAT
* * *
20830629 GCCTAAGCCAACCCATGAAACGGGCGTGCGATCGTTCAGTCGACTGGAGAGGCAAAATGTGCAAG
189 GCCTAAGCCAACCCATGAAACGGGCGTGCGGTCGCTCAGTCGACTGGAGAGGCAAAATGTGTAAG
* *
20830694 TTGGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCTTACTGTCGCAACCCTCGGTCTGATCT
254 TTGGGGATCGACACGGTCCCCCCTGCGTGCTGTCGATCTTACTGTCGCAACCCTCGGT-TGATCT
*
20830759 GATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
318 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
** *
20830824 CCCATGAAACGAGCGTGTGGGTGCTTAGCCGATCGGAGAGGTAGAATTTGTAAGCTGGGGATCGG
383 CCCATGAAACGAGCGTGTGGGTGCTTAGCCGATCGGAGAGGTAGAATGCGTAAGCTAGGGATCGG
* * * * * *
20830889 CCCGATCCACCCCTACGTGCTGTCGATCCTGCTGCTGGTCTTGCTACTGCAACCCTCGGTCCGAT
448 CCCGATCCACCCTTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACTGTAACCCTCAGTCCGGT
* * *
20830954 -TCGATATTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGGATGCTTAAGC
513 CT-GATATTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGAATGCCTAAGC
20831018 CAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGAT
577 CAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGAT
* * * ** * *
20831083 CAGCTCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTATCTCAACCTTCTGTCTGGTCCATTCTTA
642 CAGCTCGATCCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCTTCTGTCCGGTCCATTCTTA
* * *
20831148 GATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGAGCTGGC
707 GAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGCGTTCGGGCGCTAAGCTGGC
* * **
20831213 TGAAGAGGCATAATACGCAAGCTGAGGATCGACCCGCTCCCTTCTGCATGCTGTCGGTCCCGCTG
771 TGAAGAGGCATAATGCGCAAGCTGAGGATCGACCCGCTCCCTTCTGCGTGCTGTCAATCCCGCTG
* *
20831278 CCACAACCCTCGGTCCGGTTAGGGT
836 CCACAACCCTCGGTCCGATTA-GAT
* * * * *
20831303 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACTCATGAAACAGGCGTACGGGCTCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCTCTCAGCC
* * * * * *
20831368 GGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCTG
66 GACCGGAGAGGCAGAATGCGCAAGCCGGGAATCGACCCGATCCCCCCTGAGTGCTGCCGATCCCG
* * * *
20831433 TTGTAGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATAGGG
131 CTGCAGCAACCCTC-G-TCGGTC---TC-TAGACTGGG---G--CT---TA-G---A-CAT-GGA
* * * * *
20831498 ATGAACTCCATATGCCTAAGTCAACCCACGAAA-GGAGCGTGCGGGT-GCTCAGCCG-GTCGGAG
176 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGG-GCGTGC-GGTCGCTCAGTCGACT-GGAG
* * * * * * *
20831560 AGGCAAAATGCGTAAGCTGAGGATTGACAAGGTCCCCACTTGCGTGCTGTCGATCCTGTTGCTGG
238 AGGCAAAATGTGTAAGTTGGGGATCGACACGGTCCCC-CCTGCGTGCTGTCGAT-C--TTACT-G
* * *
20831625 TACTACTGATGTAACCCTCGATTTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
298 ---T-C----GCAACCCTCG-GTTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * **
20831690 T-AGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAACCGGCCGG
354 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTTAGCCGATCGG
*
20831754 AGAGGTAGAATGCGTAAGCTTGGGATCGGCCCGATCCACCCTTGCGTGCTGTCGATCCTGCTGCT
419 AGAGGTAGAATGCGTAAGCTAGGGATCGGCCCGATCCACCCTTGCGTGCTGTCGATCCTGCTGCT
* * *
20831819 GGTCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
484 GGTCCTGCTACTGTAACCCTCAGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
20831884 ACATGGAATGAACTCCGAATGCCTAAGCCAACCCATGAAACTAGCGTGCGGGCGCTCAGTCGGTC
549 ACATGGAATGAACTCCGAATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTC
* * ** * *
20831949 AGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGATCCTTCCCTACGTGCTATCGATCCTACTG
614 GGAGAGGCAGAATGCGTAAGTCGGGGATCAGCTCGATCCCCCCCTGCGTGCTGTCGATCCTACTG
* * *
20832014 CCGCAACCTTCTGTCCGGTCCATTCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
679 CCACAACCTTCTGTCCGGTCCATTCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
20832079 GAACCAAGTGTTCGGGCGCTAAGCTAGTTGGAGAGGCATAATGTGCAAGCTGAGGATCGACCTGC
744 GAAAC-AGCGTTCGGGCGCTAAGCTGGCTGAAGAGGCATAATGCGCAAGCTGAGGATCGACCCGC
* ** * * * ** **
20832144 TCCCTCTCTGCGTGCTGCCGGTCCCGCTACCACGACCCTCGGTCTGGCTAGGGC
808 TCCCT-TCTGCGTGCTGTCAATCCCGCTGCCACAACCCTCGGTCCGATTA-GAT
* * ** * *
20832198 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACTCACGAAACGGGCGTGCGGGCTCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCTCTCAGCC
** * * * * * ** *
20832263 GGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAATCCCCCCT-ACGTGCTATCGATCCT
66 GACCGGAGAGGCAGAATGCGCAAGCCGGGAATCGACCCGATCCCCCCTGA-GTGCTGCCGATCCC
* * * * * *
20832327 ACTACCGAAAACCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGA-ATGG
130 GCTGCAGCAACCCTC-GT-CGGTC---TC-TAGACT--G---G------G---GCTTAGACATGG
* * * * *
20832391 AGATGAAATCCGTATGCCTAAGTCAACCCATGAAA-GAAGCGTGCGGGT-GCTCAGTCG-GTCGG
175 A-ATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GGCGTGC-GGTCGCTCAGTCGACT-GG
* **** * * * *
20832453 AGAGGCAAAATGCGTAAGCCAAGGATTGACAAGGTCCCCACCTACGTGCTATCGATCCTGCTGCT
236 AGAGGCAAAATGTGTAAGTTGGGGATCGACACGGTCCCC-CCTGCGTGC--T-G-T-C-GAT-C-
* * * * * *
20832518 GGTATTACTGACGCAACCCTCGATCCGATCCGATCATAGACTGGAAATGAACTCCGTATGCTTAG
292 ----TTACTGTCGCAACCCTCGGT-TGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * * *
20832583 A-TATGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTTGC
352 ACT-GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTTAGC-CGA
* * * * ** * **
20832647 T-AGAGAGGTAGAATGCGTAAG-TCGAAGACCGGCTTGATCCCCCCTTGCGTGCTACCGATCCTG
415 TCGGAGAGGTAGAATGCGTAAGCTAG-GGATCGGCCCGATCCACCCTTGCGTGCTGTCGATCCTG
* * * ** * *
20832710 CTACTGGTCCTGTTACCGTAACCCTC-GATCTTGT-TCGATCTGAGACTGGGAATGAACTCCGTA
479 CTGCTGGTCCTGCTACTGTAACCCTCAG-TCCGGTCT-GATATTAGACTGGGAATGAACTCCGTA
* * * * *
20832773 TGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTA
542 TGCTTAGACATGGAATGAACTCCGAATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCA
*
20832838 GCCAGTCGGAGAGGCAGAATGCGTAAG
607 GCCGGTCGGAGAGGCAGAATGCGTAAG
20832865 CCAAGGACTA
Statistics
Matches: 1990, Mismatches: 323, Indels: 183
0.80 0.13 0.07
Matches are distributed among these distances:
855 1 0.00
856 57 0.03
857 389 0.20
858 11 0.01
860 5 0.00
861 6 0.00
865 4 0.00
866 11 0.01
867 198 0.10
868 76 0.04
869 56 0.03
871 1 0.00
873 2 0.00
876 2 0.00
877 1 0.00
880 1 0.00
881 5 0.00
882 79 0.04
883 16 0.01
884 1 0.00
886 4 0.00
887 1 0.00
890 1 0.00
891 1 0.00
894 412 0.21
895 385 0.19
896 237 0.12
897 4 0.00
898 1 0.00
899 2 0.00
900 3 0.00
901 5 0.00
903 1 0.00
904 7 0.00
906 4 0.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (859 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCTCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCGGGAATCGACCCGATCCCCCCTGAGTGCTGCCGATCCCG
CTGCAGCAACCCTCGTCGGTCTCTAGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCATGAAACGGGCGTGCGGTCGCTCAGTCGACTGGAGAGGCAAAATGTGTAAGTTGGGGA
TCGACACGGTCCCCCCTGCGTGCTGTCGATCTTACTGTCGCAACCCTCGGTTGATCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
ACGAGCGTGTGGGTGCTTAGCCGATCGGAGAGGTAGAATGCGTAAGCTAGGGATCGGCCCGATCC
ACCCTTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACTGTAACCCTCAGTCCGGTCTGATATT
AGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGAATGCCTAAGCCAACCCACG
AAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCTCGAT
CCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCTTCTGTCCGGTCCATTCTTAGAATGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACAGCGTTCGGGCGCTAAGCTGGCTGAAGAGGCA
TAATGCGCAAGCTGAGGATCGACCCGCTCCCTTCTGCGTGCTGTCAATCCCGCTGCCACAACCCT
CGGTCCGATTAGAT
Found at i:20831423 original size:158 final size:157
Alignment explanation
Indices: 20830985--20831486 Score: 423
Period size: 158 Copynumber: 3.2 Consensus size: 157
20830975 ACTCCATATG
* * * * *
20830985 CTTAGACATGGAATGAACTCCGGATGCTTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCTCTCAG-
* * * *
20831050 CGG-TCGGAGAGGCAGAATGCGTAAGTCGGGGATC-AGCTCGGTCCCCCCCTGTGTGCTGTCGAT
65 CGGCT-GGAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCCGAT-CCCCCCTGCGTGCTGTCGAT
* * * * * * *
20831113 CCTGCTATCTCAACCTTCTGTCTGGTCCATT
127 CCCGCTACCACAACCCTCGGTCCGGTCCAGT
* * * *
20831144 CTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-GAGCGTTCGGG-TGCTG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GCGTACGGGCT-CTC
* * * * * ** * *
20831206 AGCTGGCTGAAGAGGCATAATACGCAAG-CTGAGGATCGACCCGCTCCCTTCTGCATGCTGTCGG
63 AGC-GGCTGGAGAGGCAGAATGCGCAAGTC-GGGGATCGACCCGATCCCCCCTGCGTGCTGTCGA
* *
20831270 TCCCGCTGCCACAACCCTCGGTCCGGT-TAGGGT
126 TCCCGCTACCACAACCCTCGGTCCGGTCCA--GT
* * *
20831303 -TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACTCATGAAACAGGCGTACGGGCTCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCTCTCAG-
* *
20831367 CGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCT
65 CGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCC
*** * *
20831432 G-TTGTAGCAACCCTCGGTTCGGT-CTGAT
130 GCTACCA-CAACCCTCGGTCCGGTCCAG-T
20831460 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
20831487 TTAGAATAGG
Statistics
Matches: 271, Mismatches: 54, Indels: 37
0.75 0.15 0.10
Matches are distributed among these distances:
156 1 0.00
157 5 0.02
158 177 0.65
159 86 0.32
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCTCTCAGC
GGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCCG
CTACCACAACCCTCGGTCCGGTCCAGT
Found at i:20831625 original size:698 final size:698
Alignment explanation
Indices: 20830286--20831815 Score: 1877
Period size: 698 Copynumber: 2.2 Consensus size: 698
20830276 TCCGGTTGGG
* * * * * *
20830286 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCTACGAAACAGGCGTGCGGGCACCCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * *
20830351 CAGGCCGAAGAGGCAGAATGCGCAAGCCGGGGA-CAGGCCCGAT-CCCCCTTGCGTGCTGTCAAT
66 CCGGCCGGAGAGGCAGAATGCGTAAG-CGGGGATCA-GCCCGATCCCCCCTTGCGTGCTGTCGAT
* * * *
20830414 CTTGCTGTCACAACCCTTGGTTTGATCTGATCTTAGTCTGAGAATGAACTCCGTATGCCTAAGTC
129 CCTGCTATCACAACCCTTGGTCTGATCTCATCTTAGTCTGAGAATGAACTCCGTATGCCTAAGTC
* * * * *
20830479 AACCCACGAAATAAGCGTTCGGGCATTGAGCCGACCGGAGAGGCATAATTCGTAAGCCGAGGAAT
194 AACCCACGAAACAAGCGTTCGGGCACTGAGCCGACCGAAGAGGCATAATACGCAAGCCGAGGAAT
* * * *
20830544 GGCCCAGTCCCCTTCTGAGTGGTGTTGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAG
259 GACCCAGTCCCCTTCTGAGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAG
* * *
20830609 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGATCGTTCAGTCGACT
324 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGAGCGTTCAGTCGACT
* * * * * *
20830674 GGAGAGGCAAAATGTGCAAGTTGGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCTTACTGT
389 GGAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCCTACTGT
* * *
20830739 CGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTGGGGATGA
454 AGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGAATAGGGATGA
* * * * * *
20830804 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTTAGCCGATCGGAGAGGTAGA
519 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAAA
** * * ** *
20830869 ATTTGTAAGCTGGGGATCGGCCCGATCCACCCCTACGTGCTGTCGATCCTGCTGCTGGT-CTTGC
584 ATGCGTAAGCTGAGGATCGACAAGATCCACCCCTACGTGCTGTCGATCCTGCTGCTGGTAC-TAC
* *
20830933 T-ACTGCAACCCTCGGTCCGATTCGATATTAGACTGGGAATGAACTCCATAT
648 TGA-TGCAACCCTCGATCCGATCCGATATTAGACTGGGAATGAACTCCATAT
* *
20830984 GCTTAGACATGGAATGAACTCCGGATGCTTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * *
20831049 CCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCTCGGTCCCCCCCTGTGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGTAAG-CGGGGATCAGCCCGATCCCCCCTTGCGTGCTGTCGATC
* * * *
20831114 CTGCTATCTCAA-CCTTCTGTCTGGTC-CATTCTTAGAT-TGGGAATGAACTCCGTATGCCTAAG
130 CTGCTATCACAACCCTT-GGTCTGATCTCA-TCTTAG-TCTGAGAATGAACTCCGTATGCCTAAG
* ** * * * *
20831176 TCAACCCACGAAACGAGCGTTCGGGTGCTGAGCTGGCTGAAGAGGCATAATACGCAAGCTGAGG-
192 TCAACCCACGAAACAAGCGTTCGGGCACTGAGCCGACCGAAGAGGCATAATACGCAAGCCGAGGA
* *
20831240 ATCGACCC-G-CTCCCTTCTGCA-TGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGTTAGGG
257 AT-GACCCAGTC-CCCTTCTG-AGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCAGCTAGGG
* * * *
20831302 TTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACTCATGAAACAGGCGTACGGGC-TCTCAG
319 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGAGCGT-TCAG
* * *
20831366 TCGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
383 TCGACTGGAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
