Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 108 of 125
Found at i:20874441 original size:20 final size:17
Alignment explanation
Indices: 20874411--20874467 Score: 78
Period size: 17 Copynumber: 3.2 Consensus size: 17
20874401 TTTTCTCTTC
20874411 ATTTTATTTTTATTTTGT
1 ATTTTATTTTTATTTT-T
20874429 ATTTTACATTTTTATTTTT
1 ATTTT--ATTTTTATTTTT
*
20874448 ATTTTATTTTTATTATT
1 ATTTTATTTTTATTTTT
20874465 ATT
1 ATT
20874468 ATTTTATATA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
17 14 0.39
18 5 0.14
19 6 0.17
20 11 0.31
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (17 bp):
ATTTTATTTTTATTTTT
Found at i:20874641 original size:22 final size:21
Alignment explanation
Indices: 20874598--20874710 Score: 61
Period size: 21 Copynumber: 5.1 Consensus size: 21
20874588 CTTTTTTTTC
*
20874598 CTGTTAATATTTATGTAA-TTAT
1 CTGTTAAT-TTT-TTTAATTTAT
20874620 CTGTT-ATTTAATTTTAATTTAT
1 CTGTTAATTT--TTTTAATTTAT
* *
20874642 TTGTTAATTTTTTTTATTTAT
1 CTGTTAATTTTTTTAATTTAT
* * *
20874663 CTGATTTATTTTCGTTTGATTTTTT
1 CTG-TTAATTTT--TTT-AATTTAT
* *
20874688 CT-TTTATTTTTTTGATTTAT
1 CTGTTAATTTTTTTAATTTAT
20874708 CTG
1 CTG
20874711 GCTGAAAATT
Statistics
Matches: 71, Mismatches: 11, Indels: 19
0.70 0.11 0.19
Matches are distributed among these distances:
20 8 0.11
21 21 0.30
22 21 0.30
23 12 0.17
24 3 0.04
25 6 0.08
ACGTcount: A:0.20, C:0.05, G:0.08, T:0.66
Consensus pattern (21 bp):
CTGTTAATTTTTTTAATTTAT
Found at i:20875523 original size:21 final size:19
Alignment explanation
Indices: 20875497--20875551 Score: 78
Period size: 17 Copynumber: 2.9 Consensus size: 19
20875487 GGTTTTTTTA
20875497 TTTTATTTTATTTATTAGTGG
1 TTTTA-TTTATTTATTAGT-G
20875518 TTTTATTTATTTATT--TG
1 TTTTATTTATTTATTAGTG
20875535 TTTTATTTATTTATTAG
1 TTTTATTTATTTATTAG
20875552 ATTAGGTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
17 16 0.50
18 1 0.03
20 10 0.31
21 5 0.16
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.71
Consensus pattern (19 bp):
TTTTATTTATTTATTAGTG
Found at i:20875669 original size:42 final size:39
Alignment explanation
Indices: 20875580--20875670 Score: 94
Period size: 41 Copynumber: 2.2 Consensus size: 39
20875570 TCTTTTTACC
*
20875580 TTTATTTTATTTTTTATTTTTGTTTTACTTTTCTTTATTT
1 TTTA-TTTATTTTTTATTTTTCTTTTACTTTTCTTTATTT
*
20875620 TAGTTATTTATTTTTTATTTTTACTTTTA-TTTTGGTTTTATTAT
1 T--TTATTTATTTTTTATTTTT-CTTTTACTTTT--CTTTATT-T
20875664 TTTATTT
1 TTTATTT
20875671 TCTTTAAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
40 1 0.02
41 20 0.47
42 14 0.33
43 6 0.14
44 2 0.05
ACGTcount: A:0.15, C:0.03, G:0.04, T:0.77
Consensus pattern (39 bp):
TTTATTTATTTTTTATTTTTCTTTTACTTTTCTTTATTT
Found at i:20875756 original size:59 final size:58
Alignment explanation
Indices: 20875676--20875844 Score: 270
Period size: 59 Copynumber: 2.9 Consensus size: 58
20875666 TATTTTCTTT
* *
20875676 AAATAAAATTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAATTTCCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
20875735 AAATAAATTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAA
1 AAATAAATTTCCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAA
20875794 AAATAAATTTCC--AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTT
1 AAATAAATTTCCAAAAAAAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTT
20875845 TCTTGCACAA
Statistics
Matches: 105, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
56 3 0.03
57 35 0.33
59 67 0.64
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (58 bp):
AAATAAATTTCCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:20884242 original size:8 final size:8
Alignment explanation
Indices: 20884229--20884320 Score: 70
Period size: 8 Copynumber: 11.6 Consensus size: 8
20884219 ACTATGCATA
20884229 AAAAAATG
1 AAAAAATG
20884237 AAAAAAT-
1 AAAAAATG
20884244 AAAAAA--
1 AAAAAATG
20884250 AATAAAA--
1 AA-AAAATG
*
20884257 AAAATGATG
1 AAAA-AATG
20884266 AAAAAAATG
1 -AAAAAATG
20884275 AAAAAATG
1 AAAAAATG
*
20884283 AAAAAAATAA
1 -AAAAAAT-G
20884293 AAAAAATG
1 AAAAAATG
20884301 AAAAAA-G
1 AAAAAATG
*
20884308 AAAAAGTG
1 AAAAAATG
20884316 AAAAA
1 AAAAA
20884321 GGAGGACTCA
Statistics
Matches: 71, Mismatches: 5, Indels: 16
0.77 0.05 0.17
Matches are distributed among these distances:
6 4 0.06
7 19 0.27
8 27 0.38
9 17 0.24
10 4 0.06
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.11
Consensus pattern (8 bp):
AAAAAATG
Found at i:20884270 original size:38 final size:38
Alignment explanation
Indices: 20884228--20884301 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
20884218 TACTATGCAT
20884228 AAAAAAATGAAAAAATAAAAAAAATAAAAAAAATGATG
1 AAAAAAATGAAAAAATAAAAAAAATAAAAAAAATGATG
*
20884266 AAAAAAATGAAAAAATGAAAAAAATAAAAAAAATGA
1 AAAAAAATGAAAAAATAAAAAAAATAAAAAAAATGA
20884302 AAAAAGAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (38 bp):
AAAAAAATGAAAAAATAAAAAAAATAAAAAAAATGATG
Found at i:20884320 original size:9 final size:9
Alignment explanation
Indices: 20884228--20884306 Score: 90
Period size: 9 Copynumber: 8.7 Consensus size: 9
20884218 TACTATGCAT
20884228 AAAAAAATG
1 AAAAAAATG
*
20884237 -AAAAAATA
1 AAAAAAATG
*
20884245 AAAAAAATAA
1 AAAAAAAT-G
20884255 AAAAAATGATG
1 AAAAAA--ATG
20884266 AAAAAAATG
1 AAAAAAATG
20884275 -AAAAAATG
1 AAAAAAATG
*
20884283 AAAAAAATA
1 AAAAAAATG
20884292 AAAAAAATG
1 AAAAAAATG
20884301 AAAAAA
1 AAAAAA
20884307 GAAAAAGTGA
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
8 15 0.25
9 31 0.51
10 7 0.11
11 6 0.10
12 2 0.03
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.11
Consensus pattern (9 bp):
AAAAAAATG
Found at i:20885360 original size:41 final size:41
Alignment explanation
Indices: 20885315--20885529 Score: 268
Period size: 42 Copynumber: 5.1 Consensus size: 41
20885305 ATGATTGTCA
20885315 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
20885356 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCTTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
20885397 AGGAGCAATTTACTTTCCCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTT-CCAAAGTCGTGGTGCCTCTGTTTAG
* * * * * *
20885439 AGGAGCAATTTATTTTTCCAAAATCGTTGAGCCTCTGATCAG
1 AGGAGCAATTTA-CTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * * * *
20885481 AGGAGCCATTTATGTTTCTCAAAGTCGTTGAGCCTCTATTTAG
1 AGGAGCAATTTA-CTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
20885524 AGGAGC
1 AGGAGC
20885530 TTTGATCAAA
Statistics
Matches: 153, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
41 55 0.36
42 69 0.45
43 29 0.19
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:20885431 original size:83 final size:84
Alignment explanation
Indices: 20885315--20885529 Score: 290
Period size: 83 Copynumber: 2.6 Consensus size: 84
20885305 ATGATTGTCA
* *
20885315 AGGAGCAATTTACTTT-CCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAG
1 AGGAGCAATTTACTTTCCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAA
* * * *
20885378 TCGTGGTGCTTCTGTTTAG
66 TCGTGGAGCCTCTGATCAG
*
20885397 AGGAGCAATTTACTTTCCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTATTTTTCCAAAA
1 AGGAGCAATTTACTTTCCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAA
*
20885462 TCGTTGAGCCTCTGATCAG
66 TCGTGGAGCCTCTGATCAG
* * * * *
20885481 AGGAGCCATTTATGTTTCTCAAAGTCGTTGAGCCTCTATTTAGAGGAGC
1 AGGAGCAATTTA-CTTTCCCAAAGTCGTGGTGCCTCTATTTAGAGGAGC
20885530 TTTGATCAAA
Statistics
Matches: 117, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
82 16 0.14
83 40 0.34
84 29 0.25
85 32 0.27
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (84 bp):
AGGAGCAATTTACTTTCCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAA
TCGTGGAGCCTCTGATCAG
Found at i:20885560 original size:15 final size:16
Alignment explanation
Indices: 20885540--20885569 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
20885530 TTTGATCAAA
20885540 AACAAAAAAA-AAAAG
1 AACAAAAAAACAAAAG
20885555 AACAAAAAAACAAAA
1 AACAAAAAAACAAAA
20885570 AAAAAGTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00
Consensus pattern (16 bp):
AACAAAAAAACAAAAG
Found at i:20885562 original size:21 final size:21
Alignment explanation
Indices: 20885536--20885575 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
20885526 GAGCTTTGAT
20885536 CAAAAACAA-AAAAAAAAAGAA
1 CAAAAA-AACAAAAAAAAAGAA
20885557 CAAAAAAACAAAAAAAAAG
1 CAAAAAAACAAAAAAAAAG
20885576 TAAGAAGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.85, C:0.10, G:0.05, T:0.00
Consensus pattern (21 bp):
CAAAAAAACAAAAAAAAAGAA
Found at i:20885572 original size:8 final size:8
Alignment explanation
Indices: 20885537--20885572 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
20885527 AGCTTTGATC
20885537 AAAAACAA
1 AAAAACAA
20885545 AAAAA-AA
1 AAAAACAA
*
20885552 AAGAACAA
1 AAAAACAA
20885560 AAAAACAA
1 AAAAACAA
20885568 AAAAA
1 AAAAA
20885573 AAGTAAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.89, C:0.08, G:0.03, T:0.00
Consensus pattern (8 bp):
AAAAACAA
Found at i:20885774 original size:7 final size:6
Alignment explanation
Indices: 20885753--20885809 Score: 62
Period size: 6 Copynumber: 9.2 Consensus size: 6
20885743 TTTCTCTTCA
*
20885753 TTTTAT TTTTAT TTTGTAT TTTACAT TTTGTA- TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTT-TAT TTT-TAT TTT-TAT TTTTAT TTTTAT TTTTAT
*
20885803 TATTAT T
1 TTTTAT T
20885810 ATTTTATATA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
5 2 0.05
6 30 0.68
7 12 0.27
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:20885782 original size:14 final size:14
Alignment explanation
Indices: 20885763--20885789 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
20885753 TTTTATTTTT
20885763 ATTTTGTATTTTAC
1 ATTTTGTATTTTAC
20885777 ATTTTGTATTTTA
1 ATTTTGTATTTTA
20885790 TTTTTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.04, G:0.07, T:0.67
Consensus pattern (14 bp):
ATTTTGTATTTTAC
Found at i:20885988 original size:22 final size:22
Alignment explanation
Indices: 20885963--20886013 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
20885953 ATTTATGTAA
20885963 TTATCTGTT-ATTTAATTTTAAT
1 TTATCTGTTAATTT-ATTTTAAT
* *
20885985 TTATCTGTTAATTTTTTTTGAT
1 TTATCTGTTAATTTATTTTAAT
20886007 TTATCTG
1 TTATCTG
20886014 ATTTATTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.22, C:0.06, G:0.08, T:0.65
Consensus pattern (22 bp):
TTATCTGTTAATTTATTTTAAT
Found at i:20886390 original size:19 final size:19
Alignment explanation
Indices: 20886363--20886400 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
20886353 CCAGATTCCG
20886363 GTTGAATTTTTCGACGAAA
1 GTTGAATTTTTCGACGAAA
* *
20886382 GTTGCATTTTTTGACGAAA
1 GTTGAATTTTTCGACGAAA
20886401 ATTCCAGCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (19 bp):
GTTGAATTTTTCGACGAAA
Found at i:20886919 original size:8 final size:8
Alignment explanation
Indices: 20886908--20886967 Score: 59
Period size: 8 Copynumber: 7.4 Consensus size: 8
20886898 TTTACCTTTA
20886908 TTTTTATT
1 TTTTTATT
20886916 TTTTTATT
1 TTTTTATT
20886924 TTTTT-TT
1 TTTTTATT
* *
20886931 ACTTTTCTT
1 -TTTTTATT
20886940 TATTTTATT
1 T-TTTTATT
*
20886949 TATTTATT
1 TTTTTATT
*
20886957 TATTTATT
1 TTTTTATT
20886965 TTT
1 TTT
20886968 ACTTTTATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
7 2 0.05
8 33 0.75
9 9 0.20
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTATT
Found at i:20886952 original size:4 final size:4
Alignment explanation
Indices: 20886910--20886965 Score: 53
Period size: 4 Copynumber: 13.8 Consensus size: 4
20886900 TACCTTTATT
* *
20886910 TTTA TTTT TTTA TTT- TTT- TTTA CTTTTC TTTA TTTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA --TTTA TTTA -TTTA TTTA TTTA TTTA
20886959 TTTA TTT
1 TTTA TTT
20886966 TTACTTTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
3 6 0.14
4 31 0.70
5 4 0.09
6 3 0.07
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (4 bp):
TTTA
Found at i:20887088 original size:59 final size:59
Alignment explanation
Indices: 20887016--20887235 Score: 306
Period size: 59 Copynumber: 3.7 Consensus size: 59
20887006 AAAATTCAAA
*
20887016 AAAAAAAATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCT
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCT
*
20887075 AAAAAATATTTTTGG-GAAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT-AAAATTTC-
1 AAAAAATATTTTTGGAG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCT
** *
20887131 AAAAAAGGGTTTTT-GAGGAAAAGTTGAAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTT
1 AAAAAA-TATTTTTGGA-GAAAAGTTG-AAAGTATCAATTTTCCTTGAAAATCAAAGTTTCT
* *
20887192 GAAAAATAATTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTG
20887236 CATAAGAACA
Statistics
Matches: 142, Mismatches: 10, Indels: 18
0.84 0.06 0.11
Matches are distributed among these distances:
56 7 0.05
57 20 0.14
58 25 0.18
59 64 0.45
60 19 0.13
61 7 0.05
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (59 bp):
AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCT
Found at i:20887176 original size:117 final size:116
Alignment explanation
Indices: 20887024--20887234 Score: 354
Period size: 117 Copynumber: 1.8 Consensus size: 116
20887014 AAAAAAAAAA
*
20887024 TTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCTAAAAAATATTTTTG
1 TTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCTAAAAAATAATTTTG
20887089 G-GAAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAATTTCAAAAAAGGG
66 GAG-AAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAATTTCAAAAAAGGG
* *
20887140 TTTTT-GAGGAAAAGTTGAAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTTGAAAAATAATTT
1 TTTTTGGA-GAAAAGTTG-AAAGTATCAATTTTCCTTGAAAATCAAAGTTTCTAAAAAATAATTT
20887204 TGGAGAAAAGTTGAAAGTATCAATTTTCCTT
64 TGGAGAAAAGTTGAAAGTATCAATTTTCCTT
