Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 111 of 125
Found at i:21109635 original size:26 final size:26
Alignment explanation
Indices: 21109599--21109651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21109589 CTGGTCTGAT
21109599 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21109625 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21109651 C
1 C
21109652 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21109835 original size:26 final size:26
Alignment explanation
Indices: 21109797--21109849 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21109787 CCGGTCCAAT
*
21109797 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21109823 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21109849 C
1 C
21109850 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21110756 original size:514 final size:516
Alignment explanation
Indices: 21109777--21110780 Score: 1250
Period size: 514 Copynumber: 1.9 Consensus size: 516
21109767 CTGCTGCCAC
** *
21109777 AACCCTCGGCCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
1 AACCCTCAACCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
* * * * *
21109842 CCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAGTTAGTCGGAGAGGCAGAATG
66 CCACATGCCTAAACCAACCCACGAAACGAGCGTGCAGACGCTCAGTCAGCCGGAGAGGCAAAATG
*** * * * *
21109907 CGCAAGTCAGGGATCGGTTCGGTCCCCCTTACGTGCTATCGATCCTGCTACCGCAAACCTTGGTC
131 CGCAAGTCAGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCGGCTACCGCAAACCTCGATC
* * * * **
21109972 TGGACTGATCTGATCTTAGACTGGGGATGAACTTTGTATGCCTAAATCAACCCACTAAATGAGCG
196 T-GAC-GATCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAATCAACCCACTAAACCAGCG
* * * * ** *
21110037 TGCGGGCTCTGAGCAGGCCGAAGAGGCATAATGCGTAAGCTGAGGATCGGCCCGATCCCTCTCTG
259 TACAGGCTCTGAGCAGGCCAAAGAGGCATAATACACAAGCTGAGGATCGGCCCGATCCCCCTCTG
* *
21110102 TGTGCTGTCGATCCCACTACCACAACCCTCGATCCGACTAGGGCTTAGACATGAAATGAACTCCG
324 TGTGCTGTCGATCCCACTACCACAACCCTCGATCCGACTAGGGCTTAAACATGAAATGAACTCCC
* * * *
21110167 TATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGTACTCAATCGGTCGGAGTGGCAGAATGTGA
389 TATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGTACTCAATCGGCCGGAGAGGCAGAATGTCA
21110232 AAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTGCTGGTATTACTGTCAT
454 AAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTGCTGGTATTACTGTCAT
*
21110295 AACCCTCAACCCGGTCCAATCTTACACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACT
1 AACCCTCAACCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
** * * * * *
21110360 CTGCATGCTTAAACCAACCCACGAAACGAGCGTGCGGATGCTTAGTCGGCCGGAGAGGCAAAATG
66 CCACATGCCTAAACCAACCCACGAAACGAGCGTGCAGACGCTCAGTCAGCCGGAGAGGCAAAATG
* * *
21110425 CGCAAGTCAGGGATCGACCCGGTTCCCCCCTGCGTGCTTTCGATCCGGCTACCGCAACCCTCGAT
131 CGCAAGTCAGGGATCGACCCGG-TCCCCCCTACGTGCTATCGATCCGGCTACCGCAAACCTCGAT
* * * *
21110490 CT-A-G-TCCGATCTTAGATTGGGAATGAACTCTGTATGCATAAGTTAACCCA-TGAAACCAGTG
195 CTGACGATCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAATCAACCCACT-AAACCAGCG
** *
21110551 TACAGG-TGCTGAGCCTGCCAAAGAGGCATAATACACAAG-TCGAGGATCGGCCCGGTCCCCCTC
259 TACAGGCT-CTGAGCAGGCCAAAGAGGCATAATACACAAGCT-GAGGATCGGCCCGATCCCCCTC
* *** * * * *
21110614 TGTGTGCTGTC-AGTGCTGTTGCCACAACCCTCGATCCGATTGGGGCTTAAACATGGAATGAACT
322 TGTGTGCTGTCGA-TCCCACTACCACAACCCTCGATCCGACTAGGGCTTAAACATGAAATGAACT
* * * * *
21110678 CCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGTCGGCCGGAGAGGCAGAATG
386 CCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGTACTCAATCGGCCGGAGAGGCAGAATG
* * * * *
21110743 -CACATGTCGGGGATCGGCCCGATCCCGCCTGCGTGCTG
451 TCA-AAGCCGGGGATCGACCCGATCCCCCCTACGTGCTG
21110781 CTGATCTTGC
Statistics
Matches: 410, Mismatches: 70, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