** * *
20831431 TGTTGTAGCAACCCTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATA
448 TACTGTAGCAACCCTCGGTCT-GATCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGAATA
* *
20831495 GGGATGAACTCCATATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGTGCTCAGCCGGTCGGAG
512 GGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAG
* * * * *
20831560 AGGCAAAATGCGTAAGCTGAGGATTGACAAGGTCC-CCACTTGCGTGCTGTCGATCCTGTTGCTG
577 AGGCAAAATGCGTAAGCTGAGGATCGACAAGATCCACC-CCTACGTGCTGTCGATCCTGCTGCTG
* ** * *
20831624 GTACTACTGATGTAACCCTCGATTTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
641 GTACTACTGATGCAACCCTCGATCCGATCCGATATTAGACTGGGAATGAACTCCATAT
* * * * *
20831682 GCTTAGAC-TAGG-ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCA
* * * * *
20831745 ACCGGCCGGAGAGGTAGAATGCGTAAGCTTGGGATCGGCCCGATCCACCCTTGCGTGCTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGCGTAAGC-GGGGATCAGCCCGATCCCCCCTTGCGTGCTGTCGAT
20831810 CCTGCT
129 CCTGCT
20831816 GCTGGTCCTG
Statistics
Matches: 706, Mismatches: 111, Indels: 31
0.83 0.13 0.04
Matches are distributed among these distances:
696 1 0.00
697 109 0.15
698 471 0.67
699 124 0.18
700 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (698 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGTAAGCGGGGATCAGCCCGATCCCCCCTTGCGTGCTGTCGATCC
TGCTATCACAACCCTTGGTCTGATCTCATCTTAGTCTGAGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACAAGCGTTCGGGCACTGAGCCGACCGAAGAGGCATAATACGCAAGCCGAGGAATGA
CCCAGTCCCCTTCTGAGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGAC
ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGAGCGTTCAGTCGACTGG
AGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCCTACTGTAG
CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGAATAGGGATGAAC
TCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAAAAT
GCGTAAGCTGAGGATCGACAAGATCCACCCCTACGTGCTGTCGATCCTGCTGCTGGTACTACTGA
TGCAACCCTCGATCCGATCCGATATTAGACTGGGAATGAACTCCATAT
Found at i:20831701 original size:25 final size:26
Alignment explanation
Indices: 20831657--20831708 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
20831647 TTGATCCGAT
*
20831657 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20831683 CTTAGACTAGG-ATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20831708 C
1 C
20831709 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20831905 original size:26 final size:26
Alignment explanation
Indices: 20831853--20831905 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20831843 CCGGTCTGAT
* *
20831853 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
20831879 CTTAGACAT-GGAATGAACTCCGAATG
1 CTTAGAC-TGGGAATGAACTCCGAATG
20831905 C
1 C
20831906 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:20832009 original size:197 final size:195
Alignment explanation
Indices: 20831440--20832014 Score: 689
Period size: 196 Copynumber: 2.9 Consensus size: 195
20831430 CTGTTGTAGC
20831440 AACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-ATAGGGATGAAC
1 AACCCTC-GTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATA-GGATGAAC
* * *
20831504 TCC-ATATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAA
64 TCCGA-ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAA
* * ** * *
20831568 TGCGTAAGCTGAGGAT-TGACAAGGTCCCCACTTGCGTGCTGTCGATCCTGTTGCTGGTACTACT
128 TGCGTAAGCTGGGGATCAG-CCCGATCCCC-CTTGCGTGCTGTCGATCCTGCTGCTGGTACTACT
*
20831632 GATGT
191 GACGT
* * *
20831637 AACCCTCGATTTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TAGGATGAACT
1 AACCCTCG-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGGATGAACT
* * * * *
20831701 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAACCGGCCGGAGAGGTAGAATG
65 CCGAATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATG
* * * *
20831766 CGTAAGCTTGGGATCGGCCCGATCCACCCTTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCT-AC
130 CGTAAGCTGGGGATCAGCCCGATCC-CCCTTGCGTGCTGTCGATCCTGCTGCTGGTACTACTGA-
20831830 CGT
193 CGT
* *
20831833 AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAAC
1 AACCCTC-GTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGG-ATGAAC
* * * * *
20831897 TCCGAATGCCTAAGCCAACCCATGAAACTAGCGTGCGGGCGCTCAGTCGGTCAGAGAGGCAGAAT
64 TCCGAATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAAT
* * *
20831962 GCGTAAG-TCGGGGATCAGCCCGATCCTTCCC-TACGTGCTATCGATCCTACTGC
129 GCGTAAGCT-GGGGATCAGCCCGATCC--CCCTTGCGTGCTGTCGATCCTGCTGC
20832015 CGCAACCTTC
Statistics
Matches: 325, Mismatches: 42, Indels: 22
0.84 0.11 0.06
Matches are distributed among these distances:
195 1 0.00
196 165 0.51
197 156 0.48
198 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Consensus pattern (195 bp):
AACCCTCGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGGATGAACTC
CGAATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGC
GTAAGCTGGGGATCAGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGCTGGTACTACTGACGT
Found at i:20832295 original size:159 final size:160
Alignment explanation
Indices: 20831878--20832347 Score: 411
Period size: 159 Copynumber: 3.0 Consensus size: 160
20831868 AACTCTGTAT
** * *
20831878 GCTTAGACATGGAATGAACTCCGAATGCCTAAGCCAACCCATGAAACTAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * *
20831943 TCGGTC-AGAGAGGCAGAATGCGTAAGTCGGGGATC-AGCCCGATCCTTCCCTACGTGCTATCGA
66 TCGGTCGA-AGAGGCAGAATGCGTAAGCCGGGGATCGAGCCCGATCCCTCCCTACGTGCTACCGA
* * * * * *
20832006 TCCTACTGCCGCAACCTTCTGTCCGGTCCAT
130 TCCCACTACCACAACCCTCGGTCCGGTCCAG
* * * * * *
20832037 TCTTAGAC-TGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAACCAAGTGTTCGGGCGCTA
1 GCTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTC
* * * * * * * * * * * * *
20832100 AG-CTAGTTGGAGAGGCATAATGTGCAAGCTGAGGATCGA-CCTGCTCCCTCTCTGCGTGCTGCC
64 AGTC-GGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGAGCCCGATCCCTCCCTACGTGCTACC
* * * * *
20832163 GGTCCCGCTACCACGACCCTCGGTCTGG-CTAGG
128 GATCCCACTACCACAACCCTCGGTCCGGTCCA-G
* ** *
20832196 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACTCACGAAACGGGCGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* *
20832261 TCGGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCG-GCCCAATCCC-CCCTACGTGCTATCGAT
66 TCGGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGAGCCCGATCCCTCCCTACGTGCTACCGAT
* *
20832324 CCTACTACCGA-AAACCTCGGTCCG
131 CCCACTACC-ACAACCCTCGGTCCG
20832348 ATCTGATCTT
Statistics
Matches: 232, Mismatches: 68, Indels: 23
0.72 0.21 0.07
Matches are distributed among these distances:
158 34 0.15
159 193 0.83
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
TCGGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGAGCCCGATCCCTCCCTACGTGCTACCGAT
CCCACTACCACAACCCTCGGTCCGGTCCAG
Found at i:20832887 original size:197 final size:193
Alignment explanation
Indices: 20832338--20832896 Score: 597
Period size: 197 Copynumber: 2.8 Consensus size: 193
20832328 CTACCGAAAA
* * * * *
20832338 CCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGAATGGAGATGAAATCCG
1 CCTCGATCCGATCCGATC-TAGACTGGGAATGAACTCCGTATGCTTAGAATGGA-ATGAACTCCG
* * * * * *
20832403 TATGCCTAAGTCAACCCATGAAA-GAAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAAAATGCG
64 TATGCCTAAGCCAACCCACGAAACG-AGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCG
* * * * * * *
20832467 TAAGCCAAGGATTGACAAGGTCCCCACCTACGTGCTATCGATCCTGCTGCTGGTATTACTGACGC
128 TAAGCCAAGGACTAACTA-GTCCCC-CCTGCGTGCTACCGATCCTGCTACTGGTACTACTGACGC
20832532 AAC
191 AAC
* *
20832535 CCTCGATCCGATCCGATCATAGACTGGAAATGAACTCCGTATGCTTAGATATGGGATGAACTCCG
1 CCTCGATCCGATCCGATC-TAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGAATGAACTCCG
** * *
20832600 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTTG-CTAGAGAGGTAGAATGCG
64 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTC-GGAGAGGCAGAATGCG
* *** * * * *
20832664 TAAGTCGAA-GACCGGCTTGATCCCCCCTTGCGTGCTACCGATCCTGCTACTGGTCCT-GTTACC
128 TAAG-CCAAGGACTAACTAG-TCCCCCC-TGCGTGCTACCGATCCTGCTACTGGTACTACTGA-C
*
20832727 GTAAC
189 GCAAC
* * *
20832732 CCTCGATCTTG-TTCGATCTGAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTC
1 CCTCGATC-CGATCCGATCT-AGACTGGGAATGAACTCCGTATGCTTAGA-ATGGAATGAACTCC
* *
20832796 GTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTAGCCAGTCGGAGAGGCAGAATGCG
63 GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCG
20832861 TAAGCCAAGGACTAACCTAGTCCCCCCTGCGTGCTA
128 TAAGCCAAGGACTAA-CTAGTCCCCCCTGCGTGCTA
20832897 TCAATCCTAC
Statistics
Matches: 302, Mismatches: 48, Indels: 25
0.81 0.13 0.07
Matches are distributed among these distances:
196 19 0.06
197 270 0.89
198 13 0.04
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (193 bp):
CCTCGATCCGATCCGATCTAGACTGGGAATGAACTCCGTATGCTTAGAATGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGTAA
GCCAAGGACTAACTAGTCCCCCCTGCGTGCTACCGATCCTGCTACTGGTACTACTGACGCAAC
Found at i:20832896 original size:895 final size:890
Alignment explanation
Indices: 20830732--20832908 Score: 2955
Period size: 895 Copynumber: 2.4 Consensus size: 890
20830722 GCTGTCGATC
* * * * *
20830732 TTACTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACTTAGACTG
1 TTACTGACGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* *
20830797 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTTAGCCGATCGGAG
66 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGCCGCT-GGAG
** * *
20830862 AGGTAGAATTTGTAAGCTGGGGATCGGCCCGATCCACCCC-TACGTGCTGTCGATCCTGCTGCTG
130 AGGTAGAATGCGTAAG-TCGGGATCGGCCCGATCC-CCCCTTGCGTGCTGTCGATCCTGCTGCTG
* * * * * *
20830926 GTCTTGCTACTGCAACCCTCGGTCCGATTCGATATTAGACTGGGAATGAACTCCATATGCTTAGA
193 GTCCTGCTACCGTAACCCTCGATCCG-TTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *
20830991 CATGGAATGAACTCCGGATGCTTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCG
257 CATGGAATGAACTCCGAATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCG
* * * * * * **
20831056 GAGAGGCAGAATGCGTAAGTCGGGGATCAGCTCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTAT
322 GAGAGGCAGAATGCGTAAGTCGGGGATAACCT-AGT-CCCCCCTGCGTGCTATCGATCCTACTGC
* * *
20831121 CTCAACCTTCTGTCTGGTCCATTCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
385 CGCAACCTTCTGTCCGGTCCATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
20831186 AAACGAGCGTTCGGGTGCTGAGCTGGCTGAAGAGGCATAATACGCAAGCTGAGGATCGACCCGCT
450 AAACAAGCGTTCGGGCGCTAAGCTAGCTGAAGAGGCATAATACGCAAGCTGAGGATCGACCCGCT
* * * *
20831251 CCCTTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGTTAGGGTTTAGACATGGAAT
515 CCCTTCTGCATGCTGCCGGTCCCGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAAT
* *
20831316 GAACTCCTTATGCCTAAGCCAACTCATGAAACAGGCGTACGGGCTCTCAGTCGGCTGGAGAGGCA
580 GAACTCCTTATGCCTAAGCCAACTCACGAAACAGGCGTACGGGCTCTCAGTCGGCTGAAGAGGCA
* * * * ** ** * *
20831381 GAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCTGTTGTAGCAACCCT
645 GAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTACGTGCTACCGATCCTACTACAGAAAACCT
* * * *
20831446 CGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATAGGGATGAACTCCATAT
710 CGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATAGGGATGAAATCCATAT
*
20831511 GCCTAAGTCAACCCACGAAAGGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCGTAAG
775 GCCTAAGTCAACCCACGAAAGAAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCGTAAG
** * * * *
20831576 CTGAGGATTGACAAGGTCCCCACTTGCGTGCTGTCGATCCTGTTGCTGGTA
840 CCAAGGATTGACAAGGTCCCCACCTACGTGCTATCGATCCTGCTGCTGGTA
* * * *
20831627 CTACTGATGTAACCCTCGATTTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
1 TTACTGACGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* *
20831692 -GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAACCGGCCGGAG
66 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGCC-GCTGGAG
* *
20831756 AGGTAGAATGCGTAAGCTTGGGATCGGCCCGATCCACCCTTGCGTGCTGTCGATCCTGCTGCTGG
130 AGGTAGAATGCGTAAG-TCGGGATCGGCCCGATCCCCCCTTGCGTGCTGTCGATCCTGCTGCTGG
* *
20831821 TCCTGCTACCGTAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
194 TCCTGCTACCGTAACCCTCGA-TCCGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
20831885 CATGGAATGAACTCCGAATGCCTAAGCCAACCCATGAAACTAGCGTGCGGGCGCTCAGTCGGTCA
257 CATGGAATGAACTCCGAATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCG
* * * *
20831950 GAGAGGCAGAATGCGTAAGTCGGGGATCAGCC-CGATCCTTCCCTACGTGCTATCGATCCTACTG
