Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 109 of 125
Found at i:20941747 original size:27 final size:26
Alignment explanation
Indices: 20941677--20941747 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
20941667 GTTGGCTTAG
20941677 GCATACGGAGTTCATTCCATGTCTAC
1 GCATACGGAGTTCATTCCATGTCTAC
20941703 GCATACGGAGTTCATTCCATGTCTAC
1 GCATACGGAGTTCATTCCATGTCTAC
*
20941729 GCATAAGGGAGTTCATTCC
1 GCAT-ACGGAGTTCATTCC
20941748 CAGCCTAAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
26 30 0.70
27 13 0.30
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAC
Found at i:20943313 original size:159 final size:158
Alignment explanation
Indices: 20943043--20943346 Score: 419
Period size: 159 Copynumber: 1.9 Consensus size: 158
20943033 GACCGAACCG
* * * * * *
20943043 AGGGTTGCGACAGCAGGATCGGCAACACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGTATTC
1 AGGGTTGCGACAGCAGGATCGACAACACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTC
* * ** *
20943108 TGCCTCTTCGGTCGGCTGAGTGCCCGCACGCCCGTTACGTGAGTTGGCTTAGGCATAGGGAGTTC
66 TGCCTCGTCGGCCGGCTGAACGCCCGCACGCCCGTTACGTGAGTTGGCTTAGGCATACGGAGTTC
20943173 ATTCCATGTCTAAGCCCTAGTTGGATCA
131 ATTCCATGTCTAAGCCCTAGTTGGATCA
* * * * *
20943201 AGGGTTGTGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATT
1 AGGGTTGCGACAGCAGGATCGACAACACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATT
* * * *
20943266 CTGCCTCGTCGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGATTT
65 CTGCCTCGTCGGCCGGCTGAACGCCCGCACGCCCGTTACGTGAGTTGGCTTAGGCATACGGAGTT
20943331 CATTCCATGTCTAAGC
130 CATTCCATGTCTAAGC
20943347 ATACAGAGTT
Statistics
Matches: 125, Mismatches: 20, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
158 26 0.21
159 99 0.79
ACGTcount: A:0.16, C:0.27, G:0.33, T:0.23
Consensus pattern (158 bp):
AGGGTTGCGACAGCAGGATCGACAACACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTC
TGCCTCGTCGGCCGGCTGAACGCCCGCACGCCCGTTACGTGAGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCTAGTTGGATCA
Found at i:20943348 original size:26 final size:26
Alignment explanation
Indices: 20943319--20943371 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20943309 GTTGGCTTAG
* *
20943319 GCATACGGATTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20943345 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20943371 G
1 G
20943372 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20946332 original size:26 final size:26
Alignment explanation
Indices: 20946302--20946354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20946292 GTTAACTTAG
20946302 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20946328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20946354 G
1 G
20946355 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20946641 original size:159 final size:158
Alignment explanation
Indices: 20946384--20946672 Score: 355
Period size: 159 Copynumber: 1.8 Consensus size: 158
20946374 TACGACAACA
* * * * * * *
20946384 GGATCGGCAGCACGCAAGGGGGACCGGGCCGGTCCTTGACTTGCACATTCTACCTCTCTGTCTGG
1 GGATCGGCAACACACAAGGGGGACCGAGCCGATCCCTGACTTGCACATTCTACCTCTCCGGCTGG
* * * *
20946449 CTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAG
66 CAGAGCGCCCGCACGCCCATTTCGTGGGATGGCTTAGACAT-GCGGAGTTCATTCCATGTCTAAG
20946513 CTCTAGCCAGATCGAGGGTTGTGGCAGTG
130 CTCTAGCCAGATCGAGGGTTGTGGCAGTG
** * *
20946542 GGATCGGCAACACACAGAGGGGGACCGAGCCGATCCCTGGTTTGCGCATTCTACCTTTCCGGCTG
1 GGATCGGCAACACACA-AGGGGGACCGAGCCGATCCCTGACTTGCACATTCTACCTCTCCGGCTG
** * * * * *
20946607 GCAGAGCGCCCGCTTGCTCGTTTGGTGGGATGGCTTCGACATGCGGGGTTCATTCCATGTCTAAG
65 GCAGAGCGCCCGCACGCCCATTTCGTGGGATGGCTTAGACATGCGGAGTTCATTCCATGTCTAAG
20946672 C
130 C
20946673 ATATGGAGTT
Statistics
Matches: 107, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 15 0.14
159 92 0.86
ACGTcount: A:0.16, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
GGATCGGCAACACACAAGGGGGACCGAGCCGATCCCTGACTTGCACATTCTACCTCTCCGGCTGG
CAGAGCGCCCGCACGCCCATTTCGTGGGATGGCTTAGACATGCGGAGTTCATTCCATGTCTAAGC
TCTAGCCAGATCGAGGGTTGTGGCAGTG
Found at i:20947136 original size:387 final size:387
Alignment explanation
Indices: 20946410--20947181 Score: 1204
Period size: 387 Copynumber: 2.0 Consensus size: 387
20946400 AGGGGGACCG
* * *
20946410 GGCCGGTCCTTGACTTGCACATTCTACCTCTCTGTCTGGCTGAGTGCCCGCACGCCCATTTCGTG
1 GGCCGGTCCTCGACTTGCACATTCTACCTCTCTGTCCGGCTGAGTGCCCGCACGCCCATTTCATG
* *
20946475 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCTAGCCAGATCGAGGGTTGTGGCAG
66 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAGCCAGATCGAAGGTTGTGGCAG
* * * ** * * *
20946540 TGGGATCGGCAACACACAGAGGGGGACCGAGCCGATCCCTGGTTTGCGCATTCTACCTTTCCGGC
131 TGGGACCGACAACACACAAAGGAAGACCGAACCGATCCCTGGCTTGCGCATTCTACCTCTCCGGC
* * * * * *
20946605 TGGCAGAGCGCCCGCTTGCTCGTTTGGTGGGATGGCTTCGACATGCGGGGTTCATTCCATGTCTA
196 TGGCAGAACACCCACTTGCTCGTTTGGTGGGATGGCTTCGACATACAGAGTTCATTCCATGTCTA
* *
20946670 AGCATATGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATGCTAGGCTCGGGCATA
261 AGCATATGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATACTAGGCTCGAGCATA
20946735 TGCTAGTACCGTATTTTTTTCGCTTGGGGCACCATCGGTGGAGCATCGTCGAAGCATCACCA
326 TGCTAGTACCGTATTTTTTTCGCTTGGGGCACCATCGGTGGAGCATCGTCGAAGCATCACCA
* *
20946797 GGCCGGTCCTCGACTTGCACATTCTGCCTCTCTGTCCGGCTGAGTGCCCGCACGCCCGTTTCATG
1 GGCCGGTCCTCGACTTGCACATTCTACCTCTCTGTCCGGCTGAGTGCCCGCACGCCCATTTCATG
*
20946862 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAGCCGGA-CAGAAGGTTGTGGCA
66 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAGCCAGATC-GAAGGTTGTGGCA
* * *
20946926 GTGGGACCGACAGCACGCAAAGGAAGACCGAACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGG
130 GTGGGACCGACAACACACAAAGGAAGACCGAACCGATCCCTGGCTTGCGCATTCTACCTCTCCGG
* * * * *
20946991 TTGGCTGAACACCCACTTGCTTGTTTGGTGGGATGGCTTCGGCATACAGAGTTCATTTCATGTCT
195 CTGGCAGAACACCCACTTGCTCGTTTGGTGGGATGGCTTCGACATACAGAGTTCATTCCATGTCT
*
20947056 AAGCATATGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATACTGGGCTCGAGCAT
260 AAGCATATGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATACTAGGCTCGAGCAT
* * *
20947121 GTGCTGGTGCCGTATTTTTTTCGCTTGGGGCACCATCGGTGGAGCATCGTCGAAGCATCAC
325 ATGCTAGTACCGTATTTTTTTCGCTTGGGGCACCATCGGTGGAGCATCGTCGAAGCATCAC
20947182 TGAAGAGCCT
Statistics
Matches: 348, Mismatches: 36, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
386 1 0.00
387 347 1.00
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.26
Consensus pattern (387 bp):
GGCCGGTCCTCGACTTGCACATTCTACCTCTCTGTCCGGCTGAGTGCCCGCACGCCCATTTCATG
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAGCCAGATCGAAGGTTGTGGCAG
TGGGACCGACAACACACAAAGGAAGACCGAACCGATCCCTGGCTTGCGCATTCTACCTCTCCGGC
TGGCAGAACACCCACTTGCTCGTTTGGTGGGATGGCTTCGACATACAGAGTTCATTCCATGTCTA
AGCATATGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATACTAGGCTCGAGCATA
TGCTAGTACCGTATTTTTTTCGCTTGGGGCACCATCGGTGGAGCATCGTCGAAGCATCACCA
Found at i:20947380 original size:26 final size:26
Alignment explanation
Indices: 20947350--20947402 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20947340 GTTGACTTAG
20947350 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
20947376 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20947402 G
1 G
20947403 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20947854 original size:158 final size:159
Alignment explanation
Indices: 20947505--20947880 Score: 413
Period size: 158 Copynumber: 2.4 Consensus size: 159
20947495 GGCTGAGCGT
* * * *
20947505 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCTA
1 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGCCA
* * * * *
20947570 GACTAAGGGTTGTGGTAGCAGGACCGGCAGCAAGTAGAGGGGGACCAGGCGGATCCTCGGCTTGC
66 GACCAAGGGTTGCGGTAGCAAGACCGACAGCAAGTAGAGGGGGACCAGGCGGATCCTCGACTTGC
* *
20947635 GCATTATGTCTCTCCGACCGGCTCAGCAC
131 GCATTATGCCTCTCCGACAGGCTCAGCAC
* * * * * *
20947664 CCGAATGCTCGTTCCATGGGTTGCCTTTGGCATACAGAGTTCATTCTCA-GTCTAAG-ATCAGAC
1 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCATCAG-C
* * ** * * *
20947727 CGGACCGAGGGTTGCGGTAGCAAGATTGATAGCACGTAGA-GGGGACC-GGATCGG-TGCTCGAC
64 CAGACCAAGGGTTGCGGTAGCAAGACCGACAGCAAGTAGAGGGGGACCAGG--CGGATCCTCGAC
* * *
20947789 TTGTGCATT-TAGCCTCTCCGACAGGTTGAGCAC
127 TTGCGCATTAT-GCCTCTCCGACAGGCTCAGCAC
*
20947822 CCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
1 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
20947881 ACGGAGTTCA
Statistics
Matches: 176, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
157 5 0.03
158 89 0.51
159 80 0.45
160 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGCCA
GACCAAGGGTTGCGGTAGCAAGACCGACAGCAAGTAGAGGGGGACCAGGCGGATCCTCGACTTGC
GCATTATGCCTCTCCGACAGGCTCAGCAC
Found at i:20947881 original size:26 final size:26
Alignment explanation
Indices: 20947851--20947903 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20947841 GTTGGCTTAG
20947851 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20947877 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20947903 G
1 G
20947904 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20948085 original size:26 final size:26
Alignment explanation
Indices: 20948056--20948108 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20948046 GTTGACTTAG
* *
20948056 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* *
20948082 GCATACAGAATTCTTTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
20948108 G
1 G
20948109 ATTGGATTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:20948370 original size:159 final size:158
Alignment explanation
Indices: 20948122--20948422 Score: 428
Period size: 159 Copynumber: 1.9 Consensus size: 158
20948112 GGATTGAATC
* *
20948122 GAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGAGGGACCGGGCTGGTCCCCGACTTGCCCATT
1 GAGGGTTGCGGCAGTAGGACCGACAGCACGCAGGAGGGACCGGGCTGATCCCCGACTTGCCCATT
* *
20948187 CTGCCTCTTCGACCGGCTGAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
66 CTGCCTCTCCGACCGGCTGAGCGCCCACACGCCCATTTAGTGGGTTGGCTTAGGCATACGGAGTT
20948252 CATTCCATGTCTCAGTCCTAGCCGGATT
131 CATTCCATGTCTCAGTCCTAGCCGGATT
* * * * * *
20948280 GAGGGTTGTGGCAGT-GAGACCGACAGCACGTAGAGGGGGATCGGG-TCGATCCCCGGCTTGCGC
1 GAGGGTTGCGGCAGTAG-GACCGACAGCACGCAG-GAGGGACCGGGCT-GATCCCCGACTTGCCC
* * *
20948343 ATTCTGCCTCTCC-AGTCGGCTGAGCGCCCGCACGCTCATTTAGTGGGTTGGCTTAGGCATACGG
63 ATTCTGCCTCTCCGA-CCGGCTGAGCGCCCACACGCCCATTTAGTGGGTTGGCTTAGGCATACGG
20948407 AGTTCATTCCATGTCT
127 AGTTCATTCCATGTCT
20948423 AAGCATATGG
Statistics
Matches: 126, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
157 1 0.01
158 30 0.24
159 95 0.75
ACGTcount: A:0.16, C:0.29, G:0.32, T:0.23
Consensus pattern (158 bp):
GAGGGTTGCGGCAGTAGGACCGACAGCACGCAGGAGGGACCGGGCTGATCCCCGACTTGCCCATT
CTGCCTCTCCGACCGGCTGAGCGCCCACACGCCCATTTAGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTCAGTCCTAGCCGGATT
Found at i:20948435 original size:26 final size:26
Alignment explanation
Indices: 20948399--20948451 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20948389 GTTGGCTTAG
20948399 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20948425 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20948451 G
1 G
20948452 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20949139 original size:26 final size:26
Alignment explanation
Indices: 20949103--20949155 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20949093 GTTGACTTAG
*
20949103 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
20949129 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20949155 G
1 G
20949156 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20949482 original size:26 final size:26
Alignment explanation
Indices: 20949446--20949498 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20949436 GTTGACTTAG
*
20949446 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCAGT-CCCAATCTAA
20949472 GCATACGGAGTTCAGTCCCAATCTAA
1 GCATACGGAGTTCAGTCCCAATCTAA
20949498 G
1 G
20949499 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAATCTAA
Found at i:20949635 original size:184 final size:183
Alignment explanation
Indices: 20949323--20950036 Score: 534
Period size: 184 Copynumber: 3.7 Consensus size: 183
20949313 GCCCCAGCCA
* * * * * * * *
20949323 GACCAAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGC
1 GACCGAGGGTTGTGACAGCAAGAACGATAGCACGCAG-GGGGGACAG-GCTGATCCCCGGCTTAC
* * * * * * * * * * *
20949388 GTAATATGCCTCTTCGA-CTGGCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATAC
64 GTATTCTACCTCTCCCATC-GGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* *
20949452 GGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAGTCCCAATCTAAGATTGGACTG
128 GGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTG
*
20949508 GACCGAGGGTTGTGACAGCAAGAACGATAGCACGCAGGGGGGATCAGGCTGGTCCCCGGCTTACG
1 GACCGAGGGTTGTGACAGCAAGAACGATAGCACGCAGGGGGGA-CAGGCTGATCCCCGGCTTACG
* ** *
20949573 TATTCTACCTCTCCCATCGGTTGAGCGCCCGCACGCTCGTCTCATGGGTTGGGTTAGGCATACAG
65 TATTCTACCTCTCCCATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * *
20949638 AGTTTAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACTA
130 AGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTG
* * * * *
20949692 GACCGAGGGTTGTGACAGTAGGACTAGCAGCAGGATTAGCAGCACGCAAGGGGGACCGGGTGATC
1 GACCGAGGGTTGTGAC---A-G-C-A--AGAACGA-T---AGCACGCAGGGGGGACAGGCTGATC
* * * * * *
20949757 CCCGGCTTACGCATTCTACCACTTTGATCGGCCTCTCCGGTCGACTGAGTGCCCACATGCTCGTT
54 CCCGGCTTACGTATTCTA-C-C--T-CTC--CC-AT-CGGT----TGAGCGCCCGCACGCTCGTT
* * *
20949822 TCATGGGTTGACTTAGGCATACGGAGTTCATCCTCAATCTAAGCATACAGAGTTCATTCCCAGTC
106 TCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
**
20949887 TAAGATCAGACTG
171 TAAGATTGGACTG
* ** * * * * * *** * *
20949900 GATCGAGGGTTGTGGTAGGAGGATCGGTAGCATGCAGGAAAGACCAGGCTGATCCCCGACTTGCG
1 GACCGAGGGTTGTGACAGCAAGAACGATAGCACGCAGGGGGGA-CAGGCTGATCCCCGGCTTACG
* * ** * *
20949965 TATTCTGCCTCTCCGATCGACTGAGCGCCTGCACG-TCCGTTTCATGGGTTGGCTTAGGCATACG
65 TATTCTACCTCTCCCATCGGTTGAGCGCCCGCACGCT-CGTTTCATGGGTTGACTTAGGCATACG
20950029 GAGTTCAT
129 GAGTTCAT
20950037 TCCATTTCTT
Statistics
Matches: 413, Mismatches: 85, Indels: 63
0.74 0.15 0.11
Matches are distributed among these distances:
183 4 0.01
184 173 0.42
185 35 0.08
187 1 0.00
188 3 0.01
189 2 0.00
190 2 0.00
192 7 0.02
193 2 0.00
195 25 0.06
196 26 0.06
197 23 0.06
199 2 0.00
200 4 0.01
202 3 0.01
203 1 0.00
204 5 0.01
205 1 0.00
208 92 0.22
209 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (183 bp):
GACCGAGGGTTGTGACAGCAAGAACGATAGCACGCAGGGGGGACAGGCTGATCCCCGGCTTACGT
ATTCTACCTCTCCCATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTG
Found at i:20951417 original size:26 final size:26
Alignment explanation
Indices: 20951388--20951440 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20951378 GTTGGCTTAG
20951388 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
20951414 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20951440 G
1 G
20951441 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20951626 original size:26 final size:26
Alignment explanation
Indices: 20951587--20951638 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20951577 TTGACATAGC
20951587 CATACGGAGGTCA-TCCCTAGTCTAAG
1 CATACGGAGGTCATTCCC-AGTCTAAG
* *
20951613 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGGTCATTCCCAGTCTAAG
20951639 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGGTCATTCCCAGTCTAAG
Found at i:20951960 original size:26 final size:26
Alignment explanation
Indices: 20951931--20951981 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20951921 TGAATTAGGT
20951931 ATACAGAGTTCACT-CCATGTCTAAGG
1 ATACAGAGTTCACTCCCA-GTCTAAGG
* *
20951957 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCACTCCCAGTCTAAG
20951982 ATCAAACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCACTCCCAGTCTAAGG
Found at i:20952260 original size:550 final size:541
Alignment explanation
Indices: 20951384--20952532 Score: 1349
Period size: 550 Copynumber: 2.1 Consensus size: 541
20951374 AGGGGTTGGC
* * *
20951384 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATT
1 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACT
** * * ** *
20951449 GGATCGAGGGTTGCGGTAGTAGGACCAATAGCAGGATCGGTAGCATGTAGGGGGTGATCGGGTCG
66 GGATCGAGGGTTGCGACAGCAGGACCAATAGCAGGATCGATAGCATCCAGGGGGTGATCGGATCG
*
20951514 ATCCCCGACTTGCGCATTCTGCCTCTCCAATCGGCCTCTCCAGCCCCACGCTTATTTCGTGTGTT
131 ATCCCCGACTTGCGCATTCTGCCTCTCCAATCGGCCTCTCCAGCCCCACGCTTATTTCATGTGTT
* * * * ** *
20951579 GACATAGCCATACGGAGGTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
196 GACATAGCCATACAGAGGTCATCCCCAATCGAAGCATACAGAGTTCATTCACAGTCTAAGATCAG
* * *
20951644 ACCGGACCGAGGGTTGCGACAGCAGGATCGACAGAACGTAGAGGGGACCGGGTTGATCCCCGGCT
261 ACCGGACCGAGGGTTACGACAGCAGGATCGACAGAACGTAGAGGGGACCGAGCTGATCCCCGGCT
** * ** * *
20951709 TGTGCATTTTACCTCTTTGGCCAGTTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCAT
326 TGCACATTCTACCTCTCCGACCAGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCAT
* *
20951774 AGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGTAGCGAGACC-AGTAGCA
391 AGGGAGTTCATTCCATGTCTAAACCCCAACCGAACCGAGGGTTGTGGTAGCGAGACCGA-CAGCA
* * ** *
20951838 TGCAGAAGGTGACTAGGTTGATCCCC-AGCTTACGAATTATGCCTCTCTGGCCGACTCAGCAATC
455 CGCAGAAGGGGACTAGGTCAATCCCCGA-CTTACGAATTATGCCTCTCCGGCCGACTCAGCAATC
20951902 GAACACTCATTTCATGGGTTGAA
519 GAACACTCATTTCATGGGTTGAA
* * *
20951925 TTAGGTATACAGAGTTCACTCCATGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCAAACT
1 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACT
* *
20951990 GGA-CTGAGGGTTGCGACAGCAGGGCCAATAGTAGGATCGATAGCA-CCAGGGGG-GATC-GATC
66 GGATC-GAGGGTTGCGACAGCAGGACCAATAGCAGGATCGATAGCATCCAGGGGGTGATCGGATC
* **
20952051 GATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCCTCTTCGGTCGGCTAAGCACCCGCACGCT
130 GATCCCCGACTTGCGCATTCTGCCTCTCCAATCGG-C-C-TC--TC--C--AG--CCC-CACGCT
* * * * *
20952116 TGTTTCATG-GATTGACTTAGGCATACAGAGTTTATCCCCAATCGAAGCATACAGAGTTCATTCA
183 TATTTCATGTG-TTGACATAGCCATACAGAGGTCATCCCCAATCGAAGCATACAGAGTTCATTCA
* * ** ** * *
20952180 CAGTCTAAGATCAGACTGGACTGAGGGTTACGGTAGCAGGATCGGTAGCACGTAGGGGGGACCGA
247 CAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGAACGTAGAGGGGACCGA
* * * * * *
20952245 GCTGATCCTCGGCTTGCACATTCTGCCTCTCCGACCTGCTGAGTGCCCGCACGCCCGTTTCGTGG
312 GCTGATCCCCGGCTTGCACATTCTACCTCTCCGACCAGCTGAGCGCCCGCACACCCATTTCGTGG
** * *
20952310 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCGGATCGAGGGTTGTGGTAGC
377 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCGAACCGAGGGTTGTGGTAGC
* * * * * * * *
20952375 GGGACCGACAGCACGTAGAGGGGGACTGGGTCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCT
442 GAGACCGACAGCACGCAGAAGGGGACTAGGTCAATCCCCGACTTACGAATTATGCCTCTCCGGCC
* * ** * * * **
20952440 GGCTGAGCTCTCGTACGCTCATTTCGTGGGTTGGC
507 GACTCAGCAATCGAACACTCATTTCATGGGTTGAA
*
20952475 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
20952533 GTTTGAGCCA
Statistics
Matches: 505, Mismatches: 87, Indels: 23
0.82 0.14 0.04
Matches are distributed among these distances:
538 35 0.07
539 5 0.01
540 8 0.02
541 98 0.19
543 2 0.00
545 1 0.00
547 2 0.00
549 4 0.01
550 348 0.69
551 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (541 bp):
TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACT
GGATCGAGGGTTGCGACAGCAGGACCAATAGCAGGATCGATAGCATCCAGGGGGTGATCGGATCG
ATCCCCGACTTGCGCATTCTGCCTCTCCAATCGGCCTCTCCAGCCCCACGCTTATTTCATGTGTT
GACATAGCCATACAGAGGTCATCCCCAATCGAAGCATACAGAGTTCATTCACAGTCTAAGATCAG
ACCGGACCGAGGGTTACGACAGCAGGATCGACAGAACGTAGAGGGGACCGAGCTGATCCCCGGCT
TGCACATTCTACCTCTCCGACCAGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAACCCCAACCGAACCGAGGGTTGTGGTAGCGAGACCGACAGCAC
GCAGAAGGGGACTAGGTCAATCCCCGACTTACGAATTATGCCTCTCCGGCCGACTCAGCAATCGA
ACACTCATTTCATGGGTTGAA
Found at i:20952508 original size:26 final size:26
Alignment explanation
Indices: 20952479--20952531 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20952469 GTTGGCTTAG
20952479 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20952505 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20952531 G
1 G
20952532 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20953047 original size:26 final size:26
Alignment explanation
Indices: 20953011--20953063 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20953001 GTTGACTTTG
20953011 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
20953037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
20953063 G
1 G
20953064 ATCAGACTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:20953384 original size:26 final size:26
Alignment explanation
Indices: 20953354--20953406 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20953344 GTTAGCTTAG
20953354 GCATACGAAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCATTTCCA-GTCTAA
*
20953380 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
20953406 G
1 G
20953407 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:20953916 original size:26 final size:26
Alignment explanation
Indices: 20953879--20953931 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20953869 GTTGGCTTAG
*
20953879 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20953905 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20953931 G
1 G
20953932 AATTTGAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20954227 original size:26 final size:26
Alignment explanation
Indices: 20954191--20954243 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20954181 GTTGACTTAG
20954191 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
20954217 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20954243 G
1 G
20954244 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20954684 original size:158 final size:154
Alignment explanation
Indices: 20954217--20954711 Score: 445
Period size: 159 Copynumber: 3.1 Consensus size: 154
20954207 CCTAGTCTAA
* * * * * *
20954217 GCATACGGAGTTTATTCCCAGTCTAAGATCGAACCAGACCGATGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATAG-A-CAGACAGAGGGTTGCGGTAGCAGGATCGACA
* ** * *
20954282 GCACGCA-GAGGGGATCAAGCCGATCCCCGACTTGCGCATTCTACCCTCTCCGACCGGCTAAGCG
63 GCACGCAGGA-GGGACCGGGCCGATCCCCG-CTTACGCATTCTA-CCTCTCCGATCGGCTAAGCG
* * *
20954346 CCCACATGCCCATTTCATGGGTTGGCTTAG
125 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * ** * * * *
20954376 GCATAGGGTGTTCATTCCATGTCTATGCCCTAGACAGATTGAGGGGTGTGGTAGCAGGACCGATA
1 GCATACGGAGTTCATTCCA-GTCTAAG--ATAGACAGACAGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
20954441 GCACGCAGAGGGGGACCGGGCCGATCCCCGGTTTACGTATTCTGCCTCTTCGATCGGCTCAA-CA
63 GCACGCAG-GAGGGACCGGGCCGATCCCC-GCTTACGCATTCTACCTCTCCGATCGGCT-AAGCG
** * * *
20954505 CTTGAACGCTCATTTCGTGGGTTGACTTAG
125 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
20954535 GCATACGGAGTTCATTCCTAGTCTAAGATTAGACTGGACAGAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCC-AGTCTAAGA-TAGAC-AGACAGAGGGTTGCGGTAGCAGGATCGACA
* * *
20954600 GCATGCAGGAGGGACCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCGCC
63 GCACGCAGGAGGGACCGGGCCGATCCCC-GCTTACGCATTCTACCTCTCCGATCGGCTAAGCGCC
*
20954665 CGCACGCTCGTTTCATGGGTTGGCTTAG
127 CGCACGCTCATTTCATGGGTTGGCTTAG
* *
20954693 GCATACGAAATTCATTCCA
1 GCATACGGAGTTCATTCCA
20954712 TGTGTAAGCA
Statistics
Matches: 261, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 92 0.35
159 135 0.52
160 28 0.11
161 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCAGTCTAAGATAGACAGACAGAGGGTTGCGGTAGCAGGATCGACAGCA
CGCAGGAGGGACCGGGCCGATCCCCGCTTACGCATTCTACCTCTCCGATCGGCTAAGCGCCCGCA
CGCTCATTTCATGGGTTGGCTTAG
Found at i:20954957 original size:26 final size:26
Alignment explanation
Indices: 20954890--20954958 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
20954880 GTTGACTTAG
*
20954890 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
20954916 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20954942 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
20954959 TCGAACCATA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20955228 original size:26 final size:26
Alignment explanation
Indices: 20955199--20955251 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20955189 GTTGACTTAG
* *
20955199 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGGCTAA
* *
20955225 GCATATAGAGTTCATTCCCAGGCTAA
1 GCATACAGAGTTCATCCCCAGGCTAA
20955251 G
1 G
20955252 ATTGGACTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGGCTAA
Found at i:20962659 original size:26 final size:26
Alignment explanation
Indices: 20962630--20962680 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20962620 TGACTTAGGC
20962630 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
20962656 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
20962681 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:20963135 original size:26 final size:26
Alignment explanation
Indices: 20963105--20963157 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20963095 GTTGGCTTAG
20963105 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
**
20963131 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
20963157 G
1 G
20963158 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:20963670 original size:26 final size:26
Alignment explanation
Indices: 20963640--20963692 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20963630 GCTGGCTTAG
20963640 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
