Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 110 of 125
Found at i:21039682 original size:26 final size:26
Alignment explanation
Indices: 21039653--21039705 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21039643 ATTGACTTAG
21039653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21039679 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21039705 G
1 G
21039706 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21041270 original size:159 final size:158
Alignment explanation
Indices: 21041106--21041408 Score: 360
Period size: 159 Copynumber: 1.9 Consensus size: 158
21041096 CAGCCGGACT
* ** * * * *
21041106 GAGGGTTGTGGCAGCGGGATCGGCAGCACATAGAGGGGGACC-AGGCCGATCCCCAGCTTATGCA
1 GAGGGTTGCGGCAGCAAGATCGACAGCACATAGAGGGAGACCGA-GCCAATCCCCAGCTTACGCA
* * * *
21041170 -TCATGCTTCTTCGATCGGCTCAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAG-G
65 TTC-TGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT-AGTG
*
21041233 AGTTCATTCCCAATCTAAGATTGGGCCAAACC
128 AGTTCA-TCACAATCTAAGATTGGGCCAAACC
* * * * ** *
21041265 GAGGGTTGCGGTAGTAAGATCGACAGCACGTAGTGGGAGACCGAGCCAATTGCCAGCTTGCGCAT
1 GAGGGTTGCGGCAGCAAGATCGACAGCACATAGAGGGAGACCGAGCCAATCCCCAGCTTACGCAT
* *
21041330 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAGTTAGGCATAGTGAGT
66 TCTGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAGTGAGT
21041395 TCATCACAATCTAA
131 TCATCACAATCTAA
21041409 ACATACGGAG
Statistics
Matches: 120, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
158 12 0.10
159 105 0.88
160 3 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGGGTTGCGGCAGCAAGATCGACAGCACATAGAGGGAGACCGAGCCAATCCCCAGCTTACGCAT
TCTGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAGTGAGT
TCATCACAATCTAAGATTGGGCCAAACC
Found at i:21041722 original size:159 final size:158
Alignment explanation
Indices: 21041410--21041752 Score: 418
Period size: 159 Copynumber: 2.2 Consensus size: 158
21041400 ACAATCTAAA
21041410 CATACGGAGTTCATT-CCTAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAAGATCGACA
1 CATACGGAGTTCATTCCCTA-TCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAAGATCGACA
* *
21041474 GCAAGTAGGGGGGACCGTCCCGATCCCTGACTTATGAATTCTACCTCTCTGATCGGCTGAGCGCC
65 GCAAGTAGGGGGGACCGGCCCGATCCCTGACTTATGAATTCTACCTCTCCGATCGGCTGAGCGCC
* * *
21041539 CGTATGCCCGTTTCGTGGGTTGGCTTAGG
130 CGCAAGCCCGTTTCATGGGTTGGCTTAGG
* ** * * *
21041568 CATAGGGAGTTCATTCCCTATCTAAGATCAGATTAGACTGAGGGTTATGGCAGCAGGATTGACAG
1 CATACGGAGTTCATTCCCTATCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAAGATCGACAG
* * *** * * * * * * *
21041633 CACGTAGAGGGGGATCGGGTTGATCCCTGGCTTGTGTATTTTGCCTCTCCGATCGGTTGAGTGCC
66 CAAGTAG-GGGGGACCGGCCCGATCCCTGACTTATGAATTCTACCTCTCCGATCGGCTGAGCGCC
*
21041698 CGCAAGCTCGTTTCATGGGTTGGCTTAGG
130 CGCAAGCCCGTTTCATGGGTTGGCTTAGG
* * *
21041727 CATACGAAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCCTATCTAAG
21041753 CCCCAGCCAG
Statistics
Matches: 155, Mismatches: 28, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 60 0.39
159 95 0.61
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCTATCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAAGATCGACAG
CAAGTAGGGGGGACCGGCCCGATCCCTGACTTATGAATTCTACCTCTCCGATCGGCTGAGCGCCC
GCAAGCCCGTTTCATGGGTTGGCTTAGG
Found at i:21048568 original size:158 final size:157
Alignment explanation
Indices: 21048334--21048834 Score: 499
Period size: 159 Copynumber: 3.2 Consensus size: 157
21048324 ACTCCGTATG
* *
21048334 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTGAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTACTAAAC
* *
21048399 CGATCGGAGAGGCAGAATGCACAAGTCGGGGATTGACCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCG-TCCCCCCTGCGTGCTGTCGATCCT
*
21048464 GCTGCCTCAACCATCAGTCCGATCTGAT
130 GCTGCCACAACCATCAGTCCGATCTGAT
* * * *
21048492 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGTGCTAAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTACTAAA
* * * * * * * *
21048556 CCGGTCGAAGAGGCATAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCATGCTGTC-AGT
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCC-GTCCCCC-CTGCGTGCTGTCGA-T
* * * * **
21048620 CCTGCTGCCACAACCCTCGGT-CTAGCTAGGG
127 CCTGCTGCCACAACCATCAGTCCGATCT-GAT
* * * * * * * * *
21048651 CTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGTGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTACTAAAC
* * * * *
21048716 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGA-TCACCCCGTCCCCCTTACGTGCTGTCGATCTT
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGA-CCCGTCCCCCCTGCGTGCTGTCGATCCT
* * * * **
21048780 GCTGCCGCAACCTTCAGTCTGGTCCAAT
130 GCTGCCACAACCATCAGTCCGATCTGAT
*
21048808 CTTAGAC-TGGGAATAAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
21048835 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 50 0.19
158 107 0.40
159 111 0.41
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTACTAAAC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCATCAGTCCGATCTGAT
Found at i:21048844 original size:26 final size:26
Alignment explanation
Indices: 21048808--21048860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21048798 CTGGTCCAAT
21048808 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
21048834 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21048860 C
1 C
21048861 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21050436 original size:26 final size:26
Alignment explanation
Indices: 21050398--21050453 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
21050388 GGCTCAAAAT
21050398 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21050424 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21050450 CTTA
1 CTTA
21050454 AGCTAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21050928 original size:26 final size:26
Alignment explanation
Indices: 21050899--21050951 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21050889 CCGATCCAAT
21050899 CTTAGACTG-GAAATGAACTCCGTATG
1 CTTAGACTGAG-AATGAACTCCGTATG
*
21050925 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
21050951 C
1 C
21050952 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:21051620 original size:26 final size:26
Alignment explanation
Indices: 21051584--21051636 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21051574 CCAGTTCGAT
21051584 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21051610 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21051636 C
1 C
21051637 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21052832 original size:159 final size:159
Alignment explanation
Indices: 21052542--21053076 Score: 435
Period size: 159 Copynumber: 3.4 Consensus size: 159
21052532 CCCGCTGCCA
* ** *
21052542 ATCCTACTGCCATAACCCTCGGTCCGA-CTAGGGCTTAGAC-GTGGAATGAACTTCGTATGCCTA
1 ATCCTACTGCCATAACCCTCGGTCTGATCT-GATCTTAGACTG-GGAATGAACTCCGTATGCCTA
* * * * * * * * ** *
21052605 AACCAACCCATGGAACGAGCGTGC-GGCTGCTCAACC-GACTGGAGAGGCAAAATGCGTAAGTCG
64 AGCCAACCCATGAAATGAGCATGCAGG-AGCTCAACCGGTC-GAAGAGGCAGAATGCACAAGCCG
* *
21052668 AGGATCGGCCCGATCCCCTCCAATGTGCTGTCG
127 GGGATCGGCCCGATCCCCTCCTATGTGCTGTCG
* *
21052701 ATCCTACTGCCATAACCCTCGGTCTGATCTGATCTTTGACTGGGAATGAACTCTGTATGCCTAAG
1 ATCCTACTGCCATAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
21052766 TCAACCCATGAAATGAGCATGCAGGAGTTGAGCCGGTCGAAGAGGCATAATGCACAAGCCGGGGA
66 CCAACCCATGAAATGAGCATGCAGGAGCTCAACCGGTCGAAGAGGCAGAATGCACAAGCCGGGGA
* * * *
21052831 TCAGCCCGGTCCTCCT-CTGTGAGCTGTC-
131 TCGGCCCGATCC-CCTCCTATGTGCTGTCG
* * ** *
21052859 AGT-CTCACTGCCACAACCCTCGGTCTG-GCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCC
1 A-TCCT-ACTGCCATAACCCTCGGTCTGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCC
* ** * * * * *
21052921 TAAGCCAACCCATGAAATGGGTGTGCGGGTGCTCAACTGGTCGGAGAGGCAGAATGCGCAAGCCG
62 TAAGCCAACCCATGAAATGAGCATGCAGGAGCTCAACCGGTCGAAGAGGCAGAATGCACAAGCCG
* * * **
21052986 GGGATCGACCTGAT-CCC-CCTACGTGCTACCG
127 GGGATCGGCCCGATCCCCTCCTATGTGCTGTCG
* ** * * * *
21053017 ATCTTACTATCGTAACCCACGGTCTGATCCGATCTTAGATTGGGAATGAACTCCGTATGC
1 ATCCTACTGCCATAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
21053077 TTAGACTAGG
Statistics
Matches: 294, Mismatches: 68, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 50 0.17
158 9 0.03
159 223 0.76
160 11 0.04
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (159 bp):
ATCCTACTGCCATAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCCATGAAATGAGCATGCAGGAGCTCAACCGGTCGAAGAGGCAGAATGCACAAGCCGGGGA
TCGGCCCGATCCCCTCCTATGTGCTGTCG
Found at i:21054538 original size:159 final size:159
Alignment explanation
Indices: 21054121--21054561 Score: 473
Period size: 159 Copynumber: 2.8 Consensus size: 159
21054111 AACTCCGTAT
* *
21054121 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * ** * *
21054186 CTAGCCAGAGAGGCAGAATGCGC-AA-GTCGAGGATC-AGCCTGGTCCCGTTTTACGTGCTGCCT
66 CCGGCCGGAGAGGCAGAATGTGCAAACGT-G-GGATCGA-CCCGGTCCCCCTCTACGTGCTGCCG
*
21054248 GTCCCGATGCCACAACCCTCGATCCGACTGGG
128 GTCCCGATGCCACAACCCTCGATCAGACTGGG
* * * * *
21054280 GCTTAGAC-TGGGAATGAACTCCCTATACATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * * * *
21054344 GCCGATCGAAGAGGCATAATGTGCAATGCG-AGGATCGACCCGATCCCCCTCTACGTGCTGCGGG
65 GCCGGCCGGAGAGGCAGAATGTGCAA-ACGTGGGATCGACCCGGTCCCCCTCTACGTGCTGCCGG
* *
21054408 TCTCGTTGCCACAACCCTCGATCTAG-CTGGG
129 TCCCGATGCCACAACCCTCGATC-AGACTGGG
* * * ** *
21054439 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTTTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
21054504 CCGGCCGGAGAGGCAGAATGTGCAAACGTGGGATCGAACCGGT-CCCCTCTACGTGCTG
66 CCGGCCGGAGAGGCAGAATGTGCAAACGTGGGATCGACCCGGTCCCCCTCTACGTGCTG
21054562 TCGATCTTGC
Statistics
Matches: 228, Mismatches: 46, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
158 18 0.08
159 205 0.90
160 4 0.02
162 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGTGCAAACGTGGGATCGACCCGGTCCCCCTCTACGTGCTGCCGGTC
CCGATGCCACAACCCTCGATCAGACTGGG
Found at i:21054634 original size:26 final size:26
Alignment explanation
Indices: 21054598--21054650 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21054588 CCAGTCTGAT
21054598 CTTAGACTGGGAATGAACAT-CGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
* *
21054624 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21054650 C
1 C
21054651 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21055135 original size:184 final size:185
Alignment explanation
Indices: 21054795--21055162 Score: 472
Period size: 185 Copynumber: 2.0 Consensus size: 185
21054785 CCAGTTAGGG
* * * * ** *
21054795 CTTAGACATGGAATTAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTGTGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCAACAAAACGAGCATGCGGGCACTCAGC
* * * *
21054860 CGGTCGAAGAGGTAGATTGCGTAAGCCGGGGATCAGCCCGGTCCCCCCCTGCGTGCTATCGATCC
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCCTGCGTGCTATCGATCC
*
21054925 TTCTGCCGCAACCCTCAGCCCGATCTGATCTTAGACTAGGAATGAACTCCGTATC
131 TGCTGCCGCAACCCTCAGCCCGATCTGATCTTAGACTAGGAATGAACTCCGTATC
* * * * *
21054980 CTTAGACATTGAATGAACTCTGTATGCCTAAGCCAACCAACGAAATGAGCATGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCAACAAAACGAGCATGCGGGCACTCAGC
* * *
21055045 CGGTCGGAGGGGCAGAATGTGCAAGCCGGGGATC-GACCCGAT-CCCCCCTGCGTGCTATCGATC
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCCCCCTGCGTGCTATCGATC
* * * * *
21055108 CTGCTGTCGTAACCCTC-GATCCGATCTGATCTTAGACTGGGAATGAACTTCGTAT
130 CTGCTGCCGCAACCCTCAG-CCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
21055163 GCCTAAGTCA
Statistics
Matches: 156, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
183 1 0.01
184 69 0.44
185 86 0.55
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (185 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCAACAAAACGAGCATGCGGGCACTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCCTGCGTGCTATCGATCC
TGCTGCCGCAACCCTCAGCCCGATCTGATCTTAGACTAGGAATGAACTCCGTATC
Found at i:21055594 original size:38 final size:38
Alignment explanation
Indices: 21055543--21055621 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
21055533 GCGGGCACTC
*
21055543 AACCGATCAGAGAGGCAGGATGCGCAAGCCAGGGGTCG
1 AACCGACCAGAGAGGCAGGATGCGCAAGCCAGGGGTCG
*
21055581 AACCGACCAGAGAGGCAGGATGCGCAAGCTAGGGGTCG
1 AACCGACCAGAGAGGCAGGATGCGCAAGCCAGGGGTCG
21055619 AAC
1 AAC
21055622 GGATGGTAGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.30, C:0.24, G:0.38, T:0.08
Consensus pattern (38 bp):
AACCGACCAGAGAGGCAGGATGCGCAAGCCAGGGGTCG
Found at i:21056605 original size:159 final size:160
Alignment explanation
Indices: 21056241--21057560 Score: 438
Period size: 159 Copynumber: 8.2 Consensus size: 160
21056231 AACTCCGTAT
* * * *
21056241 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACAAAATGAGCGTGTAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATAGGCACTCAG
* ** * * *
21056306 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTCCTATGTGCTGTCAATC
66 CCAGCCGAAGAGGCAGAATGAACAAGCCGGGGATAGGCCCGGTCCCCTCCTACGTGCTGTCAATC
* * * *
21056371 TTGCTACCACAACCCTTGGTCCGATCTGAT
131 TAGCTACCACAACCCTCGATCCGATCTGAG
* ** * *
21056401 G-TTAGAC-TGGGAATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCGTATGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATAGGCACTCA
* ** * *
21056464 GCCGGTTGAAGAGGCATAATGAATAAGCCGGGGATAGGCCCGGTCCCC-CTCTACGTGCTG-CTA
65 GCCAGCCGAAGAGGCAGAATGAACAAGCCGGGGATAGGCCCGGTCCCCTC-CTACGTGCTGTC-A
* * *
21056527 GTCTAGCTGCCACAACCCTCGATCTGA-CT-AGG
128 ATCTAGCTACCACAACCCTCGATCCGATCTGA-G
* * * * *
21056559 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAAC-AG-GCATACGGGCGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATA--GGCACTC
* *** * * * * * *
21056622 AGCCAACC-AGAGAGGCAGAATGCGTAAGCCGAGGTTCA-GCCTGGTCCCC-CCTGCGTTCTATC
64 AGCCAGCCGA-AGAGGCAGAATGAACAAGCCGGGGAT-AGGCCCGGTCCCCTCCTACGTGCTGTC
* * * ** **
21056684 GATCTTGCTGCTGCAACCCTCGATTTGATCTGA-
127 AATCTAGCTACCACAACCCTCGATCCGATCTGAG
* * * * *** *
21056717 TCTTAGAC-TGGGAATGAATTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATAGGCACTCA
* * * * * * * *
21056781 GTCGGTCGGAGAGGCATAA--AACGCAAGTCGGGGATCA-GCCTGATCCCCCTTTGCATGCTACC
65 GCCAGCCGAAGAGGCAGAATGAA--CAAGCCGGGGAT-AGGCCCGGT-CCCC--T-C---CTA-C
* ** * * *
21056843 GATCCCGCTGTCGATCCT-GCTGTCACAACCCTCGGTTCGA-CTGGG
119 G-T---GCTGTCAAT-CTAGCTACCACAACCCTCGATCCGATCTGAG
** * * *
21056888 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAGCGTA-CGGACGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATAGG-CACTCA
** * * ** * *
21056952 ATCGGGC-AGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGT-CCCTCCCTGTGTGCTGTTG
65 GCCAGCCGA-AGAGGCAGAATGAACAAGCCGGGGATAGGCCCGGTCCCCT-CC----TAC-G-TG
* * * * * * * * * *
21057015 ATCGTGCTATTGGTCTTGCTGCCGCAACCCTC-AACTTGGTC-CAA
122 CT-GT-C-A---ATCTAGCTACCACAACCCTCGATC-CGATCTGAG
* * * ***
21057059 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTCCGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATAGGCACTCA
** *** * * * * *
21057123 GCTGGCC-AGAGAGGCAGAATGCGTAAGCCGAGGATCGGTCCGGT-CCC-CCTGCGTGCTTTCAA
65 GCCAGCCGA-AGAGGCAGAATGAACAAGCCGGGGATAGGCCCGGTCCCCTCCTACGTGCTGTCAA
** * * *
21057185 TCCTA-CTACCGTAACCCTC-AGTCTGGTCCGA-
129 T-CTAGCTACCACAACCCTCGA-TCCGATCTGAG
* * * * * *** *
21057216 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATAGGCACTCA
* * * ** * * *
21057280 GCC-GACCGAAGAGGCATAATGCATAAGCCAAGGATCGACCTC-GT-CCCTCACTACGTGCTGCC
65 GCCAG-CCGAAGAGGCAGAATGAACAAGCCGGGGATAGGCC-CGGTCCCCTC-CTACGTGCTGTC
* * * *
21057342 GATCCCA-CTGCCACAACCCTCGATCCGA-CTGGG
127 AAT-CTAGCTACCACAACCCTCGATCCGATCTGAG
* * * * * **
21057375 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATAGGCACTCAG
* * * * * * * * *
21057440 -CTGACCGAAGAGGTAAAATGCGA-AAGCCAGGGATCGGCTCGGTCTCCCT--TACGTGCTATCG
66 CCAG-CCGAAGAGGCAGAATG-AACAAGCCGGGGATAGGCCCGGTC-CCCTCCTACGTGCTGTCA