513 5 0.01
514 233 0.57
515 1 0.00
517 1 0.00
518 133 0.32
519 37 0.09
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (516 bp):
AACCCTCAACCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
CCACATGCCTAAACCAACCCACGAAACGAGCGTGCAGACGCTCAGTCAGCCGGAGAGGCAAAATG
CGCAAGTCAGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCGGCTACCGCAAACCTCGATC
TGACGATCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAATCAACCCACTAAACCAGCGTA
CAGGCTCTGAGCAGGCCAAAGAGGCATAATACACAAGCTGAGGATCGGCCCGATCCCCCTCTGTG
TGCTGTCGATCCCACTACCACAACCCTCGATCCGACTAGGGCTTAAACATGAAATGAACTCCCTA
TGCCTAAGCCAACCCACGAAACGAGAGTGCGGGTACTCAATCGGCCGGAGAGGCAGAATGTCAAA
GCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTGCTGGTATTACTGTCAT
Found at i:21110846 original size:26 final size:26
Alignment explanation
Indices: 21110817--21110869 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21110807 CCGGTCCGAT
*
21110817 CTTAGATTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* * *
21110843 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
21110869 C
1 C
21110870 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:21111728 original size:26 final size:26
Alignment explanation
Indices: 21111687--21111739 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21111677 CTGGTCTGAT
21111687 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
21111713 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
21111739 C
1 C
21111740 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21112644 original size:26 final size:26
Alignment explanation
Indices: 21112593--21112645 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21112583 CTGGTCTGAT
*
21112593 CTTAGACTGAGAATGAACTTCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
21112619 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGA-GAATGAACTCCATATG
21112645 C
1 C
21112646 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:21113498 original size:26 final size:26
Alignment explanation
Indices: 21113462--21113514 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21113452 CCAATTCGAT
*
21113462 CTTAGACT-GGGATTGAACTCTGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
21113488 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
21113514 C
1 C
21113515 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:21114222 original size:26 final size:26
Alignment explanation
Indices: 21114184--21114236 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21114174 GGCTCAAAAT
21114184 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
21114210 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
21114236 C
1 C
21114237 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:21114984 original size:26 final size:26
Alignment explanation
Indices: 21114955--21115007 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21114945 CCAGTCCGAT
21114955 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
21114981 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21115007 C
1 C
21115008 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21115021 original size:273 final size:273
Alignment explanation
Indices: 21114531--21115033 Score: 697
Period size: 273 Copynumber: 1.8 Consensus size: 273
21114521 GGGGCTTAGA
*
21114531 CATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAACGGATGTGCGGGCGCTCAGCCGACCG
1 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGATGTGCGGGCGCTCAGCCGACCG
* * *
21114596 GAGAGGCAGAACGCATAAGCCGGGGATCACCCCGTCCCCCCTGCGTGCTGCCGATCTTGCTGTCG
66 GAGAGACAGAACGCATAAGCCGGGGATCACCCCGTCCCCCCTGCGTCCTACCGATCTTGCTGTCG
* * * ** *
21114661 TAACCTTCAGTCCAATCTGATCTTAGAATGGGAATGAACTCTTTATGCTTAGACTGGGGATGATC