322 GAGAGGCAGAATGCGTAAGTCGGGGAT-AACCTAG-TCC-CCCCTGCGTGCTATCGATCCTACTG
*
20832014 CCGCAACCTTCTGTCCGGTCCATTCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
384 CCGCAACCTTCTGTCCGGTCCATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * ** *
20832079 GAACCAAGTGTTCGGGCGCTAAGCTAGTTGGAGAGGCATAATGTGCAAGCTGAGGATCGACCTGC
449 GAAACAAGCGTTCGGGCGCTAAGCTAGCTGAAGAGGCATAATACGCAAGCTGAGGATCGACCCGC
* * *
20832144 TCCCTCTCTGCGTGCTGCCGGTCCCGCTACCACGACCCTCGGTCTGGCTAGGGCTTAGACATGGA
514 TCCCT-TCTGCATGCTGCCGGTCCCGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGA
* *
20832209 ATGAACTCCTTATGCCTAAGCCAACTCACGAAACGGGCGTGCGGGCTCTCAGTCGG-TCGAAGAG
578 ATGAACTCCTTATGCCTAAGCCAACTCACGAAACAGGCGTACGGGCTCTCAGTCGGCT-GAAGAG
* * * *
20832273 GCAGAATGCGTAAGCCGGGGATCGGCCCAATCCCCCCTACGTGCTATCGATCCTACTACCGAAAA
642 GCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTACGTGCTACCGATCCTACTACAGAAAA
*
20832338 CCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGAAT-GGAGATGAAATCC
707 CCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATAGG-GATGAAATCC
* * *
20832402 GTATGCCTAAGTCAACCCATGAAAGAAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAAAATGCG
771 ATATGCCTAAGTCAACCCACGAAAGAAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCG
20832467 TAAGCCAAGGATTGACAAGGTCCCCACCTACGTGCTATCGATCCTGCTGCTGGTA
836 TAAGCCAAGGATTGACAAGGTCCCCACCTACGTGCTATCGATCCTGCTGCTGGTA
* * *
20832522 TTACTGACGCAACCCTCGATCCGATCCGATCATAGACTGGAAATGAACTCCGTATGCTTAGA-TA
1 TTACTGACGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* * * * * *
20832586 TGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTTGCTAGA
66 -GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGC-CGCTGGA
* * ** ** *
20832651 GAGGTAGAATGCGTAAGTCGAAGACCGGCTTGATCCCCCCTTGCGTGCTACCGATCCTGCTACTG
129 GAGGTAGAATGCGTAAGTCG-GGATCGGCCCGATCCCCCCTTGCGTGCTGTCGATCCTGCTGCTG
* * *
20832716 GTCCTGTTACCGTAACCCTCGATCTTGTTCGATCTGAGACTGGGAATGAACTCCGTATGCTTAGA
193 GTCCTGCTACCGTAACCCTCGATC-CGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * * *
20832781 CATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTAGCCAGTCG
257 CATGGAATGAACTCCGAATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCG
* ** *
20832846 GAGAGGCAGAATGCGTAAGCCAAGGACTAACCTAGTCCCCCCTGCGTGCTATCAATCCTACTG
322 GAGAGGCAGAATGCGTAAGTCGGGGA-TAACCTAGTCCCCCCTGCGTGCTATCGATCCTACTG
20832909 TGGCAAACCT
Statistics
Matches: 1120, Mismatches: 144, Indels: 36
0.86 0.11 0.03
Matches are distributed among these distances:
893 8 0.01
894 396 0.35
895 464 0.41
896 246 0.22
897 6 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (890 bp):
TTACTGACGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGCCGCTGGAGA
GGTAGAATGCGTAAGTCGGGATCGGCCCGATCCCCCCTTGCGTGCTGTCGATCCTGCTGCTGGTC
CTGCTACCGTAACCCTCGATCCGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATG
GAATGAACTCCGAATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGA
GGCAGAATGCGTAAGTCGGGGATAACCTAGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAAC
CTTCTGTCCGGTCCATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAA
GCGTTCGGGCGCTAAGCTAGCTGAAGAGGCATAATACGCAAGCTGAGGATCGACCCGCTCCCTTC
TGCATGCTGCCGGTCCCGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTC
CTTATGCCTAAGCCAACTCACGAAACAGGCGTACGGGCTCTCAGTCGGCTGAAGAGGCAGAATGC
GCAAGCCGGGGATCGACCCAATCCCCCCTACGTGCTACCGATCCTACTACAGAAAACCTCGGTCC
GATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATAGGGATGAAATCCATATGCCTAA
GTCAACCCACGAAAGAAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCGTAAGCCAAGG
ATTGACAAGGTCCCCACCTACGTGCTATCGATCCTGCTGCTGGTA
Found at i:20833434 original size:26 final size:26
Alignment explanation
Indices: 20833404--20833454 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20833394 CCGTTCCGAT
20833404 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20833430 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
20833455 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20834249 original size:158 final size:159
Alignment explanation
Indices: 20833988--20834285 Score: 357
Period size: 158 Copynumber: 1.9 Consensus size: 159
20833978 CTCGATCTGG
* * *
20833988 TCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCCACGAAATGAACGTGCGGGCG
1 TCTGATCTTAGACTGGGAACGAACTCCGTATGCATAAGCCAACCCACGAAATGAACGTGCGGGCA
* * ** * * *
20834053 CTCAGCAAATCGGAGAGGGAAAATGTGCAAGCCGGGGATCG-GCCTGGTCCCTTC-TGCGTGCTG
66 CTCAGCAAATCGGAGAGGCAAAATGCGCAAGCAAGGGATCGACCCT-GTCCCCTCATGCGTGCTA
20834116 TCGATCCTACTATCGTAACCCTCTGTCCGA
130 TCGATCCTACTATCGTAACCCTCTGTCCGA
* * * ** *
20834146 TCTGATCTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGTGTTCGGGCA
1 TCTGATCTTAGACTGGGAACGAACTCCGTATGCATAAGCCAACCCACGAAATGAACGTGCGGGCA
* * *** * * *
20834211 TTGAGCCGGTCGGAGAGGCATAATGCGCAAGCAAGGGATTGACCCTGTCCCCTCATGTGTGCTAT
66 CTCAGCAAATCGGAGAGGCAAAATGCGCAAGCAAGGGATCGACCCTGTCCCCTCATGCGTGCTAT
20834276 CGATCCTACT
131 CGATCCTACT
20834286 GTTGGTCCTA
Statistics
Matches: 114, Mismatches: 24, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 93 0.82
159 21 0.18
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (159 bp):
TCTGATCTTAGACTGGGAACGAACTCCGTATGCATAAGCCAACCCACGAAATGAACGTGCGGGCA
CTCAGCAAATCGGAGAGGCAAAATGCGCAAGCAAGGGATCGACCCTGTCCCCTCATGCGTGCTAT
CGATCCTACTATCGTAACCCTCTGTCCGA
Found at i:20834373 original size:26 final size:26
Alignment explanation
Indices: 20834325--20834378 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
20834315 GATCCGATCT
** *
20834325 TAGACTGAGAATGAACTTGGTATGCC
1 TAGACTGAGAATGAACTCCGTATACC
20834351 TAGACATG-GAATGAACTCCGTATACC
1 TAGAC-TGAGAATGAACTCCGTATACC
20834377 TA
1 TA
20834379 AGCCAACCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCGTATACC
Found at i:20834706 original size:26 final size:26
Alignment explanation
Indices: 20834665--20834717 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20834655 CCAGTCTGAT
20834665 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20834691 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
20834717 C
1 C
20834718 CTAAGTCACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20836386 original size:159 final size:160
Alignment explanation
Indices: 20836097--20836514 Score: 515
Period size: 159 Copynumber: 2.6 Consensus size: 160
20836087 GGCTCAAACT
** * * * *
20836097 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCATTCAGC
1 CTTAGATCAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGC
* * * *
20836162 CG-GTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCTTTGCATGCTGCCGATC
66 CGAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTTTACATGCTGCCAATC
* *
20836226 CCACTGCCACAACCCTC-GGTCTGGCTGGGG
131 CCACTACCACAACCCTCAGTTC-GGCTGGGG
* * *
20836256 CTTAGA-CATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 CTTAGATCA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * *
20836320 CCGACT-GGAGGGGCAGAATGCGCAAGTCGGGGATC-AGCTCGGTCCCCCTTTACGTGCTGCCAA
65 CCGAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCCGGTCCCCCTTTACATGCTGCCAA
* *
20836383 TCCCGCTACCACAACCTTCAGTTCGGCTGGGG
129 TCCCACTACCACAACCCTCAGTTCGGCTGGGG
* * * *
20836415 CTTAGATGAGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAATGGGTGTGCGGGCACTCAGC
1 CTTAGATCAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGC
* * *
20836480 C-AGTCGGAGTGGTAGAATGCGCAAGTTGGGGATCG
66 CGAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCG
20836515 GCCTGATCCC
Statistics
Matches: 220, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
158 3 0.01
159 212 0.96
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.18
Consensus pattern (160 bp):
CTTAGATCAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGC
CGAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTTTACATGCTGCCAATC
CCACTACCACAACCCTCAGTTCGGCTGGGG
Found at i:20836609 original size:26 final size:26
Alignment explanation
Indices: 20836573--20836625 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20836563 CCGATCTGAT
20836573 CTTAGACTGGGAATGAACTCCACATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
20836599 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
20836625 C
1 C
20836626 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:20837116 original size:158 final size:158
Alignment explanation
Indices: 20836793--20837136 Score: 354
Period size: 158 Copynumber: 2.2 Consensus size: 158
20836783 AACTCTGTAT
*
20836793 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGGGCGTACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTACGAGCGCTCAG
* * * ** * * *
20836858 CCGATCGGAGAGGTAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCTCTACGTGCTATCGTCC
66 CCGATCGGAGAGGCAGAATACACAAGCCAAGGATCAGCCCGATCCCCCTCAACGTACTACCGTCC
* * *
20836923 CGCTACCACAACCCTTGGTCCCGTTGGG
131 CGCTACCACAACCCTCGATCCCGTTGGA
* * * * *
20836951 GCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTACGAGCGCTCAG
* * *** * *
20837016 CCGATCGGAGAGGCAGAATACGCAAGCCAAGGATCGGTTTGGTCCCTC-CAACGTACTACCGATC
66 CCGATCGGAGAGGCAGAATACACAAGCCAAGGATCAGCCCGATCCCCCTCAACGTACTACCG-TC
** * * *
20837080 GTGCTATCGCAACCCTCGAT-CTGATCT-GA
130 CCGCTACCACAACCCTCGATCCCG-T-TGGA
*
20837109 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
20837137 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 32, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
157 13 0.09
158 136 0.91
159 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTACGAGCGCTCAG
CCGATCGGAGAGGCAGAATACACAAGCCAAGGATCAGCCCGATCCCCCTCAACGTACTACCGTCC
CGCTACCACAACCCTCGATCCCGTTGGA
Found at i:20837586 original size:159 final size:157
Alignment explanation
Indices: 20837299--20837809 Score: 370
Period size: 159 Copynumber: 3.2 Consensus size: 157
20837289 CCCTCAATCT
* * * * * * * *
20837299 GGTCTGATCTTAGATTGGGAATGAAC-TCTATATGCCTAAGTCAACCCATGAAATGAGCATGCAG
1 GGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCATAAGCCAACCCACGAAACGAGCATGCGG
* * * * ** * * * *
20837363 GCGCTC-GACCGGCCA-AAGAGGTAGAATGCGTAAGTTAGGGATCGACCCG-GTCTCCTCCTACG
65 GCGCTCAG-CC-GACAGGAGAGGCAGAATGCGCAAGCCAAGGATCG-GCCGAGTC-CCCCCTGCG
*
20837425 TGCTGTCGATCCTGCTAACGCAACCCTTGGTTC
126 TGCTGTCGATCCTACTAACGCAACCCTTGG-TC
* * * *
20837458 GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCATCCCACGAAACGAGCGTTCGGG
1 GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGG
* * * * * * *
20837523 TGCTGAGCCGACTGGAGAGGTATAATGCGCAAGCCAGGGATCGTGTCGA-TCCCCCTCTGCGTGC
66 CGCTCAGCCGACAGGAGAGGCAGAATGCGCAAGCCAAGGATCG-GCCGAGTCCCCC-CTGCGTGC
** * ** *
20837587 TCCCGGTCCTACTGCCACAACCCTTGGTC
129 TGTCGATCCTACTAACGCAACCCTTGGTC
* * * ** * * * * * *
20837616 TGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTCAGCCAACCCATGAAACGGGCATGCG
1 GGTC-CGATCTTAGAC-TGGGAATGAACTTCGTATGCATAAGCCAACCCACGAAACGAGCATGCG
* * * * *
20837680 GGCGCTCAGTCGACAGGAGAGGCAGAATGCGTAAGCCAAGGATTGGCCTAGTCCCCCCTGCGTAC
64 GGCGCTCAGCCGACAGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCGAGTCCCCCCTGCGTGC
* * *
20837745 TGTCGATCCTACTATCGCAGCCCTCGGTC
129 TGTCGATCCTACTAACGCAACCCTTGGTC
20837774 TGGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGC
1 -GGTCCGATCTTAGACTGGGAATGAACTTC-GTATGC
20837810 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 73, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
157 2 0.01
158 62 0.23
159 200 0.75
160 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (157 bp):
GGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGG
CGCTCAGCCGACAGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCGAGTCCCCCCTGCGTGCTG
TCGATCCTACTAACGCAACCCTTGGTC
Found at i:20837812 original size:26 final size:26
Alignment explanation
Indices: 20837783--20837835 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20837773 CTGGTCCGAT
*
20837783 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20837809 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20837835 C
1 C
20837836 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20838053 original size:133 final size:133
Alignment explanation
Indices: 20837807--20838061 Score: 316
Period size: 133 Copynumber: 1.9 Consensus size: 133
20837797 GAACTCTGTA
** *
20837807 TGCTTAGACTGGGGATTAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
1 TGCTTAGACTGGAAATTAACTCCGTATGCCTAAGCCAAACCACAAAACGAGCGTGCGGGCACTCA