20887235 GCATAAGAAC
Statistics
Matches: 89, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
115 2 0.02
116 14 0.16
117 72 0.81
118 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (116 bp):
TTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCTAAAAAATAATTTTG
GAGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAATTTCAAAAAAGGG
Found at i:20888688 original size:26 final size:26
Alignment explanation
Indices: 20888652--20888704 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20888642 CCAGTCTGAT
20888652 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
20888678 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20888704 C
1 C
20888705 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20889376 original size:26 final size:26
Alignment explanation
Indices: 20889347--20889399 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20889337 CCGGTCCGAT
*
20889347 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20889373 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
20889399 C
1 C
20889400 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:20891357 original size:26 final size:26
Alignment explanation
Indices: 20891319--20891371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20891309 TCGGTCTGAT
*
20891319 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20891345 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
20891371 C
1 C
20891372 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20891771 original size:159 final size:159
Alignment explanation
Indices: 20891344--20891783 Score: 419
Period size: 159 Copynumber: 2.8 Consensus size: 159
20891334 AACTCCGTAT
* *
20891344 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
20891409 CCAATTGGAGAGGTAGAATGCGCAAGCCGGGGA-CCGACCCAGTCCCCCT-TACTTGCAATCAAT
66 CCAGTCGGAGAGGTCGAATGCGCAAGCCGAGGATCAG-CCCAGTCCCCCTCTACGTGCTATCAAT
* **
20891472 CCTGCTGTCACAACCCTTGGTCCGATCCGA
130 CCCGCTGTCACAACCCTCAGTCCGATCCGA
* * * * * * * *
20891502 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTCCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
20891566 GCC-GATCGGAGAGG-CATAACGTGCAAGCTGAGAATCGGCCCAGTCCCCCTCTTCGTGCTGTCG
65 GCCAG-TCGGAGAGGTC-GAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCTCTACGTGCTATCA
* *
20891629 ATCCCGCTG-CAACAACCCTCAGTCCGA-CTGGG
128 ATCCCGCTGTC-ACAACCCTCAGTCCGATC-CGA
* * * * *
20891661 GCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAATCCACGAAACGGGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
20891726 CCAGTCGGAGAGGTCGAATGCGTAAGCCGAGGATCAGCCCGGTCCCCC-CTGCGTGCTA
66 CCAGTCGGAGAGGTCGAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCTCTACGTGCTA
20891784 CCGATTTTGC
Statistics
Matches: 220, Mismatches: 52, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 97 0.44
159 119 0.54
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTCGGAGAGGTCGAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCTCTACGTGCTATCAATC
CCGCTGTCACAACCCTCAGTCCGATCCGA
Found at i:20891870 original size:26 final size:26
Alignment explanation
Indices: 20891819--20891871 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20891809 CCAGTCTGAT
* *
20891819 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20891845 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
20891871 C
1 C
20891872 CTACGCTAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20892198 original size:26 final size:26
Alignment explanation
Indices: 20892162--20892240 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20892152 CTGATCCAAT
*
20892162 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20892188 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20892214 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
20892240 C
1 C
20892241 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:20892705 original size:552 final size:551
Alignment explanation
Indices: 20891676--20892705 Score: 1129
Period size: 552 Copynumber: 1.9 Consensus size: 551
20891666 GACATGGAAA
* * * * * *
20891676 GAACTCCCTATGCCTAAGCCAATCCACGAAACGGGCGTGCGGGCGTTCAGCCAGTCGGAGAGGTC
1 GAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGGTCAGCCAGCCGGAGAGGTA
* * * * * ***
20891741 GAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATTTTGCTACCGTAACCTC
66 GAATGCGCAAGCCGAGGATCAGACCAGTCCCCCCTACATGCTACCGACCCTGCTACCGTAACCTC
* *
20891806 GGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGAGGATGAACTCCATATG
131 GGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGA-GATGAACACCATATG
* * * * * * **
20891871 CCTACGCTAGCCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGTAGAATGCGTAACC
195 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAACC
* * ** *
20891936 CGGGGATCAGCCCGATCTCTTTCTACGTGCTACTGGTCCCGCTACCACAACCCTCGATCCAGCTG
260 CAGGGACCAGCCCGATCTCTCCCTACGTGCTACTGATCCCGCTACCACAACCCTCGATCCAGCTG
* * * * * *
20892001 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGTGTGCGGGCGCTC
325 GAGCTTAGACATGGAATAAACTCCCTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCACTC
* * * * * * * *
20892066 AGCCTGTCAGAGAGGCAGAATGCGTAAGTCGGGGATCGACTCGATCCCCCCTGCGTACTGCCGAT
390 AACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTACTGCAGAT
* * * *
20892131 CCTACTATCGCAACCTTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
455 CCCACTACCACAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
20892196 GGGGATGAACTCCGTATGCTTAGACTGGGGAT
520 GGGGATGAACTCCGTATGCTTAGACTGGGGAT
* * * ** *
20892228 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGGTCAGCTGGCCGGTGAGGTA
1 GAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGGTCAGCCAGCCGGAGAGGTA
* * * *
20892293 GAATGCGCAAGTCGGGGATC-GACCAGTCCCCCCTACATGCTATCGACCCTGCTGCCGTAACCCT
66 GAATGCGCAAGCCGAGGATCAGACCAGTCCCCCCTACATGCTACCGACCCTGCTACCGTAA-CCT
* * * *
20892357 CTGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATTCTTAGACATTGA-ATGAACACCGTA
130 CGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC--TGAGATGAACACCATA
* * *
20892421 TGCCTAAGCCAACCCACGAAGCGAGTGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACAA
193 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAA
* * * * * * * ** * *
20892486 GCCAGGGACCAGTCTGGTCTC-CCCTACGTGCTA-TCGATCCTGTTGCTGCAACCCTCGGTCCGG
258 CCCAGGGACCAGCCCGATCTCTCCCTACGTGCTACT-GATCCCGCTACCACAACCCTCGATCCAG
* ** **
20892549 TCT-GATCTTAGAC-TGGGAATAAACTCTGTATGCCTAAGTCAACACACGAAACGAGCGTTTGGG
322 -CTGGAGCTTAGACAT-GGAATAAACTCCCTATGCCTAAGTCAACACACGAAACGAGCGTGCGGG
* * * * * * *
20892612 CACTGAACCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCATCTACGTGCT
385 CACTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCC-CCTACGTACT
* *
20892677 GTCAG-TCCCGCTGCCACAACCCTCGATCT
449 G-CAGATCCCACTACCACAACCCTCGATCT
20892706 AGCTGGGGCT
Statistics
Matches: 381, Mismatches: 89, Indels: 16
0.78 0.18 0.03
Matches are distributed among these distances:
550 2 0.01
551 151 0.40
552 223 0.59
553 2 0.01
554 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (551 bp):
GAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGGTCAGCCAGCCGGAGAGGTA
GAATGCGCAAGCCGAGGATCAGACCAGTCCCCCCTACATGCTACCGACCCTGCTACCGTAACCTC
GGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGAGATGAACACCATATGC
CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAACCC
AGGGACCAGCCCGATCTCTCCCTACGTGCTACTGATCCCGCTACCACAACCCTCGATCCAGCTGG
AGCTTAGACATGGAATAAACTCCCTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCACTCA
ACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTACTGCAGATC
CCACTACCACAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGGATGAACTCCGTATGCTTAGACTGGGGAT
Found at i:20892783 original size:159 final size:156
Alignment explanation
Indices: 20892397--20892834 Score: 387
Period size: 159 Copynumber: 2.8 Consensus size: 156
20892387 ACTTCGTATT
* * * * *
20892397 CTTAGACATTGAATGAACACCGTATGCCTAAGCCAACCCACGAAGCGAGTGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * * * * *
20892462 CGACCGGAGAGGCAGAATGCACAAGCCAGGGACCAGTCTGGTCTCCCCTACGTGCTATCGATCCT
65 CGGCCGGAGAGGCAGAATGCACAAGCCGGGGAACGGCCCGGTC-CCCCTACGTGCTATCGATCCC
* ** * * *
20892527 GTTGCTGCAACCCTCGGTCCGGTCTGAT
129 GCTGCCACAACCCTCGATCCAGTCTGAG
* * * * ** * * *
20892555 CTTAGAC-TGGGAATAAACTCTGTATGCCTAAGTCAACACACGAAACGAGCGTTTGGGCACTGAA
1 CTTAGACAT-GGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
20892619 CCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCATCTACGTGCTGTC-AGT
64 TCGGCCGGAGAGGCAGAATGCACAAGCCGGGGAACGGCCCGGTCCCC--CTACGTGCTATCGA-T
* *
20892683 CCCGCTGCCACAACCCTCGATCTAG-CTGGGG
126 CCCGCTGCCACAACCCTCGATCCAGTCT-GAG
* *
20892714 CTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAAC-TCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * * * *
20892779 CGGCCAGAGAGGCAGACTACACAAGTCGGGGAACGACCCGGTCCCCCCTGCGTGCT
65 CGGCCGGAGAGGCAGAATGCACAAGCCGGGGAACGGCCCGGT-CCCCCTACGTGCT
20892835 GCCGATCTTG
Statistics
Matches: 218, Mismatches: 53, Indels: 18
0.75 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 94 0.43
159 113 0.52
160 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTC
GGCCGGAGAGGCAGAATGCACAAGCCGGGGAACGGCCCGGTCCCCCTACGTGCTATCGATCCCGC
TGCCACAACCCTCGATCCAGTCTGAG
Found at i:20892923 original size:26 final size:26
Alignment explanation
Indices: 20892872--20892924 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20892862 CTGATCTGAT
*
20892872 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20892898 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
20892924 C
1 C
20892925 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20893975 original size:25 final size:26
Alignment explanation
Indices: 20893927--20893976 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
20893917 CTAGTCTGAT
*
20893927 CTTAGACTGGGAATGAACTTCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
20893953 CTTAGACTGGG-ATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
20893977 GCCTGAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:20894312 original size:26 final size:26
Alignment explanation
Indices: 20894272--20894340 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
20894262 CTTCAACTAG
**
20894272 GAATGAACTTTGTATGCTTAGACATC
1 GAATGAACTCCGTATGCTTAGACATC
*
20894298 GAATGAACTCCGTATGCTTAGACATG
1 GAATGAACTCCGTATGCTTAGACATC
20894324 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
20894341 CTAAGCTAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
GAATGAACTCCGTATGCTTAGACATC
Found at i:20894683 original size:26 final size:26
Alignment explanation
Indices: 20894631--20894683 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20894621 TCGATCTGAT
*
20894631 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
*
20894657 CTTAGACTGGGGATGAACT-TCGCATG
1 CTTAGACTGGGAATGAACTCT-GCATG
20894683 C
1 C
20894684 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:20895391 original size:26 final size:26
Alignment explanation
Indices: 20895353--20895405 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20895343 GGCTCAAACT
*
20895353 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
20895379 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
20895405 C
1 C
20895406 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:20895732 original size:26 final size:26
Alignment explanation
Indices: 20895696--20895747 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20895686 CCGGTTCGAT
*
20895696 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
20895722 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20895748 TCAAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20901613 original size:26 final size:26
Alignment explanation
Indices: 20901575--20901627 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20901565 CCGGTCCGAT
*
20901575 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGATTGGGAATGAACTCTGTATG
*
20901601 CTTAGATAT-GGAATGTACTCTGTATG
1 CTTAGAT-TGGGAATGAACTCTGTATG
20901627 C
1 C
20901628 CTAAGCCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCTGTATG
Found at i:20902105 original size:26 final size:26
Alignment explanation
Indices: 20902076--20902128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20902066 CTGGTCCTAT
*
20902076 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20902102 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20902128 C
1 C
20902129 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20902845 original size:26 final size:26
Alignment explanation
Indices: 20902807--20902859 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20902797 GGCTCAAAGT
20902807 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20902833 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
20902859 C
1 C
20902860 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20904191 original size:26 final size:26
Alignment explanation
Indices: 20904149--20904198 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20904139 GACTTAGGCG
*
20904149 TACAGAGTTCATCCCCAGTCTAAGCA
1 TACAGAGTGCATCCCCAGTCTAAGCA
*
20904175 TACAGAGTGCATTCCCAGTCTAAG
1 TACAGAGTGCATCCCCAGTCTAAG
20904199 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (26 bp):
TACAGAGTGCATCCCCAGTCTAAGCA
Found at i:20904866 original size:26 final size:26
Alignment explanation
Indices: 20904822--20904873 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20904812 TTGACTTAGT
* *
20904822 CATATGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTACATCCCCAGTCTAAG
*
20904848 CATACGGAGTACATTCCCAGTCTAAG
1 CATACGGAGTACATCCCCAGTCTAAG
20904874 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTACATCCCCAGTCTAAG
Found at i:20905193 original size:26 final size:26
Alignment explanation