131 TAACCCTCAGTCCAATCCGATCTTAGAATGGAAATGAACTCCGTATGCTTAGACTGGGGATGAAC
*
21114726 TCCGCATGCCTAAGTTAACCCACGAAACAAGCATGCGGGCGCTTAGCCGATCGGGGAGGCCGATC
196 TCCGCATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTTAGCCGATCGGGGAGGCCGATC
21114791 GGAGAGGCATATT
261 GGAGAGGCATATT
* * * * *
21114804 CATGGAATGAACTCCCTATGCCTAAGCCAAGCTATGAAATGGATGTGCGGGTGCTCAGCCGGCCG
1 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGATGTGCGGGCGCTCAGCCGACCG
* * ** ** * *
21114869 GAGAGATAGAATGTGTAAGCCGGGGAT-AGGTTCGGT-CCCCCTGCGTCCTATCGATCTTGCTG-
66 GAGAGACAGAACGCATAAGCCGGGGATCA--CCCCGTCCCCCCTGCGTCCTACCGATCTTGCTGT
* * *
21114931 CAGTAACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATG
129 C-GTAACCCTCAGTCCAATCCGATCTTAGAATGGAAATGAACTCCGTATGCTTAGACTGGGGATG
* *
21114996 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATG
193 AACTCCGCATGCCTAAGTCAACCCACGAAACAAGCATG
21115034 TGGGTGCTCA
Statistics
Matches: 198, Mismatches: 29, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
272 2 0.01
273 193 0.97
274 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (273 bp):
CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGATGTGCGGGCGCTCAGCCGACCG
GAGAGACAGAACGCATAAGCCGGGGATCACCCCGTCCCCCCTGCGTCCTACCGATCTTGCTGTCG
TAACCCTCAGTCCAATCCGATCTTAGAATGGAAATGAACTCCGTATGCTTAGACTGGGGATGAAC
TCCGCATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTTAGCCGATCGGGGAGGCCGATC
GGAGAGGCATATT
Found at i:21121714 original size:26 final size:26
Alignment explanation
Indices: 21121684--21121736 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21121674 CCGGTCTGAT
*
21121684 CTTAGATTGGGAAAGAACTCTGAATG
1 CTTAGACTGGGAAAGAACTCTGAATG
* * *
21121710 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGAATG
21121736 C
1 C
21121737 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCTGAATG
Found at i:21121870 original size:550 final size:548
Alignment explanation
Indices: 21120815--21123637 Score: 2662
Period size: 550 Copynumber: 5.1 Consensus size: 548
21120805 ATTTTTTACG
* * * * * * * *
21120815 TATGCTTAGACAGGGAATGAATTTCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCGTT
1 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCT
* ** * * * ** ** * * * * **
21120880 CAGTTGGTCGGAAAGGCAGAATGCGTAAG-TCGAAGACCGGTTCGATCCCTCTTACGTGCTACCG
66 AAG-CAGCCAGAGAGGCAGAATGCACAAGCT-GGGGATCGGCTCGATCCCCCCTACGTGCTGTCG
* * * ** * * * * *
21120944 ATCCAGTTACCACAACCCTCTTTTCGGTTCGATCTTAGACTGAGAATCAACTTCGTATGCTTAAG
129 ATCCTGTTGCCGCAACCCTCGATTCGATCCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAG
* * * * * * * *
21121009 TCAACCCATGAAACGAGCGTTTGGGTACTGAGCCTACCGGAGAGGCAGAATACGCAAGCCTGGGA
194 TCAACCCATGAAACGAGCGTTCGGGCACTGAGCCGACCCGAGATGCAGAATGCACAAGCCGGGGA
* * * * * * *
21121074 TTGGTCCGGTCATCCTGCGTGTTACCGATCCTGTTACCGCAACCCTCAGTCTGGT-TCGATCTTA
259 TCGGTCCGGTC-CCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCT-GATCTTA
* * *
21121138 TACTGGGAATTAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
322 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * * * ** *
21121203 AACGAGCGTGCAGGCGCTTAGCTGGCCTATGAGGCCGATCAGAGAGACAAAATATGCAAGCCGGG
387 AACGAGCGTGCGGGCGCTCAGCTGGCCTATGAGGCCGACCAGAAAGACAGAATGCGCAAGTCGGG
* * * * * * *
21121268 GATCGGCTCATTCCCCCCTGCGTGCTACCGATCTTGTTGCTGGTCCTGCTACCGCAACCCTCGGT
452 GATCGACTCATTCCCCTCTGCGTGCTGCCGATCTTGCTGTTGGTCCTGCTGCCGTAACCCTCGGT
* *
21121333 TCGGTCTGATCTTTCACTGGGAATGAACTCCA
517 CCGGTCTGATCTTTGACTGGGAATGAACTCCA
* * * * *
21121365 TATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCATGCGGGTGCT
1 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCT
* * * * *
21121430 AAGCTAGCCAGAGAGGCAGAATGTACAAGCCGAGGATTGG-TCCGGTCCCCCCTACGTGCTGTCG
66 AAGC-AGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCT-CGATCCCCCCTACGTGCTGTCG