* *
20837872 GCCAGTCGGAGAGGCAGAATGCGCAAGCAAGGACCAGTCCGGTCCCCCCTGCGTGTTGTTGATCT
66 GCCAGTCGGAGAGGCAGAATACGCAAGCAAGGACCAGCCCGGTCCCCCCTGCGTGTTGTTGATCT
20837937 TGC
131 TGC
* * * * * *
20837940 TGCTTAGACT-GAAATTGAACTTCGTATGCCTAAGTCAAACCACGAAACGAGTGTTCGGGCACTG
1 TGCTTAGACTGGAAATT-AACTCCGTATGCCTAAGCCAAACCACAAAACGAGCGTGCGGGCACTC
* * * * *
20838004 AGTC-GATCGGAGAGGCATAATACGCAAGCTAGGCATCGGCCCGGTCCCCCTCTGCGTG
65 AGCCAG-TCGGAGAGGCAGAATACGCAAGCAAGG-ACCAGCCCGGTCCCCC-CTGCGTG
20838062 CCGTCAGTCC
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
132 5 0.05
133 77 0.75
134 13 0.13
135 7 0.07
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (133 bp):
TGCTTAGACTGGAAATTAACTCCGTATGCCTAAGCCAAACCACAAAACGAGCGTGCGGGCACTCA
GCCAGTCGGAGAGGCAGAATACGCAAGCAAGGACCAGCCCGGTCCCCCCTGCGTGTTGTTGATCT
TGC
Found at i:20838357 original size:475 final size:476
Alignment explanation
Indices: 20837466--20838374 Score: 1200
Period size: 475 Copynumber: 1.9 Consensus size: 476
20837456 TCGGTCCGAT
* ** **
20837466 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCATCCCACGAAACGAGCGTTCGGGTGCTGAGC
1 CTTAGACTGGAAATGAACTTCGTATGCATAAGTCAAACCACGAAACGAGCGTTCGGGCACTGAGC
* * * * *
20837531 CGACTGGAGAGGTATAATGCGCAAGCCAGGGATCGTGTCGATCCCCCTCTGCGTGCTCCCGGTCC
66 CGACTGGAGAGGCATAATACGCAAGCCAGGCATCGTGCCGATCCCCCTCTGCGTGCTCCCAGTCC
* * * *
20837596 TACTGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTCAGCCAA
131 CACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * ** * * *
20837661 CCCATGAAACGGGCATGCGGGCGCTCAGTCGACAGGAGAGGCAGAATGCGTAAGCCAAGGATTGG
196 CCCACGAAACGGGCATGCGGGCACTCAACCGACAGAAGAGGCAGAATGCGCAAGCCAAGGATCGG
* ** * * * **
20837726 CCTAGTCCCCCCTGCGTACTGTCGATCCTACTATCGCAGCCCTCGGTCTGGTCCGATCTTAGACT
261 CCCAGTCCCCCCTGCGTACTACCGATCCTACTATCACAACCCTCGATCCAGTCCGATCTTAGACT
*
20837791 GGGAATGAACTCTGTATGCTTAGACTGGGGATTAACTCCGTATGCCTAAGCCAACCCACAAAACG
326 GGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACG
* * *
20837856 AGCGTGCGGGCACTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCAAGGACCAGTCCGGTCCCCCC
391 AGCGCGCGGGCACTCAGCCAGTCGGAGAGACAGAATGAGCAAGCAAGGACCAGTCCGGTCCCCCC
20837921 TGCGTGTTGTTGATCTTGCTG
456 TGCGTGTTGTTGATCTTGCTG
* *
20837942 CTTAGACT-GAAATTGAACTTCGTATGCCTAAGTCAAACCACGAAACGAGTGTTCGGGCACTGAG
1 CTTAGACTGGAAA-TGAACTTCGTATGCATAAGTCAAACCACGAAACGAGCGTTCGGGCACTGAG
* * * *
20838006 TCGA-TCGGAGAGGCATAATACGCAAGCTAGGCATCG-GCCCGGTCCCCCTCTGCGTGC-CGTCA
65 CCGACT-GGAGAGGCATAATACGCAAGCCAGGCATCGTG-CCGATCCCCCTCTGCGTGCTC-CCA
* * *
20838068 GTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGGC-TGGAATGATCTCCCTATGCCTAAG
127 GTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * ** * * * *
20838132 CTAACCCACGAAATGGGTGTGCGGGCACTCAACCGGCCGAAGAGGCAGAATGTGCAAGCCGAGGA
192 CCAACCCACGAAACGGGCATGCGGGCACTCAACCGACAGAAGAGGCAGAATGCGCAAGCCAAGGA
* * *
20838197 TCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTACTATCACAACCCTTGATCCAGTCCGATCTTA
257 TCGGCCCAGTCCCCCCTGCGTACTACCGATCCTACTATCACAACCCTCGATCCAGTCCGATCTTA
* * * *
20838262 GACTGGGACTGAACT-TCGTATGCTTGGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
322 GACTGGGAATGAACTCT-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACA
* *
20838326 AAATGAGCGCGCGGGCACTCAGCCGGTCGGAGAGACAGAATGAGCAAGC
386 AAACGAGCGCGCGGGCACTCAGCCAGTCGGAGAGACAGAATGAGCAAGC
20838375 CAGGGATCGA
Statistics
Matches: 369, Mismatches: 59, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
474 1 0.00
475 233 0.63
476 135 0.37
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (476 bp):
CTTAGACTGGAAATGAACTTCGTATGCATAAGTCAAACCACGAAACGAGCGTTCGGGCACTGAGC
CGACTGGAGAGGCATAATACGCAAGCCAGGCATCGTGCCGATCCCCCTCTGCGTGCTCCCAGTCC
CACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCATGCGGGCACTCAACCGACAGAAGAGGCAGAATGCGCAAGCCAAGGATCGG
CCCAGTCCCCCCTGCGTACTACCGATCCTACTATCACAACCCTCGATCCAGTCCGATCTTAGACT
GGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACG
AGCGCGCGGGCACTCAGCCAGTCGGAGAGACAGAATGAGCAAGCAAGGACCAGTCCGGTCCCCCC
TGCGTGTTGTTGATCTTGCTG
Found at i:20838534 original size:343 final size:342
Alignment explanation
Indices: 20837955--20838666 Score: 869
Period size: 343 Copynumber: 2.1 Consensus size: 342
20837945 AGACTGAAAT
* * * ** * * *
20837955 TGAACTTCGTATGCCTAAGTCAAACCACGAAACGAGTGTTCGGGCACTGAGTCGATCGGAGAGGC
1 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCACTCAGCCGATCGGAGAGAC
* * * * *
20838020 ATAATACGCAAGCTAGGCATCGGCCCGGTCCCCCTCTGCGTGCCGTCAGTCCCGCTGCCACAACC
66 AGAATACGCAAGCCAGGCATCGACCCAGTCCCCCTCTGCGTGCCGTCAGTCCCACTGCCACAACC
* * * * * * * *
20838085 CTCGGTCCGACTGGGGCTTAGGCTGGAATGATCTCCCTATGCCTAAGCTAACCCACGAAATGGGT
131 CTCGATCCGACTAGGGCATAGACTGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGC
* * * * * *
20838150 GTGCGGGCACTCAACCGGCCGAAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCC-CCT
196 ATACGGGCACTCAACCGACCGAAGAGGCAGAATGAGCAAGCCAAGGATCGGCCCAG-CCCCTCCT
* * * *
20838214 GCGTGCTACCGATCCTACTATCACAACCCT-TGATCCAGTCCGATCTTAGACTGGGACTGAACTT
260 ACGTGCTACCGATCCTACTATCACAACCCTCAG-TCCAGTCCGATCTTAGACTGGGAATGAACTC
*
20838278 CGTATGCTTGGACTGGGGA
324 CGTATGCTTAGACTGGGGA
* *
20838297 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCGCGGGCACTCAGCCGGTCGGAGAGAC
1 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCACTCAGCCGATCGGAGAGAC
* * * *
20838362 AGAATGA-GCAAGCCAGGGATCGACCCAGTCTCCCTCTGCGTG-C-TACCGATCCCACTGCGACA
66 AGAAT-ACGCAAGCCAGGCATCGACCCAGTCCCCCTCTGCGTGCCGT-CAG-TCCCACTGCCACA
20838424 ACCCTCGATCCTG-CTAGGGCATAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAA
128 ACCCTCGATCC-GACTAGGGCATAGAC-TGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAA
* ** *
20838488 TGGGCATACGGGCGCTCAGTCGACCGAAGAGGCAGAATGAGCAAGCCAAGGATTGGCCCAGCCCC
191 TGGGCATACGGGCACTCAACCGACCGAAGAGGCAGAATGAGCAAGCCAAGGATCGGCCCAGCCCC
* * * * * *
20838553 TCCTACGTGCTACCGATCCTGCTGTCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAA
256 TCCTACGTGCTACCGATCCTACTATCACAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAA
20838618 CTCCGTATGCTTAGACTGGGGA
321 CTCCGTATGCTTAGACTGGGGA
* *
20838640 TGAACTCTGTATGCCTAAGTTAACCCA
1 TGAACTCCGTATGCCTAAGTCAACCCA
20838667 TTAATCGAGC
Statistics
Matches: 313, Mismatches: 50, Indels: 13
0.83 0.13 0.03
Matches are distributed among these distances:
340 1 0.00
341 3 0.01
342 124 0.40
343 184 0.59
344 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (342 bp):
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCACTCAGCCGATCGGAGAGAC
AGAATACGCAAGCCAGGCATCGACCCAGTCCCCCTCTGCGTGCCGTCAGTCCCACTGCCACAACC
CTCGATCCGACTAGGGCATAGACTGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGC
ATACGGGCACTCAACCGACCGAAGAGGCAGAATGAGCAAGCCAAGGATCGGCCCAGCCCCTCCTA
CGTGCTACCGATCCTACTATCACAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
TATGCTTAGACTGGGGA
Found at i:20838637 original size:26 final size:26
Alignment explanation
Indices: 20838601--20838653 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20838591 TCGGTCTGAT
20838601 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20838627 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20838653 C
1 C
20838654 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20839273 original size:26 final size:26
Alignment explanation
Indices: 20839235--20839284 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
20839225 GGCTCAAACT
*
20839235 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20839261 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
20839285 AGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20839813 original size:26 final size:26
Alignment explanation
Indices: 20839775--20839827 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20839765 CCCATCCAAT
20839775 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
20839801 CTTAGATAT-GGAATGAACTCCGTATG
1 CTTAGAT-TGGGAATGAACTCCGTATG
20839827 C
1 C
20839828 CTAAGCCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:20840571 original size:26 final size:26
Alignment explanation
Indices: 20840533--20840585 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20840523 TTCGGTCGAT
**
20840533 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
20840559 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
20840585 C
1 C
20840586 CTAAGCGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:20840668 original size:196 final size:197
Alignment explanation
Indices: 20840316--20840672 Score: 491
Period size: 196 Copynumber: 1.8 Consensus size: 197
20840306 CCTGCTGCCA
* ** *
20840316 CAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTTCGCATGCTTAGACTGGGGATAAAC
1 CAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGCATGCTTAGACACGGAATAAAC
* * * *
20840381 TCTGTATGCCTAAGTGAACCCATGAAATGAGCGTACGGACGCTCAGCCGATAGAAGAGACAGAAT
66 TCCGTATGCCTAAGCGAACCCACGAAATGAGCGTACGGACACTCAGCCGATAGAAGAGACAGAAT
*
20840446 GCACAAGCCAGGGATCGGTCCGGTCCCCCCTTGCTTGCTGCCTATCCTGCTGTTGGTCCTGCTGT
131 GCACAAGCCAGGGACCGGTCCGGTCCCCCCTTGCTTGCTGCCTATCCTGCTGTTGGTCCTGCTGT
20840511 TG
196 TG
* * * * * *
20840513 CAACCCTCGGTTCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGAATGAAC
1 CAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGCATGCTTAGACACGGAATAAAC
** * * * * *
20840577 TCCGTATGCCTAAGCGAACCCACGAAATGAGCGTGTGGGCACTTAGCCGATCGGAGAGGCAGAAT
66 TCCGTATGCCTAAGCGAACCCACGAAATGAGCGTACGGACACTCAGCCGATAGAAGAGACAGAAT
* *
20840642 GCATAAGCCGGGGACCGGTCCGGTCCCCCCT
131 GCACAAGCCAGGGACCGGTCCGGTCCCCCCT
20840673 ATGTGCTATT
Statistics
Matches: 136, Mismatches: 24, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
196 122 0.90
197 14 0.10
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (197 bp):
CAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGCATGCTTAGACACGGAATAAAC
TCCGTATGCCTAAGCGAACCCACGAAATGAGCGTACGGACACTCAGCCGATAGAAGAGACAGAAT
GCACAAGCCAGGGACCGGTCCGGTCCCCCCTTGCTTGCTGCCTATCCTGCTGTTGGTCCTGCTGT
TG
Found at i:20841203 original size:355 final size:352
Alignment explanation
Indices: 20840363--20841205 Score: 888
Period size: 355 Copynumber: 2.4 Consensus size: 352
20840353 ACTTCGCATG
* * * * * * *
20840363 CTTAGACTGGGGATAAACTCTGTATGCCTAAGTGAACCCATGAAATGAGCGTACGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCT-AAC
* * * * ** * * ***
20840428 CGATAGAAGAGACAGAATGCACAAGCCAGGGATCGGTCCGGTCCCCCCTTGCTTGCTGCCT-ATC
65 CGATCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCC-TGCATG-TTATTGATC
* * * * *
20840492 CTGCTGTTGGTCCTGCTGTTGCAACCCTCGGTTCGGTCGATCTTAGACTGGGAATGAACTCCGTA
128 CTACTGCTGGTCCTGCTATCGCAACCCTCGATTCGGTCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
20840557 TGCTTAGACACGGAATGAACTCCGTATGCCTAAGCGAACCCACGAAATGAGCGTGTGGGCACTTA
193 TGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * ** * *
20840622 GCCGATCGGAGAGGCAGAATGCATAAGCCGGGGACCGGTCCGGTCCCCCCTATGTGCTATTGATC
258 GCAGACCGAAGAGGCAGAATGCATAAACCGAGGACCGACCCGGTCCCCCCTACGTGCTATCGATC
* *
20840687 CTACTGCCGTAACCTTCGGTCTGGTCTGAT
323 CTACTGCCGTAACCTTCAGTCTGGTCCGAT
* * * * ** * *
20840717 CTTAGATTGGGAATGAACTCCATATGCGTAAGTCAACCCACGAAACAAGCATTCGGGCCCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCTAA-C
* * * * * * * * *
20840782 CGACCAAAGAGGCATAATGTGTAAG-TCGAGGATCGACCCGGTCCCCCTCTGCATGCTGTCGATC
65 CGATCGAAGAGGCATAATGCGCAAGCT-GGGGATCGGCCCGGTCCCCC-CTGCATGTTATTGATC
* *
20840846 CTACTGCTGGTCCTGCTATCGTAACCTTCGA-TCTGGTCTGATCTTAG-CTTGGGAATGAACTCC
128 CTACTGCTGGTCCTGCTATCGCAACCCTCGATTC-GGTC-GATCTTAGAC-TGGGAATGAACTCC
* * **
20840909 GTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGC
190 GTATGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
* *
20840974 TCAGCAGGCCGAAGAGGCAGAATGCATAAACCGAGGACCGACCCGGTCCCCCCTTACGTGCTGTC
255 TCAGCAGACCGAAGAGGCAGAATGCATAAACCGAGGACCGACCCGGTCCCCCC-TACGTGCTATC
** * *
20841039 GATCCTGTTGCTGTAACTCTT-AGTTTGGTCCGAT
319 GATCCTACTGCCGTAAC-CTTCAGTCTGGTCCGAT
*
20841073 CTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCT-AAC
* * *
20841138 CGATCGGAGAGGCATAATGCGCAAGCTGGGGA-CTGGCCCGGTCCCCCCTACGTGTTATTGATCC
65 CGATCGAAGAGGCATAATGCGCAAGCTGGGGATC-GGCCCGGTCCCCCCTGCATGTTATTGATCC
20841202 TACT
129 TACT
20841206 ACTGCAACCC
Statistics
Matches: 390, Mismatches: 87, Indels: 23
0.78 0.17 0.05
Matches are distributed among these distances:
353 3 0.01
354 118 0.30
355 142 0.36
356 121 0.31