20963666 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20963692 G
1 G
20963693 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20965758 original size:26 final size:26
Alignment explanation
Indices: 20965728--20965778 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20965718 TTGACCTAGG
20965728 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGTCTAAA
*
20965754 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
20965779 GATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAA
Found at i:20966107 original size:26 final size:26
Alignment explanation
Indices: 20966071--20966122 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20966061 TTTGCTTAGA
20966071 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
20966097 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
20966123 AGTTTGAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:20966212 original size:11 final size:11
Alignment explanation
Indices: 20966196--20966239 Score: 79
Period size: 11 Copynumber: 4.0 Consensus size: 11
20966186 GGGCACCATT
20966196 GTCAGAGCATC
1 GTCAGAGCATC
20966207 GTCAGAGCATC
1 GTCAGAGCATC
20966218 GTCAGAGCATC
1 GTCAGAGCATC
*
20966229 GTCGGAGCATC
1 GTCAGAGCATC
20966240 ACCGGAGAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.25, C:0.27, G:0.30, T:0.18
Consensus pattern (11 bp):
GTCAGAGCATC
Found at i:20967019 original size:26 final size:26
Alignment explanation
Indices: 20966983--20967035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20966973 GTTGGCTTAG
*
20966983 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
*
20967009 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
20967035 G
1 G
20967036 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:20967407 original size:159 final size:159
Alignment explanation
Indices: 20967092--20967512 Score: 434
Period size: 159 Copynumber: 2.6 Consensus size: 159
20967082 GAGGGTCCGA
* ** * * *
20967092 GCCAATCCCCGACTTGT-GCAATCTGCCTTTCCGACCGGCTGAGCGCCCGCATACCCGTTTTGTG
1 GCCAATCCCCGACTT-TCGCATTCTGCCTCCCCGACCAGCTGAGCGCCCGCACACCCGTTTCGTG
* * *
20967156 GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAACCCCAGCCAGATCGAGGGTTGTGGTAA
65 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAA
* * *** *
20967221 CGGGATTTGCAGCATGCTGAGGGGGACCGT
130 CGGGACTAGCAGCATGCTGAAAAGGACCGG
** * * * ** * *
20967251 GCTGATCCCCGACTTAT-GTATTCTGTCTCTCCGGGCAGCTGAGCACCCACACACCCGTTTCGTG
1 GCCAATCCCCGACTT-TCGCATTCTGCCTCCCCGACCAGCTGAGCGCCCGCACACCCGTTTCGTG
* * ** ** *
20967315 GGTTGGCTTAAGCATAGGGAGTTTGTTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAG
65 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAA
* *
20967380 TGGGACTAGTAGCATG-TAGAAAAGGACCGG
130 CGGGACTAGCAGCATGCT-GAAAAGGACCGG
* * * ** *
20967410 GCCAATCCCCGGCTTTCGCATTCTGCCTCCCCGACCGGCTGAGCGCCCGCACGCTTGTTTCATGG
1 GCCAATCCCCGACTTTCGCATTCTGCCTCCCCGACCAGCTGAGCGCCCGCACACCCGTTTCGTGG
*
20967475 GTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20967513 ATACGAAGTT
Statistics
Matches: 209, Mismatches: 51, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
158 2 0.01
159 207 0.99
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (159 bp):
GCCAATCCCCGACTTTCGCATTCTGCCTCCCCGACCAGCTGAGCGCCCGCACACCCGTTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAAC
GGGACTAGCAGCATGCTGAAAAGGACCGG
Found at i:20967515 original size:26 final size:26
Alignment explanation
Indices: 20967485--20967537 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20967475 GTTAGCTTAG
*
20967485 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
20967511 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20967537 G
1 G
20967538 AGTGTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20968049 original size:26 final size:26
Alignment explanation
Indices: 20968020--20968076 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
20968010 CGATCCCCGG
20968020 CTAAGCAGAC-GAAGTTCATCTCC-AGT
1 CTAAGCAGACAG-AGTTCAT-TCCTAGT
*
20968046 CTAAGCATACAGAGTTCATTCCTAGT
1 CTAAGCAGACAGAGTTCATTCCTAGT
20968072 CTAAG
1 CTAAG
20968077 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 3 0.11
26 24 0.86
27 1 0.04
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (26 bp):
CTAAGCAGACAGAGTTCATTCCTAGT
Found at i:20968553 original size:26 final size:26
Alignment explanation
Indices: 20968517--20968569 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20968507 GTTGGTTTAG
20968517 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20968543 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20968569 G
1 G
20968570 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20968747 original size:26 final size:26
Alignment explanation
Indices: 20968711--20968766 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20968701 TGGGTTGACT
*
20968711 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAATC
*
20968737 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATCCCCAATC
20968763 TAAG
1 TAAG
20968767 ATCAAACCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAATC
Found at i:20969929 original size:158 final size:159
Alignment explanation
Indices: 20969606--20969955 Score: 391
Period size: 158 Copynumber: 2.2 Consensus size: 159
20969596 CCCAGTCTAA
* * * * *
20969606 GCATAC-AGAGTTCATTCCTTGTCTAAGATCGGATCGGACAGAGGGTTGCGGCAGTGGGACTGGC
1 GCATACGA-AGTTCATTCCTAGTCTAAGATCGGATCAGACAGACGGTTGCGGCAGTAGGACTGAC
* * * * * * * *
20969670 AGCACGCAGAGGGGGACTGTGCTGATCCCCGGCTTGCGCATTATGCCTCCCCGATCGGCTCAGTG
65 AGCACGCAGAGGAGGACAGGGCCGATCCCCGGCTTGCACATTATGCCTCCCCGACCGGCTAACTG
** *
20969735 CCCGCACGCTTGTTCCGTGAGCTGACTTAG
130 CCCGCACGCTCCTTCCATGAGCTGACTTAG
* * *
20969765 GCATACGAAGTTCATTCCTAGTCTAAGATCGGATCAGACCGACGGTTGCGGTAGTAGGA-TCGAT
1 GCATACGAAGTTCATTCCTAGTCTAAGATCGGATCAGACAGACGGTTGCGGCAGTAGGACT-GAC
* * **
20969829 AGCACGCAG-GGAGGACAGGGCCGATCCTCGGCTTGCACATTCTGCCTCTTCGACCGGCTAACTG
65 AGCACGCAGAGGAGGACAGGGCCGATCCCCGGCTTGCACATTATGCCTCCCCGACCGGCTAACTG
* * * * *
20969893 CCCGTACGCTCCTTTCATGTGTTGGCTTAG
130 CCCGCACGCTCCTTCCATGAGCTGACTTAG
* *
20969923 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCGGA
20969956 CCGAACTGAG
Statistics
Matches: 159, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
158 97 0.61
159 61 0.38
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCTAGTCTAAGATCGGATCAGACAGACGGTTGCGGCAGTAGGACTGACA
GCACGCAGAGGAGGACAGGGCCGATCCCCGGCTTGCACATTATGCCTCCCCGACCGGCTAACTGC
CCGCACGCTCCTTCCATGAGCTGACTTAG
Found at i:20970134 original size:26 final size:26
Alignment explanation
Indices: 20970105--20970157 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20970095 GTTGACTTAG
20970105 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
20970131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20970157 G
1 G
20970158 ATCGGATCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20970439 original size:159 final size:158
Alignment explanation
Indices: 20970206--20970634 Score: 461
Period size: 159 Copynumber: 2.7 Consensus size: 158
20970196 GCACGCAAGG
*
20970206 GGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCC-ACACGCCC
1 GGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGACA--CTC
* * * * *
20970270 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTA-ACCGAAATGAGGG
64 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCGAAACGAAGG
* ***
20970334 TTATGGTAGCAGGACCGGTAGCACGTA-GAA
128 TTACGGTAGCAGGACCAACAGCACGTAGGAA
** * * * *
20970364 GGGGACTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGCACCCGATCACTC
1 -GGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGA-CACTC
* * ** * *
20970429 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGGACCGAAGG
64 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCGAAACGAAGG
* *
20970493 TTGCGGTAGCAGGATCAACAGCACGTAGGAA
128 TTACGGTAGCAGGACCAACAGCACGTAGGAA
* * * * * * *
20970524 GGGACCAGGTCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTTA
1 GGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCG-ACACTCA
* * *
20970589 TTTCGTGAGTTGGCTTAGGCATACAGTGTTCATTCCATGTCTAAGC
65 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20970635 ATACGAAGTT
Statistics
Matches: 220, Mismatches: 43, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
158 4 0.02
159 206 0.94
160 8 0.04
161 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
GGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGACACTCAT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCGAAACGAAGGTTA
CGGTAGCAGGACCAACAGCACGTAGGAA
Found at i:20970764 original size:183 final size:185
Alignment explanation
Indices: 20970448--20970817 Score: 451
Period size: 183 Copynumber: 2.0 Consensus size: 185
20970438 GTTGACTTAG
* * ** * *
20970448 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTGCGGTAGCAGGATCAACA
1 GCATACGAAGTTCATTCCCAATATAAGATCAGACCAAAACGAAGGTTGCGGCAGCAGGATCAACA
* * * *
20970513 GCACGTAGGAAGGGACCAGGTCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
66 GCACGCAGGAAGGGACCAGGTCGGTCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAACGC
* * *
20970578 CCGCACG-CTTATTTCGTGAGTTGGCTTAGGCATACAGTGTTCATTCCATGTCTAA
131 CCGCACGTC-CATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * * * *
20970633 GCATACGAAGTTTATTCCCAGTATAAGATCAGATCAAAACGAGGGTTGCGGCAGTAGGATCGATA
1 GCATACGAAGTTCATTCCCAATATAAGATCAGACCAAAACGAAGGTTGCGGCAGCAGGATCAACA
* * *
20970698 GCACGCA-GAGGGGATC-GGTCGGTCCCCGGCTTGCGCATTCTACCTCTCCGACC-AGCTGAACG
66 GCACGCAGGAAGGGACCAGGTCGGTCCCCAGCTTGCGCATTCTACCTCTCCGACCGA-CTGAACG
* * **
20970760 CCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCCGCACGTCCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
20970816 GC
1 GC
20970818 CCCAGTTGGA
Statistics
Matches: 156, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
182 1 0.01
183 89 0.57
184 8 0.05
185 58 0.37
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGAAGTTCATTCCCAATATAAGATCAGACCAAAACGAAGGTTGCGGCAGCAGGATCAACA
GCACGCAGGAAGGGACCAGGTCGGTCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAACGC
CCGCACGTCCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:20974814 original size:23 final size:23
Alignment explanation
Indices: 20974788--20974834 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
20974778 GAGGCCTTTA
20974788 AGGGATTAAAGAATGCTATTATG
1 AGGGATTAAAGAATGCTATTATG
*
20974811 AGGGATTGAAGAATGCTATTATG
1 AGGGATTAAAGAATGCTATTATG
20974834 A
1 A
20974835 AGGACCCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.04, G:0.28, T:0.30
Consensus pattern (23 bp):
AGGGATTAAAGAATGCTATTATG
Found at i:20978010 original size:26 final size:26
Alignment explanation
Indices: 20977960--20978012 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20977950 GTTGACTTAG
*
20977960 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
20977986 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20978012 G
1 G
20978013 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20978277 original size:159 final size:158
Alignment explanation
Indices: 20978023--20978330 Score: 460
Period size: 159 Copynumber: 1.9 Consensus size: 158
20978013 ATCAGACCAG
* *
20978023 ACCGAGGGTTACGGCAGTAGGATTGGCAGCATGCAGGGGGGATCGGGCCGATCCCCAGCTTGAGC
1 ACCGAGGGTTACGGCAGTAGGAATGGCAGCATGCAGGGGGGATCGGGCCGACCCCCAGCTTGAGC
**
20978088 ATTCTACCTCTCCGGCCGGCTGAGTGCCCGCACG-TCCATTTCATGGGTTGGCTTAGGCATAG-G
66 ATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCT-CATTTCATGGGTTGGCTTAGGCAT-GCG
20978151 GAGTTCATTCCATGTCTAAGCCCCAGCCAA
129 GAGTTCATTCCATGTCTAAGCCCCAGCCAA
** * * *
20978181 ACCGAGGGTTGTGGCAGTTGGAATGGTAGCATGCAGAGGGGGATCGGGCCGACCCCCGGCTTGCA
1 ACCGAGGGTTACGGCAGTAGGAATGGCAGCATGCAG-GGGGGATCGGGCCGACCCCCAGCTTG-A
* *
20978246 -CATTCTACCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATGCG
64 GCATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATGCG
20978310 GAGTTCATTCCATGTCTAAGC
129 GAGTTCATTCCATGTCTAAGC
20978331 ATACGGAGTT
Statistics
Matches: 135, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
158 32 0.24
159 101 0.75
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
ACCGAGGGTTACGGCAGTAGGAATGGCAGCATGCAGGGGGGATCGGGCCGACCCCCAGCTTGAGC
ATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATGCGGA
GTTCATTCCATGTCTAAGCCCCAGCCAA
Found at i:20978339 original size:26 final size:26
Alignment explanation
Indices: 20978303--20978355 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20978293 GTTGGCTTAG
*
20978303 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20978329 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20978355 G
1 G
20978356 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20979958 original size:26 final size:26
Alignment explanation