* * **
21057501 ATCTTGCTGCCGTAACCCTCGATCCGATCTGA-
128 ATCTAGCTACCACAACCCTCGATCCGATCTGAG
* *
21057533 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
21057561 TTAGACTAGG
Statistics
Matches: 882, Mismatches: 203, Indels: 152
0.71 0.16 0.12
Matches are distributed among these distances:
156 1 0.00
157 117 0.13
158 176 0.20
159 320 0.36
160 9 0.01
161 5 0.01
162 1 0.00
163 4 0.00
164 2 0.00
165 5 0.01
166 4 0.00
167 6 0.01
168 4 0.00
169 5 0.01
170 8 0.01
171 209 0.24
172 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATAGGCACTCAG
CCAGCCGAAGAGGCAGAATGAACAAGCCGGGGATAGGCCCGGTCCCCTCCTACGTGCTGTCAATC
TAGCTACCACAACCCTCGATCCGATCTGAG
Found at i:21056830 original size:317 final size:317
Alignment explanation
Indices: 21056241--21056830 Score: 704
Period size: 317 Copynumber: 1.9 Consensus size: 317
21056231 AACTCCGTAT
* * **
21056241 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACAAAATGAGCGTGTAGGCACTCAG
1 GCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACAAAATGAGCATACAGGCACTCAG
* * * * * *
21056306 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTCCTATGTGCTGTCAATC
66 CCAACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGGTCCCCTCCTACGTGCTATCAATC
* * * *
21056371 TTGCTACCACAACCCTTGGTCCGATCTGATGTTAGACTGGGAATGAACTCCGTATGCATAAGTTA
131 TTGCTACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * *
21056436 ACCCACGAAACGAGCGTATGGGCACTGAGCCGGTTGAAGAGGCATAATGAATAAGCCGGGGATAG
196 ACCCACGAAACGAGCGTACGGGCACTCAGCCGGTCGAAGAGGCATAA-GAACAAGCCGGGGATAG
*
21056501 GCCCGGTCCCCCTCTACGTGCTGCTAGTCTAGCTGCCACAACCCTCGATCTGACTAGG
260 GCCCGATCCCCCTCTACGTGCTGCTAGTCTAGCTGCCACAACCCTCGATCTGACTAGG
* * * * *
21056559 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAACA-G-GCATACGGGCGCTC
1 GCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCA-CAAA-ATGAGCATACAGGCACTC
* * * * *
21056622 AGCCAACCAGAGAGGCAGAATGCGTAAGCCGAGGTTCAGCCTGGTCCCC-CCTGCGTTCTATCGA
64 AGCCAACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGGTCCCCTCCTACGTGCTATCAA
* ** ** * * *
21056686 TCTTGCTGCTGCAACCCTCGATTTGATCTGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGT
129 TCTTGCTACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
* * * * *
21056751 CAACCCACGAAACGAGCGTGCGGGCTCTCAGTCGGTCGGAGAGGCATAA-AACGCAAGTCGGGGA
194 CAACCCACGAAACGAGCGTACGGGCACTCAGCCGGTCGAAGAGGCATAAGAA--CAAGCCGGGGA
*
21056815 TCA-GCCTGATCCCCCT
257 T-AGGCCCGATCCCCCT
21056831 TTGCATGCTA
Statistics
Matches: 224, Mismatches: 43, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
315 2 0.01
317 126 0.56
318 91 0.41
319 4 0.02
320 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACAAAATGAGCATACAGGCACTCAG
CCAACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGGTCCCCTCCTACGTGCTATCAATC
TTGCTACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
ACCCACGAAACGAGCGTACGGGCACTCAGCCGGTCGAAGAGGCATAAGAACAAGCCGGGGATAGG
CCCGATCCCCCTCTACGTGCTGCTAGTCTAGCTGCCACAACCCTCGATCTGACTAGG
Found at i:21057563 original size:26 final size:26
Alignment explanation
Indices: 21057534--21057586 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21057524 CCGATCTGAT
21057534 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
*
21057560 CTTAGACTAGGGTTGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
21057586 C
1 C
21057587 GTAAGTCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:21058294 original size:26 final size:26
Alignment explanation
Indices: 21058256--21058308 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21058246 GGCTTAAAAT
21058256 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21058282 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21058308 C
1 C
21058309 CAAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21060499 original size:159 final size:158
Alignment explanation
Indices: 21060152--21060549 Score: 388
Period size: 159 Copynumber: 2.5 Consensus size: 158
21060142 AACAGGCCGG
* * * * * * * *
21060152 AGAGGCATAATGCATAAGTTGAGGATCGGCTCGATCCTCCTCTACGTGCTACCGGTCCCACTACC
1 AGAGGCATAATGCGTAAGTTGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCCGAT-CCGCTGCC
* * *
21060217 ACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCATGTGCCTAAGCCAACCTATGA
65 ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGA
* * * * * *
21060282 AATGAGCATTCGGGTGCCGAGCTAACCGG
130 AACGAGCATGCAGGCGCCGAGCCAACCGA
* * * * *
21060311 AGAGGCATAATGCGTAA-TCCGGGGTTCGGCCCGGTCCCCCTCTGCGTGCTGCCAATCTCGCTGC
1 AGAGGCATAATGCGTAAGT-TGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCCGATC-CGCTGC
* ** * *
21060375 CACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACCCATG
64 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATG
* * ***
21060440 AAACGGGCGTGCAGGCGCTC-AGCCGGTCGA
129 AAACGAGCATGCAGGCGC-CGAGCCAACCGA
* * * * * *
21060470 AGAGGCAGAATGCGCAAGTTGGGGATCGGCTTGGTCCCCC-CTATGTGCTGTCGATCCTGCTGTC
1 AGAGGCATAATGCGTAAGTTGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCCGATCC-GCTGCC
21060534 ACAACCCTCGGTCCGA
65 ACAACCCTCGGTCCGA
21060550 TCCAATCTTA
Statistics
Matches: 189, Mismatches: 45, Indels: 11
0.77 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 33 0.17
159 153 0.81
160 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
AGAGGCATAATGCGTAAGTTGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCCGATCCGCTGCCA
CAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAA
ACGAGCATGCAGGCGCCGAGCCAACCGA
Found at i:21060585 original size:26 final size:26
Alignment explanation
Indices: 21060556--21060608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21060546 CCGATCCAAT
*
21060556 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
21060582 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
21060608 C
1 C
21060609 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:21060806 original size:26 final size:26
Alignment explanation
Indices: 21060777--21060829 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21060767 CCGATCTGAT
**
21060777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
*
21060803 CTTAGACAAGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
21060829 C
1 C
21060830 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:21061533 original size:26 final size:26
Alignment explanation
Indices: 21061497--21061549 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21061487 GTTGGCTTAG
21061497 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21061523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21061549 G
1 G
21061550 AGTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21062968 original size:26 final size:26
Alignment explanation
Indices: 21062939--21062994 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
21062929 TGGGTTGACT
21062939 TAAGCATACGAAGCTCATCCCCAGTC
1 TAAGCATACGAAGCTCATCCCCAGTC
* * *
21062965 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGCTCATCCCCAGTC
21062991 TAAG
1 TAAG
21062995 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCATACGAAGCTCATCCCCAGTC
Found at i:21063061 original size:184 final size:183
Alignment explanation
Indices: 21062650--21063132 Score: 526
Period size: 184 Copynumber: 2.6 Consensus size: 183
21062640 GCAGGACCAG
* * * *
21062650 CAGCAAGATCGGCAGCACATAGGAGGGGATCGAGCTGATCCCCGGGTTACGCATTCTACCTCTCT
1 CAGCAGGATCGGCAGCACGTAGG-GGGGAACG-GCTGATCCCCGGCTTACGCATTCTACCTCTCT
* * * * * *
21062715 GGCCGGCTGAACGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCGTA-GTAAGTTTATCCCCAG
64 GACCGGCTGAAC-CCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGTAAGCTCATCCCCAG
21062779 TCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACTGGACCGAGGGTTCCGA
128 TCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACTGGACCGAGGGTTCCGA
* * * * ** * * **
21062835 CAGTAGGATCGACAGAACGTAAGAAGGAATGGGCCGATCCCCGGCTTGTGCATTCTACCTCT-TC
1 CAGCAGGATCGGCAGCACGTAGGGGGGAA-CGGCTGATCCCCGGCTTACGCATTCTACCTCTCT-
* * *
21062899 GACCGGCTGAGCCCTCGCATGCTCGTTTCGTGGGTTGACTTAAGCATACG-AAGCTCATCCCCAG
64 GACCGGCTGAACCC-CGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGTAAGCTCATCCCCAG
* * *
21062963 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACTGGATCGAGGGTTGCGA
128 TCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGA-ACTGGACCGAGGGTTCCGA
* * * * * *
21063019 TAGCAGGATCGGCAGCACGTAGGGGGGACCAGGCTAATCCCCGACTTACGTATTCTGCCTCTCTG
1 CAGCAGGATCGGCAGCACGTAGGGGGGAAC-GGCTGATCCCCGGCTTACGCATTCTACCTCTCTG
* *
21063084 ACTTAGGCT-AATCCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATAC
65 AC--CGGCTGAA-CCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATAC
21063133 AGAGTTCATT
Statistics
Matches: 242, Mismatches: 46, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
183 4 0.02
184 179 0.74
185 52 0.21
186 7 0.03
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (183 bp):
CAGCAGGATCGGCAGCACGTAGGGGGGAACGGCTGATCCCCGGCTTACGCATTCTACCTCTCTGA
CCGGCTGAACCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGTAAGCTCATCCCCAGTCT
AAGCATACGGAGTTCATTCCCAATCTAAGATCGAACTGGACCGAGGGTTCCGA
Found at i:21063515 original size:196 final size:196
Alignment explanation
Indices: 21063199--21063554 Score: 497
Period size: 196 Copynumber: 1.8 Consensus size: 196
21063189 ACAGCACGTG
* * **
21063199 GGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCTGGCTGAGTGCCCGCATGC
1 GGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCAGCTGGCTGAGTCCCCGCACAC
* * *
21063264 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAAGGATATGGAGTTCATTCC
66 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCGATGTCTAAGCATATGGAGTTCATTCC
21063329 CAGTCTAAGATCAGA-CTAGATCGAGGGTTGCGGCAGCAGGACCAGCAGTAGGATCAACAGCATG
131 CAGTCTAAGATCAGATC-AGATCGAGGGTTGCGGCAGCAGGACCAGCAGTAGGATCAACAGCATG
21063393 CA
195 CA
* * * *
21063395 GGGGGGACTGGGGT-GATCCCCGACTTGCGTATTCTGCCTCTCC-GGTCGGCTGAG-CCCTCGTA
1 GGGGGGACT-GGGTCGATCCCCGACTTGCGCATTCTACCTCTCCAGCT-GGCTGAGTCCC-CGCA
* * *
21063457 CACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTTATCC-TTAGTCTAAGCATATGGAGTTCA
63 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCGAT-GTCTAAGCATATGGAGTTCA
*
21063521 TTCCCAGTCTAAGATCAGATCGGATCGAGGGTTG
127 TTCCCAGTCTAAGATCAGATCAGATCGAGGGTTG
21063555 TGACAGTAGG
Statistics
Matches: 140, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
195 5 0.04
196 130 0.93
197 5 0.04
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.26
Consensus pattern (196 bp):
GGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCAGCTGGCTGAGTCCCCGCACAC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCGATGTCTAAGCATATGGAGTTCATTCC
CAGTCTAAGATCAGATCAGATCGAGGGTTGCGGCAGCAGGACCAGCAGTAGGATCAACAGCATGC
A
Found at i:21063875 original size:26 final size:26
Alignment explanation
Indices: 21063823--21063875 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21063813 GTTGAATTAG
*
21063823 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
21063849 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
21063875 G
1 G
21063876 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:21064580 original size:26 final size:26
Alignment explanation
Indices: 21064544--21064596 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21064534 GTTGGCTTAG
21064544 GCATACGGAGTTCATCCCTAATCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
* *
21064570 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
21064596 G
1 G
21064597 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:21065241 original size:26 final size:26
Alignment explanation
Indices: 21065212--21065264 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21065202 GTTGACTTAG
21065212 GCATACAGAGTTCATCCCCACTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
* * *
21065238 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
21065264 G
1 G
21065265 ATCAGTCCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCACTCTAA
Found at i:21065689 original size:158 final size:157
Alignment explanation
Indices: 21065238--21065739 Score: 551
Period size: 158 Copynumber: 3.2 Consensus size: 157
21065228 CCCACTCTAA
* *
21065238 GCATACAGAGTTTATTCCCA-GTCTAAGATCAGTCCGGACCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCG-CAGTAGGATCGAC
* * * * ** * *
21065302 AGCACACAGGGGGGATCGGGTCGATCTTCGGCTTGCGCATTCTACCTTTTCGACCGGTTGAGCAC
64 AGCACACAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTTTCCGGTCGGCTGAGCGC
* * * *
21065367 CTGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCGAACACTCATTTCGTGGGTTGGCTTAG
** * * * * * ** *
21065396 GCATAGGGAGTTCATTCCATGTCTAAGCTCCGGCCAGACCGAGGGTTGTGGCAGCGGGACCGACA
1 GCATACAGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTG-CGCAGTAGGATCGACA
* * * * * * * *
21065461 GCACGCAGAGGGTGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTGCGGTCGGCTCAGCGC
65 GCACACAG-GGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTTTCCGGTCGGCTGAGCGC
* * * *
21065526 CCGAACACTCGTTACATGGGTTGACTTAG
129 CCGAACACTCATTTCGTGGGTTGGCTTAG
* *
21065555 GCATACAGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGTAGGATCGAT
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGTAGGATCGAC
* * *
21065619 AGCATATAGGGGGGACCGGGTC-AGTCCTCGGCTTACGCATTCTGCCTTTCCGGTCGGCTGAGCG
64 AGCACACAGGGGGGATCGGGTCGA-TCCTCGGCTTACGCATTCTGCCTTTCCGGTCGGCTGAGCG
21065683 CCCGAACACTCATTTCGTGGGTTGGCTTAG
128 CCCGAACACTCATTTCGTGGGTTGGCTTAG
21065713 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
21065740 CATACGGAGT
Statistics
Matches: 276, Mismatches: 61, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 4 0.01
158 152 0.55
159 120 0.43
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGCAGTAGGATCGACAG
CACACAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTTTCCGGTCGGCTGAGCGCCC
GAACACTCATTTCGTGGGTTGGCTTAG
Found at i:21065763 original size:26 final size:26
Alignment explanation
Indices: 21065713--21065765 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21065703 GTTGGCTTAG
*
21065713 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
21065739 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
21065765 G
1 G
21065766 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21065952 original size:26 final size:26
Alignment explanation
Indices: 21065907--21065959 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21065897 GTTGACTTAG
*
21065907 GCATACGGAGTTTTTCCCCAATCTAA
1 GCATACGGAGTTATTCCCCAATCTAA
*
21065933 GCATACGGAGTTCATT-CCCAGTCTAA
1 GCATACGGAGTT-ATTCCCCAATCTAA
21065959 G
1 G
21065960 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTATTCCCCAATCTAA
Found at i:21066290 original size:26 final size:25
Alignment explanation
Indices: 21066250--21066301 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
21066240 GTTGGCTTAG
*
21066250 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCA-GTCTAA
*
21066276 GCATACGGAGCTCATTCTAGTCTAA
1 GCATACGGAGCTCATTCCAGTCTAA
21066301 G
1 G
21066302 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGCTCATTCCAGTCTAA
Found at i:21067009 original size:26 final size:26
Alignment explanation
Indices: 21066969--21067021 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21066959 GTTGACTTAG
21066969 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
* * **
21066995 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
21067021 G
1 G
21067022 ATAAAATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAGTCTAA
Found at i:21067347 original size:26 final size:26
Alignment explanation
Indices: 21067311--21067363 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21067301 GTTGGCTTAG
*
21067311 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21067337 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21067363 G
1 G
21067364 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21068078 original size:26 final size:26