357 6 0.02
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (352 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCTAACC
GATCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCATGTTATTGATCCTA
CTGCTGGTCCTGCTATCGCAACCCTCGATTCGGTCGATCTTAGACTGGGAATGAACTCCGTATGC
TTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCA
GACCGAAGAGGCAGAATGCATAAACCGAGGACCGACCCGGTCCCCCCTACGTGCTATCGATCCTA
CTGCCGTAACCTTCAGTCTGGTCCGAT
Found at i:20841537 original size:514 final size:513
Alignment explanation
Indices: 20840559--20841688 Score: 1405
Period size: 514 Copynumber: 2.2 Consensus size: 513
20840549 ACTCCGTATG
** *
20840559 CTTAGACACGGAATGAACTCCGTATGCCTAAG-CGAACCCACGAAATGAGCGTGT-GGGCACTTA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAATGAGCGT-TCGGGCACTGA
* ** * *
20840622 GCCGATCGGAGAGGCAGAATGCATAAGCCGGGGACCGGTCCGGTCCCCCCTATGTGCTATTGATC
64 GCCGATCGGAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCCTACGTGCTATTGATC
* * * ** *
20840687 CTACTGCCGTAACCTTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATGCGTAAGTCA
129 CTACTACCGCAACCTTCGGTCTGGTCTAATCTTAGACCGGGAATAAACTCCATATGCGTAAGTCA
* *** *
20840752 ACCCACGAAACAAGCATTCGGGCCCTAAGCCGACCAAAGAGGCATAATGTGTAAGTCGAGGATCG
194 ACCCACGAAACAAGCATTCGGGCACTAAGCCGACCAAAGAGGCATAATGCACAAGCCGAGGATCG
* * * *
20840817 ACCCGGTCCCCCTCTGCATGCTGTCGATCCTACTGCTGGTCCTGCTATCGTAACCTTCGATCTGG
259 ACCCGATCCCCCTCTGCATGCTATCGATCCTACTGCTGGTCCTGCTACCGCAACCTTCGATCTGG
* * *
20840882 TCTGATCTTAGCTTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
324 TCTGATCTTAGCTTAGGAATGAACTCCGTATGCTTAGACATGGAATCAACTCCGTATGCCTAAGC
* * *
20840947 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCAGGCCGAAGAGGCAGAATGCATAAACCGAGGAC
389 CAACCCACGAAACGAGCGTACGGGTGCTCAGCAGGCCGAAAAGGCAGAATGCACAAACCGAGGAC
* ** * **** *
20841012 CGACCCGGTCCCCCCTTACGTGCTGTCGATCCTGTTG-CTGTAACTCTT-AGTTTGGTCCGAT
454 CGACCCGGTCCCCCC-TACATGCTGTCGATCCTACTGTC-GAAAC-CTTCAGTCCAATCCAAT
* * * *
20841073 CTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAGC
* * *
20841138 CGATCGGAGAGGCATAATGCGCAAGCTGGGGACTGGCCCGGTCCCCCCTACGTGTTATTGATCCT
66 CGATCGGAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCCTACGTGCTATTGATCCT
* *
20841203 ACTACTGCAACCCTT-GGTCTGGTCTAATCTTAGACCGGGAATAAACTCCGTATGCGTAAGTCAA
131 ACTACCGCAA-CCTTCGGTCTGGTCTAATCTTAGACCGGGAATAAACTCCATATGCGTAAGTCAA
* ** * * * *
20841267 CCTACGAAATGAGCATTCGGGCACTGAGCTGACCAGAGAGGCATAATGCACAAGCC-AGGGATTG
195 CCCACGAAACAAGCATTCGGGCACTAAGCCGACCAAAGAGGCATAATGCACAAGCCGA-GGATCG
* * * * *
20841331 ACTCGATCTCTCTTTGCGTGCTATCGATCCTACTGCTGGTCCTGCTACCGCAACCTTC-AGTCTG
259 ACCCGATCCCCCTCTGCATGCTATCGATCCTACTGCTGGTCCTGCTACCGCAACCTTCGA-TCTG
*
20841395 GTCTGATCTTAGAC-TAGGAATGAACTCCGTATGCTTAGAGATGGAATCAACTCCGTATGCCTAA
323 GTCTGATCTTAG-CTTAGGAATGAACTCCGTATGCTTAGACATGGAATCAACTCCGTATGCCTAA
* * * ** * *
20841459 GCTAACCCACGAAATGAGCGTACGGGTGCTCAGCCGGTTGAAAAGGTAGAATGCACAAACCGGGG
387 GCCAACCCACGAAACGAGCGTACGGGTGCTCAGCAGGCCGAAAAGGCAGAATGCACAAACCGAGG
* * * *
20841524 ATCGACTCGGTCCCCCCTACATTCTGTCGATCCTACTGTCGAAACCTTCGGTCCAATCCAAT
452 ACCGACCCGGTCCCCCCTACATGCTGTCGATCCTACTGTCGAAACCTTCAGTCCAATCCAAT
** *
20841586 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTTCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAGC
* * * *
20841651 C-ATTCGGAGAGCCATAATGCGTAAGTCGGGGATCGGCC
66 CGA-TCGGAGAGGCATAATGCGCAAGCCGGGGACCGGCC
20841689 TGATCCCCTT
Statistics
Matches: 523, Mismatches: 84, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
512 4 0.01
513 119 0.23
514 394 0.75
515 6 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (513 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAGC
CGATCGGAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCCTACGTGCTATTGATCCT
ACTACCGCAACCTTCGGTCTGGTCTAATCTTAGACCGGGAATAAACTCCATATGCGTAAGTCAAC
CCACGAAACAAGCATTCGGGCACTAAGCCGACCAAAGAGGCATAATGCACAAGCCGAGGATCGAC
CCGATCCCCCTCTGCATGCTATCGATCCTACTGCTGGTCCTGCTACCGCAACCTTCGATCTGGTC
TGATCTTAGCTTAGGAATGAACTCCGTATGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCGTACGGGTGCTCAGCAGGCCGAAAAGGCAGAATGCACAAACCGAGGACCG
ACCCGGTCCCCCCTACATGCTGTCGATCCTACTGTCGAAACCTTCAGTCCAATCCAAT
Found at i:20841751 original size:514 final size:514
Alignment explanation
Indices: 20840559--20842066 Score: 1267
Period size: 514 Copynumber: 3.0 Consensus size: 514
20840549 ACTCCGTATG
** ** *
20840559 CTTAGACACGGAATGAACTCCGTATGCCTAAG-CGAACCCACGAAATGAGCGTGT-GGGCACTTA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACAAGCGT-TCGGGCACTGA
* * * ** * * * * ** * **
20840622 GCCGATCGGAGAGGCAGAATGCATAAGCCGGGGACCGGTCCGGTCCCCCCTATGTGCTATTGATC
64 ACCGATCGGAGAGCCATAATGCGCAAGCTGGGGACTGGCCCGATCCCCCCTACATGTTACCGATC
* ** * * * * * **
20840687 CTACTGCCGTAA-CCTTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATGCGTAAGTC
129 CTACTACCACAACCCTT-AGTCTCGACTAAGCTTAGACAGGGAATGAACTCCATATGCGTAAGTC
* *** *
20840751 AACCCACGAAACAAGCATTCGGGCCCTAAGCCGACCAAAGAGGCATAATGTGTAAGTCGAGGATC
193 AACCCACGAAACAAGCATTCGGGCACTAAGCCGACCAAAGAGGCATAATGCACAAGCCGAGGATC
* * * *
20840816 GACCCGGTCCCCCTCTGCATGCTGTCGATCCTACTGCTGGTCCTGCTATCGTAACCTTCGATCTG
258 GACCCGATCCCCCTCTGCATGCTATCGATCCTACTGCTGGTCCTGCTACCGCAACCTTCGATCTG
* * *
20840881 GTCTGATCTTAGCTTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAG
323 GTCTGATCTTAGCTTAGGAATGAACTCCGTATGCTTAGACATGGAATCAACTCCGTATGCCTAAG
* * *
20840946 CCAACCCACGAAACGAGCGTGCGGGTGCTCAGCAGGCCGAAGAGGCAGAATGCATAAACCGAGGA
388 CCAACCCACGAAACGAGCGTACGGGTGCTCAGCAGGCCGAAAAGGCAGAATGCACAAACCGAGGA
* ** * **** *
20841011 CCGACCCGGTCCCCCCTTACGTGCTGTCGATCCTGTTGCTGTAACTCTTAGTTTGGTCCGAT
453 CCGACCCGGTCCCCCCTTACATGCTGTCGATCCTACTGCTGAAACTCTTAGTCCAATCCAAT
* * ** *
20841073 CTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCACTGAAC
* * * **
20841138 CGATCGGAGAGGCATAATGCGCAAGCTGGGGACTGGCCCGGTCCCCCCTACGTGTTATTGATCCT
66 CGATCGGAGAGCCATAATGCGCAAGCTGGGGACTGGCCCGATCCCCCCTACATGTTACCGATCCT
** * * * * * * *
20841203 ACTACTGCAACCCTTGGTCTGGTCTAATCTTAGACCGGGAATAAACTCCGTATGCGTAAGTCAAC
131 ACTACCACAACCCTTAGTCTCGACTAAGCTTAGACAGGGAATGAACTCCATATGCGTAAGTCAAC
* ** * * * *
20841268 CTACGAAATGAGCATTCGGGCACTGAGCTGACCAGAGAGGCATAATGCACAAGCC-AGGGATTGA
196 CCACGAAACAAGCATTCGGGCACTAAGCCGACCAAAGAGGCATAATGCACAAGCCGA-GGATCGA
* * * * *
20841332 CTCGATCTCTCTTTGCGTGCTATCGATCCTACTGCTGGTCCTGCTACCGCAACCTTC-AGTCTGG
260 CCCGATCCCCCTCTGCATGCTATCGATCCTACTGCTGGTCCTGCTACCGCAACCTTCGA-TCTGG
*
20841396 TCTGATCTTAGAC-TAGGAATGAACTCCGTATGCTTAGAGATGGAATCAACTCCGTATGCCTAAG
324 TCTGATCTTAG-CTTAGGAATGAACTCCGTATGCTTAGACATGGAATCAACTCCGTATGCCTAAG
* * * ** * *
20841460 CTAACCCACGAAATGAGCGTACGGGTGCTCAGCCGGTTGAAAAGGTAGAATGCACAAACCGGGGA
388 CCAACCCACGAAACGAGCGTACGGGTGCTCAGCAGGCCGAAAAGGCAGAATGCACAAACCGAGGA
* * * *
20841525 TCGACTCGGTCCCCCC-TACATTCTGTCGATCCTACTG-TCGAAAC-CTTCGGTCCAATCCAAT
453 CCGACCCGGTCCCCCCTTACATGCTGTCGATCCTACTGCT-GAAACTCTT-AGTCCAATCCAAT
* *
20841586 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTTCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCACTGAAC
* * * * *
20841651 C-ATTCGGAGAGCCATAATGCGTAAG-TCGGGGA-TCGGCCTGATCCCCTTCTGCATGTTACCGG
66 CGA-TCGGAGAGCCATAATGCGCAAGCT-GGGGACT-GGCCCGATCCCC-CCTACATGTTACCGA
* * * * * *
20841713 TCCTGCTGCCACAACCCTTAGTC-CGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
127 TCCTACTACCACAACCCTTAGTCTCGACTA-AGCTTAGACAGGGAATGAACTCCATATGCGTAAG
* * ** ** * ** * * * ** *
20841777 CCAACCCACAAAACGGGTGTGCGGGTGCTCAGCCGACCAGAGAGGCAGAATGCACAAGTTGGGGA
191 TCAACCCACGAAACAAGCATTCGGGCACTAAGCCGACCAAAGAGGCATAATGCACAAGCCGAGGA
* * * * *
20841842 TTGGCCC-AGT-CCCCTCTGCGTGCTGTCGA---T-C--CT-G--CTG-T--CGCAACCCTCGAT
256 TCGACCCGA-TCCCCCTCTGCATGCTATCGATCCTACTGCTGGTCCTGCTACCGCAACCTTCGAT
* * * * * *
20841893 CCGGTCTGATCTTAGAC-TGGGAATGAACTACGTATGCTTAGA-TTGGGGATGAACTCCGTATGC
320 CTGGTCTGATCTTAG-CTTAGGAATGAACTCCGTATGCTTAGACAT-GGAATCAACTCCGTATGC
* ** * * * * * * * *
20841956 CTAAGTCAACCCATAAAACAAGTGTGCGAGCGCTCAGCCA-GCCGGAGAGGCAGAATGCACAAGC
383 CTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG-CAGGCCGAAAAGGCAGAATGCACAAAC
** * * * * * *
20842020 CGAGGATTGGCTCGATCCCCCCTTGCGTGCTGTCGATCCTGCTGCTG
447 CGAGGACCGACCCGGTCCCCCCTTACATGCTGTCGATCCTACTGCTG
20842067 GTCCTGCTGC
Statistics
Matches: 818, Mismatches: 156, Indels: 52
0.80 0.15 0.05
Matches are distributed among these distances:
500 1 0.00
501 128 0.16
502 20 0.02
503 2 0.00
504 3 0.00
506 1 0.00
507 2 0.00
509 1 0.00
510 1 0.00
512 7 0.01
513 145 0.18
514 501 0.61
515 6 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (514 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCACTGAAC
CGATCGGAGAGCCATAATGCGCAAGCTGGGGACTGGCCCGATCCCCCCTACATGTTACCGATCCT
ACTACCACAACCCTTAGTCTCGACTAAGCTTAGACAGGGAATGAACTCCATATGCGTAAGTCAAC
CCACGAAACAAGCATTCGGGCACTAAGCCGACCAAAGAGGCATAATGCACAAGCCGAGGATCGAC
CCGATCCCCCTCTGCATGCTATCGATCCTACTGCTGGTCCTGCTACCGCAACCTTCGATCTGGTC
TGATCTTAGCTTAGGAATGAACTCCGTATGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCGTACGGGTGCTCAGCAGGCCGAAAAGGCAGAATGCACAAACCGAGGACCG
ACCCGGTCCCCCCTTACATGCTGTCGATCCTACTGCTGAAACTCTTAGTCCAATCCAAT
Found at i:20841939 original size:26 final size:26
Alignment explanation
Indices: 20841903--20841955 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20841893 CCGGTCTGAT
20841903 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* * *
20841929 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
20841955 C
1 C
20841956 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:20842550 original size:158 final size:157
Alignment explanation
Indices: 20842125--20842553 Score: 413
Period size: 157 Copynumber: 2.7 Consensus size: 157
20842115 AACTCTATAT
* *
20842125 GCTTAGACATGAAGTGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGAAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
20842190 TC-GATCGGAGAGGTAGAACGCGTAAG-CTGGGGATCGGCCCGGTCTCCCCTGCGTGCTGTCGAT
66 CCGGCT-GGAGAGGCAGAATGCGTAAGTC-GGGGATCGGCTCGGTC-CCCCTGCGTGCTGTCGAT
* * *
20842253 CCTGCTGTCGCAACCCTCGATCTGGTCTGA
128 CCCGCTGCCACAACCCTCGATCTGGTCTGA
* * * * * * * * * *
20842283 TCTTAGGC-TGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAATGAGTGTTCAGGTGCTGA
1 GCTTAGACAT-GAAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
20842346 GCTGGCCGGAGAGCCATAATGCGCAAGTTGGGGATCCGCTCAGTCCCCATCT-CGTGCTGTC-AG
65 GCCGGCTGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCC--CTGCGTGCTGTCGA-
* *
20842409 TCCCGCTGCCACAACCCTCGGTCTGG-CTGGG
127 TCCCGCTGCCACAACCCTCGATCTGGTCT-GA
* * * *
20842440 GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGAAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
**
20842505 CCGGCTGGAGAGGCAGAATGCGTAAGTCGATGATCGGCTCGGTCCCCCT
66 CCGGCTGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCCCT
20842554 TACGGGCTAC
Statistics
Matches: 208, Mismatches: 54, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
156 8 0.04
157 112 0.54
158 88 0.42
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGAAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCTGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCCCTGCGTGCTGTCGATCCC
GCTGCCACAACCCTCGATCTGGTCTGA
Found at i:20844473 original size:26 final size:26
Alignment explanation
Indices: 20844435--20844487 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20844425 GGCTCAAACT
20844435 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTGCATG
*
20844461 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGCATG
20844487 C
1 C
20844488 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:20844807 original size:26 final size:26
Alignment explanation
Indices: 20844778--20844830 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20844768 CTGATCCGAT
20844778 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
20844804 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
20844830 C
1 C
20844831 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:20845004 original size:26 final size:26
Alignment explanation
Indices: 20844975--20845027 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20844965 TCGGTCCGAT
*
20844975 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20845001 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20845027 C
1 C
20845028 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20845073 original size:197 final size:197