Indices: 20979928--20979980 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20979918 GTTGACTTAG
20979928 GCATACCAAGTTCATCCCCAGTCTAA
1 GCATACCAAGTTCATCCCCAGTCTAA
** *
20979954 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCAAGTTCATCCCCAGTCTAA
20979980 G
1 G
20979981 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACCAAGTTCATCCCCAGTCTAA
Found at i:20980328 original size:159 final size:159
Alignment explanation
Indices: 20980106--20980468 Score: 415
Period size: 159 Copynumber: 2.3 Consensus size: 159
20980096 CGCATGCCCA
* * * **
20980106 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCGGACTGAGGGTT
* ** **
20980171 GTGGTAGCGGGACCGATA-ACACGCAGAGGGGGATCGGGCCGATCCCTGACTTGCGCATTATCCC
66 GCGACAGCAAGACCGATAGAC-CGCAGAGGGGGATCGGGCCGATCCCTGACTTGCGCATTATCCC
*
20980235 TCTCCGGCCGACTCAGTGCCCAAACGCTCG
130 TCTCCGGCCGACTCAGCGCCCAAACGCTCG
* * * *
20980265 TTTCGTGGGATGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAAACCGGACTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAAACCGGACTGAGGGT
* * * * * * * *
20980329 TGCGACAGCAAGATCGATAGTCCGTAGGGGGGGATCGGGCCGGTCCCTGACTTGCGTATTCTGCC
65 TGCGACAGCAAGACCGATAGACCGCAGAGGGGGATCGGGCCGATCCCTGACTTGCGCATTATCCC
* ** * * ***
20980394 TCTCTGGCCGGTTGAGCGTCGGCACGCTCG
130 TCTCCGGCCGACTCAGCGCCCAAACGCTCG
20980424 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
20980469 TATACGGTGT
Statistics
Matches: 167, Mismatches: 34, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
158 3 0.02
159 160 0.96
160 4 0.02
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCGGACTGAGGGTT
GCGACAGCAAGACCGATAGACCGCAGAGGGGGATCGGGCCGATCCCTGACTTGCGCATTATCCCT
CTCCGGCCGACTCAGCGCCCAAACGCTCG
Found at i:20980480 original size:26 final size:26
Alignment explanation
Indices: 20980444--20980493 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20980434 TGGCTTAGGC
20980444 ATACGGAGTTCATTCCATGTCTAAGT
1 ATACGGAGTTCATTCCATGTCTAAGT
*
20980470 ATACGGTGTTCATTCCATGTCTAA
1 ATACGGAGTTCATTCCATGTCTAA
20980494 AATCAAATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGT
Found at i:20980674 original size:26 final size:26
Alignment explanation
Indices: 20980638--20980690 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20980628 GTTGACTTAG
20980638 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
20980664 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
20980690 G
1 G
20980691 GTCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:20981022 original size:26 final size:26
Alignment explanation
Indices: 20980986--20981035 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20980976 GGCTTAGGCA
20980986 TACGGAGTTCATTCC-ATGTCTAAGCC
1 TACGGAGTTCATTCCTA-GTCTAAGCC
20981012 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
20981036 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCC
Found at i:20981706 original size:26 final size:26
Alignment explanation
Indices: 20981669--20981721 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20981659 GTTGACTTGG
*
20981669 GCATACGGAGTTCAGCCCCAGTCTAA
1 GCATACGAAGTTCAGCCCCAGTCTAA
**
20981695 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAGCCCCAGTCTAA
20981721 G
1 G
20981722 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCAGCCCCAGTCTAA
Found at i:20982175 original size:158 final size:159
Alignment explanation
Indices: 20981835--20982196 Score: 412
Period size: 158 Copynumber: 2.3 Consensus size: 159
20981825 CGTTCGCCCG
* *
20981835 TTTCGTGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCCAGTCGGACCGAGGGT
1 TTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCCAGTCGGACCGAGGGT
* * * * * * *
20981899 TGTGGCAGCGGGATCGACAGCATGCATAGAGGGACCGGCCCGATCCTTGGCTTGCGCATTATGCC
65 TGCGGCAGCGGGATCGACAGAACGCAAAGAGGGACCGGCCCAATCCCTGGCTTGCCCATTATGCC
*
20981964 TCTCCGACTGGCTCAGCACCCACACGCTCG
130 TCTCCGACTGGCTCAGCACCCACACGCTCA
* * * * *
20981994 TTTCATGGATTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAGATCCGA-TCGGACTGAGGG
1 TTTCGTGG-TTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGACCCCAGTCGGACCGAGGG
* * * * * *
20982057 TTGCGGCAGTGGGATCGATAGAACGTAAAG-GGGACTGGGCCAATCCCTGGCTTGCCCATTCTGC
64 TTGCGGCAGCGGGATCGACAGAACGCAAAGAGGGACCGGCCCAATCCCTGGCTTGCCCATTATGC
* * *
20982121 CTCTCC-AGTTGGCT-AGGCGCCCGCACGCTCA
129 CTCTCCGA-CTGGCTCA-GCACCCACACGCTCA
20982152 TTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
20982197 CATATGGAGT
Statistics
Matches: 170, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
157 4 0.02
158 90 0.53
159 70 0.41
160 6 0.04
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
TTTCGTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCCAGTCGGACCGAGGGTT
GCGGCAGCGGGATCGACAGAACGCAAAGAGGGACCGGCCCAATCCCTGGCTTGCCCATTATGCCT
CTCCGACTGGCTCAGCACCCACACGCTCA
Found at i:20982206 original size:26 final size:25
Alignment explanation
Indices: 20982170--20982221 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20982160 GTTGGCTTAG
20982170 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
20982196 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
20982221 G
1 G
20982222 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:20982395 original size:26 final size:26
Alignment explanation
Indices: 20982364--20982415 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20982354 GTTGACTTAG
*
20982364 GCATACGGAGTTCA-TCCACAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
20982390 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20982416 AATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20982893 original size:26 final size:26
Alignment explanation
Indices: 20982863--20982915 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20982853 GTTGGCTTAG
* **
20982863 GCATATGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20982889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20982915 G
1 G
20982916 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20983442 original size:26 final size:26
Alignment explanation
Indices: 20983412--20983467 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
20983402 TGGGTTGGCT
*
20983412 TAAGCATACGGAGTTCATTCC-ATGTC
1 TAAGCATACGAAGTTCATTCCTA-GTC
20983438 TAAGCATACGAAGTTCATTCCTAGTC
1 TAAGCATACGAAGTTCATTCCTAGTC
20983464 TAAG
1 TAAG
20983468 AGTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCTAGTC
Found at i:20984177 original size:26 final size:26
Alignment explanation
Indices: 20984124--20984179 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
20984114 TGGGTTGACT
* *
20984124 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAATC
**
20984150 TAAGCATACGAAGTTCATTTCCAATC
1 TAAGCATACGAAGTTCATCCCCAATC
20984176 TAAG
1 TAAG
20984180 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAATC
Found at i:20984494 original size:26 final size:26
Alignment explanation
Indices: 20984458--20984510 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20984448 GTTGGCTTAG
20984458 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
20984484 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20984510 G
1 G
20984511 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20985253 original size:26 final size:26
Alignment explanation
Indices: 20985181--20985259 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
20985171 GTTGACTTAG
*
20985181 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20985207 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
20985233 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
20985259 G
1 G
20985260 ATCAGGTCGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:20985716 original size:158 final size:158
Alignment explanation
Indices: 20985233--20985734 Score: 514
Period size: 158 Copynumber: 3.2 Consensus size: 158
20985223 CCCAGTCTAA
* * *
20985233 GCATACAGAGTTCATTTCCA-GTCTAAGATCAGG-TCGAACCGAGGGTTGCGACAGCAGGATCAA
1 GCATACGGAGTTCA-TTCCATGTCTAAGAT-AGGACCGAACCGAGGGTTGCGACAGCAGGATCGA
* * * *
20985296 CAACACGCAGGGGAGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCC-GATCGACTGAGC
64 CAACACACAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAG-TCGACTGAGC
* * * *
20985360 GCCCGTACACCCATTTCGTGGGTTGGCTTAG
128 ACCCGAACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * * * *
20985391 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-G-CTGGACCGAGGGTTGTGGCATCGGGATCGA
1 GCATACGGAGTTCATTCCATGTCTAAG--ATAGGACCGAACCGAGGGTTGCGACAGCAGGATCGA
* * * * * * *
20985454 TAGCACACAGAGGGGGATCGGGTCGATCCCCGGCTTGCACATTATGCCTTTCCAGTCGGCTCAGC
64 CAACACACAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGC
* * *
20985519 TA-CCGAACGCTTATTTCATGGGTTGACTTAG
128 -ACCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * *
20985550 GCAAACGGAGTTCATTCCCA-GTCTAAGATTGGACCGAACTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATAGGACCGAACCGAGGGTTGCGACAGCAGGATCGAC
* * ** * *
20985614 AACACACAGGGGGGACCGGGTCGGTCCTTGGCTTACGCATTCTGCCTCTCCAGCCGACTGAGCAC
65 AACACACAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGCAC
* *
20985679 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGAACGCTCATTTCGTGGGTTGGCTTAG
20985708 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
20985735 CATACGGAGT
Statistics
Matches: 272, Mismatches: 61, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 9 0.03
158 139 0.51
159 120 0.44
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATAGGACCGAACCGAGGGTTGCGACAGCAGGATCGACA
ACACACAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGCACC
CGAACGCTCATTTCGTGGGTTGGCTTAG
Found at i:20985758 original size:26 final size:26
Alignment explanation
Indices: 20985708--20985760 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20985698 GTTGGCTTAG
*
20985708 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
20985734 GCATACGGAGTTCATTCTCA-ATCTAA
1 GCATACGGAGTTCATTC-CATATCTAA
20985760 G
1 G
20985761 ATCGGAACGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:20985943 original size:26 final size:26
Alignment explanation
Indices: 20985907--20985956 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20985897 GACTTAGGCA
20985907 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
*
20985933 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
20985957 ATCGGACCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:20986114 original size:184 final size:183
Alignment explanation
Indices: 20985554--20986115 Score: 528
Period size: 184 Copynumber: 3.0 Consensus size: 183
20985544 ACTTAGGCAA
* * * *
20985554 ACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGC-GACAGCAGGATCGACAACA
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACTGAGTGTTGCAGATAGCAGGATCGACAGCA
* * * * * * *
20985618 CACAGGGGGGACCGGGTCGGTCCTTGGCTTACGCATTCTGCCTC-TCCAGCCGACTGAGCACCCG
65 CGCA-GGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGAG-CGGCTGAGCGCCCG
20985682 CACG-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
128 CACGCCT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
* * * *
20985738 ACGGAGTTCATTCTCAATCTAAGATCGGAACGGACTGAGGGTTGTGGCAGCAGGACTAACAGCAG
1 ACGGAGTTCATTCCCAGTCTAAGATCGG-ACCGACTGA--G-TGT---TGCA-GA-T---AGCAG
** * * * * * * *
20985803 GATCGGTAGCATGCACGGGGGACTGGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGC
54 GATCGACAGCACGCA-GGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGAGCGGC
* * * * * *
20985868 TAAACGCCTGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
118 TGAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
*
20985932 GT
182 AT
20985934 ACGGAGTTCATTCCCAGTCTAAGATCGGACCCGA-TCGAGTGTTGCAG-TAGCAGGATCGACAGC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACT-GAGTGTTGCAGATAGCAGGATCGACAGC
* * *
20985997 ACGCAGGGAGGACCGGG-CTGAACCCTGGCTTGCGCATTCTACCTCTTCGA-CGGGCTGAGTGCC
64 ACGCAGGG-GGACCGGGTC-GATCCCTGGCTTGCGCATTCTGCCTCTTCGAGC-GGCTGAGCGCC
* * *
20986060 CGCACGCCTGTTTCGTGGTTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGC
126 CGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
20986116 CCCAGCCAGA
Statistics
Matches: 300, Mismatches: 56, Indels: 44
0.75 0.14 0.11
Matches are distributed among these distances:
183 7 0.02
184 133 0.44
185 3 0.01
186 1 0.00
187 3 0.01
189 1 0.00
190 5 0.02
192 2 0.01
193 3 0.01
194 1 0.00
195 2 0.01
196 133 0.44
197 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (183 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGACCGACTGAGTGTTGCAGATAGCAGGATCGACAGCAC
GCAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGAGCGGCTGAGCGCCCGCAC
GCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
Found at i:20986277 original size:26 final size:26
Alignment explanation
Indices: 20986247--20986298 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20986237 GTTGACTTAG