* * * *
21121494 ATCCTGTTGCCGTAACCCTCGATTTGATCTGATCTTAGACTGGGAATCAACTCCGTATGCATAAG
129 ATCCTGTTGCCGCAACCCTCGATTCGATCCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAG
* * * * * * *
21121559 TCAACCCATGAAATGAGAGTTCGAGCACTGAACGGACCCGAGATGCAGAATGTACAAGTCGGGGA
194 TCAACCCATGAAACGAGCGTTCGGGCACTGAGCCGACCCGAGATGCAGAATGCACAAGCCGGGGA
* * * * * * *
21121624 TCGGTCTGGTCTCCCTACGTGCTGTTGATCCTACTGCCGTAACCCTCGGTCCGGTCTGATCTTAG
259 TCGGTCCGGTC-CCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAG
* * * * * *
21121689 ATTGGGAAAGAACTCTGAATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAA
323 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
** * * * *
21121754 ATAAGCGTGTGGGCGCTCAACTGGCCTATGAGGCCGACC-GAAAAGACAAAATGCACAAG-CTGG
388 ACGAGCGTGCGGGCGCTCAGCTGGCCTATGAGGCCGACCAG-AAAGACAGAATGCGCAAGTC-GG
* * * * *
21121817 GGATCGGCTCATTCCCCTATGCGTGCTGTCGATCTTGCTGTTGGTCGTGCTACCGTAACCCTCGG
451 GGATCGACTCATTCCCCTCTGCGTGCTGCCGATCTTGCTGTTGGTCCTGCTGCCGTAACCCTCGG
* *
21121882 TCCGGTCCGATCTTTGACTGGGAATGAACTCCG
516 TCCGGTCTGATCTTTGACTGGGAATGAACTCCA
* * * * *
21121915 CATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCATGAAACGAGCGTATGGGCGTT
1 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCT
* *** * *
21121980 AAGCCGGTTGGAGAGGCAGAATGCACAAGCTGGGGACCAGCTCGATCCCCCCTACGTGCTGTCGA
66 AAG-CAGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGA
* * * *
21122045 TCCTGTTACCGCAACCCTCGGTCCGATCCGATCTTAGAATGGGAATCAACTCCGTATGCCTAAGT
130 TCCTGTTGCCGCAACCCTCGATTCGATCCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGT
* *
21122110 CAACCCATGAAACGAGCGTTCGGGCACTGAGCCGA-TCGAAGATGCAGAATGAACAAGCCGGGGA
195 CAACCCATGAAACGAGCGTTCGGGCACTGAGCCGACCCG-AGATGCAGAATGCACAAGCCGGGGA
* * * * ** * *
21122174 TC-GACTCGATCCCTCTATGTGCTATCGATGCTGCTACCATAACCCTCGGTTTGGTCCGATCTTA
259 TCGGTC-CGGTCCC-CTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTA
* *
21122238 GATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
322 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * * * ** **
21122303 AACGAGCATGCGGGCACTCAGCCGACCTATGAGGCCGACTAGAAAGACAGAATGCATAAGTCAAG
387 AACGAGCGTGCGGGCGCTCAGCTGGCCTATGAGGCCGACCAGAAAGACAGAATGCGCAAGTCGGG
* ** * * * *
21122368 GATCGACTCGTT-CCCTCCTGCGTGCTGTTGATCCTGCTGTTGGTCCTACTGTCGTAACCCTCGA
452 GATCGACTCATTCCCCT-CTGCGTGCTGCCGATCTTGCTGTTGGTCCTGCTGCCGTAACCCTCGG
*
21122432 TCCGGTCTGATCTTAGACTGGGAATGAACTCCA
516 TCCGGTCTGATCTTTGACTGGGAATGAACTCCA
* * * * *
21122465 TATGCTTAGACATGGAATGAA-TACC-TATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGT
1 TATGCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGC
* * * * * *
21122528 TCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGC-CTAGT-CCCCCTACGTGCTGTC
65 TAAGCAG-CCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCTCGA-TCCCCCCTACGTGCTGTC
* *
21122591 GATCCTGCTGCCGCAACCCTC-AGTTCGATCCAATCTTAGACTAGGAATGAACTCTGTATTCTTA
128 GATCCTGTTGCCGCAACCCTCGA-TTCGATCCGATCTTAGACT-GG---G-A------A-TC--A
* * * * *
21122655 GACCTGGTATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATTCGAGCATTGAGCTGGC
178 -A-C-----T---C-C-GTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTGAGCCGAC
* * *** * * * * * * *
21122720 CTGAGATACAGAATGTGTAAGCTGGGGATCAGCCCGGTCCCTCTGCGTGCTGTCGATCCTGTTAT
231 CCGAGATGCAGAATGCACAAGCCGGGGATCGGTCCGGTCCC-CTACGTGCTATCGATCCTGCTAC
** *
21122785 CGCAACCCTC-GTCTGGT-TCGATCTTAGACTGGGAATGAACTGTGTACGCTTAGACTGGGGATG
295 CGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
* ** * * *
21122848 AACTCTGTATGCCTAAGTCAACCCATGAAATAAGCGTGCGAGTGCTCAGCTGGCCTATGAGGTCG
359 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCTATGAGGCCG
* * * * * * *
21122913 GCCAGAGAGATAGAATGCGCAAGTCGGGGATCAACTCATTCCCCTCTGTGTACTGCCGATCTTGT