Alignment explanation
Indices: 20844700--20845061 Score: 521
Period size: 197 Copynumber: 1.8 Consensus size: 197
20844690 CGAGAGGCAG
* * * * **
20844700 AATGCGCAAGCCGGGGATCGGCTCGGTCCCACCTACGTGCTGTCGATCCTGCTGTCACAACCCTC
1 AATGCACAAGCCGGGGATCGACCCGATCCCACCTACGTGCTACCGATCCTGCTGTCACAACCCTC
*
20844765 GGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATG
66 GGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
20844830 CCTAACTCAACCCACGAAACGAGCGTACGGGCACTCAGTCGGTCGAAAAGGCCGGTCGAAGAGAC
131 CCTAACTCAAACCACGAAACGAGCATACGGGCACTCAGTCGGTCGAAAAGGCCGGTCGAAGAGAC
20844895 AA
196 AA
* * *
20844897 AATGCACAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTG-CTGCAACCCT
1 AATGCACAAGCCGGGGATCGACCCGATCCCACCTACGTGCTACCGATCCTGCTGTC-ACAACCCT
* * * *
20844961 TGGT-TCGGTCCGATCTTAGAGTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
65 CGGTCT-GATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
20845025 TGCCTAAGTCAAACCATGAAACGAGCATTCGGGCACT
129 TGCCTAACTCAAACCACGAAACGAGCATACGGGCACT
20845062 GAGCAGGTCG
Statistics
Matches: 144, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
196 2 0.01
197 142 0.99
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (197 bp):
AATGCACAAGCCGGGGATCGACCCGATCCCACCTACGTGCTACCGATCCTGCTGTCACAACCCTC
GGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAACTCAAACCACGAAACGAGCATACGGGCACTCAGTCGGTCGAAAAGGCCGGTCGAAGAGAC
AA
Found at i:20845346 original size:26 final size:26
Alignment explanation
Indices: 20845317--20845369 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20845307 CCAGTCTGAT
20845317 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
20845343 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
20845369 C
1 C
20845370 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:20846158 original size:26 final size:26
Alignment explanation
Indices: 20846120--20846172 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20846110 CTGGTTCGAT
*
20846120 CTTAGATTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
* * *
20846146 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
20846172 C
1 C
20846173 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:20846284 original size:12 final size:12
Alignment explanation
Indices: 20846263--20846304 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
20846253 CCCTCCTGTG
*
20846263 TGCTGTTGGTCT
1 TGCTGCTGGTCT
20846275 TGCTGCTGGTCT
1 TGCTGCTGGTCT
*
20846287 TGCTGCCGGTCT
1 TGCTGCTGGTCT
20846299 TGCTGC
1 TGCTGC
20846305 CGCAACCCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.00, C:0.26, G:0.33, T:0.40
Consensus pattern (12 bp):
TGCTGCTGGTCT
Found at i:20846357 original size:26 final size:26
Alignment explanation
Indices: 20846328--20846380 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20846318 CCGGTCCGAT
20846328 CTTAGACCA-GGAATGAACTCCGTATG
1 CTTAGA-CATGGAATGAACTCCGTATG
*
20846354 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20846380 C
1 C
20846381 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20846476 original size:208 final size:208
Alignment explanation
Indices: 20846093--20846476 Score: 490
Period size: 208 Copynumber: 1.8 Consensus size: 208
20846083 ACCGATCCTA
* * ** * *
20846093 CTGCCGCAACCCTCGATCTGGTTCGATCTTAGATTAGGGATGAACTCCATATGCTTAGACTGGGG
1 CTGCCGCAACCCTCGATCCGGTCCGATCTTAGACCAGGAATGAACTCCATATGCTTAGACTGGGA
* * **
20846158 ATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACCGGTCGGAGAGG
66 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAACCGACCGGAGAGG
* * *
20846223 CAGAATGCACAGACCAAGGATCGACCCGATCCCTCCTGTGTGCTGTTGGTCTTGCTGCTGGTCTT
131 CAGAATGCACAGACCAAGGATCGACCCAATCCCCCCTGCGTGCTGTTGGTCTTGCTGCTGGTCTT
20846288 GCTGCCGGTCTTG
196 GCTGCCGGTCTTG
* * *
20846301 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACCAGGAATGAACTCCGTATGCTTAGACAT-TG
1 CTGCCGCAACCCTCGATCCGGTCCGATCTTAGACCAGGAATGAACTCCATATGCTTAGAC-TGGG
* * *
20846365 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTG-TACAGCCGACCGGAGA
65 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCT-CAACCGACCGGAGA
* * *
20846429 GGTAGAATG-AGCA-AGCCGAGGATC-AGCCTAATCCCCCCTGCGTGCTGT
129 GGCAGAATGCA-CAGA-CCAAGGATCGA-CCCAATCCCCCCTGCGTGCTGT
20846477 CTATCCTACT
Statistics
Matches: 149, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
207 4 0.03
208 144 0.97
209 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (208 bp):
CTGCCGCAACCCTCGATCCGGTCCGATCTTAGACCAGGAATGAACTCCATATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAACCGACCGGAGAGG
CAGAATGCACAGACCAAGGATCGACCCAATCCCCCCTGCGTGCTGTTGGTCTTGCTGCTGGTCTT
GCTGCCGGTCTTG
Found at i:20846653 original size:12 final size:12
Alignment explanation
Indices: 20846638--20846672 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
20846628 GTGCTGTTGA
*
20846638 TCCTGCTACTGG
1 TCCTGCTACCGG
20846650 TCCTGCTACCGG
1 TCCTGCTACCGG
20846662 TCCTGCTACCG
1 TCCTGCTACCG
20846673 CAACCCTCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.09, C:0.40, G:0.23, T:0.29
Consensus pattern (12 bp):
TCCTGCTACCGG
Found at i:20846723 original size:26 final size:26
Alignment explanation
Indices: 20846694--20846745 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20846684 CTGGTCCGAT
*
20846694 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
20846720 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20846746 ACTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20849905 original size:26 final size:26
Alignment explanation
Indices: 20849854--20849906 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20849844 GTTGGCTTAG
* *
20849854 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATGCCTAA
20849880 GCATACGGAGCTCATTCCCA-GCCTAA
1 GCATACGGAGCTCATT-CCATGCCTAA
20849906 G
1 G
20849907 AGTTTGAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATGCCTAA
Found at i:20850860 original size:26 final size:26
Alignment explanation
Indices: 20850831--20850886 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
20850821 TGGGTTGGCT
*
20850831 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
20850857 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
20850883 TAAG
1 TAAG
20850887 ATCGGACCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:20851065 original size:26 final size:26
Alignment explanation
Indices: 20851029--20851078 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20851019 GTTGACGTAG
20851029 GCATACGGAGTTCATCCCCAGTCTTA
1 GCATACGGAGTTCATCCCCAGTCTTA
* *
20851055 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
20851079 AAGATCAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTTA
Found at i:20851440 original size:158 final size:157
Alignment explanation
Indices: 20851250--20851545 Score: 333
Period size: 157 Copynumber: 1.9 Consensus size: 157
20851240 CCCCAGTCGA
* * * * * *
20851250 ATCGAGGGTTGTGGCAGTGGGACCGGCTGCACGTAGAAAGGGATCAGATCGATCCTAG-CTTACG
1 ATCGAGGGTTGCGGCAATAGGACCGACAGCACGCAG--AGGGATCAGATCGATCCTAGACTTACG
* * ** * * * *
20851314 CATTATGCCTTTTCAGTTTGTTCAGTGCCCGAATGTTCATTTCGTGAGTTGACTTAGGCATACGG
64 CATTATGCCTCTCCAGTCGGTTCAGCGCCCGAACGCTCATTTCGTGAGTTGACTTAGGCATACAG
20851379 AGTTCATTCCCAATCTAAGATCAGACCGC
129 AGTTCATTCCCAATCTAAGATCAGACCGC
* * * * *
20851408 ATCGAGGGTTGCGGCAATAGGATCGACAGCACGCAGGGGGATCTGGTCGATCCTCGACTTACGCA
1 ATCGAGGGTTGCGGCAATAGGACCGACAGCACGCAGAGGGATCAGATCGATCCTAGACTTACGCA
* * * * * * *
20851473 TTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAG
66 TTATGCCTCTCCAGTCGGTTCAGCGCCCGAACGCTCATTTCGTGAGTTGACTTAGGCATACAGAG
20851538 TTCATTCC
131 TTCATTCC
20851546 ATGTCTAAGC
Statistics
Matches: 111, Mismatches: 26, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
156 16 0.14
157 66 0.59
158 29 0.26
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.27
Consensus pattern (157 bp):
ATCGAGGGTTGCGGCAATAGGACCGACAGCACGCAGAGGGATCAGATCGATCCTAGACTTACGCA
TTATGCCTCTCCAGTCGGTTCAGCGCCCGAACGCTCATTTCGTGAGTTGACTTAGGCATACAGAG
TTCATTCCCAATCTAAGATCAGACCGC
Found at i:20851533 original size:157 final size:157
Alignment explanation
Indices: 20851051--20851554 Score: 394
Period size: 158 Copynumber: 3.2 Consensus size: 157
20851041 CATCCCCAGT
* * * * **
20851051 CTTA-GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTACAACAGA-AGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCA-ATAGGA
* * * * ** **
20851114 TTGGTAACACGTAAGGGGGA-CTAGG-CTGATCCTCGACTTACGCATTCTGCCTCTCTGACCAAC
65 TCGGCAGCACG-AAGGGGGATCT-GGTC-GATCCTCGACTTACGCATTCTGCCTCTCCGGTCAGT
* * * *
20851177 TGAGCACTCGCATGCCCGTTTCATGGGTTGG
127 TGAGCGCCCGCATGCTCGTTTCGTGGGTTGG
* * ** * * * *
20851208 CTTAGGCATAGGGAGTTTATT-CCATGTCTAAGCCCCAG-TCGAATCGAGGGTTGTGGCAGTGGG
1 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAATCGAGGGTTGCGGCAATAGG
* * ** * * * * * * * **
20851271 ACCGGCTGCACGTAGAAAGGGATCAGATCGATCCTAG-CTTACGCATTATGCCTTTTCAGTTTGT
64 ATCGGCAGCACG-A-AGGGGGATCTGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCAGT
* * * * * * *
20851335 TCAGTGCCCGAATGTTCATTTCGTGAGTTGA
127 TGAGCGCCCGCATGCTCGTTTCGTGGGTTGG
* *
20851366 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGCATCGAGGGTTGCGGCAATAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAATAGGAT
* * *
20851431 CGACAGCACGCAGGGGGATCTGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGTTGAG
66 CGGCAGCACGAAGGGGGATCTGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCAGTTGAG
*
20851496 CGCCCGCACGCTCGTTTCGTGGGTTGG
131 CGCCCGCATGCTCGTTTCGTGGGTTGG
*
20851523 CTTAGGCATACAGAGTTCATT-CCATGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
20851555 CATATGGAGT
Statistics
Matches: 256, Mismatches: 80, Indels: 22
0.72 0.22 0.06
Matches are distributed among these distances:
156 20 0.08
157 80 0.31
158 135 0.53
159 19 0.07
160 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.26
Consensus pattern (157 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAATAGGAT
CGGCAGCACGAAGGGGGATCTGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCAGTTGAG
CGCCCGCATGCTCGTTTCGTGGGTTGG
Found at i:20851969 original size:159 final size:159
Alignment explanation
Indices: 20851650--20852068 Score: 378
Period size: 159 Copynumber: 2.6 Consensus size: 159
20851640 AGGGACCGAT
* * * * * * * ** * * * *
20851650 CGATCCTCGGCTTACGCATTCTGCCTCTCCAACTGACTGAGTGCCCGCACGCCCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTACGACCGACTCAACGCCCGAACGCTCATTTCATGGGT
* * *
20851715 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCGG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTATGGCAGCAG
* *
20851780 GACAGGCAGCACCTAGAGGGAGAACGGGC
131 GACAGACAGCACCTAGAGGGAGAACAGGC
* * * *
20851809 CGATCCCTGGCTTGCGTATTATGCCTCTACGACCGACTCAGCGCCCGAACGCTCATTTTATGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTACGACCGACTCAACGCCCGAACGCTCATTTCATGGGT
* ** * *
20851874 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGAACTGAGGGTTATGGCAGC
66 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGAACCGAGGGTTATGGCAGC
* * * *
20851937 AGGATC-GACAGCTCGTA-AGGGGGGATCAGGC
129 AGGA-CAGACAGCACCTAGA-GGGAGAACAGGC
* * * * * * * * * * * *
20851968 CGGTCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAATGCCCGCACGCTCGTTTCGTGTGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTACGACCGACTCAACGCCCGAACGCTCATTTCATGGGT
*
20852033 TGGCTTAGGCATACGGAGTTCATACCATGTCTAAGC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20852069 ATATGGAGTT
Statistics
Matches: 207, Mismatches: 47, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
158 6 0.03
159 197 0.95
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CGATCCCCGGCTTGCGCATTATGCCTCTACGACCGACTCAACGCCCGAACGCTCATTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTATGGCAGCAG
GACAGACAGCACCTAGAGGGAGAACAGGC
Found at i:20853146 original size:159 final size:157
Alignment explanation
Indices: 20852791--20853184 Score: 402
Period size: 159 Copynumber: 2.5 Consensus size: 157
20852781 CACAGTCTAA
* * * * * * **
20852791 GCATATGGAGTCCATTCCTAGCCTAAGATCAGA-TCGGATCGAGGGTTACGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * ** *
20852855 AGCATGCAGGGGGGATCGACTGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTGCC
65 AGCATGCAGGGGGGATCGACTGATCCCCGACTTGCGCATTATGCCTCTTCGACCGACTGAAAGCA
* * *