Indices: 20905164--20905216 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20905154 GTTGGCTTAG
* *
20905164 GCATACGGATTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20905190 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20905216 G
1 G
20905217 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20905377 original size:343 final size:343
Alignment explanation
Indices: 20904751--20905416 Score: 829
Period size: 343 Copynumber: 1.9 Consensus size: 343
20904741 ATCTGACTGA
** * *
20904751 TCCTCGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACGCTTGTCTCGTGGGTTGA
1 TCCTCGACTTACGCATTCTACCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTCTCGTGGGTTGA
* * *
20904816 CTTAGTCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTACATTCCCAGTCTAAGATCAGAC
66 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTACATTCCCAGTCTAAGATCAGAC
* * * * * *
20904881 CGGATCGAGGGTTGTGACAGTAGGATCGATAGCATACAGGGGGGATCAGGCCGATCCCAGGCTTG
131 CGGACCGAGGGTTGCGACAGCAGGATCGACAGCATACAGGGGGGATCAGGCCAATCCCAGGCTTA
* * *
20904946 CGCATTCTGCCTCTCCAACCGGTTGAGCGCCCGCACACACGTTTCATGGGTTGGCTTAGGCATAG
196 CGCATTCTGCCACTCCAACCGGCTGAGCGCCCGCACACACATTTCATGGGTTGGCTTAGGCATAG
* * **
20905011 GGAGTTCATTCGATGTCTAAGCCCCAGTTGGACCAAGGGTTGTGGCAGCAAGACCGACAGCACGT
261 GGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCGACAGCACGT
20905076 TGGGAGGGATCAGGCTGG
326 TGGGAGGGATCAGGCTGG
* * * *
20905094 TCCTCGACTTACGCATTCTACCTCTCCGTCCTG-CTGATCGCCCGTACGCTCGTTTCGTGTGTTG
1 TCCTCGACTTACGCATTCTACCTCTCCGGCC-GACTGAGCGCCCGTACGCTCGTCTCGTGGGTTG
* * * *
20905158 GCTTAGGCATACGGATTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-G
65 ACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTACATTCCCAGTCTAAGATCAG
* * * * *
20905221 AATCGGACCGAGGGTTGCGACAGCAGGATCGGCAGTATACAGGGGGGATC-GAGCTAATTCTC-G
129 -ACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATACAGGGGGGATCAG-GCCAA-TCCCAG
** ** * *** * *
20905284 GCTTACGCATTCTGCCACTCTGATTGGCTGAGCGTCCGCACGTTCATTTCGTGGGTTGGTTTAGG
191 GCTTACGCATTCTGCCACTCCAACCGGCTGAGCGCCCGCACACACATTTCATGGGTTGGCTTAGG
* ***
20905349 CATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGACAG
256 CATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCGACAG
20905414 CAC
321 CAC
20905417 ACAGAGGAGG
Statistics
Matches: 271, Mismatches: 47, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
342 5 0.02
343 262 0.97
344 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (343 bp):
TCCTCGACTTACGCATTCTACCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTCTCGTGGGTTGA
CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTACATTCCCAGTCTAAGATCAGAC
CGGACCGAGGGTTGCGACAGCAGGATCGACAGCATACAGGGGGGATCAGGCCAATCCCAGGCTTA
CGCATTCTGCCACTCCAACCGGCTGAGCGCCCGCACACACATTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCGACAGCACGT
TGGGAGGGATCAGGCTGG
Found at i:20905450 original size:343 final size:343
Alignment explanation
Indices: 20904749--20905533 Score: 794
Period size: 343 Copynumber: 2.3 Consensus size: 343
20904739 GGATCTGACT
* ** *
20904749 GATCCTCGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACGCTTGTCTCGTGGGTT
1 GATCCTAGACTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTCTCGTGGGTT
* * *
20904814 GACTTAGTCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTACATTCCCAGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTACATTCCCAGTCTAAGATCAG
* * * * *
20904879 ACCGGATCGAGGGTTGTGACAGTAGGATCGATAGCATACAGGGGGGATCAGGCCGATCCCAGGCT
131 ACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATACAGGGGGGATCAGGCCAATCCCAGGCT
* * * *
20904944 TGCGCATTCTGCCTCTCCAACCGGTTGAGCGCCCGCACACACGTTTCATGGGTTGGCTTAGGCAT
196 TACGCATTCTGCCACTCCAACCGGCTGAGCGCCCGCACACACATTTCATGGGTTGGCTTAGGCAT
* * **
20905009 AGGGAGTTCATTCGATGTCTAAGCCCCAGTTGGACCAAGGGTTGTGGCAGCAAGACCGACAGCAC
261 AGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCGACAGCAC
*** * *
20905074 GTTGGGAGGGATCAGGCT
326 ACAGGGAGGGACCAGGCC
* * * * * * *
20905092 GGTCCTCGACTTACGCATTCTACCTCTCCGTCCTG-CTGATCGCCCGTACGCTCGTTTCGTGTGT
1 GATCCTAGACTTACGCATTCTGCCTCTCCGGCC-GACTGAGCGCCCGTACGCTCGTCTCGTGGGT
* * * *
20905156 TGGCTTAGGCATACGGATTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
65 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTACATTCCCAGTCTAAGATC
* * * * *
20905220 -GAATCGGACCGAGGGTTGCGACAGCAGGATCGGCAGTATACAGGGGGGATC-GAGCTAATTCTC
129 AG-ACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATACAGGGGGGATCAG-GCCAA-TCCC
** ** * *** * *
20905283 -GGCTTACGCATTCTGCCACTCTGATTGGCTGAGCGTCCGCACGTTCATTTCGTGGGTTGGTTTA
191 AGGCTTACGCATTCTGCCACTCCAACCGGCTGAGCGCCCGCACACACATTTCATGGGTTGGCTTA
* ***
20905347 GGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGAC
256 GGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCGAC
20905412 AGCACACAGAGGA-GGACC-GAGCC
321 AGCACACAG-GGAGGGACCAG-GCC
* * ** * * ** * * * * *
20905435 GATCTTTAG-CTTACGCATTATGCCTCTCCAACCGATTCAGCATCCGAAAGCTCATTTCATGGGT
1 GATC-CTAGACTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTCTCGTGGGT
* ** *
20905499 TGACTTTGGCATACGGAGAACATTCCCAGTCTAAG
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
20905534 ATCGAACCAG
Statistics
Matches: 356, Mismatches: 76, Indels: 20
0.79 0.17 0.04
Matches are distributed among these distances:
342 7 0.02
343 337 0.95
344 12 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (343 bp):
GATCCTAGACTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTCTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTACATTCCCAGTCTAAGATCAG
ACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATACAGGGGGGATCAGGCCAATCCCAGGCT
TACGCATTCTGCCACTCCAACCGGCTGAGCGCCCGCACACACATTTCATGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCGACAGCAC
ACAGGGAGGGACCAGGCC
Found at i:20905636 original size:25 final size:26
Alignment explanation
Indices: 20905591--20905642 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
20905581 GGGGACTTAG
*
20905591 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20905617 GCATACGAAG-TCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20905642 G
1 G
20905643 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20905930 original size:26 final size:26
Alignment explanation
Indices: 20905901--20905952 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20905891 GTTGTCCTAC
*
20905901 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
*
20905927 GCATATGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
20905953 TATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:20906189 original size:311 final size:310
Alignment explanation
Indices: 20905591--20906358 Score: 751
Period size: 311 Copynumber: 2.5 Consensus size: 310
20905581 GGGGACTTAG
* *
20905591 GCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTCATTCCCAGTCTAAGATCAGATCGGACC
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * *
20905656 GAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCACATT
66 GAGGGTTGCAACAGCAGGATCAGCAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCACATT
* * * * * * ** *
20905721 CTGTCTCTTCGATCGGTTGAAGGCTCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
131 CTGCCTCTCCGACCGGCTGAAGGCCCGCACACCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTT
* * * * *
20905786 CATTCCATGTCTAAGCTACAGTCAAACCAAGGGTTATGGCAGCGGGATCGGTAGCACGCAGAGAG
196 CATTCCATGTCTAAGCCACAGCCAAACCAAGGGTTATGGCAGCAGGATCGGCAGCACACAGAGAG
*
20905851 GGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTTCGGTTGTCCTAC
261 GGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTTCGGTTGTCCTAC
* * * *
20905901 GCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGGTCATTCCCAGTCTAATATCAGACCAGA
1 GCATACGGAGTTCATCCCCA-GTCTAAGCATA-CGAAGTCATTCCCAGTCTAAGATCAGACCAGA
* * * * *
20905965 TCGAGGGTTGCAATAGTAGGATCAGTAGCACGCAGGGGGGACCGAGTCGATCCCCAGCTTGCACA
64 CCGAGGGTTGCAACAGCAGGATCAGCAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCACA
*
20906030 TTCTGCCTCTCC-AGCCGGCTG-AGCGCCCGCACACCCGTTTCGTGGGTTAGCTTAGGCATAGGG
129 TTCTGCCTCTCCGA-CCGGCTGAAG-GCCCGCACACCCGTTTCATGGGTTAGCTTAGGCATAGGG
* * * * * *
20906093 AGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTATGGTAGCAGGATCGGCAGCGCACAG
192 AGTTCATTCCATGTCTAAGCCACAGCCAAACCAAGGGTTATGGCAGCAGGATCGGCAGCACACAG
* * * * * * *
20906158 AGGGGGATCGGG-CTGA-CCCTTGATTTACGCATTATGCCTCTCCGATCGGTTC-AGC
257 AGAGGGATCGGGTC-GATCCC-CGACTTACGCATTATGCCTCTTCGGT-TGTCCTA-C
* * * * ** ** * *
20906213 GCCTGAAGGCTCGTTTCGTGGCTTGACATAGGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGA
1 GCAT-ACGG--AG-TTCATCCCCAGTC-TAAGCATACGA-AG-TCATTCCCAGTCTAAGATCAGA
* ** ** * *
20906277 TCAGACCGAGGGTTGCAGTAGCAGGATC-GACAGCACGCAGGACGGACCGAGCCAATCCCCGGCT
59 CCAGACCGAGGGTTGCAACAGCAGGATCAG-CAGCACGCAGGGGGGACCGAGCCGATCCCCAGCT
**
20906341 TGTGCATTCTGCCTCTCC
123 TGCACATTCTGCCTCTCC
20906359 AACTGGCCTC
Statistics
Matches: 371, Mismatches: 70, Indels: 27
0.79 0.15 0.06
Matches are distributed among these distances:
309 3 0.01
310 33 0.09
311 218 0.59
312 7 0.02
313 3 0.01
315 2 0.01
316 8 0.02
317 97 0.26
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (310 bp):
GCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTCATTCCCAGTCTAAGATCAGACCAGACC
GAGGGTTGCAACAGCAGGATCAGCAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCACATT
CTGCCTCTCCGACCGGCTGAAGGCCCGCACACCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTT
CATTCCATGTCTAAGCCACAGCCAAACCAAGGGTTATGGCAGCAGGATCGGCAGCACACAGAGAG
GGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTTCGGTTGTCCTAC
Found at i:20906795 original size:26 final size:26
Alignment explanation
Indices: 20906759--20906809 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20906749 TTGGCTTAGG
20906759 CATACAGAGTTCATTCC-ATGTCTAAA
1 CATACAGAGTTCATTCCTA-GTCTAAA
*
20906785 CATACGGAGTTCATTCCTAGTCTAA
1 CATACAGAGTTCATTCCTAGTCTAA
20906810 GAGTTTAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCTAGTCTAAA
Found at i:20907436 original size:159 final size:156
Alignment explanation
Indices: 20907169--20907634 Score: 470
Period size: 159 Copynumber: 3.0 Consensus size: 156
20907159 GATTAAACCA
* * * *
20907169 GACCGAGGGTTGTGGCAGTAGGATCGGCAG--CGCACAGGAGGGATCGGGCTGATCCCCGGCTTG
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-AGG-GGGATCGGGCCGATCCTC-GCTTG
* ** * * *
20907232 TGCATTCTGCCTCTCCGGTTGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
63 CGCATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAA
*
20907297 GGAGTTCATCCCATGTCTAAGCCCCAGCTG
128 GGAGTTCATCCCATGTCTAAGCCCCA-CAG
* * * *
20907327 GATCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCTTCGACTTGC
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-AGGGGGATCGGGCCGATCCTCG-CTTGC
* * * * * * *
20907392 GCATTATGCCTCTTCGGCAGGCTCAGCGCCCGAACGCTTGTTTCGTGGGTTGACTTAGGCATAAA
64 GCATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAG
** *
20907457 GAGTTCATTCCCA-GTCTAAGATCGACAG
129 GAGTTCA-TCCCATGTCTAAGCCCCACAG
** * * * * * * *
20907485 GACCGAGGGTTACGACAGCAAGATCGACAGCATGCAAGGGGGATCAGGTCGGTCCTCTGCTTACG
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCTC-GCTTGCG
* * * * * *
20907550 CATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATATGG
65 CATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGG
*
20907615 AGTTCATTCCATGTCTAAGC
130 AGTTCATCCCATGTCTAAGC
20907635 ATACGGAGTT
Statistics
Matches: 248, Mismatches: 54, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
156 4 0.02
157 87 0.35
158 58 0.23
159 88 0.35
160 11 0.04
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (156 bp):
GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCTCGCTTGCGC
ATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGA
GTTCATCCCATGTCTAAGCCCCACAG
Found at i:20907598 original size:157 final size:160
Alignment explanation
Indices: 20907255--20907633 Score: 419
Period size: 157 Copynumber: 2.4 Consensus size: 160
20907245 TCCGGTTGGT
* * *
20907255 TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA-TCCCATGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCATGTCTAAGA
* * ** * * * * *
20907319 CCCAGCTGGATCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCTT
66 CCCAGCAGGACCGAGGGTTACGACAGCAAGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCT
* * * *
20907384 CGACTTGCGCATTATGCCTCTTCGGCAGGC
131 CGACTTACGCATTATGCCTCTCCGACAGAC
* * * * *
20907414 TCAGCGCCCGAACGCTTGTTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCCA-GTCTAAGA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCATGTCTAAGA
* * * * * *
20907478 TCGA-CAGGACCGAGGGTTACGACAGCAAGATCGACAGCATGCA-AGGGGGATCAGGTCGGTCCT
66 CCCAGCAGGACCGAGGGTTACGACAGCAAGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCT
* *
20907541 CTG-CTTACGCATTCTGCCTCTCCGACCGAC
131 C-GACTTACGCATTATGCCTCTCCGACAGAC
* * *
20907571 TGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAG
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCATGTCTAAG
20907634 CATACGGAGT
Statistics
Matches: 180, Mismatches: 37, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
156 3 0.02
157 89 0.49
158 31 0.17
159 52 0.29
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCCATGTCTAAGA
CCCAGCAGGACCGAGGGTTACGACAGCAAGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCT
CGACTTACGCATTATGCCTCTCCGACAGAC
Found at i:20907637 original size:26 final size:26
Alignment explanation
Indices: 20907607--20907659 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20907597 GTTGGCTTAG
* *
20907607 GCATATGGAGTTC-ATTCCATGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
20907633 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
20907659 G
1 G
20907660 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:20907886 original size:196 final size:196
Alignment explanation
Indices: 20907506--20908014 Score: 483