424 ACCAGAAAGACAGAATGCGCAAGTCGGGGATCGACTCATTCCCCTCTGCGTGCTGCCGATCTTGC
* ** * * * *
21122978 TGCTGGTCCTGCTGCCACAACCCTCGGTCCGATCAGATCTTTGATTGGGAATGAACTCCG
489 TGTTGGTCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTTGACTGGGAATGAACTCCA
* * * * *
21123038 TATGCTTAGACATAGAATGAACTCCGTATGCCCAATCCAACCCACGAAATGAACGTACGGGCGCT
1 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCT
* * * ** * *
21123103 AAGCCGATC-GAAGAGGCAGAATGCACAAGTTGGGGATCGGCTCGATCCTTCCTACATGTTGTCG
66 AAGCAG-CCAG-AGAGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCCCCCTACGTGCTGTCG
* * * * * *
21123167 ATTCTGTTGCTGCAACCCTCGGTTCGATCCAATCTTAAACTGGGAATCAACTCTGTATGCCTAAG
129 ATCCTGTTGCCGCAACCCTCGATTCGATCCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAG
* * * * *
21123232 TCAACCCACGAAATGAGCGTTCGGGCAATGAG-CGACCAGAGATGCAGAATGCACAAGCCAGGGA
194 TCAACCCATGAAACGAGCGTTCGGGCACTGAGCCGACCCGAGATGCAGAATGCACAAGCCGGGGA
* * * *
21123296 TCGGTCCGGTCCCCCTACGTGCTATCGATCCTGCTATCGCAACCCTTGATCCGGTCTGATCTTAG
259 TCGGTCCGGT-CCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAG
* *
21123361 ACTGGGAATAAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
323 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * ** * *
21123426 ACGAGCGTACGGGCACTCAGCAT-GCCTATGAGGCCAACTGGAAAGACAGAATGCGTAAGTCAGG
388 ACGAGCGTGCGGGCGCTCAGC-TGGCCTATGAGGCCGACCAGAAAGACAGAATGCGCAAGTCGGG
* * * * * * * * *
21123490 GATCGACTCGTTCCCTCCCTGCGTACTGCTGATCCTGCTGTTGGTCTTACTGCCATAACCCTCGA
452 GATCGACTCATTCCC-CTCTGCGTGCTGCCGATCTTGCTGTTGGTCCTGCTGCCGTAACCCTCGG
* *
21123555 TCCAGTCTGATCTTAGACTGGGAATGAACTCCA
516 TCCGGTCTGATCTTTGACTGGGAATGAACTCCA
* * * *
21123588 TAAGCTTAGACATGGAATGAA-TACC-TATGCTTAAGCTAACCCATGAAACG
1 TATGCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACG
21123638 GGAGGCAGAA
Statistics
Matches: 1847, Mismatches: 366, Indels: 121
0.79 0.16 0.05
Matches are distributed among these distances:
548 115 0.06
549 274 0.15
550 993 0.54
551 6 0.00
552 1 0.00
553 1 0.00
554 1 0.00
559 2 0.00
560 3 0.00
561 1 0.00
562 1 0.00
563 3 0.00
564 2 0.00
569 1 0.00
570 1 0.00
571 1 0.00
572 1 0.00
573 217 0.12
574 170 0.09
575 53 0.03
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (548 bp):
TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCT
AAGCAGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGAT
CCTGTTGCCGCAACCCTCGATTCGATCCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGTC
AACCCATGAAACGAGCGTTCGGGCACTGAGCCGACCCGAGATGCAGAATGCACAAGCCGGGGATC
GGTCCGGTCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
AGCGTGCGGGCGCTCAGCTGGCCTATGAGGCCGACCAGAAAGACAGAATGCGCAAGTCGGGGATC
GACTCATTCCCCTCTGCGTGCTGCCGATCTTGCTGTTGGTCCTGCTGCCGTAACCCTCGGTCCGG
TCTGATCTTTGACTGGGAATGAACTCCA
Found at i:21122270 original size:26 final size:26
Alignment explanation
Indices: 21122234--21122286 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21122224 TTGGTCCGAT
*
21122234 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21122260 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21122286 C
1 C
21122287 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21122666 original size:26 final size:26
Alignment explanation
Indices: 21122624--21122675 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21122614 TTCGATCCAA
21122624 TCTTAGACTAGGAATGAACTCTGTAT
1 TCTTAGACTAGGAATGAACTCTGTAT
*
21122650 TCTTAGACCT-GGTATGAACTCTGTAT
1 TCTTAGA-CTAGGAATGAACTCTGTAT
21122676 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCTGTAT
Found at i:21122843 original size:26 final size:26
Alignment explanation
Indices: 21122807--21122856 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21122797 CTGGTTCGAT
*
21122807 CTTAGACTGGGAATGAACTGTGTACG
1 CTTAGACTGGGAATGAACTCTGTACG
*