Alignment explanation
Indices: 21068041--21068098 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
21068031 CGTGGGTTGA
21068041 CTAAGGCATACGGAGTTCATCCCCAGT
1 CTAA-GCATACGGAGTTCATCCCCAGT
* *
21068068 CTAAGCATACGGATTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATCCCCAGT
21068094 CTAAG
1 CTAAG
21068099 ATCAGATCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATCCCCAGT
Found at i:21069145 original size:26 final size:26
Alignment explanation
Indices: 21069077--21069145 Score: 93
Period size: 26 Copynumber: 2.7 Consensus size: 26
21069067 GTTAACTTAG
** *
21069077 GCATACGGTGTTTATCCCCAGTCTAA
1 GCATACGAAGTTTATTCCCAGTCTAA
* *
21069103 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTTATTCCCAGTCTAA
21069129 GCATACGAAGTTTATTC
1 GCATACGAAGTTTATTC
21069146 TCGAATCACA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTTATTCCCAGTCTAA
Found at i:21070066 original size:26 final size:26
Alignment explanation
Indices: 21070036--21070088 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21070026 GTTGGCTTAG
*
21070036 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21070062 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21070088 G
1 G
21070089 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21070788 original size:26 final size:26
Alignment explanation
Indices: 21070758--21070810 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21070748 GTTGACTTAG
21070758 GCATACAGAATTCATCTCA-AGTCTAA
1 GCATACAGAATTCAT-TCATAGTCTAA
* *
21070784 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAATTCATTCATAGTCTAA
21070810 G
1 G
21070811 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCATAGTCTAA
Found at i:21071247 original size:26 final size:26
Alignment explanation
Indices: 21071210--21071262 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21071200 GTTGGCTTAG
21071210 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
21071236 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21071262 G
1 G
21071263 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21071453 original size:26 final size:26
Alignment explanation
Indices: 21071403--21071455 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
21071393 GTTGACTTAG
*
21071403 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
21071429 GCATAC-GAAGTTCATTCCC-AATCTAA
1 GCATACAG-AGTTCA-TCCCTAATCTAA
21071455 G
1 G
21071456 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 19 0.79
27 4 0.17
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:21071952 original size:26 final size:26
Alignment explanation
Indices: 21071902--21071954 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21071892 GTTCGCTTAG
*
21071902 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
21071928 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
21071954 G
1 G
21071955 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21072135 original size:25 final size:26
Alignment explanation
Indices: 21072100--21072151 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
21072090 GTTGACTTAG
21072100 GCATACAGAGTCCA-TCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
* *
21072125 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
21072151 G
1 G
21072152 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:21072443 original size:159 final size:160
Alignment explanation
Indices: 21072181--21072783 Score: 483
Period size: 159 Copynumber: 3.8 Consensus size: 160
21072171 TGCGATAGTA
* * * * **
21072181 GGATCGACAACACACA-AGGGGGACTGGGCCGATCCCCGGCTT-CGCATTCTGCCTCTCCGGTCG
1 GGATCGACAGCACACAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCAGACCG
** * * *
21072244 GTTGAGCACCCATACGCGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCAAGTTTAA
66 ACTGAGCACCCACACGCGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAA
* **
21072309 ATCACAGCCGGATTGAGGGTTGTGGCAACG
131 ACCACAGCCGGACCGAGGGTTGTGGCAACG
*
21072339 GGATCGATAGCACACAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCAGACCG
1 GGATCGACAGCACACAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCAGACCG
** * * * *
21072404 ACTGAGTGCCCGCACGC-CCGTTTTGTGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 ACTGAGCACCCACACGCGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAA
* * * *
21072468 GCCCCCGCCGGACCGAGGGTTGTGGCAGCG
131 ACCACAGCCGGACCGAGGGTTGTGGCAACG
* * * * * * *
21072498 GGATCGACAGCACACAGAGGGGGA-TCGGGTTGATCCCTGGCTTGCGCATTATGCCTTTCTGATC
1 GGATCGACAGCACACAGAGGGGGACT-GGGTCGATCCCCGGCTTGCGCATTCTACCTCTCAGACC
* * * * ** * * *
21072562 GGCTTAGCACCCGA-ACGC-TCATTTCGTGGAATGACTTAGGCATATGGAGTTCATTCCTAGTCT
65 GACTGAGCACCC-ACACGCGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCT
* ** * * * * *
21072625 AAGATCGGA-TCGAACCGAGGGTTGCGGCAGCA
129 AA-ACCACAGCCGGACCGAGGGTTGTGGCAACG
* * ** * * * * *
21072657 GGATCGATAGCTCGTAG-GGGGGACCGGG-CTGATCTCTGGCTTACGCATTCT-GCTCTCCAG-C
1 GGATCGACAGCACACAGAGGGGGACTGGGTC-GATCCCCGGCTTGCGCATTCTACCTCT-CAGAC
* * * ** * * *
21072718 TGACTAAGCGCCCGTACGC-TCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCT
64 CGACTGAGCACCCACACGCGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCT
21072782 AA
129 AA
21072784 GCATACAAAG
Statistics
Matches: 356, Mismatches: 80, Indels: 19
0.78 0.18 0.04
Matches are distributed among these distances:
157 57 0.16
158 44 0.12
159 226 0.63
160 29 0.08
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (160 bp):
GGATCGACAGCACACAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCAGACCG
ACTGAGCACCCACACGCGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAA
ACCACAGCCGGACCGAGGGTTGTGGCAACG
Found at i:21072942 original size:197 final size:184
Alignment explanation
Indices: 21072609--21073166 Score: 545
Period size: 197 Copynumber: 3.0 Consensus size: 184
21072599 AGGCATATGG
* * * * * * * *
21072609 AGTTCATTCCTAGTCTAAGATCGGATC-GAACCGAGGGTTGCGGCAGCAGGATCGATAGCTCGTA
1 AGTTCATTCCCAATCTAAGATAGGACCAG-ACCAAGGGTTACGGCAGCAGGATCGATAGCACGCA
* * * * *
21072673 GGGGGGACCGGGCTGAT-CTCTGGCTTACGCATTCTG-CTCTCCAGCTGACTAAGCGCCCGTACG
65 GGGGGGACCGGGCCGATCCTC-GGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACG
*
21072736 CTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACAA
129 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAA
* * * *
21072792 AGTTCATTTCGAGTCTAAGATCA-GA-CAGGACCGAGGGTTGGGGTAGCAGGACCAGCAGCAGGA
1 AGTTCATTCCCAATCTAAGAT-AGGACCA-GACCAAGGG-T----TA-C--G----GCAGCAGGA
* * * **
21072855 TCGGTAGCACACAGGGGGGGACCGGGCCAATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCGGCT
52 TCGATAGCACGCA-GGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGGCT
* * *
21072920 GAGCGCCCGTACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCA
116 GAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCA
*
21072984 TACGA
180 TACAA
*
21072989 AGTTCATTCCCAATCTAAGATAGGACCAGACCAAGGGTTACGGCAGCAGGATCGATAGTACGCAG
1 AGTTCATTCCCAATCTAAGATAGGACCAGACCAAGGGTTACGGCAGCAGGATCGATAGCACGCAG
* * * * * * * **
21073054 GAGGGATCGAGCCGATGCC-CGACTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCACACGC
66 GGGGGACCGGGCCGAT-CCTCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGC
* *
21073118 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
130 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21073167 CCTAACCGGA
Statistics
Matches: 307, Mismatches: 45, Indels: 45
0.77 0.11 0.11
Matches are distributed among these distances:
182 1 0.00
183 32 0.10
184 92 0.30
185 21 0.07
188 1 0.00
189 2 0.01
191 2 0.01
192 2 0.01
195 18 0.06
196 30 0.10
197 101 0.33
198 5 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
AGTTCATTCCCAATCTAAGATAGGACCAGACCAAGGGTTACGGCAGCAGGATCGATAGCACGCAG
GGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAA
Found at i:21072984 original size:26 final size:26
Alignment explanation
Indices: 21072955--21073007 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21072945 GTTGACTTAG
* *
21072955 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
21072981 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
21073007 G
1 G
21073008 ATAGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:21073185 original size:856 final size:857
Alignment explanation
Indices: 21071511--21073324 Score: 2059
Period size: 856 Copynumber: 2.1 Consensus size: 857
21071501 GGAGGTCGAA
** * ** *
21071511 CCGATCCCCAGCTTATGCATTCTGCCTCTCCGACCGACTGAGCGTCCGCATACCCGTTTCCTGGG
1 CCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGG
* * *
21071576 TTGGCTTAGGCATAAGGAGTTCATTCCATGTTTAAGCCCCAGCCAGACTAAGGGCTGTGGCAATG
66 TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGCTGTGGCAACG
**
21071641 GGACCAACAGCATGCAGAGGGGGACTGGACCGATCCCCGGCTTGCACATTATACCTCTCCGGCTA
131 GGACCAACAGCACACAGAGGGGGACTGGACCGATCCCCGGCTTGCACATTATACCTCTCCGGCTA
** * **
21071706 GCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
196 GCTCAGCACCCGAACGCTCATTTCATGGAATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
21071771 ATCAGAGCGGATCAAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGCGGATCGGGTCGGTCTC
261 ATCAGAGCGAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGCGGACCGGGTCGATCTC
** * ** * *
21071836 CAGCTTGTACATTCTGCCTCTCCGGTCGGTTGAGCGCCTGAACGCTCATTTCGTGGGTTCGCTTA
326 CAGCTTACACATTCTGCCTCTCCGCTCGACTAAGCGCCCGAACGCTCATTTCGTGGGTTCGCTTA
* **
21071901 GGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGATTGGA
391 GGCATACAGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAATCTAAGATCAGACAGGA
* * * * * **
21071966 CTAAGGGTTGCGACAGTAGGACCAGCAGCAGGATTGATAGAACGCTGGGAGGGACCAGGATGATC
456 CCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGATAGAACACAGGGAGGGACCAGGACAATC
* ** * * * * * * *
21072031 CCCGGCTTGTATATTCTGCCTCTTTGGTCGGTTGTAGCTCCTGCAGGCTCGTTTTATGGGTTGAC
521 CCCGGCTTGTACATTCTGCCTCTCCGGCCGGCTGTAGCGCCCGCACGCTCGTTTCATAGGTTGAC
* * * *
21072096 TTAGGCATACAGAGTCCATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
586 TTAGGCATACAGAGTCCATCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATAGGACCA
* * * * * *
21072161 GATCAAGGGTTGCGATAGTAGGATCGACAACACACAAGGGGGACTGGGCCGATCCCCGGCTTCGC
651 GACCAAGGGTTACGACAGCAGGATCGACAACACACAAGGGGGACTGAGCCGATCCCCGACTTCGC
* ** * *
21072226 ATTCTGCCTCTCCGGTCGGTTGAGCACCCATACGCGCCGTTTCGTGGGTTGGCTTAGGCATAGGG
716 ATTCTACCTCTCCGACCGGCTGAGCACCCACACGCGCCGTTTCGTGGGTTGGCTTAGGCATAGGG
* * * * * * *
21072291 AGTTTATTCCAAGTTTAAATCACAGCCGGATTGAGGGTTGTGGCAACGGGATC-GATAGCACACA
781 AGTTCATTCCAAGTCTAAAGCACAACCGGATCGAGGGTTGTGGCAACAGGACCAG-TAGCACACA
**
21072355 GAGGGGGACTGGG
845 GAGGGGGACCAGG
* * * * * * *
21072368 TCGATCCCCGGCTTGCGCATTCTACCTCTCAGACCGACTGAGTGCCCGCACGCCCGTTTTGTGGT
1 CCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGG
* * * * * *
21072433 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCGCCGGACCGAGGGTTGTGGCAGCG
66 TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGCTGTGGCAACG
* * *** * * * * * *
21072498 GGATCGACAGCACACAGAGGGGGA-TCGGGTTGATCCCTGGCTTGCGCATTATGCCT-TTCTGAT
131 GGACCAACAGCACACAGAGGGGGACT-GGACCGATCCCCGGCTTGCACATTATACCTCTCCGGCT
* * * * *
21072561 CGGCTTAGCACCCGAACGCTCATTTCGTGGAATGACTTAGGCATATGGAGTTCATTCCTAGTCTA
195 -AGCTCAGCACCCGAACGCTCATTTCATGGAATGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
21072626 AGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGATAGCTCGTAGGGGGGACCGGG-CTGAT
259 AGATCAGAGCGAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGCGGACCGGGTC-GAT
** * * * *
21072690 CTCTGGCTTACGCATTCTG-CTCTCCAGCT-GACTAAGCGCCCGTACGCTCGTTTCGTGGGTTGG
323 CTCCAGCTTACACATTCTGCCTCTCC-GCTCGACTAAGCGCCCGAACGCTCATTTCGTGGGTTCG
** * * *
21072753 CTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTTCGAGTCTAAGATCAGAC
387 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAATCTAAGATCAGAC
* * ** * * * * *
21072818 AGGACCGAGGGTTGGGGTAGCAGGACCAGCAGCAGGATCGGTAGCACACAGGGGGGGACCGGGCC
452 AGGACCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGATAGAACACAGGGAGGGACCAGGAC
* * * *
21072883 AATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTG-AGCGCCCGTACGCTCGTTTCGTAGGT
517 AATCCCCGGCTTGTACATTCTGCCTCTCCGGCCGGCTGTAGCGCCCGCACGCTCGTTTCATAGGT
* *
21072947 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATAG
582 TGACTTAGGCATACAGAGTCCAT-CCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATAG
* * ** * *
21073012 GACCAGACCAAGGGTTACGGCAGCAGGATCGATAGTACGC-AGGAGGGA-TCGAGCCGATGCCCG
646 GACCAGACCAAGGGTTACGACAGCAGGATCGACAACACACAAGG-GGGACT-GAGCCGATCCCCG
21073075 ACTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCACACGC-CCGTTTCGTGGGTTGGCTTAG
709 ACTT-CGCATTCTACCTCTCCGACCGGCTGAGCACCCACACGCGCCGTTTCGTGGGTTGGCTTAG
* * *
21073139 GCATAGGGAGTTCATTCCATGTCT-AAGCCCTAACCGGATCGAGGGTTGTGGCAGCAGGACCAGT
773 GCATAGGGAGTTCATTCCAAGTCTAAAGCAC-AACCGGATCGAGGGTTGTGGCAACAGGACCAGT
**
21073203 AGCACGTAGAGGGGGACCAGG
837 AGCACACAGAGGGGGACCAGG
* *** ** * * *
21073224 CCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGTAGGTTGAGCCCCCGCACGCTCATTTCGTGGG
1 CCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGG
*
21073289 TTGGCTTAGGCATACGGAGTTCATTCC-TAGTCTAAG
66 TTGGCTTAGGCATAAGGAGTTCATTCCAT-GTCTAAG
21073325 AGTTTGAGCC
Statistics
Matches: 785, Mismatches: 161, Indels: 23
0.81 0.17 0.02
Matches are distributed among these distances:
855 49 0.06
856 429 0.55
857 307 0.39
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (857 bp):
CCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGG
TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGCTGTGGCAACG
GGACCAACAGCACACAGAGGGGGACTGGACCGATCCCCGGCTTGCACATTATACCTCTCCGGCTA
GCTCAGCACCCGAACGCTCATTTCATGGAATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGAGCGAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGCGGACCGGGTCGATCTC
CAGCTTACACATTCTGCCTCTCCGCTCGACTAAGCGCCCGAACGCTCATTTCGTGGGTTCGCTTA
GGCATACAGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAATCTAAGATCAGACAGGA
CCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGATAGAACACAGGGAGGGACCAGGACAATC
CCCGGCTTGTACATTCTGCCTCTCCGGCCGGCTGTAGCGCCCGCACGCTCGTTTCATAGGTTGAC
TTAGGCATACAGAGTCCATCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATAGGACCA
GACCAAGGGTTACGACAGCAGGATCGACAACACACAAGGGGGACTGAGCCGATCCCCGACTTCGC
ATTCTACCTCTCCGACCGGCTGAGCACCCACACGCGCCGTTTCGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCAAGTCTAAAGCACAACCGGATCGAGGGTTGTGGCAACAGGACCAGTAGCACACAG
AGGGGGACCAGG
Found at i:21074017 original size:26 final size:26
Alignment explanation
Indices: 21073987--21074039 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21073977 GTTGACTTAG
*
21073987 GCATACTG-AGTTCATCCCCATTCTAA
1 GCATAC-GAAGTTCATCCCCAGTCTAA
*
21074013 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21074039 G
1 G
21074040 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21074598 original size:158 final size:158
Alignment explanation
Indices: 21074013--21074989 Score: 521
Period size: 158 Copynumber: 6.2 Consensus size: 158
21074003 CCCATTCTAA
* * * * *
21074013 GCATACGAAGTTCATTCCCAGTCTAAGAT-CAGACCAGACCGAGGGTTGCGATAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCCA-ACCAGACCGAGGGTTGCGACAACAAGATCGAT
* * * * * * * *
21074077 AGCACATAAGAGGGATCGGGTCGATTCTCGGCTTGCGTATTCTGCCTCTCCGGTCGACTGAGC-G
64 AGCACACAGGAGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCAG
** * *
21074141 TTCGTACGCCCATTTCATGGGTTGGCTTAG
129 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * * * *
21074171 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTACTG-CAACAAGACCTGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCCAACCAGACCGAGGGTTGC-GACAACAAGATC-GA
* * * * * * * ** *
21074235 TA-CACGCAGAGGGGGATCAGGTCGATCCCTGACTTGCGCATTAC-GCCTCTCCAACCGGTTCAG
63 TAGCACACAG-GAGGGACCAGGTCGATCCCCGGCTTGCGCATT-CTGCCTCTCCGATCGACTGAG
* * * * *
21074298 -TGCCCGAACACTCATTTCATGAGTTGACTTAG