Period size: 196 Copynumber: 2.7 Consensus size: 196
20907496 ACGACAGCAA
* *
20907506 GATCGACAGCATGCAAGGGGGATCAGGTCGGTCCTCTGCTTACGCATTCTGCCTCTCCGACCGAC
1 GATCGACAGCATGCAAGGGGGACCAGGTCGATCCTCTGCTTACGCATTCTGCCTCTCCGACCGAC
* ** * *
20907571 TGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
66 TGAACGCCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCATGTCTAAGCA
** * *
20907636 TACGGAGTTCAATCCCAGTCTAAGATTGGATCGGACCGAAGGTTGCAACAACAGGACCAGCGGCA
131 TACGGAGTTCAATCCCAGTCTAAGATCAGATCAGACCGAAGGTTACAACAACAGGACCAGCGGCA
20907701 G
196 G
* * * * * * *
20907702 GATCGATAGCATGTAGGGGGGACCGGGTCGATCC-CTGACTTACGCATTCTGCCTCTTCGATCGG
1 GATCGACAGCATGCAAGGGGGACCAGGTCGATCCTCTG-CTTACGCATTCTGCCTCTCCGACCGA
* * * *
20907766 TTGAATGCCTGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCC-TAGTCTAAG
65 CTGAACGCCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCAT-GTCTAAG
* * * * *
20907830 CATATGGAGTTCATTCTCAGTCTAAGATCAGA-CTAGACCGAAGGTTACAGCAACAGGATCA---
129 CATACGGAGTTCAATCCCAGTCTAAGATCAGATC-AGACCGAAGGTTACAACAACAGGACCAGCG
20907891 GCA-
193 GCAG
*** ** * *
20907894 G-T--AC-GCA-G---GGGGGACCAAACCGATCC-CTGACTTGTGCATTCTGCTTCTCCGATCGA
1 GATCGACAGCATGCAAGGGGGACCAGGTCGATCCTCTG-CTTACGCATTCTGCCTCTCCGACCGA
** * * * ** * *
20907950 CTGAGTGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 CTGAACGCCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
20908015 CCCAGCTGGA
Statistics
Matches: 261, Mismatches: 48, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
184 91 0.35
185 1 0.00
187 1 0.00
188 3 0.01
189 1 0.00
191 1 0.00
192 1 0.00
193 3 0.01
195 5 0.02
196 154 0.59
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.25
Consensus pattern (196 bp):
GATCGACAGCATGCAAGGGGGACCAGGTCGATCCTCTGCTTACGCATTCTGCCTCTCCGACCGAC
TGAACGCCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCATGTCTAAGCA
TACGGAGTTCAATCCCAGTCTAAGATCAGATCAGACCGAAGGTTACAACAACAGGACCAGCGGCA
G
Found at i:20908146 original size:159 final size:158
Alignment explanation
Indices: 20907883--20908648 Score: 592
Period size: 159 Copynumber: 4.8 Consensus size: 158
20907873 GTTACAGCAA
* * * * * * * * *
20907883 CAGGATC-AGCAGTACGCAGGGGGGACCAAACCGATCCCTGACTTGTGCATTCTGCTTCTCCGAT
1 CAGGATCGA-CAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
* * * * *
20907947 CGACTGAGTGCCC-ACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
65 CGGCTCAGCGCCCGA-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
**
20908011 AAGCCCCAGCTGGACCGAGGGTTGTGGCAG
129 AAGCCCCAGCCAGACCGAGGGTTGTGGCAG
* * * * * * *
20908041 CGGGATCGACAGCACACAGAAGGGGACTGGGCCGATCCCCGGCTTGCGTATTATGCCTCTTCGAC
1 CAGGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
* * * * * *
20908106 CGGCTCAACGCCTGAACGTTCGTTTCATGGGTTGACTTAGGCATACAGAGTTTATTCCCA-GTCT
65 CGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
** * * * **
20908170 AAGATCGAACCAGATCGAGGGTTGTGATAG
129 AAGCCCCAGCCAGACCGAGGGTTGTGGCAG
* * * * ** * *
20908200 CAGGATCGATAGCACGTAGGGGGGACCGGGCCGATTCCCGGCTTGCATATTCTGCCTCTCCGATC
1 CAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC
* * * * * *
20908265 GACTGAGCAG-CCGCACGCCCGTTTCATGGGTTGGCTTCGGCATAGGGAGTTCATTCCATGTCTA
66 GGCTCAGC-GCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
20908329 AGCCCCAGCCAGACCGAGGGTTATGGTAG
130 AGCCCCAGCCAGACCGAGGGTTGTGGCAG
** * * * * * *
20908358 TGGGACCGACAGGACGTAGAGGGGGACCGAGCCAATCCCTGGCTTGTGCATTATGCCTCTCCGAC
1 CAGGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
* * * * * ** *
20908423 TGGCTCAGCGCCCGAACACTTGTTTCGTGGGTTGACTTAGGCATACAAAGTTTATTCCCA-GTCT
65 CGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
** * *
20908487 AAG-ATCAGACCGGATCGAGGGTTGTGGCAG
129 AAGCCCCAG-CCAGACCGAGGGTTGTGGCAG
* * ** * * * ** *
20908517 CAAGATCGATAGCACGCAGGGGGGACCGAGAAGGTCCCCGACTTGTGCATTCA-GCCTCTTTGAT
1 CAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATT-ATGCCTCTCCGAC
* * * * * * * *
20908581 CGGTTGATCCCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
65 CGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
20908646 AGC
130 AGC
20908649 ATACGGAGTT
Statistics
Matches: 465, Mismatches: 130, Indels: 25
0.75 0.21 0.04
Matches are distributed among these distances:
157 6 0.01
158 222 0.48
159 230 0.49
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC
GGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGCCAGACCGAGGGTTGTGGCAG
Found at i:20908456 original size:317 final size:317
Alignment explanation
Indices: 20907896--20908648 Score: 913
Period size: 317 Copynumber: 2.4 Consensus size: 317
20907886 GATCAGCAGT
* ** * *
20907896 ACGCAGGGGGGACC-A-AACCGATCCCTGACTTGTGCATTCTGCTTCTCCGATCGACTGAG-TGC
1 ACGCAGGGGGGACCGAGAA--GATCCCCGACTTGCACATTCTGCCTCTCCGATCGACTGAGCAG-
* **
20907958 CCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG
63 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
20908023 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACACAGAAGGGGACTGGGCCGATCCCCGGCTTGC
128 GACCGAGGGTTATGGCAGCGGGACCGACAGCACACAGAAGGGGACCGAGCCAATCCCCGGCTTGC
* * * *
20908088 GTATTATGCCTCTTCGACCGGCTCAACGCCTGAACGTTCGTTTCATGGGTTGACTTAGGCATACA
193 GCATTATGCCTCTCCGACCGGCTCAACGCCCGAACCTTCGTTTCATGGGTTGACTTAGGCATACA
* * *
20908153 GAGTTTATTCCCAGTCTAAGATC-GAACCAGATCGAGGGTTGTGATAGCAGGATCGATAGC
258 AAGTTTATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGTGACAGCAAGATCGATAGC
* * ** * * *
20908213 ACGTAGGGGGGACCGGGCCGATTCCCGGCTTGCATATTCTGCCTCTCCGATCGACTGAGCAGCCG
1 ACGCAGGGGGGACCGAGAAGATCCCCGACTTGCACATTCTGCCTCTCCGATCGACTGAGCAGCCG
*
20908278 CACGCCCGTTTCATGGGTTGGCTTCGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
66 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
* * * ** * * *
20908343 CGAGGGTTATGGTAGTGGGACCGACAGGACGTAGAGGGGGACCGAGCCAATCCCTGGCTTGTGCA
131 CGAGGGTTATGGCAGCGGGACCGACAGCACACAGAAGGGGACCGAGCCAATCCCCGGCTTGCGCA
* * *
20908408 TTATGCCTCTCCGACTGGCTCAGCGCCCGAACACTT-GTTTCGTGGGTTGACTTAGGCATACAAA
196 TTATGCCTCTCCGACCGGCTCAACGCCCGAAC-CTTCGTTTCATGGGTTGACTTAGGCATACAAA
* *
20908472 GTTTATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAAGATCGATAGC
260 GTTTATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGACAGCAAGATCGATAGC
* ** * ** ** * **
20908530 ACGCAGGGGGGACCGAGAAGGTCCCCGACTTGTGCATTCAGCCTCTTTGATCGGTTGATCCCCCG
1 ACGCAGGGGGGACCGAGAAGATCCCCGACTTGCACATTCTGCCTCTCCGATCGACTGAGCAGCCG
* * * * *
20908595 TACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
66 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20908649 ATACGGAGTT
Statistics
Matches: 366, Mismatches: 65, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
317 362 0.99
318 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (317 bp):
ACGCAGGGGGGACCGAGAAGATCCCCGACTTGCACATTCTGCCTCTCCGATCGACTGAGCAGCCG
CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
CGAGGGTTATGGCAGCGGGACCGACAGCACACAGAAGGGGACCGAGCCAATCCCCGGCTTGCGCA
TTATGCCTCTCCGACCGGCTCAACGCCCGAACCTTCGTTTCATGGGTTGACTTAGGCATACAAAG
TTTATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGACAGCAAGATCGATAGC
Found at i:20908846 original size:26 final size:26
Alignment explanation
Indices: 20908816--20908871 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
20908806 TGGGTTGACT
**
20908816 TAAGCATATGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
20908842 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
20908868 TAAG
1 TAAG
20908872 ATTGGATAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:20908908 original size:198 final size:185
Alignment explanation
Indices: 20908777--20909388 Score: 447
Period size: 173 Copynumber: 3.4 Consensus size: 185
20908767 AGCCTTTTCA
* * *
20908777 GCCGACTGAGCT-CCCGCACGCTCGTTTCATGGGTTGACTTAAGCATATGGAGTTCATCCCCA-G
1 GCCGACTGAG-TGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCAT-TCCATG
* * * * *
20908840 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGA-TAAGACCGAGGGTTACGGCAACAGGA
64 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGCACT-AGACCGAGGGTTACAGCAACAAGA
* * *
20908904 TCGACAGCACGCAAGGGGGGACTGACCCGCTCCCCGACTTACGCATTCTGCCTCTCCG
128 TCGACAGCACGCAAGGAGGGACAGACCCGATCCCCGACTTACGCATTCTGCCTCTCCG
* **
20908962 GTCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
1 GCCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTC
* **
20909027 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCGGACCGAGGGTT--A-CAAC-AGCAT
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GCACTAGACCGAGGGTTACAGCAACAAG-AT
* ** * * * * *
20909087 -G-CA--A-G---GG-GGGACCGGGCCGATCTCTGGCTTGCGCATTCTGACTCTCCG
129 CGACAGCACGCAAGGAGGGACAGACCCGATCCCCGACTTACGCATTCTGCCTCTCCG
* * ** ** * * * * * *
20909135 GTCGACTAAACGCCCGCACATTCATTTCGTGGGTTGACTTAGGCATACGGAGTTAATCCCCA-GT
1 GCCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCAT-TCCATGT
* * * * * * * *
20909199 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCGGTAGCAGGAT
65 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GCACTAGACCGAGGGTTACAGCAACAAGAT
* * * ** * * *
20909263 TGATAGCACGC-AGGGGGGATC-GGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCA
129 CGACAGCACGCAAGGAGGGA-CAGACCCGATCCCCGACTTACGCATTCTGCCTCTCCG
* * * * * ** * *
20909319 GTCGGCTGAGTGCCCACACGCCCATTTTGTGGGTTGGCTTAGGCATAAGGATTTCATTCCATGTC
1 GCCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTC
20909384 TAAGC
66 TAAGC
20909389 CCCAGCCAGA
Statistics
Matches: 345, Mismatches: 62, Indels: 41
0.77 0.14 0.09
Matches are distributed among these distances:
173 128 0.37
174 5 0.01
176 4 0.01
177 3 0.01
178 2 0.01
180 3 0.01
181 3 0.01
182 6 0.02
183 5 0.01
184 89 0.26
185 96 0.28
186 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (185 bp):
GCCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGCACTAGACCGAGGGTTACAGCAACAAGATCG
ACAGCACGCAAGGAGGGACAGACCCGATCCCCGACTTACGCATTCTGCCTCTCCG
Found at i:20909034 original size:26 final size:26
Alignment explanation
Indices: 20909004--20909056 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20908994 GTTGGCTTAG
20909004 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
20909030 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
20909056 G
1 G
20909057 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:20909213 original size:26 final size:26
Alignment explanation
Indices: 20909177--20909229 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20909167 GTTGACTTAG
*
20909177 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* *
20909203 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
20909229 G
1 G
20909230 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:20909555 original size:26 final size:26
Alignment explanation
Indices: 20909519--20909570 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20909509 GTTGGCTTAG
20909519 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20909545 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20909571 CATCAGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20910210 original size:11 final size:11
Alignment explanation
Indices: 20910194--20910218 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
20910184 CCCAAGGCAC
20910194 CATCGTCGGAG
1 CATCGTCGGAG
20910205 CATCGTCGGAG
1 CATCGTCGGAG
20910216 CAT
1 CAT
20910219 TGCCGGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:20910539 original size:23 final size:23
Alignment explanation
Indices: 20910513--20910565 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
20910503 ATACAAAGAT
20910513 AAACTCTACCAAATTTTGTGACA
1 AAACTCTACCAAATTTTGTGACA
20910536 AAACTCTACCAAATTTTGTGACA
1 AAACTCTACCAAATTTTGTGACA
20910559 AAACTCT
1 AAACTCT
20910566 TTCGAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.30
Consensus pattern (23 bp):
AAACTCTACCAAATTTTGTGACA
Found at i:20910858 original size:26 final size:26
Alignment explanation
Indices: 20910829--20910881 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20910819 GTTGACTTAG
20910829 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
20910855 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20910881 G
1 G
20910882 ATCGAAACGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20911310 original size:159 final size:159
Alignment explanation
Indices: 20910896--20911311 Score: 417
Period size: 159 Copynumber: 2.6 Consensus size: 159
20910886 AAACGGATCG
* * * *
20910896 AGGGTTGCGACAGCAGGATCGACAGCACGTAG-GGGGGACCGGGCCAATCCTCGACTTACGCATT
1 AGGGCTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCGGGTCGATCCTCGACTTACGCATT
** * * * * * * *
20910960 CTGCCTCTCCGGCTAGCTGAGTGCCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
20911025 CATTCCATGTCCAAGCCCCAACCAGAACA
131 CATTCCATATACAAGACCCAACCAGAACA
* * * * * * *
20911054 AGGGTTGTGGCAGC-GAGACCGACAGCACGTAGAGGGGGGCCGGGTCGATCCTCGGCTTGCGCTT
1 AGGGCTGCGGCAGCAG-GATCGACAGCACGTAGAGGGGGACCGGGTCGATCCTCGACTTACGCAT
* * * * *
20911118 TATGCCTCTCCGATCGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
65 TCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* ** *
20911183 TCATTCCCA-ATACAAGATCGGACCAG-ACTG
130 TCATT-CCATATACAAGACCCAACCAGAAC-A
* * * * * *
20911213 AGGGCTGCGGTAGCAGGATCGACAGGACGTAGAGGGAGATCGGGTCGATCCCCGACTTTCGCATT
1 AGGGCTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCGGGTCGATCCTCGACTTACGCATT
* *
20911278 CTGCCTTTCCGATTGGTTGAGCGCCCGCACGCTC
66 CTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTC
20911312 GTTCTATATG
Statistics
Matches: 204, Mismatches: 49, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
157 1 0.00
158 29 0.14
159 170 0.83
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (159 bp):
AGGGCTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCGGGTCGATCCTCGACTTACGCATT
CTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCATATACAAGACCCAACCAGAACA
Found at i:20911360 original size:26 final size:26
Alignment explanation
Indices: 20911331--20911383 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20911321 GTCAGCTTAG
20911331 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
20911357 GCATACTGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20911383 G
1 G
20911384 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20911539 original size:195 final size:184
Alignment explanation
Indices: 20911172--20911737 Score: 473
Period size: 195 Copynumber: 3.0 Consensus size: 184
20911162 GTTGACTTAG
* * * * * * ** * * *
20911172 GCATACGGAGTTCATTCCCAATAC-AAGATCGGACCAGACTGAGGGCTGCGGTAGCAGGATCGAC
1 GCATACGAAGTTCATTCCCAGT-CTAAGATAGAACCAGACCGAGGGTTGTAGCAGCAGGATAGGC
* * * * * * * * * *
20911236 AGGACGTAGAGGGAGATCGGGTCGATCCCCGACTTTCGCATTCTGCCTTTCCGATTGGTTGAGCG
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCG
* ** * *
20911301 CCCGCACGCTCG-TTCTATATG-TCAGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCCGCAAGCTCGTTTC-ATGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
20911357 GCATACTG-AGTTTATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGGGGTAGCAGGCCAGC
1 GCATAC-GAAGTTCATTCCCAGTCTAAGAT-AGAACCAGACCGAGGGTT---GTAGCA-G-CAG-
* * *
20911420 GGTAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCACTT-TGCCTCTCCG
58 GATAGG--C---AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCA-TTCTGCCTCTCCG
** *
20911484 GTCGGCTGAGCGCCCGCACAG-TCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-G
117 GTCGGCTGAGCGCCCGCA-AGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCATG
20911547 TCTAA
180 TCTAA
* *
20911552 GCATACGAAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGTAGCAGCAGGATTGGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTGTAGCAGCAGGATAGGCA
* * * * * *
20911617 GCACGCAGGGGGGACCTGGTCGATCCTCGACTTACGTATTCTGCCTCTCTGGTCGGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * * * *
20911682 CGCATGCTTGTTTCATGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTAA
131 CGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
20911736 GC
1 GC
20911738 CCCAGCTGGA
Statistics
Matches: 305, Mismatches: 52, Indels: 49
0.75 0.13 0.12
Matches are distributed among these distances:
183 6 0.02
184 98 0.32
185 35 0.11
186 2 0.01
187 1 0.00
188 3 0.01
189 5 0.02
190 6 0.02
191 4 0.01
192 6 0.02
193 1 0.00
194 2 0.01
195 119 0.39
196 17 0.06
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTGTAGCAGCAGGATAGGCA
GCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:20911563 original size:26 final size:26
Alignment explanation
Indices: 20911526--20911578 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20911516 GTTGACTTAG
*
20911526 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
20911552 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20911578 G
1 G
20911579 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20911907 original size:26 final size:26
Alignment explanation
Indices: 20911871--20911921 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20911861 TGGCTTAGGC
20911871 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
20911897 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
20911922 ACTTTGAGCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:20912639 original size:26 final size:26
Alignment explanation
Indices: 20912603--20912655 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20912593 GTTGACTTAG
20912603 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
20912629 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20912655 G
1 G
20912656 ATCCGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20913111 original size:26 final size:26
Alignment explanation
Indices: 20913063--20913115 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20913053 GTTGACTTAG
* *
20913063 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACAGAGTTCATCCTCAGTCTAA
20913089 GCATACAGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGTTCA-TCCTCAGTCTAA
20913115 G
1 G
20913116 TTTGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAGTCTAA
Found at i:20913409 original size:461 final size:461
Alignment explanation
Indices: 20912502--20913427 Score: 1208
Period size: 460 Copynumber: 2.0 Consensus size: 461
20912492 AAATATGAAG
*
20912502 ATGTGCTTGAAACCACATACCACCCATTCGATACCCGGCTTGCGCATCCTGCCTCTCTGGTCGGT
1 ATGTGCTTGAAACCACATACCACCCATTCGATACCCGGCTTGCGCATCCTGCCTCTCTGGTCGGC
* * *
20912567 TGAGCATCCACAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
66 TAAGCATCCACAAGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
** * * *
20912632 TATGGAGTTCATTCCCAGTCTAAGATCCGACCGGATCGAGGGTTACGGTAGCAGGATCGACAGCA
131 TACAGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTGACGGTAGCAGGATCGACAGCA
* * ** ** *
20912697 CGCAGGAGGGACTGAGCAGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCCCCGCA
196 CGCAGGAGGGACCGAGCAGATCCCCAACTTGCACATTCTAACTCTCCGACCGACTGAGCCCCGCA
* * *
20912762 CACCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTG
261 CACCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTG
* * * *
20912827 AGGGTTGTGGCAGCGGGACTGATAGCACGTAGAGGGGGACCGAAAAAATCCCTGGCTTATACATT
326 AGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAAAAAATCCCTGGCTTACACATT
* * * * *
20912892 CTGCCTCTCCAGCTGGCTGCGTGTCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTT
391 CTGCCTCTACAGCTGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTT
*
20912957 TATTCC
456 CATTCC
* * * * * *
20912963 ATGTGCTTGAACCCACCT-CCACCCGTTCGATCCCCGGTTTGTGCATCCTGCCTCTCTGGTCGGC
1 ATGTGCTTGAAACCACATACCACCCATTCGATACCCGGCTTGCGCATCCTGCCTCTCTGGTCGGC
* * * *
20913027 TAAGCGTCTACACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCTTAGTCTAAGCA
66 TAAGCATCCACAAGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
* ** * * **
20913092 TACAGAGTTCATTCCCAGTCTAAGTTTGGATCAGACCGAGGGTGGCGGTAGCAGGATCGGTAGCA
131 TACAGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTGACGGTAGCAGGATCGACAGCA
* * * *
20913157 CGCAGGGGGGACCGGGCCGATCCCCAACTTGCACATTCTAACTCTCC-ATCCGACTGAGCGTCCG
196 CGCAGGAGGGACCGAGCAGATCCCCAACTTGCACATTCTAACTCTCCGA-CCGACTGAGC-CCCG
* * *
20913221 CACGCCCGTTTCATGGGTTTGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
259 CACACCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
* * ***** * **
20913286 TGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGTA
324 TGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAAAAAATCCCTGGCTTACACA
* * ** *
20913351 TTCTGGCTCTACGGCTGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAG
389 TTCTGCCTCTACAGCTGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAG
20913416 TTCATTCC
454 TTCATTCC
20913424 ATGT
1 ATGT
20913428 CTAAGCATAC
Statistics
Matches: 395, Mismatches: 68, Indels: 4
0.85 0.15 0.01
Matches are distributed among these distances:
459 1 0.00
460 199 0.50
461 195 0.49
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (461 bp):
ATGTGCTTGAAACCACATACCACCCATTCGATACCCGGCTTGCGCATCCTGCCTCTCTGGTCGGC
TAAGCATCCACAAGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTGACGGTAGCAGGATCGACAGCA
CGCAGGAGGGACCGAGCAGATCCCCAACTTGCACATTCTAACTCTCCGACCGACTGAGCCCCGCA
CACCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTG
AGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAAAAAATCCCTGGCTTACACATT
CTGCCTCTACAGCTGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTT
CATTCC
Found at i:20914528 original size:159 final size:157
Alignment explanation
Indices: 20914144--20914545 Score: 371
Period size: 159 Copynumber: 2.5 Consensus size: 157
20914134 TCTAATCTAA
* * * * *
20914144 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGAACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * * ** * *
20914209 GCACGCAGTGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGTGCC
66 GCACGCAGGGGGGACC-GGCCAATCCCTGACTTACGCATTATGCATCTCCGACCAACTCAGCGCC
* * * * *
20914274 CGGATGCCCGTTTCATGGGTTGGCTTAG
130 CGAACGCCCATTTCATGAGTTGACTTAG
* * * * ** * ** * *
20914302 GCATAGGGATTTCATTCCATGTCTAAG-CCCTAGTCTGG-CTGAGGGTTGTGGCAG-TGAGACCG
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGGA-TC-GGACCGAGGGTTACGGCAGCAG-GATCG
*
20914364 GCAGCACGCAGAGGGGGACCAGGCCAAT-CCTCGACTTACGCATTATGCATCTCCGACCAACTCA
63 ACAGCACGCAG-GGGGGACC-GGCCAATCCCT-GACTTACGCATTATGCATCTCCGACCAACTCA
* *
20914428 GCGCCTGAACGCTCATTTCATGAGTTGACTTAG
125 GCGCCCGAACGCCCATTTCATGAGTTGACTTAG
* * *
20914461 GCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGACCAAGGCTTACGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATCGACA
*
20914526 GCACACAGGGGGGACCGGCC
66 GCACGCAGGGGGGACCGGCC
20914546 CATTTCATGG
Statistics
Matches: 185, Mismatches: 51, Indels: 17
0.73 0.20 0.07
Matches are distributed among these distances:
157 6 0.03
158 63 0.34
159 113 0.61
160 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGCCAATCCCTGACTTACGCATTATGCATCTCCGACCAACTCAGCGCCC
GAACGCCCATTTCATGAGTTGACTTAG
Found at i:20914874 original size:26 final size:26
Alignment explanation
Indices: 20914844--20914896 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20914834 GTTGACTTAG
*
20914844 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
20914870 GCATACGGAGTTTATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20914896 G
1 G
20914897 TTTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20915918 original size:26 final size:26
Alignment explanation
Indices: 20915889--20915941 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20915879 GTTGACTTAG
* *
20915889 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
20915915 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
20915941 G
1 G
20915942 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:20916101 original size:26 final size:26
Alignment explanation
Indices: 20916072--20916124 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20916062 GTAGGCTTAG
*
20916072 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
20916098 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
20916124 G
1 G
20916125 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:20916485 original size:184 final size:184
Alignment explanation
Indices: 20915818--20916871 Score: 692
Period size: 184 Copynumber: 5.5 Consensus size: 184
20915808 CACCTATTCA
* * * * * ** * * * *
20915818 ATCCCTGGCTTG-AGCATCCTGCCTCTCTGGTCGGCTAAGCATCCGCATGCTTGTTTCGTCGGTT
1 ATCCCTGACTTGCA-CATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * *
20915882 GACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCA
65 GACTTAGGCATACGGAGTTCATCCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *** *
20915946 GACCGGACCGAGGGTTGTAG-CAGTAGGATCGGTAACACGTA-GGGGGACCGGGCCG
130 GA-CGGATCGAGGGTTGTAGACAGCAGG-TCGGTAGCACGCAGGGGGGATTAGGTCG
* * * * ** *
20916001 AT-CCTCGGCTTGCGCATTCTGTCTCTTCGA-CTGGCTGAGTACCCGCACGCTCG-TTCTGTGGG
1 ATCCCT-GACTTGCACATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCGTTTC-ATGGG
* * * * * *
20916063 TAGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGAAGTTCATTCCTAGTCTAAGAT
63 TTGACTTAGGCATACGGAGTTCATCCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
20916127 CGGACCGGACCGAGGGTTACGGTAACAGGACCAGCAGCAGAATCGATAGCACGCAGGAGGGGATC
128 CGGA-CGGATCGAGGGTT---GT---A-GA-CAGCAG--G--TCGGTAGCACGCAGG-GGGGATT
* *
20916192 GGGCCG
179 AGGTCG
** * * * * * *
20916198 AT-CCTCGACTTGTGCATTTTACCTCTTCG-GCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGT
1 ATCCCT-GACTTGCACATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * *
20916261 TGACTTGGGCATACAGAGTTCATCCCCAAT-T-TAAGCATACGAAGTTCATTCCGAGTCTAAGAT
64 TGACTTAGGCATACGGAGTTCATCCCC-ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
*
20916324 CGGATCGGATCGAGGGTTGTAG-CAGCAGGTCGGTAGCACGCAGGGGGGAATTGGGTCG
128 CGGA-CGGATCGAGGGTTGTAGACAGCAGGTCGGTAGCACGCAGGGGGG-ATTAGGTCG
* * *
20916382 ATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCCGAGCGCCCACACGCTCATTTCATGGGTTG
1 ATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * * *
20916447 GCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGCATACGGAGCTCATTCCCAATCTAAGATCGG
66 ACTTAGGCATACGGAGTTCATCCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * *
20916511 ACCAGACCGATTACGGTAGTAAGACCAGCA-G-CAGGATCAGC-CGCATATAGGCGGGGACTAGG
131 A-CGGATCG---AGGGTTGT-AGA-CAGCAGGTC-GG-T-AGCACGC----AGG-GGGGATTAGG
20916573 TCG
182 TCG
* *
20916576 ATCCCTGACTTGCGTATTCTGCCTTTTCGGTAGGCCTCTCCGATCGGTTGAGCAG-CCGCACGCT
1 ATCCCTGACTTGC--A------C-ATTC--T--GCCTCTCCGATCGGCTGAGC-GCCCGCACGCT
* *
20916640 CGTTTCATGGGTTGACTTAGGCAAACGGTGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCC
52 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCATGTCTAAGCATACGGAGTTCATTCC
* * ** *
20916704 CAGTCTAAGATCAGACTGGATCGAGGGTTG-CGACAGCAGGATCGACAGCACGCAGGGGGGATCA
117 CAGTCTAAGATCGGAC-GGATCGAGGGTTGTAGACAGCAGG-TCGGTAGCACGCAGGGGGGATTA
20916768 GGTCG
180 GGTCG
* *** * * * *
20916773 ATCCCCGACTTATGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTCGGTTG
1 ATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
20916838 GCTTAGGCATACGAAGTTCAT-TCCATGTCTAAGC
66 ACTTAGGCATACGGAGTTCATCCCCATGTCTAAGC
20916872 CCCAGTCAGA
Statistics
Matches: 699, Mismatches: 108, Indels: 127
0.75 0.12 0.14
Matches are distributed among these distances:
182 12 0.02
183 121 0.17
184 186 0.27
185 4 0.01
186 4 0.01
187 6 0.01
188 12 0.02
189 5 0.01
190 11 0.02
191 4 0.01
192 5 0.01
194 26 0.04
195 15 0.02
196 2 0.00
197 148 0.21
198 9 0.01
199 2 0.00
201 8 0.01
202 7 0.01
203 4 0.01
204 6 0.01
205 1 0.00
206 1 0.00
207 96 0.14
208 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
ATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATCCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACGGATCGAGGGTTGTAGACAGCAGGTCGGTAGCACGCAGGGGGGATTAGGTCG
Found at i:20916728 original size:391 final size:378
Alignment explanation
Indices: 20915850--20916871 Score: 1078
Period size: 391 Copynumber: 2.7 Consensus size: 378
20915840 CTCTCTGGTC
* * * * *
20915850 GGCTAAGCATCCGCATGCTTGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
1 GGCTGAGCAGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
20915915 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTAGCAGTAGGATCGGTA
66 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTAGCAGCAGGATCGGTA
* * * * * * * **
20915980 ACACGTA-GGGGGACCGGGCCGAT-CCTCGGCTTGCGCATTCTGTCTCTTCGA-CTGGCTGAGTA
131 GCACGCAGGGGGGATCGGGTCGATCCCT-GACTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCG
* * *
20916042 CCCGCACGCTCGTTCTGTGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGAA
194 CCCGCACGCTCTTTC-GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAA
* * * * *
20916107 GTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAACAGGACCAGCAGCAGAATCG
258 GCTCATTCCCAATCTAAGATCGGACCAGACCGA--GTTACGGTAACAAGACCAGCAGCAGAATCG
* * * *
20916172 ATAGCACGCAGGAGGGGATCGGGCCGATCCTCGACTTGTGCATTTTACCTCTTCGGCT
321 ACAGCACACAGGAGGGGATCAGGCCGATCCTCGACTTGTGCATTTTACCTCTCCGGCT
* * * * *
20916230 GGCTGAGC-GCCCGTACGCTCGTTTCGTGGGTTGACTTGGGCATACAGAGTTCATCCCCAATTTA
1 GGCTGAGCAG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* *
20916294 AGCATACGAAGTTCATTCCGAGTCTAAGATCGGA-TCGGATCGAGGGTTGTAGCAGCAGG-TCGG
65 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGGTTGTAGCAGCAGGATCGG
* * *
20916357 TAGCACGCAGGGGGGAATTGGGTCGATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCCGAGC
129 TAGCACGCAGGGGGG-ATCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * * *
20916422 GCCCACACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGG
193 GCCCGCACGCTC-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
** *
20916487 AGCTCATTCCCAATCTAAGATCGGACCAGACCGA-TTACGGTAGTAAGACCAGCAGCAGGATC-A
257 AGCTCATTCCCAATCTAAGATCGGACCAGACCGAGTTACGGTAACAAGACCAGCAGCAGAATCGA
* * * * * *
20916550 GCCGCATATAGGCGGGGA-CTAGGTCGATCC-CTGACTTGCGTATTCTGCCTTTTCGGTAGGCCT
322 -CAGCACACAGGAGGGGATC-AGGCCGATCCTC-GACTT--G-----TG-CATTT---TA--CCT
*
20916613 CTCC-GAT
371 CTCCGGCT
* * * *
20916620 CGGTTGAGCAGCCGCACGCTCGTTTCATGGGTTGACTTAGGCAAACGGTGTTCATCCCCAGTCTA
1 -GGCTGAGCAGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * *
20916685 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTG-CGACAGCAGGATCGA
65 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTAG-CAGCAGGATCGG
* * * ** * *
20916749 CAGCACGCAGGGGGGATCAGGTCGATCCCCGACTTATGCATTCTACCTCTCCGGTCGGCTGAGCG
129 TAGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* *
20916814 CCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
194 CCCGCACGCTC-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20916872 CCCAGTCAGA
Statistics
Matches: 530, Mismatches: 84, Indels: 45
0.80 0.13 0.07
Matches are distributed among these distances:
377 3 0.01
378 48 0.09
379 11 0.02
380 111 0.21
381 117 0.22
382 7 0.01
385 2 0.00
386 4 0.01
389 2 0.00
390 3 0.01
391 203 0.38
392 19 0.04
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (378 bp):
GGCTGAGCAGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTAGCAGCAGGATCGGTA
GCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGCT
CATTCCCAATCTAAGATCGGACCAGACCGAGTTACGGTAACAAGACCAGCAGCAGAATCGACAGC
ACACAGGAGGGGATCAGGCCGATCCTCGACTTGTGCATTTTACCTCTCCGGCT
Found at i:20917045 original size:26 final size:25
Alignment explanation
Indices: 20917016--20917094 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 25
20917006 GTTGAATTAG
20917016 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
20917042 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCAT-TCCAGTCTAA
20917068 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
20917094 G
1 G
20917095 ATCAGACCGG
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.02
26 47 0.92
27 3 0.06
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:20917489 original size:159 final size:159
Alignment explanation
Indices: 20917211--20917498 Score: 346
Period size: 159 Copynumber: 1.8 Consensus size: 159
20917201 TGCCCGTTCC
* * * * * *
20917211 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGATTGTGG
1 ATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGCCAGACCAAGGATTATGG
* * * * ** * *
20917276 CAGTGGAATCGATAACACGCAGAGGGGGATCGGGTCGATCCCCGCCTTGTGCATTCTGCCTCTCC
66 CAGAGGAATCGACAACACGCAGAGGAGGATCGGGTCGATCCCCGACTTACGCATTATACCTCTCC
20917341 GACCGGTTGAGCGCCCGTATGCTCGTTTT
131 GACCGGTTGAGCGCCCGTATGCTCGTTTT
* * *
20917370 ATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCAGCAGTCAGACCAAGGGTTATGG
1 ATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGCCAGACCAAGGATTATGG
* * * * *
20917435 CAGCAGG-ATCGGCAGCATGTAGAGGAGGATCGGG-CTGATCCTCGACTTACGCATTATACCTCT
66 CAG-AGGAATCGACAACACGCAGAGGAGGATCGGGTC-GATCCCCGACTTACGCATTATACCTCT
20917498 C
129 C
20917499 TAGGCGGCCT
Statistics
Matches: 105, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 1 0.01
159 102 0.97
160 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (159 bp):
ATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGCCAGACCAAGGATTATGG
CAGAGGAATCGACAACACGCAGAGGAGGATCGGGTCGATCCCCGACTTACGCATTATACCTCTCC
GACCGGTTGAGCGCCCGTATGCTCGTTTT
Found at i:20917966 original size:159 final size:158
Alignment explanation
Indices: 20917583--20917984 Score: 343
Period size: 159 Copynumber: 2.5 Consensus size: 158
20917573 CCAGTCTAAA
* * * * ** * *
20917583 CATACGAAGTTCATCCCCAGTCTAAGATCGGATCAAACTGAGGGATGTGGCAGTAGGATCGATAG
1 CATACGGAGTTCATTCCCAGTGTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACAG
* * ** *
20917648 CACGCAGGGGGGACCAGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCGACCGGTTGAGCGCCT
66 CACGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGACCGACTCAGCGCCT
*
20917713 ACACGCCCGTTTCATGGGTTAGCTTAGG
131 ACACGCCCATTTCATGGGTTAGCTTAGG
* * * *
20917741 CATAGGGAGTTCATT-CCA-TGCCTAA-ACCCCAG-TCGGACCGAGGGTTGTGGCAG-CGAGA-C
1 CATACGGAGTTCATTCCCAGTG--TAAGA--TCAGATCGGACTGAGGGTTGTGGCAGTAG-GATC
* * * * * ** * *
20917800 TGGCAGCACGTAGAGGGGGATCGGGCTGAT-CCTTGACTTGCGCCTTATGCCTCTTCGGCCGACT
61 -GACAGCACGCAG-GGGGGACCAGGCCGATCCCCAG-CTTGCGCATTATGCCTCTTCGACCGACT
* ** ** *
20917864 CAGTGCCTGGACGTTCATTTCATGGGTT-GACTTGGG
123 CAGCGCCTACACGCCCATTTCATGGGTTAG-CTTAGG
20917900 CATACGGAGTTCATTCCCAGTGTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTGTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACAG
* * *
20917965 CAAGCAGGGAGGACCGGGCC
66 CACGCAGGGGGGACCAGGCC
20917985 AATCTTCGGC
Statistics
Matches: 186, Mismatches: 43, Indels: 30
0.72 0.17 0.12
Matches are distributed among these distances:
156 1 0.01
157 6 0.03
158 60 0.32
159 111 0.60
160 6 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.22
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCAGTGTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGACAG
CACGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGACCGACTCAGCGCCT
ACACGCCCATTTCATGGGTTAGCTTAGG
Found at i:20918093 original size:26 final size:26
Alignment explanation
Indices: 20918057--20918109 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20918047 GTTGGCTTAG
20918057 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
20918083 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
20918109 G
1 G
20918110 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:20918453 original size:26 final size:26
Alignment explanation
Indices: 20918424--20918476 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20918414 GTTGACTTAG
20918424 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
20918450 GCATACATAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20918476 G
1 G
20918477 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20918961 original size:26 final size:26
Alignment explanation
Indices: 20918925--20918975 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20918915 CTTGGCTTAG
20918925 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20918951 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
20918976 TGATTTTAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20921305 original size:159 final size:160
Alignment explanation
Indices: 20921125--20921489 Score: 443
Period size: 159 Copynumber: 2.3 Consensus size: 160
20921115 CGCATGCCCG
* * *
20921125 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGT
* * * * *
20921189 TGTGGCAGCGGGATCGATAGCATGCAGAGGGGGACCAGGA-CAATCCTCAACTTGCGCATTATGC
66 TGTGGCAGCAGGATCGACAGCATGCAGAGGGGGACC-GGACCAATCCCCAACTTACGCATTATAC
* *
20921253 CTCTTC-AACAAGCTCAGCACCCGCACACTCA
130 CTCTCCGAACAA-CTCAACACCCGCACACTCA
* * *
20921284 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACA-GTCTAAG-ATCAGACCGGATCGAGGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCACCAGACCGGACCGAGGG
* * * * * *
20921347 TTGTGGCAGTAGGATTGACAGCATGCAGAGGGGGACCGGACCGATCCCCAGCTTACGGATTCTAC
65 TTGTGGCAGCAGGATCGACAGCATGCAGAGGGGGACCGGACCAATCCCCAACTTACGCATTATAC
* * * * *
20921412 CTCTCCGATCGACTGAACGCCCGCACGCTCA
130 CTCTCCGAACAACTCAACACCCGCACACTCA
*
20921443 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20921490 TATGGAGTTC
Statistics
Matches: 174, Mismatches: 26, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
158 8 0.05
159 160 0.92
160 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (160 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGT
TGTGGCAGCAGGATCGACAGCATGCAGAGGGGGACCGGACCAATCCCCAACTTACGCATTATACC
TCTCCGAACAACTCAACACCCGCACACTCA
Found at i:20921497 original size:26 final size:26
Alignment explanation
Indices: 20921461--20921513 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20921451 GTTGGCTTAG
20921461 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20921487 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20921513 G
1 G
20921514 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20921864 original size:26 final size:26
Alignment explanation
Indices: 20921828--20921878 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20921818 GTTGACTTAG
20921828 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
20921854 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
20921879 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20923046 original size:26 final size:26
Alignment explanation
Indices: 20923016--20923068 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20923006 GTTGACTTAG
*
20923016 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACCGAGTTCATCCCTAGTCTAA
*
20923042 GCATACCGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATCCCTAGTCTAA
20923068 G
1 G
20923069 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCTAGTCTAA
Found at i:20923555 original size:26 final size:26
Alignment explanation
Indices: 20923505--20923557 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20923495 GTTAGCTTAG
*
20923505 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20923531 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20923557 G
1 G
20923558 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20924081 original size:184 final size:184
Alignment explanation
Indices: 20923636--20924096 Score: 493
Period size: 184 Copynumber: 2.5 Consensus size: 184
20923626 GTCGATCCTA
* * * *
20923636 GGCTTGCGCATTCTGCCTCTCCGACTGGTTGAGTGCCTGCACGCTCGTTCCATGGGTTGACTTAG
1 GGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCCCGTTTCATGGGTTGACTTAG
* * * * * * *
20923701 GCATATGGAGTTCATC-CCCAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATTGGACCAAA
66 GCATACGGAGTTCATCTCCC-TTCTAAGCATACGAAGTTCATTCACAGGCTAAAACTGGAACAAA
**
20923765 CCGAGGGTTGGGACAGCAGGATCGACAGCACGCAGGGGGGATCCGGCCGGTCCCC
130 CCGAGGGTTGGGACAGCAGGATCGACAGCACGCAGGGGGGATCCGGCCAATCCCC
* * ** * ** * *
20923820 GGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCACCCGCACGCTCC-TTTCTTAGGTTGACTTA
1 GGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGC-CCGTTTCATGGGTTGACTTA
* * *
20923884 GGCATACGGAGTTCATCTCCCTTCTAAGCATGCGAAGTTCATTCACAGGCTAAAACT-GAATAGG
65 GGCATACGGAGTTCATCTCCCTTCTAAGCATACGAAGTTCATTCACAGGCTAAAACTGGAACA-A
** * *
20923948 TTCGAGGGTTGCGG-CAGCAGGATCGACAGCATGCAGGGGGGA-CCGAGCCAATCCCT
129 ACCGAGGGTTG-GGACAGCAGGATCGACAGCACGCAGGGGGGATCCG-GCCAATCCCC
* * * * * *
20924004 GGCTTGCGCATTCTGTCTCTCCGACCGATTGAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAT
1 GGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCCCGTTTCATGGGTTGACTTAG
* *
20924069 GCATAGGGAGTTCAT-TCCATGTCTAAGC
66 GCATACGGAGTTCATCTCCCT-TCTAAGC
20924097 CCCAGCTGGA
Statistics
Matches: 225, Mismatches: 45, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
183 12 0.05
184 207 0.92
185 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (184 bp):
GGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCCCGTTTCATGGGTTGACTTAG
GCATACGGAGTTCATCTCCCTTCTAAGCATACGAAGTTCATTCACAGGCTAAAACTGGAACAAAC
CGAGGGTTGGGACAGCAGGATCGACAGCACGCAGGGGGGATCCGGCCAATCCCC
Found at i:20924218 original size:159 final size:158
Alignment explanation
Indices: 20924051--20924413 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 158
20924041 CGCATGCCCG
* * * * *
20924051 TTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGATTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACTGAGGGT
** * * *
20924115 TGTGGCAGTGGGA-CAGGCAGCACACAGAGGGGGACCGGGTCGATCCCC-AGCTTGCGCATTATG
66 TGCAGCAGTAGGATCA-ACAGCACACAG-GGGGGACCGGGCCGATCCCCGA-CTTGCGCATTATG
*
20924178 CCTCTCCGATCAGCTCAGCGCCCGAACGCTCA
128 CCTCTCCGATCAGCTCAGC-ACCGAACGCTCA
* * *
20924210 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACTGAGGG
* * * * * *
20924273 TTGCAGTAGTAGGATCAACAGCATACAGGGGGTACCGGGCCGGTCCCCGACTTGCGCATTCTGGC
65 TTGCAGCAGTAGGATCAACAGCACACAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCC
* * * * * *
20924338 TCTCTGGTCGGCTGAGCATCGCACGCTCA
130 TCTCCGATCAGCTCAGCACCGAACGCTCA
* *
20924367 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20924414 TATGGAGTTC
Statistics
Matches: 168, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
156 3 0.02
157 46 0.27
158 48 0.29
159 66 0.39
160 5 0.03
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACTGAGGGT
TGCAGCAGTAGGATCAACAGCACACAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCT
CTCCGATCAGCTCAGCACCGAACGCTCA
Found at i:20924415 original size:26 final size:26
Alignment explanation
Indices: 20924385--20924437 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20924375 GTTGGCTTAG
20924385 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
20924411 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20924437 G
1 G
20924438 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20925134 original size:26 final size:26
Alignment explanation
Indices: 20925097--20925147 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20925087 GTTGACTTAG
20925097 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
20925123 GCATAC-GAAGTTCATTCCCAGTCTA
1 GCATACAG-AGTTCATCCCCAGTCTA
20925148 CACCCACGCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20928184 original size:24 final size:24
Alignment explanation
Indices: 20928157--20928218 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
20928147 TGAGAACTCG
* * *
20928157 TGGTCCACTGACCAACGTATCTCA
1 TGGTCTACTGACCAACGCAGCTCA
20928181 TGGTCTACTGACCAACGCAGCTCA
1 TGGTCTACTGACCAACGCAGCTCA
20928205 TGGTCTACTGACCA
1 TGGTCTACTGACCA
20928219 TCCCGCTTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (24 bp):
TGGTCTACTGACCAACGCAGCTCA
Found at i:20930669 original size:26 final size:26
Alignment explanation
Indices: 20930629--20930679 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20930619 TGGCTTAGGT
20930629 ATACGGAGTTCATT-CCATGTCTAACC
1 ATACGGAGTTCATTCCCA-GTCTAACC
*
20930655 ATACGGAGTTTATTCCCAGTCTAAC
1 ATACGGAGTTCATTCCCAGTCTAAC
20930680 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAACC
Found at i:20930854 original size:26 final size:26
Alignment explanation
Indices: 20930824--20930876 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20930814 GTTGACTTAG
*
20930824 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
**
20930850 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20930876 G
1 G
20930877 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20931203 original size:26 final size:26
Alignment explanation
Indices: 20931167--20931219 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20931157 GTTGGATTAG
20931167 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20931193 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20931219 G
1 G
20931220 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20931258 original size:12 final size:12
Alignment explanation
Indices: 20931241--20931270 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
20931231 CTAAGGGTTG
20931241 CGACAGTAAGAC
1 CGACAGTAAGAC
*
20931253 CGACAGTAAGAT
1 CGACAGTAAGAC
20931265 CGACAG
1 CGACAG
20931271 CACGCAGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.40, C:0.23, G:0.27, T:0.10
Consensus pattern (12 bp):
CGACAGTAAGAC
Found at i:20931567 original size:158 final size:159
Alignment explanation
Indices: 20931269--20931708 Score: 393
Period size: 158 Copynumber: 2.8 Consensus size: 159
20931259 TAAGATCGAC
* * * * * *
20931269 AGCACGCAGTGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAATG
1 AGCACGCAGTGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGTTGAATG
* * *
20931334 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
66 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATC
20931399 AGACCAAGGGTTGCAATAGCAGGATCGGT
131 AGACCAAGGGTTGCAATAGCAGGATCGGT
* *
20931428 AGCACGCAG-GGGGGACCAGGCCGATCCCCGACTTTCGTATTCTGCCTCTTCGATCGGTTGAGA-
1 AGCACGCAGTGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGTTGA-AT
* * * * *
20931491 GCCCGTACGCCCGTTTCATGGGTTGGCTTTGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG
65 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ACCAG
* ***** * *
20931555 -TCGGACCAAGGGTTATGGCAGCAGGACCAGT
128 ATCAGACCAAGGGTTGCAATAGCAGGATCGGT
* * ** * * * * * * * * * *
20931586 AACACGTAGAAGGGGACCAAGCCGATCCCTGGCTTACGCATTATGCCTTTTCGGTCGGCTCAACG
1 AGCACGCAGTGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGTTGAATG
* ** * * * ** * *
20931651 GCCAAACACTCATTTCGTGGGTTAACTTAGGCGTACGTAGTTCATTCCCAGTCTAAGA
66 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
20931709 TCGGACCGGA
Statistics
Matches: 224, Mismatches: 51, Indels: 13
0.78 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 124 0.55
159 94 0.42
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
AGCACGCAGTGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGTTGAATG
CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATC
AGACCAAGGGTTGCAATAGCAGGATCGGT
Found at i:20931889 original size:26 final size:26
Alignment explanation
Indices: 20931860--20931912 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20931850 GTTGACTTAG
20931860 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
20931886 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
20931912 G
1 G
20931913 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:20932082 original size:26 final size:26
Alignment explanation
Indices: 20932053--20932105 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20932043 GTTGACTTAG
20932053 GCATACGAACTTCATCCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
* * *
20932079 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
20932105 G
1 G
20932106 ATCGGAGTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAACTTCATCCCCAGTCTAA
Found at i:20933091 original size:26 final size:26
Alignment explanation
Indices: 20933051--20933103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20933041 GTTGACTTAG
20933051 GCATACGAAGATCA-TCCTCAGTCTAA
1 GCATACGAAGATCATTCCT-AGTCTAA
*
20933077 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGATCATTCCTAGTCTAA
20933103 G
1 G
20933104 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGATCATTCCTAGTCTAA
Found at i:20933602 original size:26 final size:26
Alignment explanation
Indices: 20933573--20933625 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20933563 GTTGACTTAG
*
20933573 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
20933599 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
20933625 G
1 G
20933626 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:20933791 original size:206 final size:205
Alignment explanation
Indices: 20933394--20933805 Score: 562
Period size: 206 Copynumber: 2.0 Consensus size: 205
20933384 GTTGACTTAG
**
20933394 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGACTAGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTACGGCAGCAGGACTAGTA
* * * * *
20933459 GCAGGATCAGTATCACGTAGGGGGGACCAGGCCGATCCCTGGCTTACGTATTTTGCCTCTCTGAC
66 GCAGGATCAGTAGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTACATATTCTACCTCTCTGAC
* * ** *
20933524 CGGCCTCTCTGGTCGACTGAGGACCCGTACGCTCATTTTGTTGACTTAGGCATATGGAGTTCA-T
131 CGGCCTCTCCGATCGACTGAGGACCCGTACGCTCATTGGGTTGACTTAGGCATACGGAGTTCATT
20933588 CCCTAGTCTAA
196 CCC-AGTCTAA
* * *
20933599 GCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCGGACTGAGGGTTACGGTAGCAGGACTAGT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACT-GGACTGAGGGTTACGGCAGCAGGACTAGT
** * *
20933663 AGCAGGATTGGTAGCACGCAGTGGGGGACTAGGCCGAT-CCTCGGCTTGCATATTCTACCTCT-T
65 AGCAGGATCAGTAGCACGCAG-GGGGGACCAGGCCGATCCCT-GGCTTACATATTCTACCTCTCT
* *
20933726 CGACCGGCCTCTCCGATCGACTTAGGACCCGTACGCTCGTTGGGTTGACTTAGGCATACGGAGTT
128 -GACCGGCCTCTCCGATCGACTGAGGACCCGTACGCTCATTGGGTTGACTTAGGCATACGGAGTT
20933791 CATTCCCAGTCTAA
192 CATTCCCAGTCTAA
20933805 G
1 G
20933806 ATCAGACTGG
Statistics
Matches: 181, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
204 1 0.01
205 78 0.43
206 98 0.54
207 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (205 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTACGGCAGCAGGACTAGTA
GCAGGATCAGTAGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTACATATTCTACCTCTCTGAC
CGGCCTCTCCGATCGACTGAGGACCCGTACGCTCATTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAA
Found at i:20933981 original size:157 final size:160
Alignment explanation
Indices: 20933766--20934123 Score: 433
Period size: 159 Copynumber: 2.3 Consensus size: 160
20933756 GTACGCTCGT
* * ** * *
20933766 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGATCGAGGGTTGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTGCA
* * * *
20933829 GCAGCAG-GA-TCGATAGCATGCAG-GG-GGACCGGGTTGATCCTCGGCTTGTACATTCTACCTC
65 GCAG-AGAGACT-GATAGCATGCAGAGGTGGACCGGGTCGATCCCCGACTTGCACATTCTACCTC
* * *
20933890 TCCGACCGGTTGAGCGCCTGCACGCCCGTTTCA
128 TCCGACCAGCTGAGCGCCCGCACGCCCGTTTCA
* * **
20933923 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCAGACCAAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCAG
* * *
20933987 TAGTGAGACTGGTAGCATGCAGAGGTGGACCGGGTCGATCCCCGACTTGCACATTCTACCTCTCC
66 CAGAGAGACTGATAGCATGCAGAGGTGGACCGGGTCGATCCCCGACTTGCACATTCTACCTCTCC
** *
20934052 GGTCAGCTGAGCGCCCGCACGCTCGTTTCA
131 GACCAGCTGAGCGCCCGCACGCCCGTTTCA
20934082 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
20934124 TACGGAGTTC
Statistics
Matches: 170, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
156 4 0.02
157 62 0.36
158 5 0.03
159 99 0.58
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (160 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCAG
CAGAGAGACTGATAGCATGCAGAGGTGGACCGGGTCGATCCCCGACTTGCACATTCTACCTCTCC
GACCAGCTGAGCGCCCGCACGCCCGTTTCA
Found at i:20934125 original size:26 final size:26
Alignment explanation
Indices: 20934095--20934147 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20934085 GTTGGCTTAG
20934095 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20934121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20934147 G
1 G
20934148 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20934855 original size:26 final size:26
Alignment explanation
Indices: 20934819--20934871 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20934809 GTTGACTTAG
20934819 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
20934845 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20934871 G
1 G
20934872 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20935348 original size:26 final size:26
Alignment explanation
Indices: 20935319--20935371 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20935309 GATGGCTTAG
*
20935319 GCATACGAAGTTCATTCCGAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* **
20935345 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20935371 G
1 G
20935372 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20935544 original size:26 final size:26
Alignment explanation
Indices: 20935515--20935567 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20935505 GTTGACTTAG
*
20935515 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
20935541 GCATACGGAGTTGATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20935567 G
1 G
20935568 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20935560 original size:196 final size:196
Alignment explanation
Indices: 20935216--20935573 Score: 486
Period size: 196 Copynumber: 1.8 Consensus size: 196
20935206 TTGCGACAGT
* * *
20935216 AGGATCGATAGCACGCAGGGGGTACCGGGCCAGTCCCCAGCTTGCGTATTCTGCCTTTTCGGCAA
1 AGGATCGATAGCACGCAGGGGGTACCGGGCCAATCCCCAGCTTGAGCATTCTGCCTTTTCGGCAA
* * *
20935281 GCTGAGCACCCGTACGCTCATTTCGTGGGATGGCTTAGGCATACGAAGTTCATTCCGAGTCTAAG
66 GCTGAGCACCCGTACGCTCATTTCGTGGGATGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
* * *
20935346 CATATGGTGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCAGCAG
131 CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCAGCAG
20935411 C
196 C
* ** * * **
20935412 AGGATCGATAGCATGCAGGAGGG-ACCGGGCCAATCTTCGGCTTGAGCATTCTTCCTTTTCGGTT
1 AGGATCGATAGCACGCAGG-GGGTACCGGGCCAATCCCCAGCTTGAGCATTCTGCCTTTTCGGCA
* * * * *
20935476 GGTTGAG-AGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
65 AGCTGAGCA-CCCGTACGCTCATTTCGTGGGATGACTTAGGCATACGAAGTTCATCCCCAGTCTA
*
20935540 AGCATACGGAGTTGATTCCCAATCTAAGATCAGA
129 AGCATACGGAGTTCATTCCCAATCTAAGATCAGA
20935574 TCAGACCGAG
Statistics
Matches: 138, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
195 1 0.01
196 134 0.97
197 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (196 bp):
AGGATCGATAGCACGCAGGGGGTACCGGGCCAATCCCCAGCTTGAGCATTCTGCCTTTTCGGCAA
GCTGAGCACCCGTACGCTCATTTCGTGGGATGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCAGCAG
C
Found at i:20935908 original size:26 final size:26
Alignment explanation
Indices: 20935858--20935910 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20935848 GTTGGCTTTG
* *
20935858 GCATACGTAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20935884 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
20935910 G
1 G
20935911 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20937922 original size:159 final size:159
Alignment explanation
Indices: 20937687--20938289 Score: 538
Period size: 159 Copynumber: 3.8 Consensus size: 159
20937677 GTAGCAATAT
* *
20937687 CGACAGCACGCA-AGGGGGATCGGGTCGATCCCCTGCTTGCCCATTCTGCCTCTCCGGCCGGCTT
1 CGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTACCCATTCTGCCTCTCCGGCCGGCTT