21122833 CTTAGACTGGGGATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
21122857 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACG
Found at i:21122869 original size:182 final size:183
Alignment explanation
Indices: 21122545--21122877 Score: 465
Period size: 182 Copynumber: 1.8 Consensus size: 183
21122535 ATCGGAGAGG
* * *
21122545 CAGAATGCGCAAGCTGGGGATCGGCCTAGTCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCC
1 CAGAATGCGCAAGCTGGGGATCAGCCCAGTCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCC
** *
21122610 TCAGTTCGATCCAATCTTAGACTAGGAATGAACTCTGTATTCTTAGACCTGGTATGAACTCTGTA
66 TCAGTTCGATCCAATCTTAGACTAGGAATGAACTCTGTACGCTTAGACCTGGGATGAACTCTGTA
21122675 TGCCTAAGTCAACCCATGAAACGAGCATTCGAGCATTGAGCTGGCCTGAGATA
131 TGCCTAAGTCAACCCATGAAACGAGCATTCGAGCATTGAGCTGGCCTGAGATA
* * * * * * *
21122728 CAGAATGTGTAAGCTGGGGATCAGCCCGGTCCCTCTGCGTGCTGTCGATCCTGTTATCGCAACCC
1 CAGAATGCGCAAGCTGGGGATCAGCCCAGTCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCC
* * * * *
21122793 TC-G-TCTGGTTCGATCTTAGACTGGGAATGAACTGTGTACGCTTAGA-CTGGGGATGAACTCTG
66 TCAGTTC-GATCCAATCTTAGACTAGGAATGAACTCTGTACGCTTAGACCT-GGGATGAACTCTG
21122855 TATGCCTAAGTCAACCCATGAAA
129 TATGCCTAAGTCAACCCATGAAA
21122878 TAAGCGTGCG
Statistics
Matches: 130, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
181 4 0.03
182 69 0.53
183 57 0.44
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (183 bp):
CAGAATGCGCAAGCTGGGGATCAGCCCAGTCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCC
TCAGTTCGATCCAATCTTAGACTAGGAATGAACTCTGTACGCTTAGACCTGGGATGAACTCTGTA
TGCCTAAGTCAACCCATGAAACGAGCATTCGAGCATTGAGCTGGCCTGAGATA
Found at i:21123385 original size:26 final size:26
Alignment explanation
Indices: 21123356--21123408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21123346 CCGGTCTGAT
21123356 CTTAGACT-GGGAATAAACTCCGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
*
21123382 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
21123408 C
1 C
21123409 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:21123755 original size:367 final size:367
Alignment explanation
Indices: 21123301--21123998 Score: 885
Period size: 367 Copynumber: 1.9 Consensus size: 367
21123291 AGGGATCGGT
* *
21123301 CCGGTCCCCCTACGTGCTATCGATCCTGCTATCGCAACCCTTGATCCGGTCTGATCTTAGACTGG
1 CCGGTCCCCCTACGTGCTACCGATCCTGCTACCGCAACCCTTGATCCGGTCTGATCTTAGACTGG
* * *
21123366 GAATAAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
66 AAATAAACTCCGTATGCTTAGACTAGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAG
* *
21123431 CGTACGGGCACTCAG-CATGCC-TATGAGGCCAA-CTGGAAAGACAGAATGCGTAAGT-CAGGGA
131 CGTACGGGCACTCAGTC-GGCCTTA-GAGGCCAATC-AGAAAGACAGAATGCGTAA-TACAGGGA
* * * * * *
21123492 TCGACTCG-TTCCCTCCCTGCGTACTGCTGATCCTGCTGTTGGTCTTACTGCCATAACCCTC-GA
192 TCGACCCGATCCCCT-CCTACGTACTGCTGATCCTGCTGCTGGTCCTACTACCATAACCCTCAGA
* *
21123555 TCCAGTCTGATCTTAGACTGGGAATGAACTCCATAAGCTTAGACATGGAATGAA-TACC-TATGC
256 -CCAGTCTGATCTTAGACTGGGAATGAACTCCATAAGCTTAGACATAGAATAAACT-CCGTATGC
* *
21123618 TTAAGCTAACCCATGAAACGGGAGGCAGAATGTGCAAGCTGGGGATTGC
319 CTAAGCCAACCCATGAAACGGGAGGCAGAATGTGCAAGCTGGGGATTGC
*
21123667 CCGGTCCCCCCTACGTGCTACCGATCCTGCTACCGCAA-CCTTCGATCCGGT-TCGATCTTAGAT
1 CCGGT-CCCCCTACGTGCTACCGATCCTGCTACCGCAACCCTT-GATCCGGTCT-GATCTTAGAC
* * * * *
21123730 TGGAAATGAACTCCGTATTCTTAGACTGGGGATGAACTCTGCATGCCTAAGTTAACCCACGAAAC
63 TGGAAATAAACTCCGTATGCTTAGACTAGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAAC
* ** * * * * *
21123795 GAGCGTGCGGGTGCTCAGTCGGCCTTAGAGGTCGATCAGAGAGGCAGAATTCGTAATACAGGGAT
128 GAGCGTACGGGCACTCAGTCGGCCTTAGAGGCCAATCAGAAAGACAGAATGCGTAATACAGGGAT
* * * * *
21123860 CGGCCCGATCCCCTCCTACGTGCTGTTGATCTTGCTGCTGGTCCTACTACCGTAACCCTCAGACC
193 CGACCCGATCCCCTCCTACGTACTGCTGATCCTGCTGCTGGTCCTACTACCATAACCCTCAGACC