20852920 CGCATGCCCGTTTCGTGGGTTGGCTTAG
130 CGAACGCCCGTTTCGTGGGTTGACTTAG
* * * **
20852948 GCATAGGGAGTTCATT-CCATGTCTAAG-TCCTAG-CCGGACCGAGGGTTGTGGCAGTGGGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT-C-AGACTGGACCGAGGGTTGCGGCAGCAGGATCG
* * * *
20853010 ACAGCATGCAGAGGGGGACCTG-GTCGATCCCCGACTTGCGTATTATGCCTCTTCGGCCGACTGA
63 ACAGCATGCAG-GGGGGATC-GACT-GATCCCCGACTTGCGCATTATGCCTCTTCGACCGACTGA
*
20853074 AAGCACGAACGCTCGTTTCGTGGGTTGACTTAG
125 AAGCACGAACGCCCGTTTCGTGGGTTGACTTAG
* *
20853107 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* *
20853172 GCACGCCGGGGGG
66 GCATGCAGGGGGG
20853185 GATTGGGCCG
Statistics
Matches: 191, Mismatches: 36, Indels: 19
0.78 0.15 0.08
Matches are distributed among these distances:
156 3 0.02
157 52 0.27
158 17 0.09
159 115 0.60
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGGGGGGATCGACTGATCCCCGACTTGCGCATTATGCCTCTTCGACCGACTGAAAGCAC
GAACGCCCGTTTCGTGGGTTGACTTAG
Found at i:20853200 original size:159 final size:159
Alignment explanation
Indices: 20852832--20853291 Score: 378
Period size: 159 Copynumber: 2.9 Consensus size: 159
20852822 GATCGGATCG
* * ** * * * * *
20852832 AGGGTTACGGCAGCAGGATCGGTAGCATGCAG-GGGGGATC-GACTGATCCCCGGCTTGCGCATT
1 AGGGTTGCGGCAACAGGATCGACAGCACGCAGAGGGGGACCTGGCCGATCCCCAGCTTGCGCATT
* ** * ** * * * * * *
20852895 CTGCCTCTTCGATCGGCTGAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
66 ATGCCTCTTCGGCCGACTGAAAGCACGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*
20852960 CATTCCATGTCTAAGTCCTAGCCGGACCG
131 CATTCCATGTCTAAGTCCTAGCCGGACCA
* *** * * *
20852989 AGGGTTGTGGCAGTGGGATCGACAGCATGCAGAGGGGGACCTGGTCGATCCCC-GACTTGCGTAT
1 AGGGTTGCGGCAACAGGATCGACAGCACGCAGAGGGGGACCTGGCCGATCCCCAG-CTTGCGCAT
20853053 TATGCCTCTTCGGCCGACTGAAAGCACGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
65 TATGCCTCTTCGGCCGACTGAAAGCACGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
20853118 TCATTCCCA-GTCTAAGAT-C-AGACTGGACCA
130 TCATT-CCATGTCTAAG-TCCTAG-CCGGACCA
* * * *
20853148 AGGGTTGCGGCAACAGGATCGACAGCACGCCGGGGGGGA-TTGGGCCGGTCCCCAGCTTGCGCAT
1 AGGGTTGCGGCAACAGGATCGACAGCACGCAGAGGGGGACCT-GGCCGATCCCCAGCTTGCGCAT
* ** *** * * ** * * * * *
20853212 TCTGCCTCCCCCATCAATTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTT-GGCATATGGAGT
65 TATGCCTCTTCGGCCGACTGAAAGCACGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
20853276 TCATTCCATGTCTAAG
130 TCATTCCATGTCTAAG
20853292 CATACGGAGT
Statistics
Matches: 243, Mismatches: 51, Indels: 17
0.78 0.16 0.05
Matches are distributed among these distances:
157 29 0.12
158 34 0.14
159 175 0.72
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (159 bp):
AGGGTTGCGGCAACAGGATCGACAGCACGCAGAGGGGGACCTGGCCGATCCCCAGCTTGCGCATT
ATGCCTCTTCGGCCGACTGAAAGCACGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCATGTCTAAGTCCTAGCCGGACCA
Found at i:20853294 original size:26 final size:26
Alignment explanation
Indices: 20853265--20853317 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20853255 GGTTGGCTTG
*
20853265 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20853291 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20853317 G
1 G
20853318 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20853429 original size:13 final size:13
Alignment explanation
Indices: 20853411--20853450 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
20853401 TGCACATTCT
20853411 GCCTCTCCGATCG
1 GCCTCTCCGATCG
20853424 GCCTCTCCGATCG
1 GCCTCTCCGATCG
20853437 GCCTCTCCGATCG
1 GCCTCTCCGATCG
20853450 G
1 G
20853451 TTGAGCGCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.07, C:0.45, G:0.25, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:20853518 original size:26 final size:26
Alignment explanation
Indices: 20853488--20853540 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20853478 GTTGACTTAG
20853488 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20853514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20853540 G
1 G
20853541 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20853869 original size:26 final size:26
Alignment explanation
Indices: 20853833--20853883 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20853823 TGGCTTAGGT
20853833 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
20853859 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
20853884 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:20854588 original size:26 final size:26
Alignment explanation
Indices: 20854552--20854602 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
20854542 GTTGACTTAG
20854552 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20854578 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
20854603 GGATCAGACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20854932 original size:26 final size:26
Alignment explanation
Indices: 20854896--20854948 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20854886 GTTGGCTTAG
**
20854896 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20854922 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20854948 G
1 G
20854949 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20856017 original size:26 final size:26
Alignment explanation
Indices: 20855988--20856040 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20855978 GTTGAGTTAG
20855988 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
20856014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20856040 G
1 G
20856041 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20856367 original size:26 final size:26
Alignment explanation
Indices: 20856337--20856389 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20856327 GTTGGCTTAG
20856337 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20856363 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20856389 G
1 G
20856390 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20857095 original size:26 final size:26
Alignment explanation
Indices: 20857059--20857111 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20857049 GTTGACTTAG
*
20857059 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20857085 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20857111 G
1 G
20857112 ATTAGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20857452 original size:26 final size:26
Alignment explanation
Indices: 20857402--20857454 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20857392 GTTGGCTTAG
* ***
20857402 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20857428 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
20857454 G
1 G
20857455 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:20857647 original size:26 final size:26
Alignment explanation
Indices: 20857611--20857663 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20857601 GTTGACTTAG
* *
20857611 GCATATGGAGTTCGTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20857637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20857663 G
1 G
20857664 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20858189 original size:26 final size:26
Alignment explanation
Indices: 20858111--20858180 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
20858101 GTTGGCTTAG
20858111 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20858137 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
20858163 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
20858181 CAATCTAAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:20865752 original size:26 final size:26
Alignment explanation
Indices: 20865716--20865766 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20865706 TGACTTAGGC
20865716 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
20865742 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
20865767 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:20866048 original size:159 final size:158
Alignment explanation
Indices: 20865742--20866242 Score: 403
Period size: 159 Copynumber: 3.2 Consensus size: 158
20865732 CAGTCTAAGT
* * * * *
20865742 ATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCAAGGG-T-TACGACAGCAGGATCGA
1 ATACGGAGTTCATT-CCATGTCTAAGCAGCAGACAGAATCGAGGGTTGTA-G-CAGTAGGATCGA
* * * * * * * * * *
20865803 CAGCACGTAGGGGGAACC-TGATCGATCCCCGGCTTGCGCATTCTGCCTCTACGGCCGACTGAGC
63 CAGCACGCAGGGGGGACCGGGCT-GATCCCCGGCTTGTGCA-TATGCCTCTCCGACCGGCTCAGC
* * **
20865867 GCCCGCACGC-CTGTTTTGTGGGTTGGCTTAGGC
126 GCCCACACGCTC-ATTTCATGGGTTGGCTTAGGC
* * * * * * **
20865900 ATAGGGAGTTCATTCCATGTCGAAGCCGCA-ACCAGACT-GAGGGTTGTGGCAGTGGGATCGGTA
1 ATACGGAGTTCATTCCATGTCTAAGCAGCAGA-CAGAATCGAGGGTTGTAGCAGTAGGATCGACA
** * * **
20865963 GCACGCAGAGGGGGATTGGGCCT-ATCCCTGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAGCG
65 GCACGCAG-GGGGGACCGGG-CTGATCCCCGGCTTGTGCA-TATGCCTCTCCGACCGGCTCAGCG
* * *
20866027 GCCACACGCTCATTTCATGGGTTGACGTAGGC
127 CCCACACGCTCATTTCATGGGTTGGCTTAGGC
* * *
20866059 ATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGAATCGAGGGTTGTAGTAGTAGGATCGACA
1 ATACGGAGTTCATT-CCATGTCTAAGCAGCAGACAGAATCGAGGGTTGTAGCAGTAGGATCGACA
* * * *
20866122 GCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATCTGCCTCTCCGACCGGTTGAGCGCCC
65 GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATATGCCTCTCCGACCGGCTCAGCGCCC
* *
20866187 GCACGCTCGTTTCATGGGTTGGCTTAGGC
130 ACACGCTCATTTCATGGGTTGGCTTAGGC
* *
20866216 ATACGAAGTTTATTCCATGTCTAAGCA
1 ATACGGAGTTCATTCCATGTCTAAGCA
20866243 TACGGAGTTC
Statistics
Matches: 267, Mismatches: 61, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 69 0.26
158 72 0.27
159 116 0.43
160 6 0.02
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
ATACGGAGTTCATTCCATGTCTAAGCAGCAGACAGAATCGAGGGTTGTAGCAGTAGGATCGACAG
CACGCAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATATGCCTCTCCGACCGGCTCAGCGCCCA
CACGCTCATTTCATGGGTTGGCTTAGGC
Found at i:20866243 original size:26 final size:26
Alignment explanation
Indices: 20866214--20866266 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20866204 GTTGGCTTAG
*
20866214 GCATACGAAGTTTATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
20866240 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
20866266 G
1 G
20866267 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:20866643 original size:26 final size:26
Alignment explanation
Indices: 20866591--20866643 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20866581 GTTGACTTAG
*
20866591 GCATACGGAGTTCATCCCCAATGTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
20866617 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20866643 G
1 G
20866644 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20866945 original size:159 final size:158
Alignment explanation
Indices: 20866617--20867119 Score: 485
Period size: 159 Copynumber: 3.2 Consensus size: 158
20866607 CCCAATGTAA
** * ** * * *
20866617 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGATCAAGGGTTGTGACAGCAAGATCGCC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCCAGCCAACCAAGGGTTGTGGCAGCAAGATCGAC
* * * * * *
20866681 AGCACGTAGGGGGGACCGAGCCAATCCCCAGCTTACGCATTCTGACTT-TCCGACCGACTGAGTG
65 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTG-CTTCTCCGACCGACTGAGCG
** *
20866745 CCCACACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
20866775 GCACAGGGAGTTCATTCCATGTCTAAGA-CCCAGCCAGACCGAGGGTTGTGGCAGCGAGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCCCAGCCA-ACCAAGGGTTGTGGCAGCAAGATCGAC
* * * * * *
20866839 AGCACGCAGAGGGGGATCGAGTCGATCCCCGGCTTGCGCATTATGCTTCTCCGATCGGCTCAACG
65 AGCACGCAG-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCTTCTCCGACCGACTGAGCG
* * *
20866904 CCCGTACGCTCGTTTCATGGGTTGACTTAT
129 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * * *
20866934 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGAACTAAGGATTGTGGCAACAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCCAGCCAACCAAGGGTTGTGGCAGCAAGATCGAC
* * * * * *
20866998 AACACACAGGGGGGGATCGGGCCGATCCCTGGCTTGCGCGTTCTGCCTCT-CGAACCGACTGAGC
65 AGCACGCA-GGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCTTCTCCG-ACCGACTGAGC
* *
20867062 GCCCGTACGCTTGTTTTGTGGGTTGGCTTAG
128 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
20867093 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20867120 CAAACGGAGT