126 CAGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * * *
21074330 GCATACGAAGTTCATTTCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGATAGCAAGATCGACA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCCAACCAGACCGAGGGTTGCGACAACAAGATCGATA
* ** ** * * * * *
21074395 GTACGTAGGAGGGACTGGGTC-AGTCCTCGGTTTGAGCATTTTGCCTCTCTGATCGACTGAGCAG
65 GCACACAGGAGGGACCAGGTCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCAG
* * * *
21074459 -TCGCACGCTCGTTTCGTGGGTTGGCTTAA
129 CCCGCACGCTCATTTCATGGGTTGGCTTAG
** *
21074488 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGGGTTGCGACAAC-AGTATC-AG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCCAACCAGACCGAGGGTTGCGACAACAAG-ATCGA-
* *
21074551 TAGCACACAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCAGCTGAGC
63 TAGCACACAGGAGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGA-CTGAGC
** *
21074615 A-CCCGCACGCTTGTTTCGTGGGTTGGCTTAG
127 AGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * * ** ** * * * *
21074646 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGATTATGGTAGCGAGACCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCCAACCAGACCGAGGGTTGCGACAACAAGATCGATA
* * * * * * * *
21074711 GCACACAGAGGGGGAAC-GGGCTGATCCCCGGCTTGCACATTATGCCTCTCCGATCGATTCAG-T
65 GCACACAG-GAGGGACCAGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCA
* * * **
21074774 GCCCGAACGCTCGTTTCGTGGGTTAACTTAG
128 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * * * ** ** * *
21074805 GCGTACAGAGTTAATTCCCAGTCTAAGAT-CAGACCGGACTGAGGGTTGTGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCCA-ACCAGACCGAGGGTTGCGACAACAAGATCGAT
* * * * * ** * * * * * *
21074869 AGCATACAGGGGGGATC-GGGCCAGTCCCAAGCTTGCACATTCTGCCTTTACGGTTGGCTGAGC-
64 AGCACACAGGAGGGACCAGGTCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCA
* * * *
21074932 TCCCGTACGCTCGTTTCATGGGTTGTCTTAG
128 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
21074963 GCATACAGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
21074990 CATACGGAGT
Statistics
Matches: 631, Mismatches: 157, Indels: 62
0.74 0.18 0.07
Matches are distributed among these distances:
157 18 0.03
158 365 0.58
159 237 0.38
160 11 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCCAACCAGACCGAGGGTTGCGACAACAAGATCGATAG
CACACAGGAGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCAGCC
CGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:21074816 original size:159 final size:158
Alignment explanation
Indices: 21074552--21074991 Score: 410
Period size: 159 Copynumber: 2.8 Consensus size: 158
21074542 CAGTATCAGT
* * * *
21074552 AGCACACAGGGGGGACCAGG-TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCAGCTGAGC
1 AGCACACAGGGGGGAACGGGCT-GATCCCCGGCTTGCACATTCTGCCTCTCCGATCGA-CTGAG-
* * * * ** * *
21074615 ACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-A
63 TCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATTCCATGTCTAAGCACCAGA
21074679 CCGGA-TCGAGGATTATGGTAGCGA-GACCGAC
128 CCGGACT-GAGGATTATGGTAG-GAGGACCGAC
* * *
21074710 AGCACACAGAGGGGGAACGGGCTGATCCCCGGCTTGCACATTATGCCTCTCCGATCGATTCAGTG
1 AGCACACAG-GGGGGAACGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGT-
* * *
21074775 CCCGAACGCTCGTTTCGTGGGTTAACTTAGGCGTACAGAGTTAATTCCCA-GTCTAAG-ATCAGA
64 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATT-CCATGTCTAAGCACCAGA
* * * *
21074838 CCGGACTGAGGGTTGTGGTAGTAGGATCGAC
128 CCGGACTGAGGATTATGGTAGGAGGACCGAC
* * * ** * * * * *
21074869 AGCATACAGGGGGGATCGGGC-CAGTCCCAAGCTTGCACATTCTGCCTTTACGGTTGGCTGAGCT
1 AGCACACAGGGGGGAACGGGCTGA-TCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAG-T
* * * *
21074933 CCCGTACGCTCGTTTCATGGGTTGTCTTAGGCATACAGAGTTTATTCCATGTCTAAGCA
64 CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATTCCATGTCTAAGCA
21074992 TACGGAGTTC
Statistics
Matches: 229, Mismatches: 41, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
157 4 0.02
158 98 0.43
159 120 0.52
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGCACACAGGGGGGAACGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGTCC
CGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATTCCATGTCTAAGCACCAGACCG
GACTGAGGATTATGGTAGGAGGACCGAC
Found at i:21074944 original size:475 final size:474
Alignment explanation
Indices: 21074010--21074989 Score: 1077
Period size: 475 Copynumber: 2.1 Consensus size: 474
21074000 ATCCCCATTC
* * * *
21074010 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAACAGGATCA
* * * * * * **
21074075 GTAGCACATAAGAGGGATCGGGTCGATTCTCGGCTTGCGTATTCTGCCTCTCCGGTCGACTGAGC
66 GTAGCACACAAGAGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
*** * *
21074140 GTTCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
131 ACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
* * * *
21074205 CGGACCGAGGGTTACTGCAACAAGACCTGCTACACGCAGAGGGGGATCAGGTCGATCCCTGACTT
196 CGGACCGAGGATTACTGCAACAAGACCTGCTACACACAGAGGGGGAACAGGTCGATCCCCGACTT
* * *
21074270 GCGCATTACGCCTCTCCAACCGGTTCAGTGCCCGAACACTCATTTCATGAGTTGACTTAGGCATA
261 GCACATTACGCCTCTCCAACCGATTCAGTGCCCGAACACTCATTTCATGAGTTAACTTAGGCATA
* *
21074335 CGAAGTTCATTTCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGATAGCAAGATCGACAGTACG
326 CGAAGTTAATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGATAGCAAGATCGACAGTACG
* * * * **
21074400 TAGGAGGGACTGGGTCAGTCCTCGGTTTGAGCATTTTGCCTCTCTGATCGACTGAGCAGTCGCAC
391 -AGGAGGGACTGGGCCAGTCCTCAGCTTGAGCATTCTGCCTCTCTGATCGACTGAGCACCCGCAC
*
21074465 GCTCGTTTCGTGGGTTGGCT
455 GCTCGTTTCATGGGTTGGCT
* * *
21074485 TAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGATCGAGGGTTGCGACAACAGTATC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAACAGGATC
* *
21074549 AGTAGCACACAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC-AGCTGA
65 AGTAGCACACAAGAGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGA-CTGA
*** *
21074613 GCACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
129 GCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * * *
21074678 ACCGGATCGAGGATTA-TGGTAGCGAGACC-GAC-AGCACACAGAGGGGGAAC-GGGCTGATCCC
194 ACCGGACCGAGGATTACT-GCAACAAGACCTG-CTA-CACACAGAGGGGGAACAGGTC-GATCCC
* * * * * * * *
21074739 CGGCTTGCACATTATGCCTCTCCGATCGATTCAGTGCCCGAACGCTCGTTTCGTGGGTTAACTTA
255 CGACTTGCACATTACGCCTCTCCAACCGATTCAGTGCCCGAACACTCATTTCATGAGTTAACTTA
* * * * * * *
21074804 GGCGTAC-AGAGTTAATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGTAGGATCGA
320 GGCATACGA-AGTTAATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGATAGCAAGATCGA
* * * * *
21074868 CAGCATAC-AGGGGGGA-TCGGGCCAGTCC-CAAGCTTGCA-CATTCTGCCTTTAC-GGTTGGCT
384 CAG--TACGAGGAGGGACT-GGGCCAGTCCTC-AGCTTG-AGCATTCTGCCTCT-CTGATCGACT
* * *
21074928 GAGCTCCCGTACGCTCGTTTCATGGGTTGTCT
443 GAGCACCCGCACGCTCGTTTCATGGGTTGGCT
* * *
21074960 TAGGCATACAGAGTTTATT-CCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG
21074990 CATACGGAGT
Statistics
Matches: 418, Mismatches: 73, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
474 14 0.03
475 399 0.95
476 2 0.00
477 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (474 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAACAGGATCA
GTAGCACACAAGAGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
ACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
CGGACCGAGGATTACTGCAACAAGACCTGCTACACACAGAGGGGGAACAGGTCGATCCCCGACTT
GCACATTACGCCTCTCCAACCGATTCAGTGCCCGAACACTCATTTCATGAGTTAACTTAGGCATA
CGAAGTTAATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGATAGCAAGATCGACAGTACG
AGGAGGGACTGGGCCAGTCCTCAGCTTGAGCATTCTGCCTCTCTGATCGACTGAGCACCCGCACG
CTCGTTTCATGGGTTGGCT
Found at i:21074993 original size:26 final size:26
Alignment explanation
Indices: 21074963--21075015 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21074953 GTTGTCTTAG
*
21074963 GCATACAGAGTTTA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
*
21074989 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
21075015 G
1 G
21075016 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:21076248 original size:26 final size:26
Alignment explanation
Indices: 21076198--21076250 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21076188 GTTGGCTTAG
*
21076198 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
21076224 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
21076250 G
1 G
21076251 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:21076909 original size:26 final size:26
Alignment explanation
Indices: 21076880--21076930 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21076870 GGCTCAAACT
21076880 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
21076906 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
21076931 ACCTAAGCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21077285 original size:26 final size:26
Alignment explanation
Indices: 21077256--21077308 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21077246 TCGGTCCGAT
21077256 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21077282 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21077308 C
1 C
21077309 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21078481 original size:26 final size:26
Alignment explanation
Indices: 21078452--21078504 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21078442 CCGATCCAAT
*
21078452 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
21078478 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21078504 C
1 C
21078505 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21078690 original size:26 final size:26
Alignment explanation
Indices: 21078661--21078713 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21078651 CCGGTCCAAT
21078661 CTTAGAC-TAGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
21078687 CTTAGACATGGAATGAACTCTATATG
1 CTTAGACATGGAATGAACTCCATATG
21078713 C
1 C
21078714 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:21078880 original size:710 final size:692
Alignment explanation
Indices: 21077231--21079253 Score: 2152
Period size: 710 Copynumber: 2.9 Consensus size: 692
21077221 TGGTCCTGCT
* *
21077231 GTCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAT
1 GTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAT
* * *
21077296 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAGCCGACTGGAGAGGCA
66 GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCA
* * * * *
21077361 GAATGCGCAAG-CTGGGAACGACCTGACTCCCCCTACGTGCTATCAATCCTGCTACTGCAACCCT
131 GAATGCGTAAGTC-GGGGACGACCTG-GTCCCCCTACGTGCTGTCGATCCTGCTACTGCAACCCT
* * * * * * **
21077425 CAGTCTGATC-GATCTTAGACTAGGAATGACCTCCGGATGCCTAAGTTAACCCACGAAACGAGCG
194 CAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCG
* * * *
21077489 TTCGGGCGTTGAGCCGGCCAGAGAGGCATAATGCGTAAGT-TAGAGATCGGCCCGGTCCTCCTCT
259 TTCGGGCGTTGAG-CGGTCAGAGAGGCATAATGCGCAAGTCGAG-GATCGACCCGGTCC-CCTCT
* * * *
21077553 GTGTGCTATCTGTCCCGTTGCCACAGCCCTCGGCCCGACTGGGGCTTAGACATGGAATGAACTCC
321 GTGTGCTATC-GTCCCGCTGCCACAGCCCTTGGTCCGGCTGGGGCTTAGACATGGAAT-AACTCC
* * * * *
21077618 CTATGCCTAAGCCAACCCATGAAACGGACGTGTGGGCACTCAG-CTGGCTGGAGAAGTAGAATGC
384 CTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTC-GGCTGGAGAGGTAGAATGC
* ** * * * * * * *
21077682 GCAAGCTGGGGATCGACCCGATCCCCTATGCGTGCTATCGATCCTGTTGTCGCAACCC-TCGATC
448 GTAAGCCAGGGATCGGCTCGGTCCCCTCTGCGTGCTATCGATCTTG-TGCCGCAACCCTTAG-TC
* * * * *
21077746 CGATCTAATCTTACACTTGGAATGAACTCCGTATGCGTAGACTGGGGATGAACTCTGTATGTCTA
511 CGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTA
* *
21077811 AGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG-C-CAACTTGAGAGGCAGAATCACAAGCCAG
576 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCACAACTCGAGAGGCAGAATCACAAGCCAG
* * * * * *
21077874 GGATCGACCCAGTCCCTCCCAGCGTGCTATCGATCCTGCTGCTGGTCCTTCT
641 GGATCGACCCAGTCCCTCCCAGCGTGCTACCGATCCTACTACTAGTCCTACA
** *
21077926 GTCGTAACCCTCGGTCTAGTCTGATCATT-GACTGGGAATGAACTCCGTATGCTTAGACATGGAA
1 GTCGTAACCCTCGGTCCGGTCCGATC-TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAA
* * * * * * *
21077990 TGAACTCCGTCTGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTTAGTCGATCGGAGAGGC
65 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGC
* ** * * * *
21078055 AGAATGCGTAAGTCGGGGACAAAAATGGTCCCCCCTGCATGCTGTCGATCCTGCTACCGCAACCA
130 AGAATGCGTAAGTCGGGGAC-GACCTGGT-CCCCCTACGTGCTGTCGATCCTGCTACTGCAACCC
*
21078120 TCAGTTCGATCCT-ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAG
193 TCAGTCCGAT-CTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAG
* * * ** *
21078184 CGTTCGAGCATTAAGTCGGTCTTAGAGGCATAATGCGCAAGTCGAGGATCGACCCGGTCCCCTTT
257 CGTTCGGGCGTTGAG-CGGTCAGAGAGGCATAATGCGCAAGTCGAGGATCGACCCGGTCCCC-TC
* * ** * * *
21078249 TATGTGCTGTCGATCCTACTGCCACAGCCCTTGATCTGGCTGTGGCTTAGACATGGAATAAGCTC
320 TGTGTGCTATCG-TCCCGCTGCCACAGCCCTTGGTCCGGCTGGGGCTTAGACATGGAATAA-CTC
* * * * * *
21078314 CCTATGCCTTAGCAAACCCACGAAACGGGCGTGCGGGTGCTCAGTCGGCCGAAGAGGCAGAATGC
383 CCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCTGGAGAGGTAGAATGC
* * * *
21078379 GTAAGCCAAGGATCGGCTCGGTCCCCTCTGCGTGTTACCGATCTTAGTGCCACAACCCTTAGTCC
448 GTAAGCCAGGGATCGGCTCGGTCCCCTCTGCGTGCTATCGATCTT-GTGCCGCAACCCTTAGTCC
*
21078444 GATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCTGTATGCCTAA
512 GATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAA
* *
21078509 GCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGTCGAAGAGGCCAATCGAAGAGGCAGAAT
577 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCA--C--A-A---C--TCG-AGAGGCAGAAT
** * * * **
21078574 GCACAAG-TTGAGGATCGGCTCGGT-CCTCCTTGCGTGCTACCGATCCTACTACTAGTCCTACA
631 -CACAAGCCAG-GGATCGACCCAGTCCCTCCCAGCGTGCTACCGATCCTACTACTAGTCCTACA
* * * *
21078636 GTCGTAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAAT
1 GTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAT
** * * *
21078701 GAACTCTATATGCCTAAGCTAACCCATGAAACGAGCGTACGGGTGCTCAGCCGACCGGAGAGGTA
66 GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCA
* * * **
21078766 GAATGCGTAAGTCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTCGATCTTGCTGTTGCAACCCT
131 GAATGCGTAAGTCGGGGA-CGACCTGGTCCCC-CTACGTGCTGTCGATCCTGCTACTGCAACCCT
* * * ***
21078831 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCATAAAACGATTA
194 CAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCG
* * * * * * *
21078896 TTCGGGTGCTGAGCTGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCTGGTCTCGCTCTG
259 TTCGGGCGTTGAGC-GGTCAGAGAGGCATAATGCGCAAGTCGAGGATCGACCCGGTC-CCCTCTG
* * *
21078961 TGTGCTATCGGTCCCGCTGCTACAACCCTTGGTCCGGCTGGGGCTT-GACATGGAATGACCTCCC
322 TGTGCTATC-GTCCCGCTGCCACAGCCCTTGGTCCGGCTGGGGCTTAGACATGGAAT-AACTCCC
* * *
21079025 TATGCCTAAGCCAACCCATC-AAACGGGCGTGCGAGCGTTCAGTCGACTGGAGAGGTAGAATGCG
385 TATGCCTAAGCCAACCCA-CGAAACGGGCGTGCGGGCGCTCAGTCGGCTGGAGAGGTAGAATGCG
* * * * * * * ** *
21079089 TAACCCAGGGACCTG-TCCGGTCCCC-CTTGCGTGCTGTCTATCCTTCTACCGCAACCCTCGGTT
449 TAAGCCAGGGATCGGCT-CGGTCCCCTC-TGCGTGCTATCGAT-CTTGTGCCGCAACCCTTAGTC
* * ** *
21079152 CGATCCGACCTTAGACTGGGAATGAACAT-CGTACACTTAGACTGGGGATGAACTCCGTATGCCT
511 CGATCCAATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCT
* *
21079216 AAGTCAACTCATGAAACGAGCGTGCGGACGCTCAGCCA
575 AAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCA
21079254 ACCAGAGAGG
Statistics
Matches: 1088, Mismatches: 199, Indels: 68
0.80 0.15 0.05
Matches are distributed among these distances:
695 128 0.12
696 48 0.04
697 329 0.30
698 7 0.01
701 1 0.00
703 1 0.00
704 1 0.00
707 1 0.00
708 2 0.00
709 210 0.19
710 340 0.31
711 20 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (692 bp):
GTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAT
GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCA
GAATGCGTAAGTCGGGGACGACCTGGTCCCCCTACGTGCTGTCGATCCTGCTACTGCAACCCTCA
GTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGTT
CGGGCGTTGAGCGGTCAGAGAGGCATAATGCGCAAGTCGAGGATCGACCCGGTCCCCTCTGTGTG
CTATCGTCCCGCTGCCACAGCCCTTGGTCCGGCTGGGGCTTAGACATGGAATAACTCCCTATGCC
TAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCTGGAGAGGTAGAATGCGTAAGCCA
GGGATCGGCTCGGTCCCCTCTGCGTGCTATCGATCTTGTGCCGCAACCCTTAGTCCGATCCAATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCA
TGAAACGAGCGTGCGGGCGCTCAGCCACAACTCGAGAGGCAGAATCACAAGCCAGGGATCGACCC
AGTCCCTCCCAGCGTGCTACCGATCCTACTACTAGTCCTACA
Found at i:21079016 original size:158 final size:157
Alignment explanation
Indices: 21078686--21079049 Score: 374
Period size: 158 Copynumber: 2.3 Consensus size: 157
21078676 AACTCCATAT
* *
21078686 GCTTAGACATGGAATGAACTCTATATGCCTAAGCTAACCCATGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGC-AACCCATAAAACGAGCATACGGGTGCTCAG
* * * * * * *
21078751 CCGACCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTCGATCT
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCTCTACGTGCTATCGATCC
* * *
21078816 TGCTGTTGCAACCCTCGGTCCGGTCTGA
130 CGCTGCTACAACCCTCGGTCCGGTCTGA
* ** * *
21078844 TCTTAGAC-TGGGAATGAACTCTATATGCCTAAGTCAACCCATAAAACGATTATTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCTATATGCCTAAG-CAACCCATAAAACGAGCATACGGGTGCTCA
* * * * * ** *
21078908 GCTGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCTGGTCTCGCTCTGTGTGCTATCGGT
64 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTC-CCCTCTACGTGCTATCGAT
* *
21078973 CCCGCTGCTACAACCCTTGGTCCGG-CTGGG
128 CCCGCTGCTACAACCCTCGGTCCGGTCT-GA
* ** *
21079003 GCTT-GACATGGAATGACCTCCCTATGCCTAAGCCAACCCATCAAACG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAG-CAACCCATAAAACG
21079050 GGCGTGCGAG
Statistics
Matches: 168, Mismatches: 33, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
157 1 0.01
158 127 0.76
159 40 0.24
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCTATATGCCTAAGCAACCCATAAAACGAGCATACGGGTGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCTCTACGTGCTATCGATCCC
GCTGCTACAACCCTCGGTCCGGTCTGA
Found at i:21079933 original size:26 final size:26
Alignment explanation
Indices: 21079895--21079947 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21079885 GGCTCAAACT
**
21079895 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
21079921 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
21079947 C
1 C
21079948 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:21080274 original size:26 final size:26
Alignment explanation
Indices: 21080238--21080290 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21080228 CTGGTTCGAT
*
21080238 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21080264 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21080290 C
1 C
21080291 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21080471 original size:26 final size:26
Alignment explanation
Indices: 21080435--21080487 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21080425 GCGGTCTGAT
21080435 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21080461 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21080487 C
1 C
21080488 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21080963 original size:26 final size:26
Alignment explanation
Indices: 21080934--21080986 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21080924 CCGATTCGAT
21080934 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
** *
21080960 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
21080986 C
1 C
21080987 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:21081168 original size:25 final size:26
Alignment explanation
Indices: 21081131--21081182 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
21081121 CTGATCTGAT
*
21081131 CTTAGACTGGGAATGAAC-CCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21081156 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
21081182 C
1 C
21081183 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21082677 original size:158 final size:158
Alignment explanation
Indices: 21082355--21082698 Score: 350
Period size: 158 Copynumber: 2.2 Consensus size: 158
21082345 AACTCTGTAT
** * ** * * *
21082355 GCTTAGACATAAAATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAACGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAACGTCCGGGCGCTCAG
* * * * ** * * *
21082420 CTGATCGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCTTAGTCCCACTCTATGTGCTACCAATC
66 CCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAATCCCACCCTACGTGCTACCAATC
* ** *
21082485 CTGCCACCACAACCCTTGGTCCGGCTGG
131 CTACCACCACAACCCTCAGTCCGGCTGA
* * * **
21082513 GGTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTCCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAACGTCCGGGCGCTCAG
* * **
21082578 CCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAATCCC-CCCTGCGTGCTACTGATC
66 CCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAATCCCACCCTACGTGCTACCAATC
** *
21082642 CTACTGCCACAACCCTCAGTCCGATCTGA
131 CTACCACCACAACCCTCAGTCCG-GCTGA
*
21082671 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
21082699 TTAGACTGGG
Statistics
Matches: 149, Mismatches: 35, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
157 32 0.21
158 117 0.79
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAACGTCCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAATCCCACCCTACGTGCTACCAATC
CTACCACCACAACCCTCAGTCCGGCTGA
Found at i:21082708 original size:26 final size:26
Alignment explanation
Indices: 21082672--21082724 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21082662 CCGATCTGAT
21082672 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21082698 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21082724 C
1 C
21082725 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21083570 original size:26 final size:26
Alignment explanation
Indices: 21083541--21083593 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21083531 TTGGTCCGAT
* *
21083541 CTTAGAC-TAGGAATGTACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
21083567 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
21083593 C
1 C
21083594 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:21083868 original size:159 final size:158
Alignment explanation
Indices: 21083567--21084069 Score: 387
Period size: 159 Copynumber: 3.2 Consensus size: 158
21083557 ACTCCGTATG
** * * *
21083567 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCGT-TCA
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGC-TCTCA
* * **** * * ** **
21083630 GCCTG-CCGGAGAGGTAGAATGTTGAAGTCAGAGA-CTG-GCCCGATCTCTTCCTGCGTGCTATC
64 GCC-GACCGGAGAGGCAAAATACACAAGCCAGGGATC-GAG-CCGATC-CCCCCTGCGTGCTGCC
* * *
21083692 GATCCTACTATCGCAACCCTTGGTCCGATCTGAT
125 GATCCTGCTACCACAACCCTTGGTCCGATCTGAT
* * * *
21083726 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGG-TGTTGAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCT-CTCAG
* * * * ** * *
21083790 CCGACCGGAGAGGCATAATACGCAAGTCGGGGATCGA-CTCGATCCCATTCTGCGTGCTGTCGGT
65 CCGACCGGAGAGGCAAAATACACAAGCCAGGGATCGAGC-CGATCCC-CCCTGCGTGCTGCCGAT
* * * * **
21083854 -CTCGCTGCCACAACCCTCGATCC-AGCTGGGG
128 CCT-GCTACCACAACCCTTGGTCCGATCT-GAT
** * *
21083885 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCTCTCAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCTCTCAG
* *
21083949 CCGACCGGAGAGGCAAAATGCATAAGCCAGGGATCGAGCCGATCCCCCCTGCGTGCTGCCGATCC
65 CCGACCGGAGAGGCAAAATACACAAGCCAGGGATCGAGCCGATCCCCCCTGCGTGCTGCCGATCC
* * **
21084014 TGCTATCGCAACCCTTGGTCCGATCCAAT
130 TGCTACCACAACCCTTGGTCCGATCTGAT
*
21084043 CTTAGACTGGGTATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCTGTATGC
21084070 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 59, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
157 2 0.01
158 59 0.22
159 204 0.76
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCTCTCAGC
CGACCGGAGAGGCAAAATACACAAGCCAGGGATCGAGCCGATCCCCCCTGCGTGCTGCCGATCCT
GCTACCACAACCCTTGGTCCGATCTGAT
Found at i:21084079 original size:26 final size:26
Alignment explanation
Indices: 21084043--21084095 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21084033 CCGATCCAAT
*
21084043 CTTAGACTGGGTATGAAC-TCTGTATG
1 CTTAGACTGGGGATGAACTTC-GTATG
21084069 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTTCGTATG
21084095 C
1 C
21084096 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTTCGTATG
Found at i:21085122 original size:26 final size:26
Alignment explanation
Indices: 21085081--21085133 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21085071 CCGATCCGAT
* *
21085081 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21085107 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
21085133 C
1 C
21085134 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21085305 original size:26 final size:26
Alignment explanation
Indices: 21085276--21085328 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21085266 CCGGTCTGAT
21085276 CTTAGAC-TGGGAATGAACTCTGCATG
1 CTTAGACAT-GGAATGAACTCTGCATG
*
21085302 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGCATG
21085328 C
1 C
21085329 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGCATG
Found at i:21085828 original size:26 final size:26
Alignment explanation
Indices: 21085777--21085829 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21085767 CTGATTCGAT
* *
21085777 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
21085803 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
21085829 C
1 C
21085830 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21086021 original size:25 final size:26
Alignment explanation
Indices: 21085993--21086043 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21085983 ATGGTCTGAT
*
21085993 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21086018 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21086044 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21086169 original size:215 final size:216
Alignment explanation
Indices: 21085774--21086203 Score: 621
Period size: 215 Copynumber: 2.0 Consensus size: 216
21085764 GGTCTGATTC
21085774 GATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAA
* * ** * * * * *
21085839 CTCATGAAACGAGCGTGCGGATGCTCAGTCGACCAGAGAGGTAGGATGCGTAAGCCGAGGATCGA
66 CCCATGAAACGAGCGTACGGACACTCAGCCGACCAGAGAGGCAAGATGAGCAAGCCGAGGATCGA
* **
21085904 ACGAGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACCGTGCCAATGCCATTTTTATGGCT
131 ACGAGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCACGCCAATGCCATTTTTATGGCT
21085969 TGTAAATTCATACAATGGTCT
196 TGTAAATTCATACAATGGTCT
* * *
21085990 GATCTTAGACT-GGAATGAAC-TCTGTATGCTTAGACTGGGGATGAACTCCGTATGGCTAAGTCA
1 GATCTTAGACTAGGAATGAACTTC-GTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCA
* * * *
21086053 ACCCATGAAATGAGTGTACGGACACTCAGCCGACCAGAGAGGCAAGATGAGCAAGTCGGGGATCG
65 ACCCATGAAACGAGCGTACGGACACTCAGCCGACCAGAGAGGCAAGATGAGCAAGCCGAGGATCG
* * * *
21086118 AACGGGTGGTAGGTTGGTTCAAGCACATCTTCATATTTTTGCCACGCCAATGCCATTTTTATGGC
130 AACGAGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCACGCCAATGCCATTTTTATGGC
*
21086183 TTGTAAATTCATATAATGGTC
195 TTGTAAATTCATACAATGGTC
21086204 CCCTAAGCCT
Statistics
Matches: 189, Mismatches: 24, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
214 2 0.01
215 176 0.93
216 11 0.06
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (216 bp):
GATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAA
CCCATGAAACGAGCGTACGGACACTCAGCCGACCAGAGAGGCAAGATGAGCAAGCCGAGGATCGA
ACGAGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCACGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCT
Found at i:21086753 original size:26 final size:26
Alignment explanation
Indices: 21086716--21086766 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21086706 GCTCAAACTC
21086716 TTAGACTAGGAATGAACTCCGTATGT
1 TTAGACTAGGAATGAACTCCGTATGT
21086742 TTAGAC-ATGGAATGAACTCCGTATG
1 TTAGACTA-GGAATGAACTCCGTATG
21086767 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGT
Found at i:21087430 original size:26 final size:26
Alignment explanation
Indices: 21087401--21087453 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21087391 CCAGTCCGAT
21087401 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21087427 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21087453 C
1 C
21087454 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21087505 original size:343 final size:343
Alignment explanation
Indices: 21086714--21087527 Score: 1003
Period size: 343 Copynumber: 2.4 Consensus size: 343
21086704 TGGCTCAAAC
* * *
21086714 TCTTAGACTAGGAATGAACTCCGTATGTTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
21086778 CCACAAAACGAGCATACGGGCACTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCTG-
65 CCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GA
* * * *
21086842 CCCGGTGCCCCTCTACGTGCTGTCGATCCCGCTGCCACAACCCTTGATCTAGCTGGGGCTTAGAC
129 CCCAGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAACCCTGGATCGAGCTGGGGCTTAGAC
* *
21086907 ACGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGGGCGAGCGGGCACTCAGTCAGCCGG
194 ACGGAATGAAATCCCTATGCCCAAGCCAACCCACAAAACGGGCGAGCGGGCACTCAGCCAGCCGG
*
21086972 AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAATCCCCCTTACGTGCTACCGATCCTATTGTCG
259 AGAGGCAAAATGCGCAAGCCAGGGATCGGCCCAATCCCCCTTACGTGCTACCGATCCTATTGTCG
*
21087037 CAACCCTCAATCCGATCTGA
324 CAACCCTCAATCCGATCCGA
* * * * *
21087057 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATCTACCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
21087122 TACGAAACGAGCGTGTGGGCGCTGAGTCGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCGACC
66 CACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC
* * * *
21087187 CAGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTTCGA-CTGGGGCTTAGACA
131 CAGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAACCCT-GGATCGAGCTGGGGCTTAGACA
* * * * * *
21087251 TGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAA-GGGTGTGCGGGCGCTCAGCC-GACCGG
195 CGGAATGAAATCCCTATGCCCAAGCCAACCCACAAAACGGGCGAGCGGGCACTCAGCCAG-CCGG
* ** * * *
21087314 CGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCAACCCC-TACGTGCTGCCGATCCTGTTGT
259 AGAGGCAAAATGCGCAAGCCAGGGATCGGCCCAATC--CCCCTTACGTGCTACCGATCCTATTGT
**
21087378 CGCAACCCTCGGTCC-AGTCCGA
322 CGCAACCCTCAATCCGA-TCCGA
*
21087400 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * ** * *
21087465 CATAAAATGAGTGTGCGGACGCTCAGCCGACCAAAGAGGCAGGATGCGTAAGCCGGGGATCGA
66 CACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
21087528 ACGGGTGGTA
Statistics
Matches: 396, Mismatches: 68, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
341 1 0.00
342 54 0.14
343 333 0.84
344 8 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (343 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC
CAGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAACCCTGGATCGAGCTGGGGCTTAGACAC
GGAATGAAATCCCTATGCCCAAGCCAACCCACAAAACGGGCGAGCGGGCACTCAGCCAGCCGGAG
AGGCAAAATGCGCAAGCCAGGGATCGGCCCAATCCCCCTTACGTGCTACCGATCCTATTGTCGCA
ACCCTCAATCCGATCCGA
Found at i:21088494 original size:26 final size:26
Alignment explanation
Indices: 21088465--21088517 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21088455 CCGATCTGAT
*
21088465 CTTAGACTGAGAATGAGCTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
21088491 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
21088517 C
1 C
21088518 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:21088690 original size:26 final size:26
Alignment explanation
Indices: 21088661--21088713 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21088651 CCGGTCTGAT
*
21088661 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
*
21088687 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
21088713 C
1 C