* * *
21123925 GGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACATAGAATAAACTCCGTATGCCTAA
258 AGTCTGATCTTAGACTGGGAATGAACTCCATAAGCTTAGACATAGAATAAACTCCGTATGCCTAA
21123990 GCCAACCCA
323 GCCAACCCA
21123999 CAAAACGAGC
Statistics
Matches: 282, Mismatches: 39, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
366 11 0.04
367 243 0.86
368 28 0.10
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (367 bp):
CCGGTCCCCCTACGTGCTACCGATCCTGCTACCGCAACCCTTGATCCGGTCTGATCTTAGACTGG
AAATAAACTCCGTATGCTTAGACTAGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAG
CGTACGGGCACTCAGTCGGCCTTAGAGGCCAATCAGAAAGACAGAATGCGTAATACAGGGATCGA
CCCGATCCCCTCCTACGTACTGCTGATCCTGCTGCTGGTCCTACTACCATAACCCTCAGACCAGT
CTGATCTTAGACTGGGAATGAACTCCATAAGCTTAGACATAGAATAAACTCCGTATGCCTAAGCC
AACCCATGAAACGGGAGGCAGAATGTGCAAGCTGGGGATTGC
Found at i:21124290 original size:159 final size:159
Alignment explanation
Indices: 21123958--21124316 Score: 386
Period size: 159 Copynumber: 2.3 Consensus size: 159
21123948 AACTCCATAT
* * *
21123958 GCTTAGACATAGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACAGGCGCTCAA
* **
21124023 CCGACCGGAGAGGCAGAATGCGTAAGCTGGAGACAAGCCCGATCCCTCCCTGCGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGTAAGCAGGAGACAAGCCCGATCCCTCCCTGCGTGCTACCGATC
* * * *
21124088 CTGCTGCCGCAACCCTCAGTCCTATCCAA
131 CCGCTACCACAACCCTCAGTCCGATCCAA
* * * * * *
21124117 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCAGGCGTTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACAGGCGCTCA
* * * * * *
21124181 ACTGATCGGAGAGGCATAATGCGTAAGCCAGG-GATC-GGCCCGGTCCCTCTCTGCGTGCTACCG
65 ACCGACCGGAGAGGCAGAATGCGTAAG-CAGGAGA-CAAGCCCGATCCCTCCCTGCGTGCTACCG
* * *
21124244 GTCCCGCTACCACAACCCTC-GATCCGA-CTGAG
128 ATCCCGCTACCACAACCCTCAG-TCCGATC-CAA
* * *
21124276 GCTTAAACATGGAATGAACTCCCTATACCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
21124317 TGAAACAGGC
Statistics
Matches: 164, Mismatches: 30, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
158 3 0.02
159 156 0.95
160 5 0.03
ACGTcount: A:0.27, C:0.32, G:0.22, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACAGGCGCTCAA
CCGACCGGAGAGGCAGAATGCGTAAGCAGGAGACAAGCCCGATCCCTCCCTGCGTGCTACCGATC
CCGCTACCACAACCCTCAGTCCGATCCAA
Found at i:21124476 original size:26 final size:26
Alignment explanation
Indices: 21124435--21124487 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21124425 TCAGTCCAAT
*
21124435 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
21124461 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
21124487 C
1 C
21124488 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:21124649 original size:26 final size:26
Alignment explanation
Indices: 21124620--21124672 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21124610 CCGGTCTGAT
*
21124620 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21124646 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21124672 C
1 C
21124673 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21125031 original size:26 final size:26
Alignment explanation
Indices: 21124995--21125046 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21124985 TTCGATCCAA
*
21124995 TCTTGGACTAGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
* *
21125021 TCTTAGACTAGGGATGAACTCTGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
21125047 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:21126236 original size:159 final size:156
Alignment explanation
Indices: 21125820--21126249 Score: 382
Period size: 159 Copynumber: 2.7 Consensus size: 156
21125810 ACTCCATATA
* *
21125820 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGCGTGTGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTG-CGGTGCTCAAC