* ** * * * *
20937751 AGCGCCTGCACGCCCATTTTATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATTTCTATGCCCC
66 AGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
*
20937816 AGCTGGATCGAGGGTTGTGGCAGTGGGAC
131 AGCTGGACCGAGGGTTGTGGCAGTGGGAC
* * *
20937845 CGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGG-TT
1 CGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTACCCATTCTGCCTCTCCGGCCGGCTT
* *
20937909 GAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
66 -AGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* *
20937974 CAGCTGGACCGAGGGTTGTTGCCGTGGGAC
130 CAGCTGGACCGAGGGTTGTGGCAGTGGGAC
* * * * * * * ** * * * * * *
20938004 AGATAGCACACAGAGTGGGATCGGGTCGATCGCCGACTTGCGTAATATGCCTATCTGGCCAGCTC
1 CGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTACCCATTCTGCCTCTCCGGCCGGCTT
* * * * *
20938069 AGCGCCCGA-ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-A
66 AGCACCC-ACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCC
* * * ** *
20938131 TCAGATCGGACCGAGGGTTATGGCAGCAGGAT
129 CCAGCT-GGACCGAGGGTTGTGGCAGTGGGAC
* * ** * * * *
20938163 CGACGGCACACA-AGAGGGGA-CTGGGTC-AGTCCCTAGCTTGCGCATTCTGTCTCTCCGGCCGA
1 CGACAGCACGCAGAG-GGGGATC-GGGTCGA-TCCCCGGCTTACCCATTCTGCCTCTCCGGCCGG
* ** ** * * * * *
20938225 CTGAGTGCCTGCATGCTCATTTCATGGTTTGGCTTAGGCATACGGAGTTCATTCCATGGCTAAGC
63 CTTAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20938290 ATACGGAGTT
Statistics
Matches: 363, Mismatches: 70, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
158 25 0.07
159 333 0.92
160 5 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTACCCATTCTGCCTCTCCGGCCGGCTT
AGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AGCTGGACCGAGGGTTGTGGCAGTGGGAC
Found at i:20938656 original size:159 final size:156
Alignment explanation
Indices: 20938441--20938805 Score: 400
Period size: 157 Copynumber: 2.3 Consensus size: 156
20938431 CGCACGCCCG
** * * *
20938441 TTTCATGGGTTGGCTTAGGCATGGGGAGTTCATTCCATTTCTAAGCCCTAGTCGGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CATAGCCGGACCGAGGGTT
* *
20938506 GTGGCAGC-GAGA-CTGACAGCACGTAGAAAGGGATCGA-GCTGATCCCCGACTTGCGCATTATG
65 ATGGCAGCAG-GATC-GACAG-ACGTA-AAAGGGACCGAGGC-GATCCCCGACTTGCGCATTATG
**
20938568 CCTCTCCGGTCGGCTCAGCG-CCTGAACGCTCA
125 CCTCTCCGACCGGCTCAGCGACC-GAACGCTCA
* *
20938600 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAG-ATAGGACCGGACCTAGGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCATA-G-CCGGACCGAGGG
* ** * * * *
20938663 TTATGGCAGCAGGATCGATAGACGTAATGGGGACCGAGGCGGTCCCTGGCTTGCGCATTCTGCCT
63 TTATGGCAGCAGGATCGACAGACGTAAAAGGGACCGAGGCGATCCCCGACTTGCGCATTATGCCT
* * *
20938728 CTCCGACCGGCTGAGCGACCGTATGCTCA
128 CTCCGACCGGCTCAGCGACCGAACGCTCA
*
20938757 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
20938806 CGAAGTTCAT
Statistics
Matches: 174, Mismatches: 23, Indels: 19
0.81 0.11 0.09
Matches are distributed among these distances:
156 2 0.01
157 92 0.53
158 13 0.07
159 63 0.36
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAGCCGGACCGAGGGTTA
TGGCAGCAGGATCGACAGACGTAAAAGGGACCGAGGCGATCCCCGACTTGCGCATTATGCCTCTC
CGACCGGCTCAGCGACCGAACGCTCA
Found at i:20938812 original size:26 final size:26
Alignment explanation
Indices: 20938775--20938827 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20938765 GTTGGCTTAG
*
20938775 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCATTTCCA-GTCTAA
20938801 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
20938827 G
1 G
20938828 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:20939272 original size:26 final size:26
Alignment explanation
Indices: 20939243--20939295 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20939233 GTTGACTTAG
* *
20939243 GCATACGGAGTTTATCCCCACTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
20939269 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20939295 G
1 G
20939296 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20939622 original size:26 final size:26
Alignment explanation
Indices: 20939586--20939638 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20939576 GTTGGCTTAG
20939586 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20939612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20939638 G
1 G
20939639 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20940309 original size:12 final size:12
Alignment explanation
Indices: 20940292--20940316 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20940282 GCTGGGCTCG
20940292 AGAATTTGACTT
1 AGAATTTGACTT
20940304 AGAATTTGACTT
1 AGAATTTGACTT
20940316 A
1 A
20940317 AGCATACGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (12 bp):
AGAATTTGACTT
Found at i:20940653 original size:159 final size:159
Alignment explanation
Indices: 20940344--20940848 Score: 429
Period size: 159 Copynumber: 3.2 Consensus size: 159
20940334 CCTAGCCTAA
* * * * *
20940344 GCATGCGGAGTTCATTCCCA-GTCTAAG-A-TCAGATCGGACCGATGGTTACGACAACAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACT-AGACCGGACCGAGGGTTATGACAGCAGGATCG
** * * * * * * ** * *
20940406 ACAGTACGCAG-GGTGGATAGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCAACTGGCTGAG
64 ACAACACGCAGAGGGGGATCGAGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGGCTAGCTAAG
*
20940470 CGCCCGCACAG-TCGTTTCATGGGTTGGCTTAG
129 CGCCCGCAC-GCTCGTTT-TTGGGTTGGCTTAG
* * * * * *
20940502 GCATAGGGAGTTCATTCTATGTCTAAGCCCTAG-CCGGACCGAGGGTTGA-GGCAGCGGGATTGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACTAGACCGGACCGAGGGTT-ATGACAGCAGGATCGA
* * *
20940565 CAACACGCAGAGGGGGATCGAGCCAATCCTCGACTTGCGCATTATGCCTCTCCGGCTAGCTCAGT
65 CAACACGCAGAGGGGGATCGAGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGGCTAGCTAAGC
* * *
20940630 GCCCGAACGCTCATTTTGTGGGTTGACTTAG
130 GCCCGCACGCTCGTTTT-TGGGTTGGCTTAG
* * * *
20940661 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGATCGGACCGATGGTTATGATAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACTAGACCGGACCGAGGGTTATGACAGCAGGATCGA
* * * ** * * * *
20940724 CAGCACGCAGGGGGGGATCGGGCCGGTCC-CTAGCTTTCGCATTCTGCCTCTCTGG-TCAACTAA
65 CAACACGCAGAGGGGGATCGAGCCAATCCTCGA-CTTGCGCATTCTGCCTCTCCGGCT-AGCTAA
*
20940787 GCGCTCGCACGCTCGTTTCTTGGGTTGGCTTAG
128 GCGCCCGCACGCTCGTTT-TTGGGTTGGCTTAG
* *
20940820 GCATATGGAGTTTATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
20940849 TACGGAGTTC
Statistics
Matches: 276, Mismatches: 56, Indels: 28
0.77 0.16 0.08
Matches are distributed among these distances:
157 2 0.01
158 62 0.22
159 207 0.75
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACTAGACCGGACCGAGGGTTATGACAGCAGGATCGAC
AACACGCAGAGGGGGATCGAGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGGCTAGCTAAGCG
CCCGCACGCTCGTTTTTGGGTTGGCTTAG
Found at i:20940872 original size:26 final size:26
Alignment explanation
Indices: 20940820--20940872 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20940810 GTTGGCTTAG
* * *
20940820 GCATATGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
20940846 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
20940872 G
1 G
20940873 ATTGGACTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:20941053 original size:26 final size:26
Alignment explanation
Indices: 20941017--20941069 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20941007 GTTGACTTAG
20941017 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20941043 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20941069 G
1 G
20941070 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20941363 original size:159 final size:157
Alignment explanation
Indices: 20941196--20941602 Score: 388
Period size: 158 Copynumber: 2.6 Consensus size: 157
20941186 CGTGGGTTGG
* * *
20941196 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCGTAGCCGTATCGAGGGTTGTGGCAGTGGGAT
1 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCGCA-CCGGA-CGAGGGTTATGGCAGTGGGAT
* * **
20941261 CGACAGCACACAGAGGGGGACGGGGCCGATCCCCGGCTTT-CGCATTATGCCTCTCCGGCCGGTT
64 CGACAGCACGCAGAGGGGGACGGGGCCGATCCCCGG-TTTGCACATTATGCCTCTCCGGCCGACT
* * * *
20941325 CAGCGTCCAAATGCTCATTTCGTCGCTTGA
128 CAGCGGCCAAACGCCCATTTCATCGCTTGA
* * * * * * * **
20941355 CTTAGGCATACGAAATTCATTCCCA-GTCTAAGATCGGACTGGACTGAGGGTTACGACAGCAGGA
1 CTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-TCGCACCGGAC-GAGGGTTATGGCAGTGGGA
* * * * *
20941419 TCGACAGCACGTAG-GGGGGACCGGGCCGGTCCCCGGTTTGCACATTCTGCCTCTCTGGCCGACT
63 TCGACAGCACGCAGAGGGGGACGGGGCCGATCCCCGGTTTGCACATTATGCCTCTCCGGCCGACT
* * * * * * *
20941483 GAGTGGCCACACGCCCTTTTCATGGGTTGG
128 CAGCGGCCAAACGCCCATTTCATCGCTTGA
* * *
20941513 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGTGGGAC
1 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCGC-ACCGGA-CGAGGGTTATGGCAGTGGGAT
*
20941578 CAACAGCACGCAGAGGGGGATCGGG
64 CGACAGCACGCAGAGGGGGA-CGGG
20941603 CTAATCCTCG
Statistics
Matches: 193, Mismatches: 46, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
157 7 0.04
158 115 0.60
159 61 0.32
160 10 0.05
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCGCACCGGACGAGGGTTATGGCAGTGGGATCG
ACAGCACGCAGAGGGGGACGGGGCCGATCCCCGGTTTGCACATTATGCCTCTCCGGCCGACTCAG
CGGCCAAACGCCCATTTCATCGCTTGA
Found at i:20941532 original size:158 final size:157
Alignment explanation
Indices: 20941043--20941701 Score: 526
Period size: 159 Copynumber: 4.2 Consensus size: 157
20941033 CCCAGTCTAA
*
20941043 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCAGATCGAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACT-GGATCGAGGGTTGCGACAGCAGGATCGA
* * * * * * *
20941106 CAGCATGCAGGAGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCCAGCCTGCTGAGT-
64 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGCC-GCTGAGTG
* *
20941170 GCCTGCATG-TTTGTTTCGTGGGTTGGCTTAG
128 GCC-ACATGCTCT-TTTCGTGGGTTGGCTTAG
* * * * * * **
20941201 GCATAGGGAGTTCATTCCATGTCTAAG-TCGTAGCCGTATCGAGGGTTGTGGCAGTGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CTGGATCGAGGGTTGCGACAGCAGGATCGAC
* * * * * *
20941265 AGCACACAGAGGGGGACGGGGCCGATCCCCGGCTTT-CGCATTATGCCTCTCCGGCCGGTTCAGC
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCGG-TTTGCGCATTCTGCCTCTCCGGCC-GCTGAGT
* * * * * *
20941329 GTCCAAATGCTCATTTCGTCGCTTGACTTAG
127 GGCCACATGCTCTTTTCGTGGGTTGGCTTAG
* * *
20941360 GCATACGAAATTCATTCCCA-GTCTAAGATCGGACTGGA-CTGAGGGTTACGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACTGGATC-GAGGGTTGCGACAGCAGGATCGA
* * * *
20941423 CAGCACGTAGGGGGGACCGGGCCGGTCCCCGGTTTGCACATTCTGCCTCTCTGGCCGACTGAGTG
64 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGCCG-CTGAGTG
* * *
20941488 GCCACACGCCCTTTTCATGGGTTGGCTTAG
128 GCCACATGCTCTTTTCGTGGGTTGGCTTAG
* ** ** * * ** * ** * *
20941518 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGTGGGACCAACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACTGGATCGAGGGTTGCGACAGCAGGATCGACA
* ** * * * * * **
20941583 GCACGCAGAGGGGGATCGGGCTAATCCTCGATTTACGCATTCTACCTCTCCGGCCTACTGAG-CA
66 GCACGCAG-GGGGGACCGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGCC-GCTGAGTGG
* *
20941647 CCTGCATGCTCGTTTCGTGGGTTGGCTTAG
129 CC-ACATGCTCTTTTCGTGGGTTGGCTTAG
20941677 GCATACGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCATGTCTA
20941702 CGCATACGGA
Statistics
Matches: 389, Mismatches: 95, Indels: 33
0.75 0.18 0.06
Matches are distributed among these distances:
157 14 0.04
158 169 0.43
159 194 0.50
160 12 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACTGGATCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGCCGCTGAGTGGCC
ACATGCTCTTTTCGTGGGTTGGCTTAG
Found at i:20941633 original size:317 final size:317
Alignment explanation
Indices: 20941043--20941637 Score: 754
Period size: 317 Copynumber: 1.9 Consensus size: 317
20941033 CCCAGTCTAA
* * *
20941043 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGAAATTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGACAGCAGGATCGACA
* * **
20941108 GCATGCAGGAGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCCAGCCTGCTGAGTGCC
66 GCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCAGCCTGCTGAGTGCC
* * ** * * ** * *
20941173 TGCATGTTTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCGTAGCCGT
131 TACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
* * * * * *
20941238 ATCGAGGGTTGTGGCAGTGGGATCGACAGCACACAGAGGGGGACGGGGCCGATCCCCGGCTTTCG
196 ACCGAGGGTTATGGCAGTGGGACCAACAGCACACAGAGGGGGACGGGGCCAATCCCCGGATTTCG
*
20941303 CATTATGCCTCTCCGGCCGGTTCAGCGTCCAAATGCTCATTTCGTCGCTTGACTTAG
261 CATTATACCTCTCCGGCCGGTTCAGCGTCCAAATGCTCATTTCGTCGCTTGACTTAG
*
20941360 GCATACGAAATTCATTCCCAGTCTAAGATCGGA-CTGGA-CTGAGGGTTACGACAGCAGGATCGA
1 GCATACGAAATTCATTCCCAGTCTAAGATCGGATC-AGATC-GAGGGTTACGACAGCAGGATCGA
* * * * * **
20941423 CAGCACGTAGGGGGGACCGGGCCGGTCCCCGGTTTGCACATTCTGCCTCTCTGGCC-GACTGAGT
64 CAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCAGCCTG-CTGAGT
20941487 GGCC-ACACGCCCT-TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
128 -GCCTACACG-CCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * *
20941550 ACCGGACCGAGGGTTATGGCAGTGGGACCAACAGCACGCAGAGGGGGATC-GGGCTAATCCTC-G
191 ACCGGACCGAGGGTTATGGCAGTGGGACCAACAGCACACAGAGGGGGA-CGGGGCCAATCCCCGG
*
20941613 ATTTACGCATTCTACCTCTCCGGCC
255 ATTT-CGCATTATACCTCTCCGGCC
20941638 TACTGAGCAC
Statistics
Matches: 235, Mismatches: 36, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
316 7 0.03
317 223 0.95
318 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
GCATACGAAATTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGACAGCAGGATCGACA
GCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCAGCCTGCTGAGTGCC
TACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
ACCGAGGGTTATGGCAGTGGGACCAACAGCACACAGAGGGGGACGGGGCCAATCCCCGGATTTCG
CATTATACCTCTCCGGCCGGTTCAGCGTCCAAATGCTCATTTCGTCGCTTGACTTAG
Done.