21088714 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:21090249 original size:26 final size:26
Alignment explanation
Indices: 21090198--21090250 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21090188 CTGGTCGGAT
*
21090198 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
21090224 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
21090250 C
1 C
21090251 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21091658 original size:26 final size:26
Alignment explanation
Indices: 21091618--21091670 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21091608 GGCTCAAACT
21091618 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21091644 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
21091670 C
1 C
21091671 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21092723 original size:26 final size:26
Alignment explanation
Indices: 21092685--21092737 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21092675 GGCTTAAACT
21092685 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21092711 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21092737 C
1 C
21092738 CTAAGCCAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21093421 original size:26 final size:26
Alignment explanation
Indices: 21093383--21093435 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21093373 CCAATCTGAT
21093383 CTTAGACTGGGAATGAACACCCTATG
1 CTTAGACTGGGAATGAACACCCTATG
* *
21093409 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACACCCTATG
21093435 C
1 C
21093436 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCCTATG
Found at i:21093924 original size:26 final size:26
Alignment explanation
Indices: 21093886--21093938 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21093876 GGCTCAAATT
21093886 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
21093912 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
21093938 C
1 C
21093939 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:21094214 original size:158 final size:158
Alignment explanation
Indices: 21093911--21094203 Score: 349
Period size: 158 Copynumber: 1.9 Consensus size: 158
21093901 AACTCCATAT
* * * *
21093911 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCATGCGAGAGCTTAG
1 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACGAGAGCTCAG
* * * *
21093976 CCAGTCGGAAAGGCAAAATGCGTAAGCCGGGAATCGACTAGGTCCCCCCTGCATGCTGTCGATCC
66 CCAGTCGGAAAGGCAAAATGCATAAGCAGGGAATCGACCAGGTCCCCCCTGCATGCTGCCGATCC
*
21094041 CACTGCCACAACCCTCGGTCTAGCTGTG
131 CACTACCACAACCCTCGGTCTAGCTGTG
* * * * *
21094069 GCTTAAACATGGAATGAATTCCCTATGCCTAAGCCAACCGACGAAATGGGCGTACGGGCGCTCAG
1 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACGAGAGCTCAG
* * * * * *
21094134 CTAG-CTGGAGAGGCAAAATGTATAAGTCAGGG-ATAGGCCCA-GTCCCCCCTGCGTGCTGCCGA
66 CCAGTC-GGAAAGGCAAAATGCATAAG-CAGGGAAT-CGACCAGGTCCCCCCTGCATGCTGCCGA
*
21094196 TCCTACTA
128 TCCCACTA
21094204 TCGTAACCCT
Statistics
Matches: 111, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 103 0.93
159 7 0.06
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACGAGAGCTCAG
CCAGTCGGAAAGGCAAAATGCATAAGCAGGGAATCGACCAGGTCCCCCCTGCATGCTGCCGATCC
CACTACCACAACCCTCGGTCTAGCTGTG
Found at i:21094257 original size:26 final size:26
Alignment explanation
Indices: 21094228--21094280 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21094218 CCGGTCCGAT
21094228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
21094254 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21094280 C
1 C
21094281 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21094463 original size:26 final size:26
Alignment explanation
Indices: 21094425--21094480 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
21094415 CTGGTCTGAT
*
21094425 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
21094451 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
21094477 CTTA
1 CTTA
21094481 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:21094639 original size:26 final size:26
Alignment explanation
Indices: 21094610--21094662 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21094600 CCGATTTGAT
21094610 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21094636 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21094662 C
1 C
21094663 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21094759 original size:185 final size:185
Alignment explanation
Indices: 21094421--21094761 Score: 461
Period size: 185 Copynumber: 1.8 Consensus size: 185
21094411 CGATCTGGTC
*
21094421 TGATCTTAGACCGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCA
1 TGATCTTAGACCGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * * * *
21094486 ACCCACGAAATGAGTGTGTGGTAACTCAGCCGGTCGAAGAGGAAGAATGCGCAAGCTAGGGATCA
66 AACCACGAAACGAGCGTACGGTAAATCAACCGATCGAAGAGGAAGAATACGCAAGCTAGGGATCA
* *
21094551 GCCCGGTCCCTCACTGTGTACTGTCGATCCTACTGCCGCAACCCTCGATCCGATT
131 GCCCGGTCCCCCACTGCGTACTGTCGATCCTACTGCCGCAACCCTCGATCCGATT
*
21094606 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 TGATCTTAGACCGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * *
21094671 AACCAC-AGAACGAGCGTACGG-ACAATCAACTGATCGGAGAGGTAGAATACGCAAGCTGGGGAT
66 AACCACGA-AACGAGCGTACGGTA-AATCAACCGATCGAAGAGGAAGAATACGCAAGCTAGGGAT
** * *
21094734 TGGCCTGGTCCCCCTCTGCGTACTGTCG
129 CAGCCCGGTCCCCCACTGCGTACTGTCG
21094762 GTCCCGCAGC
Statistics
Matches: 133, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
184 2 0.02
185 131 0.98
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.22
Consensus pattern (185 bp):
TGATCTTAGACCGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
AACCACGAAACGAGCGTACGGTAAATCAACCGATCGAAGAGGAAGAATACGCAAGCTAGGGATCA
GCCCGGTCCCCCACTGCGTACTGTCGATCCTACTGCCGCAACCCTCGATCCGATT
Found at i:21094801 original size:185 final size:185
Alignment explanation
Indices: 21094425--21094821 Score: 442
Period size: 185 Copynumber: 2.1 Consensus size: 185
21094415 CTGGTCTGAT
* * *
21094425 CTTAGACCGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACC
* * ** * * * *
21094490 ACGAAATGAGTGTGTGGTAACTCAGCCGGTCGAAGAGGAAGAATGCGCAAGCTAGGGATCAGCCC
66 ACGAAACGAGCGTACGGTAAATCAACCGATCGAAGAGGAAGAATACGCAAGCTAGGGATCAGCCC
* * * * * * * *
21094555 GGTCCCTCACTGTGTACTGTCGATCCTACTGCCGCAACCCTCGATCCGATTTGAT
131 GGTCCCCCACTGCGTACTGTCGATCCCACAGCCACAACCCTCGATCCGACTGGAG
21094610 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACC
* * * * **
21094675 AC-AGAACGAGCGTACGG-ACAATCAACTGATCGGAGAGGTAGAATACGCAAGCTGGGGATTGGC
66 ACGA-AACGAGCGTACGGTA-AATCAACCGATCGAAGAGGAAGAATACGCAAGCTAGGGATCAGC
* * * * * * *
21094738 CTGGTCCCCCTCTGCGTACTGTCGGTCCCGCAGCCACAACCCTCGGTTCGACTGGGG
129 CCGGTCCCCCACTGCGTACTGTCGATCCCACAGCCACAACCCTCGATCCGACTGGAG
21094795 CTTAGACAT-GGAATGAACTTCC-TATGC
1 CTTAGAC-TGGGAATGAAC-TCCGTATGC
21094822 CTAAGCCAAC
Statistics
Matches: 176, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
184 2 0.01
185 170 0.97
186 4 0.02
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACC
ACGAAACGAGCGTACGGTAAATCAACCGATCGAAGAGGAAGAATACGCAAGCTAGGGATCAGCCC
GGTCCCCCACTGCGTACTGTCGATCCCACAGCCACAACCCTCGATCCGACTGGAG
Found at i:21095598 original size:26 final size:26
Alignment explanation
Indices: 21095569--21095619 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
21095559 CCGGTCTGAT
21095569 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21095595 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
21095620 TCTGAATCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21095702 original size:407 final size:406
Alignment explanation
Indices: 21094921--21095705 Score: 952
Period size: 407 Copynumber: 1.9 Consensus size: 406
21094911 GTCCTATTGA
* * *
21094921 TCCTACTACCGTAACCCCCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
1 TCCTACTACAGTAACCCCCGATCCAATCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGAC
* * * *
21094986 TGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGA
66 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTACGGGTGCTCAGTCGATCGA
* * * * * **
21095051 AGAGGCCGGTCGGAGAGGTAGAATGCGTAAGCTAGGGATCGACCCGGACCCCCCGACGTGCTGCT
131 AGAGGCCGCTCGGAGAGGCAAAATGCGCAAGCGAGGGATCGACCCGGACCCCCCGACGTGCCACT
* * *
21095116 GATCCTGCTGCTGGTCCTGCTGTCGTAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACT
196 GATACTGCTACTGATCCTGCTGTCGTAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACT
** * * * *
21095181 TTGTATGCTTGGATATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGT
261 CCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGT
* * * *
21095246 GCTCAACCGGCCGGAAAGGCAGAACACACAAGCTGGGGATCGGCCCGATCCCCTCTTGCGTGCTG
326 GCTCAACCGACCGAAAAGGCAGAACACACAAGCCGGGGATCGACCCGATCCCCTCTTGCGTGCTG
21095311 TCGATCCTGCTGCTGG
391 TCGATCCTGCTGCTGG
* * * *
21095327 TCCTACTACAGTAACCCTCGATCCAATCCGATCTTAGACTGGAAATGAACTTCGTATGCTTTGAC
1 TCCTACTACAGTAACCCCCGATCCAATCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGAC
* * * **
21095392 TGGGGATGAACTCCGTATGGCTAAGTCAACCCATAAAACAAGCTTACGGGTGCTTGGTCGATC-A
66 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTACGGGTGCTCAGTCGATCGA
* * ** * * * *
21095456 GAGAGGCTGACT-GGAGAGGCAAAATGTGCAAGTCGA-GGATCGGTCGGGTCTCACCCTG-TGTG
131 -AGAGGCCG-CTCGGAGAGGCAAAATGCGCAAG-CGAGGGATCGACCCGGAC-C-CCCCGACGTG
* * *
21095518 CCACTGATACTGCTACTGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGAC-ATGGAA
191 CCACTGATACTGCTACTGATCCTGCTGTCGTAACCCTCGATCCGATCCGATCTTAGACTA-GGAA
* *
21095582 TGAACTCCGTATGCTTAGACATGGAATGAACTCCGTAT-TCTGAATCCAACCCACGAAATGAGCG
255 TGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCT-AAGCCAACCCACGAAATGAGCG
* * * * ** **
21095646 TGCGGGTGCTCAGCCGATCGAAAAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCCCC
319 TGCAGGTGCTCAACCGACCGAAAAGGCAGAACACACAAGCCGGGGATCGACCCGATCCCC
21095706 CCTACATGCT
Statistics
Matches: 315, Mismatches: 57, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
405 1 0.00
406 148 0.47
407 162 0.51
408 4 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (406 bp):
TCCTACTACAGTAACCCCCGATCCAATCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGAC
TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTACGGGTGCTCAGTCGATCGA
AGAGGCCGCTCGGAGAGGCAAAATGCGCAAGCGAGGGATCGACCCGGACCCCCCGACGTGCCACT
GATACTGCTACTGATCCTGCTGTCGTAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACT
CCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGT
GCTCAACCGACCGAAAAGGCAGAACACACAAGCCGGGGATCGACCCGATCCCCTCTTGCGTGCTG
TCGATCCTGCTGCTGG
Found at i:21095723 original size:406 final size:400
Alignment explanation
Indices: 21094794--21095725 Score: 994
Period size: 406 Copynumber: 2.3 Consensus size: 400
21094784 TTCGACTGGG
* * *
21094794 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCATGAAA-CAGGCGTACGGGTGCTC
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGTGCTC
* * * *
21094857 AGCCGGTTGGAAAGGTAGATTGCGTAAGCCGGGGATCGACCCGGT--CACC-C--CTA-CG-TCC
64 AGCCGGTCGGAAAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTCTGCTATCGATCC
* * *
21094915 TATTGATCCTACTACCGTAACCCCCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGC
129 TATTGATCCTACTACAGTAACCCCCGATCCAATCCGATCTTAGACTGGAAATGAACTCCATATGC
* * * *
21094980 TTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTC
194 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTACGGGTGCTCAGTC
* * * * *
21095045 GATCGAAGAGGCCGGTCGGAGAGGTAGAATGCGTAAGCTAGGGATCGACCCGGACCCCCCGACGT
259 GATCGAAGAGGCCGCTCGGAGAGGCAAAATGCGCAAGCGAGGGATCGACCCGGACCCCCCGACGT
** * * *
21095110 GCTGCTGATCCTGCTGCTGGTCCTGCTGTCGTAACCCTCGATCCGATCCGATCTTAGACTAGGAA
324 GCCACTGATACTGCTACTGATCCTGCTGTCGTAACCCTCGATCCGATCCGATCTTAGACTAGGAA
**
21095175 TGAACTTTGTAT
389 TGAACTCCGTAT
* * * * * *
21095187 GCTTGGATATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * ** ** * * * *
21095252 CCGGCCGGAAAGGCAGAACACACAAGCTGGGGATCGGCCCGATCCCCTCTTGCGTGCTGTCGATC
66 CCGGTCGGAAAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCCCC-CCT-C-TGCTATCGATC
* * * * *
21095317 CTGCTGCTGGTCCTACTACAGTAACCCTCGATCCAATCCGATCTTAGACTGGAAATGAACTTCGT
128 CT-AT--TGATCCTACTACAGTAACCCCCGATCCAATCCGATCTTAGACTGGAAATGAACTCCAT
* * * * *
21095382 ATGCTTTGACTGGGGATGAACTCCGTATGGCTAAGTCAACCCATAAAACAAGCTTACGGGTGCTT
190 ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTACGGGTGCTC
* * * ** * *
21095447 GGTCGATC-AGAGAGGCTGACT-GGAGAGGCAAAATGTGCAAGTCGA-GGATCGGTCGGGTCTCA
255 AGTCGATCGA-AGAGGCCG-CTCGGAGAGGCAAAATGCGCAAG-CGAGGGATCGACCCGGAC-C-
* * * * *
21095509 CCCTG-TGTGCCACTGATACTGCTACTGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTA
315 CCCCGACGTGCCACTGATACTGCTACTGATCCTGCTGTCGTAACCCTCGATCCGATCCGATCTTA
21095573 GAC-ATGGAATGAACTCCGTAT
380 GACTA-GGAATGAACTCCGTAT
* *
21095594 GCTTAGACATGGAATGAACTCCGTAT-TCTGAATCCAACCCACGAAATGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCT-AAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
* *
21095658 GCCGATCGAAAAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTACATGCTATCGATC
65 GCCGGTCGGAAAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCT-C-TGCTATCGATC
21095723 CTA
128 CTA
21095726 CTGTCGTAAC
Statistics
Matches: 430, Mismatches: 87, Indels: 32
0.78 0.16 0.06
Matches are distributed among these distances:
392 2 0.00
393 83 0.19
394 1 0.00
395 1 0.00
396 1 0.00
398 1 0.00
401 2 0.00
402 2 0.00
403 4 0.01
404 1 0.00
405 1 0.00
406 165 0.38
407 162 0.38
408 4 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (400 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
CCGGTCGGAAAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTCTGCTATCGATCCTA
TTGATCCTACTACAGTAACCCCCGATCCAATCCGATCTTAGACTGGAAATGAACTCCATATGCTT
AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTACGGGTGCTCAGTCGA
TCGAAGAGGCCGCTCGGAGAGGCAAAATGCGCAAGCGAGGGATCGACCCGGACCCCCCGACGTGC
CACTGATACTGCTACTGATCCTGCTGTCGTAACCCTCGATCCGATCCGATCTTAGACTAGGAATG
AACTCCGTAT
Found at i:21096401 original size:26 final size:26
Alignment explanation
Indices: 21096360--21096412 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21096350 CTGATCTGAT
*
21096360 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
21096386 CTTAGACTAAGG-ATGAACACCGTATG
1 CTTAGACT-AGGAATGAACACCGTATG
21096412 C
1 C
21096413 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:21097455 original size:26 final size:26
Alignment explanation
Indices: 21097414--21097466 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21097404 CCGATCTGAT
21097414 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
21097440 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21097466 C
1 C
21097467 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21097870 original size:343 final size:342
Alignment explanation
Indices: 21097071--21097903 Score: 862
Period size: 343 Copynumber: 2.4 Consensus size: 342
21097061 TGGCTCAAAC
* * * * *
21097071 TCTTAGACTGGGAAAGAACTCCATATGCTTAGACAT-GGAATTAACTCCGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
21097135 CCACGAAATGAGCATGCGGGCACTCAGCCG-GT--CGGAGGGTAGAATGCGCAAGCTGGGGATCG
65 CCATGAAATGAGCGTAC-GGCGCTCAGCCGCCTAAC-GA-GGCAGAATGCGTAAGCTGGGGATTG
* * * **
21097197 GCTCGGTCCCCCTCTGCATGCTGCCGATCCCACTGCCACAACCCTTAGTCTGGCTGGGGCTCAGA
127 CCTCAGTCCCCCTCTGCATGCTGCCGAGCCCACTGCCACAACCCTTAGTCCAGCTGGGGCTCAGA
* ** * * * * ** *
21097262 TATGGAATGATTTCCCTCTGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCATTCGATCG
192 CATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACGGGCGTCCGGGCGCTCAACCGACCG
* * * * *
21097327 AAGAGGAAGAATGCGCAAGCCATGGATCGGCTCGATCCCTCCTGAGTGCTACTGATCCTGCTACC
257 AAGAGGAAGAATACGCAAGCCAGGGATCAGCCCGATCCCTCCTGAGTGCTACCGATCCTGCTACC
* **
21097392 GTAACCCTTGGCCCGATCTGA
322 GCAACCCTCAGCCCGATCTGA
* *
21097413 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* * * ** *
21097478 CATGAAACGAGCGTACAGGCGCTTAGTCAGCC-AAATAGGCATAATGCGTAAGCTGGGGATTGAC