Statistics
Matches: 276, Mismatches: 60, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 6 0.02
158 60 0.22
159 202 0.73
160 8 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCCCAGCCAACCAAGGGTTGTGGCAGCAAGATCGACA
GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCTTCTCCGACCGACTGAGCGCC
CGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:20867862 original size:26 final size:26
Alignment explanation
Indices: 20867825--20867877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20867815 GTTGACCTAG
*
20867825 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
20867851 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
20867877 G
1 G
20867878 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:20868155 original size:159 final size:158
Alignment explanation
Indices: 20867888--20868353 Score: 393
Period size: 159 Copynumber: 2.9 Consensus size: 158
20867878 ATCGGATCAG
* * * * * * * * *
20867888 ACCGAGGGTTGCGGCAGCAAGATCAACAGCACGCAGGGGGGACC-AGACCGATCCCCGGCTTG-T
1 ACCGAGGGTTGTGGCAACAGGACCGACAGCACACAAGGGGGACCGAG-CCGATCCCCAGC-TGAC
* * * * * * * * *
20867951 GCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATAGG
64 ACATTATGCCTCTTCGGCCAGCTCAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
20868016 GAGTTCATTCCATGTCTAAGCCCCAACCGA
129 GAGTTCATTCCATGTCTAAGCCCCAACCGA
* * * *
20868046 ACCGAGGGTTGTGGCAACGGGACCGACAGCACACTAAGGGGGATCGGGCCGATCCCC-GACTGGC
1 ACCGAGGGTTGTGGCAACAGGACCGACAGCACAC-AAGGGGGACCGAGCCGATCCCCAG-CTGAC
* * * * * * *** *
20868110 GCATTATGCCTCTTCGGTCGGCTCAG-TGCCTGCATGCTCGTTTCGTGGGTTGACTTTTACATAT
64 ACATTATGCCTCTTCGGCCAGCTCAGCT-CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* ** ** *
20868174 GGAGTTCATT-CGTAGTCTAAGATCGGACCGC
128 GGAGTTCATTCCAT-GTCTAAGCCCCAACCGA
** * * * *
20868205 ACCGAGGGTTGTGGCTGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTACAC
1 ACCGAGGGTTGTGGCAACAGGACCGACAGCACACAAGGGGGACCGAGCCGATCCCCAGCTGACAC
* * * * **
20868270 ATTCTGCCTCTTCGGCCAGTTGAGCTCCCGCACGCTCATTTAATGGGTTGGCTTAGGCATACGGA
66 ATTATGCCTCTTCGGCCAGCTCAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
20868335 GTTCATTCCATGTCTAAGC
131 GTTCATTCCATGTCTAAGC
20868354 ATATAGAGTT
Statistics
Matches: 240, Mismatches: 59, Indels: 18
0.76 0.19 0.06
Matches are distributed among these distances:
158 117 0.49
159 122 0.51
160 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
ACCGAGGGTTGTGGCAACAGGACCGACAGCACACAAGGGGGACCGAGCCGATCCCCAGCTGACAC
ATTATGCCTCTTCGGCCAGCTCAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAACCGA
Found at i:20868339 original size:158 final size:155
Alignment explanation
Indices: 20867859--20868352 Score: 488
Period size: 158 Copynumber: 3.1 Consensus size: 155
20867849 AAGCATATGA
* * * *
20867859 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAAGATCAACAGCACGCAG
1 AGTTCATT-CCAGTCTAAGATCGGA-CCGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
* * * * *
20867924 GGGGGACC-AGACCGATCCCCGGCTTGTGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGT
64 GGGGGACCGAG-CCGATCCCC-GCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCTCCCGCACGC
*
20867988 TCGTTTCGTGGGTTGGCTTAGGCATAGGG
127 TCGTTTCGTGGGTTGGCTTAGGCATACGG
** ** * * * *
20868017 AGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAACGGGACCGACAGCACACTA
1 AGTTCATTCCA-GTCTAAGATCGGACCG-ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC-A
* * * * * * * * *
20868082 AGGGGGATCGGGCCGATCCCCGACTGGCGCATTATGCCTCTTCGGTCGGCTCAG-TGCCTGCATG
63 GGGGGGACCGAGCCGATCCCCG-CTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCT-CCCGCACG
* *** *
20868146 CTCGTTTCGTGGGTTGACTTTTACATATGG
126 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
* *
20868176 AGTTCATTCGTAGTCTAAGATCGGACCGCACCGAGGGTTGTGGCTGCAGGATCGACAGCACGCAG
1 AGTTCATTC-CAGTCTAAGATCGGACCG-ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
* * * *
20868241 GGGGGACCGAGCCGATCCCCAGCTTACACATTCTGCCTCTTCGGCCAGTTGAGCTCCCGCACGCT
64 GGGGGACCGAGCCGATCCCC-GCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCTCCCGCACGCT
* **
20868306 CATTTAATGGGTTGGCTTAGGCATACGG
128 CGTTTCGTGGGTTGGCTTAGGCATACGG
20868334 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCA-GTCTAAG
20868353 CATATAGAGT
Statistics
Matches: 262, Mismatches: 64, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 131 0.50
159 123 0.47
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (155 bp):
AGTTCATTCCAGTCTAAGATCGGACCGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGG
GGGACCGAGCCGATCCCCGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCTCCCGCACGCTCGT
TTCGTGGGTTGGCTTAGGCATACGG
Found at i:20868731 original size:26 final size:26
Alignment explanation
Indices: 20868695--20868747 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20868685 GTTGACTTAG
20868695 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
20868721 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20868747 G
1 G
20868748 ATCGAGCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20869029 original size:159 final size:156
Alignment explanation
Indices: 20868815--20869222 Score: 419
Period size: 156 Copynumber: 2.6 Consensus size: 156
20868805 CTGATCTCCG
* * * *
20868815 GCTTGCGCATTCTACCACTCCGGTCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTACCTCTTCGGTCGACTGAGCG-CCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * * * *
20868880 CATAGGGAGTTCATACCATGTCTAAGCCCCAG-CCAGACTGATGGTTGTGACAGCCGGATCGGCA
65 CATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAAGGTTG-GACAGCAGGATC-ACA
*
20868944 GCACACAAAGGGGGA-CTGGGCCGGTCCCCA
128 GCACA-AAAGGGGGATC-GGGCCGATCCCCA
* * * * * * *
20868974 GCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGACCACACGCTCGTTTCATGGGTTGACTTATG
1 GCTTGCGCATTCTACCTCTTCGGTCGACTGAGCG-CCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * *
20869039 CATACGGAATTTATTCGCA-GTCTAAG-ATCAGACCGGACCGAAGGTTGGGCAGCAGGATCACAG
65 CATACGGAGTTCATTC-CATGTCTAAGCACCAGACCAGACCGAAGGTTGGACAGCAGGATCACAG
* * * *
20869102 CACATAGGGGGGATCGGGCTGATCCCTA
129 CACAAAAGGGGGATCGGGCCGATCCCCA
* ** * *
20869130 GCTTGGGCATTCTACCTCTTCGACCGACTGAGTGCCTGCACGCTTGTTTCATGGGTTGGCTTAGG
1 GCTTGCGCATTCTACCTCTTCGGTCGACTGAGCGCC-GCACGCTCGTTTCATGGGTTGGCTTAGG
20869195 CATACGGAGTTCATTCCATGTCTAAGCA
65 CATACGGAGTTCATTCCATGTCTAAGCA
20869223 TACGGAGTTC
Statistics
Matches: 200, Mismatches: 43, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
155 4 0.02
156 88 0.44
157 9 0.05
158 13 0.06
159 84 0.42
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (156 bp):
GCTTGCGCATTCTACCTCTTCGGTCGACTGAGCGCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAAGGTTGGACAGCAGGATCACAGCA
CAAAAGGGGGATCGGGCCGATCCCCA
Found at i:20869224 original size:26 final size:26
Alignment explanation
Indices: 20869194--20869246 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20869184 GTTGGCTTAG
20869194 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20869220 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20869246 G
1 G
20869247 ATTTTGAGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20869999 original size:26 final size:26
Alignment explanation
Indices: 20869969--20870021 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20869959 GTTGACTTAG
*
20869969 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
*
20869995 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
20870021 G
1 G
20870022 ATTTGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:20870189 original size:26 final size:26
Alignment explanation
Indices: 20870153--20870205 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20870143 GTTGGCTTAG
20870153 GCATACGGAGTTAATTCCAAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
* * *
20870179 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
20870205 G
1 G
20870206 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCAAGTCTAA
Found at i:20870905 original size:26 final size:26
Alignment explanation
Indices: 20870875--20870927 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20870865 GTTGACTTAG
*
20870875 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* *
20870901 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
20870927 G
1 G
20870928 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:20871253 original size:26 final size:26
Alignment explanation
Indices: 20871217--20871269 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20871207 GTTGGCTTAG
* **
20871217 GCATATGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20871243 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20871269 G
1 G
20871270 AGTTACCAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20872562 original size:26 final size:26
Alignment explanation
Indices: 20872533--20872585 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20872523 GTTGGCTTAG
* *
20872533 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
20872559 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
20872585 G
1 G
20872586 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:20872908 original size:26 final size:26
Alignment explanation
Indices: 20872878--20872928 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20872868 TGGCTTAGGG
20872878 ATATGGAGTTCATTCC-ATGTCTAAGC
1 ATATGGAGTTCATTCCTA-GTCTAAGC
20872904 ATATGGAGTTCATTCCTAGTCTAAG
1 ATATGGAGTTCATTCCTAGTCTAAG
20872929 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATGGAGTTCATTCCTAGTCTAAGC
Found at i:20873382 original size:26 final size:26
Alignment explanation
Indices: 20873346--20873398 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20873336 CGTGGGTTAG
*
20873346 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
20873372 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20873398 G
1 G
20873399 ATTAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20873519 original size:179 final size:179
Alignment explanation
Indices: 20873193--20873522 Score: 423
Period size: 179 Copynumber: 1.8 Consensus size: 179
20873183 GTTGACTTAG
* * * *
20873193 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTAGGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATTAGACCGAATCGAGGGTTAGGACAGCAGGATCGACA
* * * * * * * *
20873258 GGACACAAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGTTGAATGC
66 GCACACAAGGGGGAACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGGTTGAACGC
* *
20873323 CCGTACACTCGTTCGTGGGTTAGGCATACGGAGTTCATCCCCAGTCTAA
131 CCGCACACCCGTTCGTGGGTTAGGCATACGGAGTTCATCCCCAGTCTAA
* *
20873372 GCATACGGAGTTCATTCCCAATCTAAGATTAGATCGAATCGAGGGTT-GCGACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAATCTAAGATTAGACCGAATCGAGGGTTAG-GACAGCAGGATCGAC
* * *
20873436 AGCACGC-AGGGGGAACCGGGCCGATCCCCGGCTTACGCATTTTACCTCTCC-AGTCGGTTGAGC
65 AGCACACAAGGGGGAACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGA-TCGGTTGAAC
* *
20873499 GCCTGCACGCCCGTTTCGTGGGTT
129 GCCCGCACACCCG-TTCGTGGGTT
20873523 GGCTTAGGCA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
177 1 0.01
178 55 0.43
179 71 0.56
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (179 bp):
GCATACGGAGTTCATTCCCAATCTAAGATTAGACCGAATCGAGGGTTAGGACAGCAGGATCGACA
GCACACAAGGGGGAACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGGTTGAACGC
CCGCACACCCGTTCGTGGGTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:20873739 original size:26 final size:26
Alignment explanation
Indices: 20873689--20873740 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20873679 GTTGGCTTAG
*
20873689 GCATACAGAGTTCATTCCATCTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
20873715 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
20873741 AAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:20874433 original size:7 final size:6
Alignment explanation
Indices: 20874412--20874467 Score: 69
Period size: 6 Copynumber: 9.2 Consensus size: 6
20874402 TTTCTCTTCA
*
20874412 TTTTAT TTTTAT TTTGTAT TTTACAT TTTTAT TTTTA- TTTTAT TTTTAT
1 TTTTAT TTTTAT TTT-TAT TTT-TAT TTTTAT TTTTAT TTTTAT TTTTAT
*
20874461 TATTAT T
1 TTTTAT T
20874468 ATTTTATATA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
5 5 0.11
6 28 0.64
7 11 0.25
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTTAT
Done.