20986247 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
20986273 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20986299 AAGTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20987020 original size:26 final size:26
Alignment explanation
Indices: 20986968--20987020 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20986958 GTTGACTTAG
* *
20986968 GCATACGAAGTTCATCCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
20986994 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
20987020 G
1 G
20987021 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:20987300 original size:159 final size:159
Alignment explanation
Indices: 20987079--20987812 Score: 611
Period size: 159 Copynumber: 4.6 Consensus size: 159
20987069 GGGACTAGGT
* * * ** * * * *
20987079 CGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACCCGTACGCCCGTTTCGTGGGT
1 CGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
20987144 TGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACGG
66 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGG
* *
20987209 GACCGGCAGCACGTAGAGGGGGACCGGAT
131 GACCGGCAGCACGCAGAGGGGGACCGGAC
* * * * *
20987238 CGATCCCTAGCTTGCACATTATGCCTCTCCGGCCGACTCAGCGCTCGAACGCTCGTTTCGTGGGT
1 CGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* ** * ** * ***
20987303 TGACTTAGGCATACAGAGTTCATTCCCA-ATCTAAG-ATCAGACCGGACCAAGGGTTG-CAAAAG
66 TGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCAA-
** * * * * **
20987365 CAAGATCGACAGCACGCCG-GGGGGACTGGGT
128 CGGGACCGGCAGCACGCAGAGGGGGACCGGAC
* * * ** ** * * *
20987396 CGGTCCGTGACTTGCACATTCTGCCTCT-CGATCGGTTGAGCACCCGCACGTTCGTTTCATGGGT
1 CGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
20987460 TGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCATACCAAGGGTTGTGGCAGC-G
66 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGG
* *
20987524 GACCGGCAGGACGCAGAGGGGGATC-GAGC
131 GACCGGCAGCACGCAGAGGGGGACCGGA-C
* * * ** * * * * * * * * *
20987553 CGATCCCCGGATTACGTATTCTACCTATCTGGCCAACTGAGCGACCGCATGCCCATTTCATGGGT
1 CGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * * *
20987618 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTAGCGG
66 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGG
* * * * *
20987683 GACCGGCAGCAAGCAAAAGGGGACCAGCC
131 GACCGGCAGCACGCAGAGGGGGACCGGAC
** * * * *
20987712 CGATCCAC-GGCTTGTGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGATCGTTCCGTGGG
1 CGATCC-CTGGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
20987776 TTGGCTTAGGCATACGGAGTTCATTCCATTTCTAAGC
65 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20987813 ATACAGAGTT
Statistics
Matches: 439, Mismatches: 124, Indels: 24
0.75 0.21 0.04
Matches are distributed among these distances:
156 16 0.04
157 90 0.21
158 122 0.28
159 206 0.47
160 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
CGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGG
GACCGGCAGCACGCAGAGGGGGACCGGAC
Found at i:20987734 original size:316 final size:316
Alignment explanation
Indices: 20987079--20987812 Score: 733
Period size: 316 Copynumber: 2.3 Consensus size: 316
20987069 GGGACTAGGT
* * **
20987079 CGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACCCGTACGCCCGTTTCGTGGGT
1 CGATCCACGGCTTGCGCATTCTGCCTC-TCGATCGGCTGAGCACCCGCACGATCGTTTCGTGGGT
* *
20987144 TGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACGG
65 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGG
* * * * * * * *
20987209 GACCGGCAGCACGTAGAGGGGGACCGGATCGATCCCTAGCTTGCACATTATGCCTCTCCGGCCGA
130 GACCGGCAGCACGCAGAGGGGGACCGGACCGATCCCCAGATTACACATTATACCTATCCGGCCAA
* * *
20987274 CTCAGCGCTCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGA
195 CTCAGCGCTCGAACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGA
* * * * *** ** **
20987339 TCAGACCGGACCAAGGGTTGCAAAAGCAAGATCGACAGCACGCCGGGGGGACTGGGT
260 CCAGACCGGACCAAGGGTTACAAAAGCAAGACCGACAGCAAGCAAAGGGGACCAGCC
* ** * * * * *
20987396 CGGTCCGTGACTTGCACATTCTGCCTCTCGATCGGTTGAGCACCCGCACGTTCGTTTCATGGGTT
1 CGATCCACGGCTTGCGCATTCTGCCTCTCGATCGGCTGAGCACCCGCACGATCGTTTCGTGGGTT
* * *
20987461 GGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCATACCAAGGGTTGTGGCAGC-GG
66 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGGG
* * * ** * *
20987525 ACCGGCAGGACGCAGAGGGGGATC-GAGCCGATCCCCGGATTACGTATTCTACCTATCTGGCCAA
131 ACCGGCAGCACGCAGAGGGGGACCGGA-CCGATCCCCAGATTACACATTATACCTATCCGGCCAA
* * * * ** *
20987589 CTGAGCGAC-CGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAA
195 CTCAGCG-CTCGAACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-ATCTAA
* * * **** ** *
20987652 GCCCCAG-TCGGACCGAGGGTTATGGTAGCGGGACCGGCAGCAAGCAAAAGGGGACCAGCC
258 G-ACCAGACCGGACCAAGGGTTACAAAAGCAAGACCGACAGCAAGC-AAAGGGGACCAGCC
* * * *
20987712 CGATCCACGGCTTGTGCATTCTGCCTCTCCG-GCTGGCTGAGCGCCCGCACGATCGTTCCGTGGG
1 CGATCCACGGCTTGCGCATTCTGCCTCT-CGATC-GGCTGAGCACCCGCACGATCGTTTCGTGGG
* *
20987776 TTGGCTTAGGCATACGGAGTTCATTCCATTTCTAAGC
64 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
20987813 ATACAGAGTT
Statistics
Matches: 334, Mismatches: 76, Indels: 14
0.79 0.18 0.03
Matches are distributed among these distances:
314 5 0.01
315 122 0.37
316 124 0.37
317 83 0.25
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (316 bp):
CGATCCACGGCTTGCGCATTCTGCCTCTCGATCGGCTGAGCACCCGCACGATCGTTTCGTGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGGG
ACCGGCAGCACGCAGAGGGGGACCGGACCGATCCCCAGATTACACATTATACCTATCCGGCCAAC
TCAGCGCTCGAACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGAC
CAGACCGGACCAAGGGTTACAAAAGCAAGACCGACAGCAAGCAAAGGGGACCAGCC
Found at i:20987835 original size:26 final size:26
Alignment explanation
Indices: 20987785--20987836 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20987775 GTTGGCTTAG
* *
20987785 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
20987811 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
20987837 AAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:20988533 original size:26 final size:25
Alignment explanation
Indices: 20988498--20988549 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
20988488 GTTGACTTAG
20988498 GCATCGGAGTTCA-TCCCAAGTCTAA
1 GCATCGGAGTTCATTCCC-AGTCTAA
20988523 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCAT-CGGAGTTCATTCCCAGTCTAA
20988549 G
1 G
20988550 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 4 0.16
26 17 0.68
27 4 0.16
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (25 bp):
GCATCGGAGTTCATTCCCAGTCTAA
Found at i:20988767 original size:186 final size:186
Alignment explanation
Indices: 20988427--20988767 Score: 454
Period size: 186 Copynumber: 1.8 Consensus size: 186
20988417 ACCCGTTCGA
* * * * * *
20988427 TCCCCAGCTTACGCATCTTGCCTCTCTGGGTCGACTGAGCGTCAGCATGCTCGTTTCGTGGGTTG
1 TCCCCAACTTACGCATCTTACCTCTCTGGGCCGACTGAGCGCCAGCACGCTCGTTTAGTGGGTTG
* * **
20988492 ACTTAGGCATCGGAGTTCATCCCAAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATTGGAC
66 ACTTAGGCATCGGAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
* * *
20988557 CAGACTGAGGGTTGCGACAGCAGGATCGATGGCACGCAGGGGGAGGATCAGTCCAG
131 CAAACTAAGGGTTACGACAGCAGGATCGATGGCACGCAGGGGGAGGATCAGTCCAG
* *
20988613 TCCCCAACTTACGCAT-TCTACCTCTCT-GGCCGACTGAGTGCCCGCACGCTCGTTTAGTGGGTT
1 TCCCCAACTTACGCATCT-TACCTCTCTGGGCCGACTGAGCGCCAGCACGCTCGTTTAGTGGGTT
* * *
20988676 GACTTAGGCATACGGAGTTCATTCCATGTCTCAGCATACGAAGTTCATTCCCAGTCTAAGATCAG
65 GACTTAGGCAT-CGGAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG
* *
20988741 ACCAAA-TCAAGTGTTACGATAGCAGGA
129 ACCAAACT-AAGGGTTACGACAGCAGGA
20988768 CCAGCAGTAG
Statistics
Matches: 132, Mismatches: 20, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
185 43 0.33
186 89 0.67
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (186 bp):
TCCCCAACTTACGCATCTTACCTCTCTGGGCCGACTGAGCGCCAGCACGCTCGTTTAGTGGGTTG
ACTTAGGCATCGGAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
CAAACTAAGGGTTACGACAGCAGGATCGATGGCACGCAGGGGGAGGATCAGTCCAG
Found at i:20989236 original size:26 final size:26
Alignment explanation
Indices: 20989207--20989259 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20989197 GTTGACTTAG
20989207 GCATACGGAGTTCA-TCTGCAGTCTAA
1 GCATACGGAGTTCATTCT-CAGTCTAA
20989233 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
20989259 G
1 G
20989260 ATCGTATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:20989409 original size:355 final size:344
Alignment explanation
Indices: 20988959--20989606 Score: 786
Period size: 355 Copynumber: 1.9 Consensus size: 344
20988949 GAGGAGGATC
* * * *
20988959 GGGTCGATCCCTGACTTACGCATTCTGCCTCTTCGACCGGTTGAGCACCCGCACGCTCGTTTCGT
1 GGGTCGATCCCCGACTTACGCATTCTACCTCTTCGACCGGCTGAGCACCCGCACGCCCGTTTCGT
*
20989024 GGGTTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG-TCGGA-CAGAAGGTTGTGG
66 GGGTTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCT-AGATC-GAAGGTTGTGG
* * * * * *
20989087 CAGC-AGGACCGGTAGTGGGATCGGTAGCACGTAGAGGGGGATCGAGCTGATCCCCGGCTTATGT
129 CAGCGA-GACCGGCA---GCA-C-GTA--A---AG-GGGGGATCGAGCCGATCCCCGACTTACGC
* * *
20989151 ATTATGCCTCTCCGGCCGACTGAACGCCCGCATGATCGTTTCGTGGGTTGACTTAGGCATACGGA
182 ATTATGCCTCTCCGACCGACTGAACGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACAGA
*
20989216 GTTCATCTGCA-GTCTAAGCATACGGAGTTCATT-CTCAGTCTAAGATCGTATCGGATCGAGGGT
247 GTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCT-AGTCTAAGATCGTATCGGATCGAGGGT
20989279 TACGGTAGTAGGATCGATAGCACACAGGGGGGACA
310 TACGGTAGTAGGATCGATAGCACACAGGGGGGACA
* * ** * *
20989314 GGGTCGATCCCCGGCTTGCGCATTCTACCTC-TCTGATTGGCTGAGCGCCCGCACGCCCGTTTTG
1 GGGTCGATCCCCGACTTACGCATTCTACCTCTTC-GACCGGCTGAGCACCCGCACGCCCGTTTCG
* ** *
20989378 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGATCGAGGGTTGTGGC
65 TGGGTTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCTAGATCGAAGGTTGTGGC
* *
20989443 AGCGAGACCGGCAGCACGTAAAGGGGGGATCGGGCCGATCCCCGACTTACGCATTTTGCCTCTCC
130 AGCGAGACCGGCAGCACGTAAAGGGGGGATCGAGCCGATCCCCGACTTACGCATTATGCCTCTCC
* ** * * * * *
20989508 GACCGATTGAGGGCCCGTACGCTTGTTTCGTGGGTTGGCTTAGGCATCCAGAGTTCATTCCATGT
195 GACCGACTGAACGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGT
20989573 CTAAGCATACGGAGTTCATTCCTAGTCTAAGATC
260 CTAAGCATACGGAGTTCATTCCTAGTCTAAGATC
20989607 AGACCAGACC
Statistics
Matches: 252, Mismatches: 35, Indels: 23
0.81 0.11 0.07
Matches are distributed among these distances:
343 3 0.01
344 116 0.46
345 4 0.02
348 1 0.00
350 3 0.01
351 1 0.00
352 2 0.01
354 2 0.01
355 117 0.46
356 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (344 bp):
GGGTCGATCCCCGACTTACGCATTCTACCTCTTCGACCGGCTGAGCACCCGCACGCCCGTTTCGT
GGGTTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCTAGATCGAAGGTTGTGGCA
GCGAGACCGGCAGCACGTAAAGGGGGGATCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCG
ACCGACTGAACGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTC
TAAGCATACGGAGTTCATTCCTAGTCTAAGATCGTATCGGATCGAGGGTTACGGTAGTAGGATCG
ATAGCACACAGGGGGGACA
Found at i:20989602 original size:344 final size:350
Alignment explanation
Indices: 20988959--20989606 Score: 798
Period size: 344 Copynumber: 1.9 Consensus size: 350
20988949 GAGGAGGATC
* * * *
20988959 GGGTCGATCCCTGACTTACGCATTCTGCCTCTTCGACCGGTTGAGCACCCGCACGCTCGTTTCGT
1 GGGTCGATCCCCGACTTACGCATTCTACCTCTTCGACCGGCTGAGCACCCGCACGCCCGTTTCGT
*
20989024 GGGTTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAAGGTTGTGGCA
66 GGGTTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACAGAAGGTTGTGGCA
* * * * * *
20989089 GCAGGACCGGTAGTGGGATCGGTAGCACGTAGAGGGGGATCGAGCTGATCCCCGGCTTATGTATT
131 GCAGGACCGGCA--GGCATCGGTA-CAC--AGAGGGGGATCGAGCCGATCCCCGACTTACGCATT
* * *
20989154 ATGCCTCTCCGGCCGACTGAACGCCCGCATGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
191 ATGCCTCTCCGACCGACTGAACGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
*
20989219 CATCTGCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGTATCGGATCGAGGGTTACGG
256 CATCTCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGTATCGGATCGAGGGTTACGG
20989284 TAGTAGGATCGATAGCACACAGGGGGGACA
321 TAGTAGGATCGATAGCACACAGGGGGGACA
* * ** * *
20989314 GGGTCGATCCCCGGCTTGCGCATTCTACCTC-TCTGATTGGCTGAGCGCCCGCACGCCCGTTTTG
1 GGGTCGATCCCCGACTTACGCATTCTACCTCTTC-GACCGGCTGAGCACCCGCACGCCCGTTTCG
* ** *
20989378 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGATC-GAGGGTTGTG
65 TGGGTTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTC-AGA-CAGAAGGTTGTG
* *
20989441 GCAGC-GAGACCGGCA-GCA-C-GTA-A-AG-GGGGGATCGGGCCGATCCCCGACTTACGCATTT
128 GCAGCAG-GACCGGCAGGCATCGGTACACAGAGGGGGATCGAGCCGATCCCCGACTTACGCATTA
* ** * * * * *
20989499 TGCCTCTCCGACCGATTGAGGGCCCGTACGCTTGTTTCGTGGGTTGGCTTAGGCATCCAGAGTTC
192 TGCCTCTCCGACCGACTGAACGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
20989564 AT-TCCATGTCTAAGCATACGGAGTTCATTC-CTAGTCTAAGATC
257 ATCTCCA-GTCTAAGCATACGGAGTTCATTCTC-AGTCTAAGATC
20989607 AGACCAGACC
Statistics
Matches: 252, Mismatches: 35, Indels: 23
0.81 0.11 0.07
Matches are distributed among these distances:
343 4 0.02
344 117 0.46
345 2 0.01
348 1 0.00
350 3 0.01
351 1 0.00
352 2 0.01
354 4 0.02
355 117 0.46
356 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (350 bp):
GGGTCGATCCCCGACTTACGCATTCTACCTCTTCGACCGGCTGAGCACCCGCACGCCCGTTTCGT
GGGTTGGCATAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACAGAAGGTTGTGGCA
GCAGGACCGGCAGGCATCGGTACACAGAGGGGGATCGAGCCGATCCCCGACTTACGCATTATGCC
TCTCCGACCGACTGAACGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCT
CCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGTATCGGATCGAGGGTTACGGTAGTA
GGATCGATAGCACACAGGGGGGACA
Found at i:20989948 original size:26 final size:26
Alignment explanation
Indices: 20989899--20989951 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20989889 GTTGGCTTAG
*
20989899 GCATACCGAGTTCATTCTATGTCTAA
1 GCATACCGAGTTCATTCCATGTCTAA
*
20989925 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACCGAGTTCATT-CCATGTCTAA
20989951 G
1 G
20989952 AGTTTGAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCATGTCTAA
Found at i:20990803 original size:26 final size:26
Alignment explanation
Indices: 20990773--20990825 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20990763 GTTGACTTAG
20990773 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
20990799 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20990825 G
1 G
20990826 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:20992348 original size:159 final size:157
Alignment explanation
Indices: 20992007--20992375 Score: 393
Period size: 159 Copynumber: 2.3 Consensus size: 157
20991997 GAGCATCCGT
* * *
20992007 ACGCTCATTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACTGGAC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACTGGAC
* * * * * ***
20992071 CAAGGGTTAAGACAGCAGGATCAGCAGCACGCATGGGGGACCAACCGATCTTTGGCTTGCACATT
65 CAAAGGTTAAGACAGCAGGACCAGCAGCACACAAGGGGGACCAACCAATCCCCGGCTTGCACATT
* * * *
20992136 TTACCTCTCCGGCCGACTGAGCGCCCGC
130 ATACCTCTCCGACCGACTCAGCGCCCGA
* * * * *
20992164 ACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGAC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGACTGGAC
** * * * *
20992228 CAAAGGTTGTGGCAGCGGGACCGGCAGCACACAAAGGGGGACCGAGCCAATCCCCGGCTTGCACA
65 CAAAGGTTAAGACAGCAGGACCAGCAGCACAC-AAGGGGGACC-AACCAATCCCCGGCTTGCACA
* * * *
20992293 TTATGCCTCTCCGATCGGCTCAGTGCCCGA
128 TTATACCTCTCCGACCGACTCAGCGCCCGA
*
20992323 ACGCTCATTTCATGGGTTGACTTAGGCAAACGGAGTTCATTCC-TAGTCTAAGA
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGA
20992376 TTAGATCGAA
Statistics
Matches: 171, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
156 3 0.02
157 73 0.43
158 12 0.07
159 83 0.49
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (157 bp):
ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACTGGACC
AAAGGTTAAGACAGCAGGACCAGCAGCACACAAGGGGGACCAACCAATCCCCGGCTTGCACATTA
TACCTCTCCGACCGACTCAGCGCCCGA
Found at i:20992707 original size:26 final size:26
Alignment explanation
Indices: 20992667--20992724 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
20992657 CATGGGTTGA
*
20992667 CTAAGGCATACGGAGTTCATCTCCAGT
1 CTAA-GCATACGGAGATCATCTCCAGT
*
20992694 CTAAGCATACGGAGATCATTTCCAGT
1 CTAAGCATACGGAGATCATCTCCAGT
20992720 CTAAG
1 CTAAG
20992725 ATCGGACCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGATCATCTCCAGT
Found at i:20993560 original size:26 final size:26
Alignment explanation
Indices: 20993530--20993582 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20993520 GTTGGCTTAG
20993530 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
20993556 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
20993582 G
1 G
20993583 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:20993671 original size:11 final size:11
Alignment explanation
Indices: 20993655--20993680 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
20993645 GAGGCACCAC
20993655 CGTCGGAGCAT
1 CGTCGGAGCAT
20993666 CGTCGGAGCAT
1 CGTCGGAGCAT
20993677 CGTC
1 CGTC
20993681 AGAGAGCCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (11 bp):
CGTCGGAGCAT
Found at i:20994302 original size:26 final size:26
Alignment explanation
Indices: 20994252--20994304 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20994242 GTTGACTTAG
**
20994252 GCATATGGAGTTCATCCCTGGTCTAA
1 GCATATGGAGTTCATCCCTAATCTAA
20994278 GCATATGGAGTTCATTCCC-AATCTAA
1 GCATATGGAGTTCA-TCCCTAATCTAA
20994304 G
1 G
20994305 ATTGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCTAATCTAA
Found at i:20994805 original size:26 final size:26
Alignment explanation
Indices: 20994753--20994805 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20994743 GTTGGCTTAG
* *
20994753 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
20994779 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
20994805 G
1 G
20994806 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:20995046 original size:197 final size:197
Alignment explanation
Indices: 20994703--20995094 Score: 527
Period size: 197 Copynumber: 2.0 Consensus size: 197
20994693 GCGTATTCTA
* * * *
20994703 CCTCTCTGATCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCTGATCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCAT
* * * *
20994768 TCCATGTTTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAAGGTTGTGACAG
66 CCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAAGGTTGCGACAG
** * * ** ** * *
20994833 CAGGATCGGTAGCACGCAGGGGGGATCGGGTTGATCCCTGGCTTGTGTATTCTGCCTCTCCGGTC
131 CAGGATCGACAGCACGCAGGGAGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC
20994898 AT
196 AT
* *
20994900 CCTCTCTGGTCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCAT
1 CCTCTCTGATCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCAT
* * *
20994965 CCGCA-GTCTAAGCATATGGAGTTCATTTCCAGTCTAAGATTGGACCAGACC-AAGGGTTGCGAC
66 CC-CATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAA-GGTTGCGAC
* *
20995028 AGTAGGATCGACAGCACGCAGGGAGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGG
129 AGCAGGATCGACAGCACGCAGGGAGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGG
20995093 TC
194 TC
20995095 GGTTGAGCAC
Statistics
Matches: 168, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
196 2 0.01
197 164 0.98
198 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (197 bp):
CCTCTCTGATCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCAT
CCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAAGGTTGCGACAG
CAGGATCGACAGCACGCAGGGAGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC
AT
Found at i:20995355 original size:24 final size:24
Alignment explanation
Indices: 20995310--20995355 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
20995300 AGTTCATTCC
*
20995310 TAGCAGGACCAGAAGCATGATCGA
1 TAGCAGGACCAGAAGCAGGATCGA
* *
20995334 TAGCAGGACCAGTAGTAGGATC
1 TAGCAGGACCAGAAGCAGGATC
20995356 CCCGGCTTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.20, G:0.30, T:0.15
Consensus pattern (24 bp):
TAGCAGGACCAGAAGCAGGATCGA
Found at i:20995464 original size:26 final size:26
Alignment explanation
Indices: 20995434--20995489 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
20995424 TTTGTTGACT
*
20995434 TAAGCAAACAGAGTTCATCCCCAGTC
1 TAAGCAAACAGAGTTCATCACCAGTC
* * *
20995460 TAAGCATACGGAGTTCATTACCAGTC
1 TAAGCAAACAGAGTTCATCACCAGTC
20995486 TAAG
1 TAAG
20995490 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCAAACAGAGTTCATCACCAGTC
Found at i:20995816 original size:26 final size:26
Alignment explanation
Indices: 20995780--20995832 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20995770 GTTGGCTTAG
20995780 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
20995806 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
20995832 G
1 G
20995833 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:21000195 original size:26 final size:26
Alignment explanation
Indices: 21000165--21000217 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21000155 GTTGGCTTAG
21000165 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21000191 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21000217 G
1 G
21000218 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21000911 original size:26 final size:26
Alignment explanation
Indices: 21000875--21000925 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21000865 GTTGACTCAG
*
21000875 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21000901 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
21000926 TGATTGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21001088 original size:26 final size:26
Alignment explanation
Indices: 21001059--21001111 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21001049 GTTGACTTAG
* *
21001059 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21001085 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21001111 G
1 G
21001112 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21001297 original size:196 final size:196
Alignment explanation
Indices: 21000956--21001317 Score: 492
Period size: 196 Copynumber: 1.8 Consensus size: 196
21000946 TTGCGGTAGT
* * *
21000956 AGGATCGATAGCACGTAAGGGGGACCAGGCCGATCCCCAGCTTTTGCATTCTACCTCTCCGGTCG
1 AGGATCAATAGCACGCAAGGGGGACCAGGCCGATCCCCAGCTTGTGCATTCTACCTCTCCGGTCG
* * * *
21001021 GCTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCATGTCTAAG
66 ACTGAGCGCCCACATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATGCCATGTCTAAG
* *
21001086 CATATAGAGTTCATTCCCAGTCTAAGATCGGATCGGGCCAAGGGTTATGGTAGCAGGACCAGCAA
131 CATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGGCCAAGGGTTATGGTAGCAGGACCAGCAA
21001151 C
196 C
* ** * * * *
21001152 AGGATCAATAGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGTGCATTCTGCCTTTCCGGTTG
1 AGGATCAATAGCACGCAAGGGGGACCAGGCCGATCCCCAGCTTGTGCATTCTACCTCTCCGGTCG
* * * * *
21001217 ATTGAGTGCCCATATGCTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATCGCCA-GTCTAA
66 ACTGAGCGCCCACATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-GCCATGTCTAA
* * *
21001281 GCATACGGAGTTCATTCCCGGTCTAGGATCAGATCGG
130 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGG
21001318 ATCGAGGGTT
Statistics
Matches: 141, Mismatches: 24, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
196 138 0.98
197 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.26
Consensus pattern (196 bp):
AGGATCAATAGCACGCAAGGGGGACCAGGCCGATCCCCAGCTTGTGCATTCTACCTCTCCGGTCG
ACTGAGCGCCCACATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATGCCATGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGGCCAAGGGTTATGGTAGCAGGACCAGCAA
C
Found at i:21009411 original size:26 final size:26
Alignment explanation
Indices: 21009330--21009401 Score: 135
Period size: 26 Copynumber: 2.8 Consensus size: 26
21009320 TGGGTTGGCT
21009330 TAAGCATACGGAGTTCATTCTATGTC
1 TAAGCATACGGAGTTCATTCTATGTC
21009356 TAAGCATACGGAGTTCATTCTATGTC
1 TAAGCATACGGAGTTCATTCTATGTC
*
21009382 TAAGCATACGGTGTTCATTC
1 TAAGCATACGGAGTTCATTC
21009402 CCAATCTAAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCTATGTC
Found at i:21009591 original size:26 final size:26
Alignment explanation
Indices: 21009554--21009606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21009544 GTTGACTTAG
21009554 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21009580 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21009606 G
1 G
21009607 ATTAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21009898 original size:159 final size:159
Alignment explanation
Indices: 21009720--21010083 Score: 388
Period size: 158 Copynumber: 2.3 Consensus size: 159
21009710 CGTATGCCCA
* *
21009720 TTTCATGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCCCAG-TCAGA-TCGAGG
1 TTTCATGGGTTGACTTAGGCATACGAGAGTTCATTCCATGTCTAAGCACCAGATCAGACT-GAGG
* ** * * **
21009782 GTTGTGGCAGTGGGACCGGCAGCACGCAGAGGGGGAC-CGTACTGATCCCCAGCTTGTGCATTAT
65 GTTGTAGCAGCAGGACCGACAGCACGCAG-GGGGGACGCGT-C-AATCCCCAGCTTACGCATTAT
* *
21009846 GCCTCTCCGGTCGGTTCAA-CACCCGGACGCTCG
127 ACCTCTCCGGTCGGTT-AAGCACCCGCACGCTCG
* * * *
21009879 TTTCATGGGTTGACTTAGGCATATGA-AGTTCATTCCCA-ATCTAAG-ATCGGATCAGACTGAGG
1 TTTCATGGGTTGACTTAGGCATACGAGAGTTCATT-CCATGTCTAAGCACCAGATCAGACTGAGG
* * * * * *
21009941 GTTGTAGCAGCAGGATCGATAGCACGTAGGGGGGACTGGGTCAATCCCCATCTTACGCATTCTAC
65 GTTGTAGCAGCAGGACCGACAGCACGCAGGGGGGAC-GCGTCAATCCCCAGCTTACGCATTATAC
21010006 CTCTCCGGTCGGTTAAGCACCCGCACGCTCG
129 CTCTCCGGTCGGTTAAGCACCCGCACGCTCG