66 CATGAAATGAGCGTAC-GGCGCTCAG-CCGCCTAACGAGGCAGAATGCGTAAGCTGGGGATTG-C
* * * *
21097542 CT-AGTCCCCTTCTGCATGCTGCC-AGGCCCGCTGCCACAACCCTTGGTCCAGCTGGGGCTTAGA
128 CTCAGTCCCCCTCTGCATGCTGCCGA-GCCCACTGCCACAACCCTTAGTCCAGCTGGGGCTCAGA
*
21097605 CATGGAATGAACTCGCC-ATGCCTAAGACAACCCACGAAACGGGCGTCCGGGCGCTCAACCGGCC
192 CATGGAATGAACTC-CCTATGCCTAAGACAACCCACGAAACGGGCGTCCGGGCGCTCAACCGACC
* * * *
21097669 -AGAGAGGTAGAATACGCAAGCTAGGGATCAGCCCGGTCCC-CTCTGTGTGCTACCGATCCTGCT
256 GA-AGAGGAAGAATACGCAAGCCAGGGATCAGCCCGATCCCTC-CTGAGTGCTACCGATCCTGCT
** * * *
21097732 GTCGCAACCCTCAGTCTGGTCTGA
319 ACCGCAACCCTCAGCCCGATCTGA
* * * *
21097756 TCTTAGACTGGGAATGAACTCTGTACGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTAAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* **
21097821 CATGAAATGAGCGTACGGACGCTCAGCCGCCTAACGAGGCAGGATGCGTAAGCCAGGGATTGGCC
66 CATGAAATGAGCGTACGG-CGCTCAGCCGCCTAACGAGGCAGAATGCGTAAGCTGGGGATT-GCC
* *
21097886 -CGGTCCCCC-CTGCGTGCT
129 TCAGTCCCCCTCTGCATGCT
21097904 ACTGATCCTA
Statistics
Matches: 400, Mismatches: 77, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
341 1 0.00
342 92 0.23
343 301 0.75
344 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (342 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
CATGAAATGAGCGTACGGCGCTCAGCCGCCTAACGAGGCAGAATGCGTAAGCTGGGGATTGCCTC
AGTCCCCCTCTGCATGCTGCCGAGCCCACTGCCACAACCCTTAGTCCAGCTGGGGCTCAGACATG
GAATGAACTCCCTATGCCTAAGACAACCCACGAAACGGGCGTCCGGGCGCTCAACCGACCGAAGA
GGAAGAATACGCAAGCCAGGGATCAGCCCGATCCCTCCTGAGTGCTACCGATCCTGCTACCGCAA
CCCTCAGCCCGATCTGA
Found at i:21098890 original size:25 final size:26
Alignment explanation
Indices: 21098862--21098912 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21098852 CCGCTCTGAT
21098862 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
*
21098887 CTTAGACTTGGAGTGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
21098913 TCTAAGCGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:21099191 original size:711 final size:711
Alignment explanation
Indices: 21098130--21099770 Score: 1656
Period size: 711 Copynumber: 2.3 Consensus size: 711
21098120 TTGCTGTCGT
* * *
21098130 AACCCTCGATCTGGTCTGATCTTAGAATGGGAATGAACTCCATGTGCTTAGACATGGAATGAACT
1 AACCCTCGATCCGCTCTGATCTTAGAATGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
** ** * * *
21098195 CCGTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCACCGATCGAAAAGGCAGAATGT
66 CCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGACGCTCACCGACCGAAAAGGAAGAATGC
* * * * * * * *
21098260 ACAAGTCGGGGATCAGCCCGATCCCTCTTACGTGCTATCGATCCTGCTGCTGCAACTTTCGGTTC
131 ACAAGCCGAGGACCAGCCCGATCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCTTCGGTTC
* * * *
21098325 GATCCGATCTTAGACTGGGAAAATGAACTTCGTATGCCTAAGTCAACCCAGGTAACGAGCGTTCG
196 GATCCAATCTTAGACTGGG-AAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCG
* * * * * *
21098390 GGCACTGAGCCAGCTAGAAAGGCATAATACGTAAGCCAGGGATCGATCCGGTCCCTCTCTGTGTG
260 GGCACTGAGCCAGCCAGAAAGGCATAATACGTAAGCCAAGGATCGACCCGATCCCCCTCTGCGTG
* * *
21098455 CTGCCGATCCCGCTACCACAACCCTCTG-TCCGGTTGGGGCTTAGACATGGAATGAACTCCCTAT
325 CTGCAGATCCCGCTACCACAACCCTC-GATCCGATCGGGGCTTAGACATGGAATGAACTCCCTAT
* * * * *
21098519 GCCTAAGCCAACCCATGAAACAGGCGTACGGGTGCTCAACCGACCGGAGAGGTAGAATGCGTAAG
389 GCCTAAGCCAACCCACGAAACAGGCATACGGGTGCTCAACCGACCGGAGAGGCAAAATGCGCAAG
** * * *
21098584 CTCGA-GATCGGCTCC-ATCCTTCCTACGTGCTACCGATCTTACT-GTCGCAACCCTCGG-CTTG
454 C-CGAGGATCGGC-CCGATCCCCCCTACGTGCTACCGATCCTACTACT-GCAACCCTCGGTC-CG
* ** ** *
21098645 ATCCGATCTTAGACTAGGAATGAACTCCGTATGGTTAAACTAGGGATGAACTCCGTATACCTAAG
515 ATCCAATCTTAGACTAGGAATGAACTCCACATACTTAAACTAGGGATGAACTCCGTATACATAAG
21098710 TCAACCCACGAAATGAGCGTGCTAGCGCTCAGTCGACCGGAGAGCCTGGCCGGAAAGGTAGAATG
580 TCAACCCACGAAATGAGCGTGCTAGCGCTCAGTCGACCGGAGAGCCTGGCCGGAAAGGTAGAATG
21098775 TGCAAGCCGGGGATCAATCCGGACACCCCTTGCGTGCTGCTGGTCCTGCTGCTGGTTCGGCTATA
645 TGCAAGCCGGGGATCAATCCGGACACCCCTTGCGTGCTGCTGGTCCTGCTGCTGGTTCGGCTATA
21098840 GC
710 GC
* * * *
21098842 AACCCTCGATCCGCTCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTTGGAGTGAACT
1 AACCCTCGATCCGCTCTGATCTTAGAATGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
* * * * *
21098906 CCGTATGTCTAAGCGAACCCACAAAACAAGCGTGCGGACGCTCAGCTGGCC-AGAGAGGAAGAAT
66 CCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGACGCTCA-CCGACCGA-AAAGGAAGAAT
* * *
21098970 GCGCAAGCCGAGGACCGGCCCGATCACCCCCTACGTGCTGTCGATCCTGCTACCGCAACCTTCGG
129 GCACAAGCCGAGGACCAGCCCGATC-CCCCCTACGTGCTATCGATCCTGCTACCGCAACCTTCGG
* * * * * *
21099035 -TCTGGTCTAATTTTAGACTTGG-AATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGTGT
193 TTC-GATCCAATCTTAGACTGGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
** *
21099098 TCGGGCGGTGAGCC-GACCA-AAGAGGCATAATGCGTAAGCCAAGGATC-AGCCCGATCCCCCTC
257 TCGGGCACTGAGCCAG-CCAGAA-AGGCATAATACGTAAGCCAAGGATCGA-CCCGATCCCCCTC
* *
21099160 TGCGTGCTGTCAGA-CCCGCTGCCATAACCCTCGATCCGATCGGGGCTTAGACATGGAATGAACT
319 TGCGTGCTG-CAGATCCCGCTACCACAACCCTCGATCCGATCGGGGCTTAGACATGGAATGAACT
* * * *
21099224 CGCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAGCCGACCGGAGAGGCAAAATG
383 CCCTATGCCTAAGCCAACCCACGAAACAGGCATACGGGTGCTCAACCGACCGGAGAGGCAAAATG
* * ** *
21099289 CGCAAGCCGAGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTACTGTAACCCTCGGTC
448 CGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTACCGATCCTACTACTGCAACCCTCGGTC
* * * * * * *
21099354 CGGTCTAATCTTAGATTGGGAATGAACTCCACATACTTAGACTGGGGATGAACTCCGTATGCATA
513 CGATCCAATCTTAGACTAGGAATGAACTCCACATACTTAAACTAGGGATGAACTCCGTATACATA
** * * ** * **
21099419 AGTCAACCCACGAAACAAGCATACGGGTGCTCAACCGACCGGAGA----GG-C---AA---A-AA
578 AGTCAACCCACGAAATGAGCGTGCTAGCGCTCAGTCGACCGGAGAGCCTGGCCGGAAAGGTAGAA
* * * * * * * * * * *
21099472 -GTGCAAGTCAGGGATC-AGCTC-GATC-CCTCCCTACATGCTACTGATCCTGCTGTTAG-TCTT
643 TGTGCAAGCCGGGGATCAATC-CGGA-CACC-CCTTGCGTGCTGCTGGTCCTGCTGCTGGTTC-G
**
21099532 GCTGCAGC
704 GCTATAGC
* * * * * ***
21099540 AACCCTCGGTCCGATCTGATTTTAGACTGAGAATGAACTTTGTATGCTTAGACATGGAATGAACT
1 AACCCTCGATCCGCTCTGATCTTAGAATGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
* * * * *
21099605 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGTAGAATG
66 CCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGACGCTCA-CCGACCGAAAAGGAAGAATG
** * ** * ** ** * *
21099670 CGTAAGCC-AGGGTCTGGCCC-AGTCCCCCCTACGTGCTGTCGATCCTATTGTCACAACCCTCGG
130 CACAAGCCGA-GGACCAGCCCGA-TCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCTTCGG
*
21099733 TTCGATCCGATCTTAGACTGGG-AATGAACTCCGTATGC
193 TTCGATCCAATCTTAGACTGGGAAATGAACTCCGTATGC
21099771 TTATACTGGG
Statistics
Matches: 768, Mismatches: 139, Indels: 58
0.80 0.14 0.06
Matches are distributed among these distances:
697 8 0.01
698 132 0.17
699 107 0.14
700 2 0.00
703 2 0.00
706 1 0.00
707 2 0.00
710 10 0.01
711 394 0.51
712 63 0.08
713 47 0.06
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (711 bp):
AACCCTCGATCCGCTCTGATCTTAGAATGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
CCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGACGCTCACCGACCGAAAAGGAAGAATGC
ACAAGCCGAGGACCAGCCCGATCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCTTCGGTTC
GATCCAATCTTAGACTGGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGG
GCACTGAGCCAGCCAGAAAGGCATAATACGTAAGCCAAGGATCGACCCGATCCCCCTCTGCGTGC
TGCAGATCCCGCTACCACAACCCTCGATCCGATCGGGGCTTAGACATGGAATGAACTCCCTATGC
CTAAGCCAACCCACGAAACAGGCATACGGGTGCTCAACCGACCGGAGAGGCAAAATGCGCAAGCC
GAGGATCGGCCCGATCCCCCCTACGTGCTACCGATCCTACTACTGCAACCCTCGGTCCGATCCAA
TCTTAGACTAGGAATGAACTCCACATACTTAAACTAGGGATGAACTCCGTATACATAAGTCAACC
CACGAAATGAGCGTGCTAGCGCTCAGTCGACCGGAGAGCCTGGCCGGAAAGGTAGAATGTGCAAG
CCGGGGATCAATCCGGACACCCCTTGCGTGCTGCTGGTCCTGCTGCTGGTTCGGCTATAGC
Found at i:21099610 original size:26 final size:26
Alignment explanation
Indices: 21099561--21099612 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21099551 CGATCTGATT
**
21099561 TTAGACTGAGAATGAACTTTGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
21099587 TTAGACATG-GAATGAACTCCGTATGC
1 TTAGAC-TGAGAATGAACTCCGTATGC
21099613 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:21099773 original size:26 final size:26
Alignment explanation
Indices: 21099744--21099796 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21099734 TCGATCCGAT
*
21099744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* * *
21099770 CTTATACTGGGGATGAACACTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
21099796 C
1 C
21099797 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:21099881 original size:184 final size:184
Alignment explanation
Indices: 21099204--21099857 Score: 448
Period size: 184 Copynumber: 3.5 Consensus size: 184
21099194 TCCGATCGGG
* * * * * * **
21099204 GCTTAGACATGGAATGAAC-TCGCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACACCG-TATGCATAAGCCAACCAACGAAACGAGCGTACGGGCACTCA
* * * * * *
21099268 GCCGACCGGAGAGGCAAAATGCGCAAGCCGAGGAT-TGGCCCGGTCCCCCCTACGTGCTGTCGAT
65 GCAGACCGAAGAGGTAGAATGCGCAAGCC-AGGGTCTGGCCCAGTCCCCCCTACGTGCTGTCGAT
* ** * * **
21099332 CCTACTACTGT---AACCCTCGGTCCGGTCTAATCTTAGATTGGGAATGAACTCCACAT
129 CCTA-T--TGTCACAACCCTCGGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTAT
* * * * * * * **
21099388 ACTTAGAC-TGGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCATACGGGTGCTCA
1 GCTTAGACAT-GGAATGAACACCGTATGCATAAGCCAACCAACGAAACGAGCGTACGGGCACTCA
* * * * * * * * * * * *
21099452 ACCGACCGGAGAGGCAAAAAGTGCAAGTCAGGGATC-AGCTC-GATCCCTCCCTACATGCT-ACT
65 GCAGACCGAAGAGGTAGAATGCGCAAGCCAGGG-TCTGGCCCAG-TCCC-CCCTACGTGCTGTC-
* *
21099514 GATCCTGCTGTTAGTCTTGCTGCAGCAACCCTCGGTCCGATCTGATTTTAGACTGAGAATGAACT
126 GAT-C--C---TA---TTG-T-CA-CAACCCTCGGTCCGATCCGATCTTAGACTGAGAATGAACT
**
21099579 TTGTAT
179 CCGTAT
* * * * *
21099585 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACACCGTATGCATAAGCCAACCAACGAAACGAGCGTACGGGCACTCAG
* *
21099650 CCGACCGAAGAGGTAGAATGCGTAAGCCAGGGTCTGGCCCAGTCCCCCCTACGTGCTGTCGATCC
66 CAGACCGAAGAGGTAGAATGCGCAAGCCAGGGTCTGGCCCAGTCCCCCCTACGTGCTGTCGATCC
* *
21099715 TATTGTCACAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
131 TATTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTAT
* * * *
21099769 GCTTATAC-TGGGGATGAACACTGTATGCATAAGTCAACCAACGAAA-GAAGCGTACGGGCACTC
1 GCTTAGACAT-GGAATGAACACCGTATGCATAAGCCAACCAACGAAACG-AGCGTACGGGCACTC
** * *
21099832 AGCAGGTCGGAGAGGTTGAATGCGCA
64 AGCAGACCGAAGAGGTAGAATGCGCA
21099858 GGTCGGGGAT
Statistics
Matches: 376, Mismatches: 67, Indels: 54
0.76 0.13 0.11
Matches are distributed among these distances:
183 7 0.02
184 195 0.52
185 17 0.05
186 2 0.01
187 3 0.01
188 1 0.00
190 2 0.01
191 4 0.01
192 1 0.00
193 3 0.01
195 1 0.00
196 15 0.04
197 123 0.33
198 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACACCGTATGCATAAGCCAACCAACGAAACGAGCGTACGGGCACTCAG
CAGACCGAAGAGGTAGAATGCGCAAGCCAGGGTCTGGCCCAGTCCCCCCTACGTGCTGTCGATCC
TATTGTCACAACCCTCGGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTAT
Found at i:21100274 original size:26 final size:26
Alignment explanation
Indices: 21100245--21100297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21100235 CCGGTCTGAT
*
21100245 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21100271 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21100297 C
1 C
21100298 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21100851 original size:26 final size:26
Alignment explanation
Indices: 21100822--21100874 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21100812 CCAGTACTAT
21100822 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* * * *
21100848 CTTAGATTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
21100874 C
1 C
21100875 CTAACTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:21100939 original size:393 final size:393
Alignment explanation
Indices: 21100377--21101241 Score: 1056
Period size: 393 Copynumber: 2.2 Consensus size: 393
21100367 ATCGGCTTGG
* ** * * * * * * *
21100377 TCCCCCTTGCGTGCTGTCGAACCTGCTGCCGTAACCCTCAGTCCGGTACGATCTTAGACTGGGAA
1 TCCCCCCTGCGTGCTACCGATCCTACTGCTGCAACCCTCGGTCCAGTACTATCTTAGACTGGGAA
* * * * *
21100442 TGAACTCCATATGCTTAGATTGGGGATAAACTCAGTATGCCTAAGTCAACCCATAAAATGAGCGT
66 TGAACTCCATATGCTTAGATTGGGGATAAACTCAGTATGCCTAACTCAAACCACAAAACGAGCAT
* * *
21100507 ACGGGCGCTCAGCTGGCCAAAGAGGTAAGACGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCC
131 ACGGGCGCTCAGCTGGCCAAAGAGGCAAGACGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCC
* * ** * *
21100572 GGTCCCCTCCTGCGTGCTGTTGATCCTACTACTAGTCCTACTGTCGTAACCCTCGGTCTGGTTTG
196 GGTCCCC-CCTACGTGCTGTCGATCCTACTACTAGTCCTACTGTCACAACCCTCGATCTGGTCTG
* *
21100637 ATCTTAGAATGGGAATGAACTCC-TATGCTTAGACAT-GAATGAACTTCGTATGCCTAAGCCAAC
260 ATCTTAGAATGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAAC
* * * ** * *
21100700 CCATGAAACGGGGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGTGCAAGTCAGAGATCGA
325 CCACGAAA-GGGGCATGCGGGCACTCAACCGACCGGAGAGGCAGAATGTGCAAGCCAGAGATCGA
21100765 CCCAA
389 CCCAA
* * *
21100770 TCCCCCCTGTGTGCTACCGATCCTACTGCTGCAACCTTCGGTCCAGTACTATCTTACACTGGGAA
1 TCCCCCCTGCGTGCTACCGATCCTACTGCTGCAACCCTCGGTCCAGTACTATCTTAGACTGGGAA
* * * *
21100835 TGAACTCCATATGCTTAGATTGGGGATGAACTCCGTATGCCTAACTCAAAGCACGAAACGAGCAT
66 TGAACTCCATATGCTTAGATTGGGGATAAACTCAGTATGCCTAACTCAAACCACAAAACGAGCAT
* * ** ** ** *
21100900 ACGGGTGCTCAG-TCGATCGGAA-AGGCAAGGTGGAGAGGCAGAATGTGCAAGCCGAGGATCGGC
131 ACGGGCGCTCAGCT-G-GCCAAAGAGGCAAGACGGAGAGGCAGAATGCACAAGCCGAGGATCAGC
* * * * * * * *
21100963 TCGGTCCTCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTGTTACAACCTTCGATTTGGTCT
194 CCGGTCCCCCCTACGTGCTGTCGATCCTACTACTAGTCCTACTGTCACAACCCTCGATCTGGTCT
* *
21101028 GATCTTAGATTGGGAATGAACTCCATGTGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAA
259 GATCTTAGAATGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAA
* * * *
21101093 CCCACGAAATGGGCATGCGGGCACTCAACCGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGG
324 CCCACGAAAGGGGCATGCGGGCACTCAACCGACCGGAGAGGCAGAATGTGCAAGCCAGAGATCGA
*
21101158 CCCGA
389 CCCAA
*
21101163 TCCCCCCTGCGTGCTACCGATCCTACTGCTGCAACCCTCGATCCAGT-CTGATCTTAGACTGGGA
1 TCCCCCCTGCGTGCTACCGATCCTACTGCTGCAACCCTCGGTCCAGTACT-ATCTTAGACTGGGA
*
21101227 ATGAACTCCGTATGC
65 ATGAACTCCATATGC
21101242 CTAAGTCAAC
Statistics
Matches: 398, Mismatches: 69, Indels: 10
0.83 0.14 0.02
Matches are distributed among these distances:
392 70 0.18
393 293 0.74
394 35 0.09
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (393 bp):
TCCCCCCTGCGTGCTACCGATCCTACTGCTGCAACCCTCGGTCCAGTACTATCTTAGACTGGGAA
TGAACTCCATATGCTTAGATTGGGGATAAACTCAGTATGCCTAACTCAAACCACAAAACGAGCAT
ACGGGCGCTCAGCTGGCCAAAGAGGCAAGACGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCC
GGTCCCCCCTACGTGCTGTCGATCCTACTACTAGTCCTACTGTCACAACCCTCGATCTGGTCTGA
TCTTAGAATGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACC
CACGAAAGGGGCATGCGGGCACTCAACCGACCGGAGAGGCAGAATGTGCAAGCCAGAGATCGACC
CAA
Found at i:21102278 original size:26 final size:26
Alignment explanation
Indices: 21102242--21102294 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21102232 CTGGTCTGAT
*
21102242 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
21102268 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21102294 C
1 C
21102295 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21102469 original size:26 final size:26
Alignment explanation
Indices: 21102440--21102490 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21102430 CGGTGCGATC
*
21102440 TTAGACTGGGAATGAATTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
*
21102466 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
21102491 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:21102678 original size:26 final size:26
Alignment explanation
Indices: 21102649--21102701 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21102639 CTGATCCGAT
21102649 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
21102675 CTTAGGCTAGGGATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21102701 C
1 C
21102702 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21103222 original size:159 final size:156
Alignment explanation
Indices: 21102869--21103249 Score: 372
Period size: 156 Copynumber: 2.4 Consensus size: 156
21102859 AACTCCGTAT
* * *
21102869 GCTTAGACATGGAATGAACTTGGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAATGAGCATGTGGGCGCTCAG
*
21102934 CCAGACGGAGAGGCAAAATACGCAAGCAGGGACCGGCCCAGTCCCCCTATGTGCTACCGATCCTG
66 CCAGACGGAGAGGCAAAATACGCAAGCAGGGACCGGCCCAGTCCCCCTATGTGCTACCGATCCTA
* * *
21102999 CTATCGCAACCCTCGGTCCAGGTCAA
131 CTACCACAACCCTCGGTCCAGCTCAA
* ** * *
21103025 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAATCAACCCATAAAATGAGCAT-TCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATAAAATGAGCATGT-GGGCGCTC
* * * * * * * * * *
21103088 AGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTCTGTGTACTATCGG
64 AGCCAGACGGAGAGGCAAAATACGCAAG-CAGGGACCGGCCCAGTCCCCCTATGTG--CTACCGA
* * ***
21103153 TCTTACTACCACAACCCTTGGTCC-GACTGGG
126 TCCTACTACCACAACCCTCGGTCCAG-CTCAA
* * * * * * **
21103184 GCTTAGACATGGAATGAGCTCCGTACGCCTAAGCCAACCCATGAAACGGGCATGTAAGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAATGAGCATGTGGGCGCTCAG
21103249 C
66 C
21103250 AGCCTGGAGA
Statistics
Matches: 177, Mismatches: 40, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
155 2 0.01
156 76 0.43
157 22 0.12
158 1 0.01
159 74 0.42
160 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAATGAGCATGTGGGCGCTCAG
CCAGACGGAGAGGCAAAATACGCAAGCAGGGACCGGCCCAGTCCCCCTATGTGCTACCGATCCTA
CTACCACAACCCTCGGTCCAGCTCAA
Found at i:21103372 original size:26 final size:26
Alignment explanation
Indices: 21103343--21103395 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21103333 CCGGTCTGAT
21103343 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21103369 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21103395 C
1 C
21103396 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21104116 original size:26 final size:26
Alignment explanation
Indices: 21104064--21104116 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21104054 GGCTCAAACT
*
21104064 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
21104090 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
21104116 C
1 C
21104117 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:21104447 original size:26 final size:26
Alignment explanation
Indices: 21104406--21104458 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21104396 CCAGTCCTAT
*
21104406 CTTAGACTAGGAATGACCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
21104432 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21104458 C
1 C
21104459 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21104838 original size:26 final size:26
Alignment explanation
Indices: 21104797--21104849 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21104787 CCGATCCAAT
*
21104797 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21104823 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
21104849 C
1 C
21104850 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21104841 original size:195 final size:194
Alignment explanation
Indices: 21104374--21104921 Score: 613
Period size: 195 Copynumber: 2.8 Consensus size: 194
21104364 GTGCTACCGA
* * * * *
21104374 TCCTACTGCCGCAACCCTC-GATCCAGTCCTATCTTAGACTAGGAATGACCTCCGTATGCTTAGA
1 TCCTACTGCCACAACCCTCAG-TCCA-TCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * * * * ***
21104438 CTGGGGATGAACTCCGTATGCCTAACTCAACCCACGAAATGACCGTGCGGATGCTCAGCCGGTTG
64 CTAGGGATGAACTCCGTATGCCTAA-GCAACCCACGAAATGAGCGTGCGGGTGCTCAACCGACAG
* * * * *
21104503 GAGAGGCAGAAAGTGC--AAGCCGGGGATCGGCTCGATCCCCCCTGCATGCTATCGATCCTGTTG
128 GAGAGGC-CAAA-TGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTGTTG
21104566 CTGG
191 CTGG
* * ** * * * *
21104570 TCCTACTGCCACAACCCTCAATTTCATCTGATCTTAGACTGAGAATTAACTCTATATTCTTAGAC
1 TCCTACTGCCACAACCCTC-AGTCCATCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
* * * *
21104635 -ATGGAATGAACTCTGTATGCCTAAGCGAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCG
65 TA-GGGATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAGCGTGCGGGTGCTCAACCGACAG
21104699 GAGAGGCCAAATGCGTAAGCTGGGGATCGACCCGAT-CCCCCTGCATGCTACCGATCCTGTTGCT
128 GAGAGGCCAAATGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTGTTGCT
21104763 GG
193 GG
* *
21104765 TCCTACTACCCCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
1 TCCTACTGCCACAACCCTCAGTCC-ATCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
* * * *
21104830 TAGGGATGAACTCCGTATGCGTAAGTCAACCCATGAAATGAGCGTACAGGTGCTCAACCGACAGG
65 TAGGGATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGCGGGTGCTCAACCGACAGG
* *
21104895 AGAGG-CATAATGCGTCAGCTAGGGATC
129 AGAGGCCA-AATGCGTAAGCTGGGGATC
21104922 AGTGCGATCC
Statistics
Matches: 294, Mismatches: 48, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
194 8 0.03
195 159 0.54
196 124 0.42
197 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (194 bp):
TCCTACTGCCACAACCCTCAGTCCATCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
AGGGATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGCGTGCGGGTGCTCAACCGACAGGAG
AGGCCAAATGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTGTTGCTGG
Found at i:21104985 original size:21 final size:21
Alignment explanation
Indices: 21104960--21105001 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
21104950 TCCCGCTGTC
*
21104960 GGTCCTGCTGCCACAACCCTT
1 GGTCCGGCTGCCACAACCCTT
21104981 GGTCCGGCTGCCACAACCCTT
1 GGTCCGGCTGCCACAACCCTT
21105002 TGTCTGACTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.43, G:0.21, T:0.21
Consensus pattern (21 bp):
GGTCCGGCTGCCACAACCCTT
Found at i:21105494 original size:26 final size:25
Alignment explanation
Indices: 21105465--21105516 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
21105455 CTGGTCTGAT
21105465 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGCGG-ATGAACTC-GTATG
21105491 CTTAGACTGCGGATGAACTCGTATG
1 CTTAGACTGCGGATGAACTCGTATG
21105516 C
1 C
21105517 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 6 0.24
26 17 0.68
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACTGCGGATGAACTCGTATG
Found at i:21106556 original size:26 final size:26
Alignment explanation
Indices: 21106527--21106577 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21106517 CTGGTCCGAT
21106527 CTTACAC-TGGGAATGAACTCCGTATG
1 CTTACACAT-GGAATGAACTCCGTATG
* *
21106553 CTTAGACATGGAATGAACTTCGTAT
1 CTTACACATGGAATGAACTCCGTAT
21106578 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTACACATGGAATGAACTCCGTATG
Found at i:21107054 original size:158 final size:158
Alignment explanation
Indices: 21106553--21107054 Score: 449
Period size: 158 Copynumber: 3.2 Consensus size: 158
21106543 ACTCCGTATG
* * *
21106553 CTTAGACATGGAATGAACTTCGTATACCTAAGCCAAGCCAAGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAAC
* * * * * *** * *
21106618 CGACTGGAGAGGTAGAATGCGTAAGTTGGGGAT-CGACCTGATCCCCCCTGTACGCTGTCGATCC
66 AGACTGGAGAGGCAGAATGCGTAAGTTAGGGATCCG-CCCGGTCCCCCCTGCGTGCTGCCAATCC
* * * *
21106682 TACTACCACAACCCTCGGTCCGGTCTGAT
130 TGCTGCCACAACCCTCAGTCCGATCTGAT
* * * * * * ** * *
21106711 CTTAGAC-TGGGAATGAACCCCGTATCCCTAAGTCAACCCACGAAACGAGCGTTCAGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAA
* * * * * **
21106775 CAGACCGGAGAGGCATAATGCATAAGTTAGGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCTGT-
65 CAGACTGGAGAGGCAGAATGCGTAAGTTAGGGATCCGCCCGGTCCCCC-CTGCGTGCTGCCAATC
* *
21106839 CTCGCTGCCCCAACCCTCAGTCC-AGCTTGGA-
129 CT-GCTGCCACAACCCTCAGTCCGATC-T-GAT
* * * *
21106870 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAAC
* * ** *
21106935 TGACTGGAGAGGCAGAATGCGCAAGCCAGAGATCCGCCCGGTCCCCCCTGCGTGCTGCCAATCCT
66 AGACTGGAGAGGCAGAATGCGTAAGTTAGGGATCCGCCCGGTCCCCCCTGCGTGCTGCCAATCCT
* * * * *
21107000 GCTGTCGCAACCTTCCGTCCGATCTAAT
131 GCTGCCACAACCCTCAGTCCGATCTGAT
21107028 CTTAGAC-TAGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
21107055 TTAGACTAGG
Statistics
Matches: 267, Mismatches: 66, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 143 0.54
159 118 0.44
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAAC
AGACTGGAGAGGCAGAATGCGTAAGTTAGGGATCCGCCCGGTCCCCCCTGCGTGCTGCCAATCCT
GCTGCCACAACCCTCAGTCCGATCTGAT
Found at i:21107057 original size:26 final size:26
Alignment explanation
Indices: 21107028--21107078 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21107018 CCGATCTAAT
21107028 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
21107054 CTTAGACTAGGGATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
21107079 ACCGAAGTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21107290 original size:26 final size:26
Alignment explanation
Indices: 21107237--21107292 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
21107227 CCGGTCTGAT
*
21107237 CTTAGACTGGGAATGAACTCCATTTG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21107263 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21107289 CTTA
1 CTTA
21107293 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21107499 original size:710 final size:693
Alignment explanation
Indices: 21106122--21107809 Score: 1803
Period size: 710 Copynumber: 2.4 Consensus size: 693
21106112 GGTGATTATG
** *
21106122 CCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCATTGGTCCGGTTGGGGCTTAGACATGGAAT
1 CCCCTCTGCGTGCTGCC-GT-CCGCTGCCACAACCATCAGTCCGCTT-GGGCTTAGACATGGAAT
*
21106187 GAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCT-AGCCGGAGAGGC
63 GAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGA-CCGGAGAGGC
* * * *
21106251 AGAATGCGCATGCCAAGGAT-CGACCCAGTCCCCCCTACGTGCTGCCGATCCTACTGTCGCAACC
127 AGAATGCGCAAGCCAAGGATCCG-CCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACC
* * * * * * * *
21106315 CTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTTCATATGCTTAGACTGGGGATGAAATCCGT
191 CTCCGTCCGATCTAATCTTAGACTAGGAATGAACTCCATATGCTTAGACT-GGGATGAACTCCGT
* * * ** * * * *
21106380 ATGCCTAAGTCAACCCACGAAATGAGCGTGTAGGCGCTCGATCGATCGGAGAGGTAGAATACGTA
255 ATACCGAAGTCAACCCACAAAACAAGCGTGTAGGCGCTCAACCGATCGGAGAGGCAGAATACGCA
* *
21106445 AGCCAAAGATCAACCTGTTCCCTCCTGCGTGCTACCGATCCTGCTATTGGTCCTACTACCGTAAC
320 AGCCAAAGATCAACCAGTTCCCCCCTGCGTGCTACCGATCCTGCTATTGGTCCTACTACCGTAAC
* *
21106510 CCTCTATCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCG
385 CCTCTATCCGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCG
* * * *
21106575 TATACCTAAGCCAAGCCAAGAAACGAGCGTGCGGGCGCTCAACCGACTGGAGAGGTAGAATGCGT
450 TATACCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGTAGAATGCGT
*** * * * *
21106640 AAGTTGGGGATCGACCTGATCCCCCCTGTACGCTGTCGATCCTACTACCACAACCCTCGGTCCGG
515 AAGCCAGGGACCGACCTGATCCCCCCTGCACGCTGTCGATCCTACTACCACAACCCTCGATCCGA
*
21106705 TCTGATCTTAGACTGGGAATGAACCCCGTATCCCTAAGTCAACCCACGAAACGAGCGTTCAGGCA
580 TCTGATCTTAGACTGGGAATGAACCCCGTATCCCTAAGTCAACCCACGAAACGAACGTTCAGGCA
* * * * * *
21106770 TTGAGCAGACCGGAGAGGCATAATGCATAAGTTAGGGATCGGCCCAGTC
645 CTAAGCAGACCGAAGAGGCATAATGCATAAGTCAGGGATCGACCCAATC
* * *
21106819 CCCCTCTGCGTGCTGCCTGTCTCGCTGCCCCAACCCTCAGTCCAGCTTGGACTTAGACATGGAAT
1 CCCCTCTGCGTGCTGCC-GTC-CGCTGCCACAACCATCAGTCC-GCTTGGGCTTAGACATGGAAT
* * *
21106884 GAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAACTGACTGGAGAGGCA
63 GAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGACCGGAGAGGCA
* *
21106949 GAATGCGCAAGCC-AGAGATCCGCCCGGTCCCCCCTGCGTGCTGCCAATCCTGCTGTCGCAACCT
128 GAATGCGCAAGCCAAG-GATCCGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCC
*
21107013 TCCGTCCGATCTAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTA
192 TCCGTCCGATCTAATCTTAGACTAGGAATGAACTCCATATGCTTAGACT-GGGATGAACTCCGTA
* * *
21107078 TACCGAAGTCCACCCACAAAACAAGTGTGTGGGCGCTCAACCAACCGAAAAGGCCCGTCGGAGAG
256 TACCGAAGTCAACCCACAAAACAAGCGTGTAGGCGCT----CAACCG---A------TCGGAGAG
* *** * * *
21107143 GCAGAATACGCAAGTCGGGGGTCGACCCAG-TCCCCCCTGCGTGCTACCGATCCTGCTGTTGGTC
308 GCAGAATACGCAAGCCAAAGATC-AACCAGTTCCCCCCTGCGTGCTACCGATCCTGCTATTGGTC
* * * * *
21107207 CTACTACCGTAA-CCTTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACA
372 CTACTACCGTAACCCTCT-ATCCGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACA
* * * * * *
21107271 TGGAATGAACTTCGTATGCTTAAGCCAACCCATGAAATGAGCGTGCGGGCACTTAGCC-AGCCGA
436 TGGAATGAACTTCGTATACCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAACCGA-CCGA
* ** * ** * * *
21107335 AGAGGTAGAATGCGTAGGCCAGGGACCGGTCTGATCCCTCCTGCGTGCTGTCGATCCTGCTGCCG
500 AGAGGTAGAATGCGTAAGCCAGGGACCGACCTGATCCCCCCTGCACGCTGTCGATCCTACTACCA
* * * * *
21107400 CAACACC-C-ATATCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATG
565 CAAC-CCTCGAT-CCGATCTGATCTTAGACTGGGAATGAACCCCGTATCCCTAAGTCAACCCACG
* * * ** * * * * *
21107463 AAATGAATGTTTAGGTGCTAAGCTGGCCGAAGAGGCATACTGCGTAAGTCAGGGATTGACCCAAT
628 AAACGAACGTTCAGGCACTAAGCAGACCGAAGAGGCATAATGCATAAGTCAGGGATCGACCCAAT
21107528 C
693 C
* ** * * * *
21107529 CCCCTCTGCATGCTATCGATCCTGCTGCCATAACCTTCAGTCCGGCTAGGGCATAGACATGGAAT
1 CCCCTCTGCGTGCTGCCG-TCC-GCTGCCACAACCATCAGTCC-GCTTGGGCTTAGACATGGAAT
* ** ** * * *
21107594 GAACTCCCTATGCCTATGTTAACCCATGAAACGGATGTGTC-GGCACTCAGCCGACCGGAGAGGT
63 GAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTG-CGGGCGCTCAGCTGACCGGAGAGGC
* * * ** * **
21107658 AGAATGCGTAAGTCAAGGATCGGCTTGGTGCCCCCTGCGTGCTGTTGATCCTGCTGTCGCAACCC
127 AGAATGCGCAAGCCAAGGATCCGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCC
* * **
21107723 T-CGATCCGATCAAATCTTACACTAAAAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
192 TCCG-TCCGATCTAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGG-ATGAACTCCGT
* * * *
21107787 ATGCCTAAGCCAACCCACGAAAC
255 ATACCGAAGTCAACCCACAAAAC
21107810 GAGAGTTCGG
Statistics
Matches: 818, Mismatches: 144, Indels: 45
0.81 0.14 0.04
Matches are distributed among these distances:
696 3 0.00
697 247 0.30
698 6 0.01
701 4 0.00
704 1 0.00
709 13 0.02
710 535 0.65
711 9 0.01
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (693 bp):
CCCCTCTGCGTGCTGCCGTCCGCTGCCACAACCATCAGTCCGCTTGGGCTTAGACATGGAATGAA
CTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGACCGGAGAGGCAGAA
TGCGCAAGCCAAGGATCCGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCCG
TCCGATCTAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGATGAACTCCGTATACCG
AAGTCAACCCACAAAACAAGCGTGTAGGCGCTCAACCGATCGGAGAGGCAGAATACGCAAGCCAA
AGATCAACCAGTTCCCCCCTGCGTGCTACCGATCCTGCTATTGGTCCTACTACCGTAACCCTCTA
TCCGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATACC
TAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGTAGAATGCGTAAGCCA
GGGACCGACCTGATCCCCCCTGCACGCTGTCGATCCTACTACCACAACCCTCGATCCGATCTGAT
CTTAGACTGGGAATGAACCCCGTATCCCTAAGTCAACCCACGAAACGAACGTTCAGGCACTAAGC
AGACCGAAGAGGCATAATGCATAAGTCAGGGATCGACCCAATC
Found at i:21108805 original size:26 final size:26
Alignment explanation
Indices: 21108776--21108828 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21108766 CCGGTCTGAT
* *
21108776 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
21108802 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
21108828 C
1 C
21108829 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:21109406 original size:12 final size:12
Alignment explanation
Indices: 21109389--21109418 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
21109379 CCCTTTACGT
21109389 GCTACCGATCCC
1 GCTACCGATCCC
*
21109401 GCTACCGATCCT
1 GCTACCGATCCC
21109413 GCTACC
1 GCTACC
21109419 ACAACCCTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.47, G:0.17, T:0.20
Consensus pattern (12 bp):
GCTACCGATCCC
Done.