*
21010037 TTTCATGGGTT-AGCTTAGGCATACG-GAGTTTATTCCATGTCTAAGCA
1 TTTCATGGGTTGA-CTTAGGCATACGAGAGTTCATTCCATGTCTAAGCA
21010084 TACAAAGTTC
Statistics
Matches: 171, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
157 6 0.04
158 88 0.51
159 69 0.40
160 8 0.05
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (159 bp):
TTTCATGGGTTGACTTAGGCATACGAGAGTTCATTCCATGTCTAAGCACCAGATCAGACTGAGGG
TTGTAGCAGCAGGACCGACAGCACGCAGGGGGGACGCGTCAATCCCCAGCTTACGCATTATACCT
CTCCGGTCGGTTAAGCACCCGCACGCTCG
Found at i:21010220 original size:184 final size:183
Alignment explanation
Indices: 21009904--21010454 Score: 615
Period size: 184 Copynumber: 3.0 Consensus size: 183
21009894 TAGGCATATG
* * * *
21009904 AAGTTCATTCCCAATCTAAGATCGGATCAGACTGAGGGTTGT-AGCAGCAGGATCGATAGCACGT
1 AAGTTCATTCCCAGTCTAAGATCGAACCAGAC-GAGGGTTGTGA-CAGCAGGATCGACAGCACGT
* * * * * * *
21009968 AGGGGGGACTGGGTCAATCCCCATCTTACGCATTCTACCTCTCCGGTCGGTTAAGCACCCGCACG
64 AGGGGGGACCGAGTCGATCCTCAGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACCCGCACG
* *
21010033 CTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACA
129 CTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
21010088 AAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGTGACAGCAGGATCGACAGCACGTA
1 AAGTTCATTCCCAGTCTAAGATCGAACCAGA-CGAGGGTTGTGACAGCAGGATCGACAGCACGTA
* ** * **
21010153 GGGGGGACCGAGTCGATCCTCAGCTTGCGCATTCTATCTCTCCGACCGGTTGAGCGCCCATACGC
65 GGGGGGACCGAGTCGATCCTCAGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACCCGCACGC
* * * *
21010218 TCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATACG
130 TCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACA
* * * * * * * * *
21010272 GAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGCGTTGCGGCGGTAGGATC-AGCAGCACGC
1 AAGTTCATTCCCAGTCTAAGATCGAACCAGA-CGAGGGTTGTGACAGCAGGATCGA-CAGCACGT
* * * * * * * * *
21010336 AGAGGAGGACC-AGGTCGGTCTTCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCACTCGCA
64 AG-GGGGGACCGA-GTCGATCCTCAGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACCCGCA
* *
21010400 CGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
127 CGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
21010455 TGGAGTTCAA
Statistics
Matches: 307, Mismatches: 53, Indels: 13
0.82 0.14 0.03
Matches are distributed among these distances:
183 1 0.00
184 211 0.69
185 95 0.31
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (183 bp):
AAGTTCATTCCCAGTCTAAGATCGAACCAGACGAGGGTTGTGACAGCAGGATCGACAGCACGTAG
GGGGGACCGAGTCGATCCTCAGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACCCGCACGCT
CGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
Found at i:21010270 original size:26 final size:26
Alignment explanation
Indices: 21010239--21010291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21010229 GTTAACTTAG
21010239 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21010265 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21010291 G
1 G
21010292 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21010474 original size:26 final size:26
Alignment explanation
Indices: 21010424--21010475 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21010414 GTTGGCTTAG
* **
21010424 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCAATCCAAATCTAA
*
21010450 GCATATGGAGTTCAATCCAAATCTAA
1 GCATACGGAGTTCAATCCAAATCTAA
21010476 TAGTTTGAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCAAATCTAA
Found at i:21010568 original size:11 final size:11
Alignment explanation
Indices: 21010550--21010581 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
21010540 GGCCACCATC
21010550 ACCGGAGCATT
1 ACCGGAGCATT
*
21010561 ATCGGAGCATT
1 ACCGGAGCATT
21010572 ACCGGAGCAT
1 ACCGGAGCAT
21010582 CACTGGATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.19
Consensus pattern (11 bp):
ACCGGAGCATT
Found at i:21011084 original size:26 final size:26
Alignment explanation
Indices: 21011039--21011117 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
21011029 GTTGACTTAG
* *
21011039 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
21011065 GCTTATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21011091 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21011117 G
1 G
21011118 ATCGGACCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21011555 original size:158 final size:158
Alignment explanation
Indices: 21011091--21011591 Score: 526
Period size: 159 Copynumber: 3.2 Consensus size: 158
21011081 CCCAGTCTAA
* * * * * *
21011091 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAAGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * ** * * *
21011155 AGCACGTA-AGGGGACCGGGTCGATCCCTAGCTTACGCATTCTGCCTCTCCGATCGACTGAGTGC
65 AGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * *
21011219 CCGCACACCCGTTTAATGGGTTGGCTTAG
130 CCGAACACTCGTTTAGTGGGTTGGCTTAG
* * ** * * * * * *
21011248 GCATAGGGAGTTCATTCCATGTCTATGCCCTAG-TCGGACCAAGGGTTGTAGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATTGGACCGGACCGAGGGTTGTGGCAGCAGGATC-GA
* * * *
21011311 CAGCACATAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAAC
64 CAGCACATAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * *
21011376 ACCCGAACGCTCGTTTAGTGGGTTGACTTAG
128 GCCCGAACACTCGTTTAGTGGGTTGGCTTAG
* * * *
21011407 GCATACAGAGTTCATTCCCA-GTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * *
21011471 AGCACATAGGGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGATAGGTTGAGCGC
65 AGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
** *
21011536 CCTTACACTCGTTTCGTGGGTTGGCTTAG
130 CCGAACACTCGTTTAGTGGGTTGGCTTAG
21011565 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21011592 CATACGGAGT
Statistics
Matches: 273, Mismatches: 62, Indels: 17
0.78 0.18 0.05
Matches are distributed among these distances:
156 4 0.01
157 50 0.18
158 96 0.35
159 119 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGAACACTCGTTTAGTGGGTTGGCTTAG
Found at i:21012316 original size:26 final size:26
Alignment explanation
Indices: 21012279--21012331 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21012269 GTTGACTTAG
*
21012279 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
21012305 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21012331 G
1 G
21012332 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21012783 original size:26 final size:26
Alignment explanation
Indices: 21012754--21012806 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21012744 GTTGGCTTAG
21012754 GCATACGGAGTCCATT-CCATGTCTAA
1 GCATACGGAGTCCATTCCCA-GTCTAA
*
21012780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
21012806 G
1 G
21012807 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:21013150 original size:26 final size:26
Alignment explanation
Indices: 21013121--21013173 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21013111 GTTGACTTAG
* *
21013121 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21013147 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21013173 G
1 G
21013174 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21014042 original size:26 final size:26
Alignment explanation
Indices: 21013990--21014042 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21013980 GTGGACTTAG
*
21013990 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCACTAGTCTAA
*
21014016 GCATACGGAGTTCACTCAC-AGTGTAA
1 GCATACGGAGTTCA-TCACTAGTCTAA
21014042 G
1 G
21014043 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCACTAGTCTAA
Found at i:21014088 original size:869 final size:864
Alignment explanation
Indices: 21012398--21014545 Score: 2776
Period size: 869 Copynumber: 2.5 Consensus size: 864
21012388 CCGATCCCCG
* * * * *
21012398 GCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGATTAGGTATAGGGAGTTCATTCCATGTCTAGG
1 GCTGAGCGCCCGCACGATCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * ** * *
21012463 CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATTGGTAGCTTGCAGAGGGGGACCGGGTCGATCC
66 CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACG-AGAGGGGGACCGAGCCGATCC
* * ** * *
21012528 CCGACTTACGC-ATTATGCCTCTTCGGCCAACTTAGCGCCCGCACGCTCATTTCTTGGGTTGACT
130 CTGACTT--GCTATTATGCCTCTTCGACCGGCTTCGCGCCCGCACGCTCATTTCGTGGGTTGACT
* * * *
21012592 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTAGATCAAGGGTTGTGGTAGTAGGATC
193 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAAC-AGACCGAGGGTTGCGG-AGTAGGATT
*
21012656 GACAGCATGCAGGAGGGGACCGGGTTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGA
256 GACAGCATGTAGGAGGGGA-CGGG-TGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGA
* *
21012721 GCGCCAGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTCCATTCCATGTCTAAGCATAC
319 GCGCCAGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
* * * *
21012786 GGAGTTCATTCCCAGTCTAAGATCAAATCGGGCTGAGGGTTGTGACAACAGGACCAGCAGCAGGA
384 GGAGTTCATTCCCAGTCTAAGATCAAACCGGGATGAGGGTTGCGACAACAGGACCAGCAGCAAGA
* *
21012851 TCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCCCCAACCGGCTG
449 TCAACAGCACGCAGGGGGGAACGGGTCGATCCCCGGCTTGCACATTCTGCCTCCCCAACCGGCTG
* * * * *
21012916 AGTGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAGGCCCC
514 AGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGACATACAGAGCTCATTCCATGTCTAAGCCCC
* * * * * *
21012981 AGCTGGACCGAGAGTTGTGGTAGTAGGATCAGTAGCAGGATCAGCAGCACACAGAGGGGGATCGG
579 AGCCGGACCGAGAGTTCTGGCAGCAGGATCAGCAGCAGGATCAGCAGCACACAGAGGGGGATCGA
* * * *
21013046 GCTGATCCTCGGCTTGTGCATTATGCCTCTTCGGCCGGCTGAGCACCCGTACGCTCGTTTCATGG
644 GCTGATCCCCGACTTGTGCATTATACCTCTTCGACCGGCTGAGCACCCGTACGCTCGTTTCATGG
* * * *
21013111 GTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGAT
709 GTGGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCACTCACAGTGTAAGAT
** * ***
21013176 CGGACTGGACCGAGGGTTACAGCAGCAAGATCAACAACACACAGGAGGGACCGAGCCGATCCTTG
774 CGGACCAGACCGAAGGTTACAGCAGCAAGATCAACAACACACAGGAGGGACCGAGCCGATCCCCC
* *
21013241 GCTTACAAATTCTGCCTCTCTAACCA
839 ACTTACAAATTCTGCCTCTCCAACCA
* * * *
21013267 GTTGAGCGCCCGCACGATCGTTTCATGGGTTAGCTTAGGGATAGGGAGTTCATTCCGTGTCTAAG
1 GCTGAGCGCCCGCACGATCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * * *
21013332 CCCTAGCCAGACCGAGGGTTGTGGTAGCGAGATCGGCAGCACGTAGAGGGGGACCGAGCCGATGC
66 CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACG-AGAGGGGGACCGAGCCGATCC
* * * *
21013397 CTGACATGCATATTATGCCTCTTCGATCGGCTTCGCGCCCACACGCTCATTTCGTGGGTTCACTT
130 CTGACTTGC-TATTATGCCTCTTCGACCGGCTTCGCGCCCGCACGCTCATTTCGTGGGTTGACTT
* * * *
21013462 AGGCATCCGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGTAGGATTGA
194 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGG-AGTAGGATTGA
* * * * * **
21013527 CAGCATGTAGGAGGGGATCGGGCTGATCCTCGGCTTGCGCAATCTGCCTCTCTGACCGCCTGAGC
258 CAGCATGTAGGAGGGGA-CGGG-TGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGC
*
21013592 GCCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
321 GCCAGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
* * ** *
21013657 AGTTCATTCCCAGTTTAAGATCAGACCGGGATGAGGGTTGCGACAGTAGGACCAGTAGCAAGATC
386 AGTTCATTCCCAGTCTAAGATCAAACCGGGATGAGGGTTGCGACAACAGGACCAGCAGCAAGATC
* * * * * * * *
21013722 AACAGCACGTAGGGGGGAATGGGTTGATCCCCGGCTTGCGCATTTTGCCTCCTCAGCTGGCTGAG
451 AACAGCACGCAGGGGGGAACGGGTCGATCCCCGGCTTGCACATTCTGCCTCCCCAACCGGCTGAG
* *
21013787 TGCCCGCACGCTCATTTCGTGGGTTGGCTTAGACATACGGAGCTCATTCCGTGTCTAAGCCCCAG
516 TGCCCGCACGCTCATTTCGTGGGTTGGCTTAGACATACAGAGCTCATTCCATGTCTAAGCCCCAG
* ** * *
21013852 CCGGACCGAGGGTTCTGGCAGCAGGATTGGCAGTAGGATCGGCAGCACACAGAGGGGGATCGAGC
581 CCGGACCGAGAGTTCTGGCAGCAGGATCAGCAGCAGGATCAGCAGCACACAGAGGGGGATCGAGC
* **
21013917 TGATCCCCGACTTGTGCATTATACCTCTTCGATCGGCTGAGTGCCCGTACGCTCGTTTCATGGGT
646 TGATCCCCGACTTGTGCATTATACCTCTTCGACCGGCTGAGCACCCGTACGCTCGTTTCATGGGT
* *
21013982 GGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCACTCACAGTGTAAGATCG
711 GGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCACTCACAGTGTAAGATCG
* ** * * * * *
21014047 GACCAGACCGAAGGTTACGGCAGCAAGATTGATAGCACACAGGGGGGACCGGGTCGATCCCCCAC
776 GACCAGACCGAAGGTTACAGCAGCAAGATCAACAACACACAGGAGGGACCGAGCCGATCCCCCAC
* ** * * * *
21014112 TTGCGCATTTTGCCTCTCCGATCG
841 TTACAAATTCTGCCTCTCCAACCA
* ** * *
21014136 GCTAAGCGCCCGCACGGCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGATCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * *
21014201 CCCCAGTCGGACCGGGGGTTGTGGCAGCGGGACCGGCAGCACGAGAGGGGGACCGAGCTGATCCC
66 CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGAGAGGGGGACCGAGCCGATCCC
* *
21014266 TGGCTTGCTCATTATGCCTCTTCGACCGGC-TCAGCGCCCGCATGCTCATTTCGTGGGTTGACTT
131 TGACTTGCT-ATTATGCCTCTTCGACCGGCTTC-GCGCCCGCACGCTCATTTCGTGGGTTGACTT
* * *
21014330 ATGCATACGGAGTTCATTCCTAGTCTAAGATCA-AACCAGACCGAGGGTGGCAGGAGTAGGATTG
194 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAA-CAGACCGAGGGTTGC-GGAGTAGGATTG
* * * **
21014394 ACAGCACGTAAGGA-GGGACTGGGTCGGTCCCCAACTTATGCATTCTGCCTCTCCGATCGGTTGA
257 ACAGCATGT-AGGAGGGGAC-GGGT-GATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGA
* * ** *
21014458 GCACCCGTACATTCGTTTCGTGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCATAC
319 GCGCCAGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
21014523 GGAGTTCATTCCCAGTCTAAGAT
384 GGAGTTCATTCCCAGTCTAAGAT
21014546 TTTGAGCCAC
Statistics
Matches: 1094, Mismatches: 175, Indels: 21
0.85 0.14 0.02
Matches are distributed among these distances:
867 8 0.01
868 249 0.23
869 834 0.76
870 3 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (864 bp):
GCTGAGCGCCCGCACGATCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGAGAGGGGGACCGAGCCGATCCC
TGACTTGCTATTATGCCTCTTCGACCGGCTTCGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGGAGTAGGATTGACAG
CATGTAGGAGGGGACGGGTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCAG
TACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCAAACCGGGATGAGGGTTGCGACAACAGGACCAGCAGCAAGATCAACAG
CACGCAGGGGGGAACGGGTCGATCCCCGGCTTGCACATTCTGCCTCCCCAACCGGCTGAGTGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGACATACAGAGCTCATTCCATGTCTAAGCCCCAGCCGGA
CCGAGAGTTCTGGCAGCAGGATCAGCAGCAGGATCAGCAGCACACAGAGGGGGATCGAGCTGATC
CCCGACTTGTGCATTATACCTCTTCGACCGGCTGAGCACCCGTACGCTCGTTTCATGGGTGGACT
TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCACTCACAGTGTAAGATCGGACCA
GACCGAAGGTTACAGCAGCAAGATCAACAACACACAGGAGGGACCGAGCCGATCCCCCACTTACA
AATTCTGCCTCTCCAACCA
Found at i:21014527 original size:26 final size:26
Alignment explanation
Indices: 21014491--21014543 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21014481 GTTGGCTTAG
*
21014491 GCATACTGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21014517 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21014543 G
1 G
21014544 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21027264 original size:26 final size:26
Alignment explanation
Indices: 21027228--21027280 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21027218 GTTGACTTAG
*
21027228 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21027254 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21027280 G
1 G
21027281 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21027569 original size:158 final size:158
Alignment explanation
Indices: 21027287--21027587 Score: 390
Period size: 158 Copynumber: 1.9 Consensus size: 158
21027277 TAAGATCAGA
* * * ** *
21027287 CTGGATCGAGGGTTGCGGTAGCAGGATCAACAGCACGCAGGGGGGACTGGGCCGATCCCTGGCTT
1 CTGGATCGAGGGTTGCGGCAGCAGGACCAACAGCACGCAGAGGGGACCAGGCCAATCCCTGGCTT
* * * * * *
21027352 GCGCATTCTGCCTCTTTGACCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGG-ATA
66 GCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATA
*
21027416 GGGAGTTCATTCCATGTCTATGCCCCAG
131 CGGAGTTCATTCCATGTCTATGCCCCAG
* * *
21027444 CTGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGACCAGGCCAAT-CCTCGGC
1 CTGGATCGAGGGTTGCGGCAGCAGGACCAACAGCACGCAG-AGGGGACCAGGCCAATCCCT-GGC
* * * *
21027508 TTGCGCATTATGCCTCTTCGGCTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
64 TTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCA
21027573 TACGGAGTTCATTCC
129 TACGGAGTTCATTCC
21027588 CAGTCTAAGA
Statistics
Matches: 121, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
157 38 0.31
158 68 0.56
159 15 0.12
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.23
Consensus pattern (158 bp):
CTGGATCGAGGGTTGCGGCAGCAGGACCAACAGCACGCAGAGGGGACCAGGCCAATCCCTGGCTT
GCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATA
CGGAGTTCATTCCATGTCTATGCCCCAG
Found at i:21033807 original size:26 final size:26
Alignment explanation
Indices: 21033778--21033830 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21033768 GTTAACTTAG
21033778 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
21033804 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21033830 G
1 G
21033831 ATAAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21034291 original size:158 final size:158
Alignment explanation
Indices: 21033804--21034305 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 158
21033794 CCAAGTCTAA
* * *
21033804 GCATACGGAGTTCATTCCCA-GTCTAAGATAAGATCGGACCGAAGGTTACGACAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATAAGATCGGACCGAGGGTTGCGACAGCAAGATCAAC
* * * * * *
21033868 AGCACGCAGGGGGGATCGAGCTGATCCTCGGCTTGCGTATTCTGCCTCTCC-GACTGGCAGAAAG
65 AGCATGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGAG
* *
21033932 CCTGCACACCCGTTTCATGGGTTGGCTTAG
129 CCTGCAGACTCGTTTCATGGGTTGGCTTAG
* *** * * ** ** *
21033962 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGTAGCGGGACCAAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATAAGATCGGACCGAGGGTTGCGACAGCAAGATCAAC
* * * * * * * *
21034026 AGTATGCAGAGGGG-TACTGAGCCGATCCTCGGCTTGCCCATTATGCCTTTTCGATCGGCTCAGA
65 AGCATGCAGGGGGGAT-C-GAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGA
* * * *
21034090 GACC-GCACG-CTTGTTCCGTGGGTTGACTTAG
128 G-CCTGCA-GACTCGTTTCATGGGTTGGCTTAG
* ** * **
21034121 GCGTACGGAGTTCATTCTCA-GTCTAAGATTGGACCAAACCGAGGGTTGCGACAGCAAGATCAAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATAAGATCGGACCGAGGGTTGCGACAGCAAGATCAAC
* * * * *
21034185 AGCATGCAGGGGGGATCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGGTCGGTTGAGTGC
65 AGCATGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGAGC
21034250 CTGCAGACTCGTTTCATGGGTTGGCTTAG
130 CTGCAGACTCGTTTCATGGGTTGGCTTAG
21034279 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21034306 CATATAGAGT
Statistics
Matches: 263, Mismatches: 68, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 9 0.03
158 136 0.52
159 112 0.43
160 6 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATAAGATCGGACCGAGGGTTGCGACAGCAAGATCAACA
GCATGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGAGCC
TGCAGACTCGTTTCATGGGTTGGCTTAG
Found at i:21034309 original size:26 final size:26
Alignment explanation
Indices: 21034279--21034331 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21034269 GTTGGCTTAG
*
21034279 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21034305 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21034331 G
1 G
21034332 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21034688 original size:26 final size:26
Alignment explanation
Indices: 21034659--21034711 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21034649 GTTGACTTAG
*
21034659 GCATATGAAGTT-TATCCCTAGTCTAA
1 GCATACGAAGTTCTATCCC-AGTCTAA
* *
21034685 GCATACGTAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCTATCCCAGTCTAA
21034711 G
1 G
21034712 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATACGAAGTTCTATCCCAGTCTAA
Found at i:21034986 original size:159 final size:160
Alignment explanation
Indices: 21034770--21035189 Score: 458
Period size: 159 Copynumber: 2.6 Consensus size: 160
21034760 GGGATCAGGT
* * ** *
21034770 CGATCCCCAGCTTACTCATTTTGCCTTTTCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGT
1 CGATCCCCAGCTTACGCATTATGCCTTTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * *** *
21034835 TGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CTGGATTGAGGGTTGTGACAGC-
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACTGAGGGTTGTGACAGCA
** *
21034898 GGCACCGGCAGCACGCA-GAGTGGGACT-GAGC
131 GG-ACCAACAGCACACAGGAG-GGGA-TAGAGC
* *
21034929 CGATCCCCAGCTTACGCATTATGCCTTTTCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGT
1 CGATCCCCAGCTTACGCATTATGCCTTTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * * * * *
21034994 TGACTTATGAATATGGAGTTCATTCCCA-GTCTAAG-ATCGGACCAAACTGAGGGTTGTGGCAGC
66 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACTGAGGGTTGTGACAGC
* * *
21035057 AGGATCAATAGCACACAGGAGGGGATAGGGC
130 AGGACCAACAGCACACAGGAGGGGATAGAGC
* * * * *
21035088 CGATCCCC-GACTTGCGCATTCTGCCTCTTCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1 CGATCCCCAG-CTTACGCATTATGCCTTTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
21035152 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
21035190 TACGAAGTTC
Statistics
Matches: 216, Mismatches: 37, Indels: 15
0.81 0.14 0.06
Matches are distributed among these distances:
158 7 0.03
159 200 0.93
160 9 0.04
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (160 bp):
CGATCCCCAGCTTACGCATTATGCCTTTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACTGAGGGTTGTGACAGCA
GGACCAACAGCACACAGGAGGGGATAGAGC
Found at i:21035198 original size:26 final size:26
Alignment explanation
Indices: 21035161--21035213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21035151 GTTGGCTTAG
* *
21035161 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
21035187 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
21035213 G
1 G
21035214 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:21035892 original size:26 final size:26
Alignment explanation
Indices: 21035856--21035908 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21035846 GTTGACTTAG
*
21035856 GCATATGGAGTT-CATCCCCAGTCTAA
1 GCATACGGAGTTCCATCCCCA-TCTAA
*
21035882 GCATACGGAGTTCCTTCCCCATCTAA
1 GCATACGGAGTTCCATCCCCATCTAA
21035908 G
1 G
21035909 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCCATCCCCATCTAA
Found at i:21036228 original size:26 final size:26
Alignment explanation
Indices: 21036198--21036250 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21036188 GTTGACTTAG
*
21036198 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21036224 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21036250 G
1 G
21036251 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21036913 original size:159 final size:158
Alignment explanation
Indices: 21036678--21037106 Score: 377
Period size: 159 Copynumber: 2.7 Consensus size: 158
21036668 CAGCACGTAG
* * * * * * * * *
21036678 GGGGGACCGGGCCGATCCCC-GACTTACGCATTTTGCCTCTCTGGCCTGCTGAGCGCCCGCACG-
1 GGGGGACAGAGCCGATCCCCAG-CTTACCCATTATGCCTCTCCGGCCGGTTCAACGCCCGCACGC
* * * * *
21036741 TCCATTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGACTGA
65 T-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACCGGACCGA
** * * **
21036805 GGGTTGTGGCAGCGGGACCGACATTACACA
129 GGGTTACGGCAACAGGACCGACAGCACACA
* * * * * * *
21036835 GAAGGGGATCAG-GTCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGTTTCAACGCCCGTAC
1 G--GGGGA-CAGAGCCGATCCCCAGCTTACCCATTATGCCTCTCCGGCCGGTTCAACGCCCGCAC
* * * * * **
21036899 GCTCTTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAAAG--TAAG-TTCAGACCGGAC
63 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CC-ATGTCTAAGCCCCAGACCGGAC
* *
21036961 CGAGGGTTACGGCAACAGGATCGACAGCACGCA
126 CGAGGGTTACGGCAACAGGACCGACAGCACACA
* ** * *
21036994 GGGGGACCGAGCCGATCCCTGGCTTACCCATTCTGCCTCTCCGGCCGGTTGAACGCCCGCACGCT
1 GGGGGACAGAGCCGATCCCCAGCTTACCCATTATGCCTCTCCGGCCGGTTCAACGCCCGCACGCT
21037059 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21037107 ATACAGAGTT
Statistics
Matches: 211, Mismatches: 49, Indels: 23
0.75 0.17 0.08
Matches are distributed among these distances:
155 2 0.01
156 4 0.02
157 86 0.41
158 2 0.01
159 109 0.52
160 6 0.03
161 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.28, T:0.24
Consensus pattern (158 bp):
GGGGGACAGAGCCGATCCCCAGCTTACCCATTATGCCTCTCCGGCCGGTTCAACGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACCGGACCGAGG
GTTACGGCAACAGGACCGACAGCACACA
Found at i:21037115 original size:26 final size:26
Alignment explanation
Indices: 21037079--21037131 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21037069 GTTGGCTTAG
*
21037079 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21037105 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21037131 G
1 G
21037132 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21037462 original size:26 final size:26
Alignment explanation
Indices: 21037432--21037484 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21037422 GTTGGCTTAG
*
21037432 GCATACAGAGTTC-ATTCCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
**
21037458 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
21037484 G
1 G
21037485 AGTTTAAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:21038613 original size:26 final size:26
Alignment explanation
Indices: 21038583--21038635 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21038573 GTTGGCTTAG
21038583 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21038609 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21038635 G
1 G
21038636 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.