* * * * * * *
21125885 CGACCGAAGAGGCAGAATGCGCAAGCTGGAGATTGGCCCGGTCTCTCCCTGCGTGCTGTCGATCC
65 CGGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTC-C-CCCTGCGTGCTGTCGATCC
* **** * *
21125950 TACTTTTGCAACCCTCAGTCCTGTCCGAT
128 CACTGCCACAACCCTCAGTCCTGACCGAG
** * * * * *
21125979 CTTAGAC-TGGGAATGAACTCCGTATGCCTAATTCAACCCACGAAATGAGCGTTCAGGAGTTAAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC-GGTGCTCAA
* * ** * ** * *
21126043 CC-GATCGGAGAGGCATAATGCATAAACCAAGGATCGGCCCGGTCCCCTTCTGCGTGTTGTCGGT
64 CCGGCT-GGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCC--CTGCGTGCTGTCGAT
* * *
21126107 CCCGCTGCCACAACCCTC-GATCC-GACTGGGG
126 CCCACTGCCACAACCCTCAG-TCCTGAC-CGAG
* * *
21126138 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGTCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGT-GCTCAAC
*
21126203 CGGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
65 CGGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC
21126250 CTGCATGCAT
Statistics
Matches: 209, Mismatches: 52, Indels: 22
0.74 0.18 0.08
Matches are distributed among these distances:
157 3 0.01
158 7 0.03
159 196 0.94
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGTGCTCAACC
GGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCCAC
TGCCACAACCCTCAGTCCTGACCGAG
Found at i:21126337 original size:26 final size:26
Alignment explanation
Indices: 21126297--21126348 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21126287 CGGTCTGATA
21126297 TTAGACAGGGAATGAACTCCGTATGC
1 TTAGACAGGGAATGAACTCCGTATGC
* *
21126323 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACAGGGAATGAACTCCGTATGC
21126349 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCGTATGC
Found at i:21126519 original size:26 final size:26
Alignment explanation
Indices: 21126481--21126533 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21126471 CTGGTCTGAT
*
21126481 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21126507 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21126533 C
1 C
21126534 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21126605 original size:185 final size:183
Alignment explanation
Indices: 21126137--21126606 Score: 505
Period size: 185 Copynumber: 2.5 Consensus size: 183
21126127 TCCGACTGGG
* * *
21126137 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGTCGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGT-GCTCAG
* * * * * *
21126202 CCGGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCATCCAATCT
65 CCGACCGGAGAGGCAAGATGCACAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCATCCAATCC
* *
21126267 TGCTACCGTAACCCTCTGTTCGGTCTGATATTAGACAGGGAATGAACTCCGTAT
130 TACTACCGTAACCCTCGGTTCGGTCTGATATTAGACAGGGAATGAACTCCGTAT
* * * * * *
21126321 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCATGCGGGCGCTTAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC-GGTGCTCAG
* * * * * *** * * * **
21126386 CCTACCGGAGA-GCCAGAATGCATAAATAGGGGATCGGTTTGATCCCCTTCTGCGTGC-TGTCGG
65 CCGACCGGAGAGGCAAG-ATGCACAAGTCGGGGATCGGCCCGATCCCC-CCTGCATGCAT-CCAA
*** * * *
21126449 TCCTACTTTTGTAACCCTCGG-TCTGGTCTGATCTTAGACTGGGAATGAATTCCGTAT
127 TCCTACTACCGTAACCCTCGGTTC-GGTCTGATATTAGACAGGGAATGAACTCCGTAT
*
21126506 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGATGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGG-TGCTCAG
* *
21126571 TCGACCAGAGAGGCAAGATGCACAAGTCGGGGATCG
65 CCGACCGGAGAGGCAAGATGCACAAGTCGGGGATCG
21126607 AACGGATGAT
Statistics
Matches: 229, Mismatches: 50, Indels: 13
0.78 0.17 0.04
Matches are distributed among these distances:
183 3 0.01
184 88 0.38
185 134 0.59
186 4 0.02
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (183 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGTGCTCAGC
CGACCGGAGAGGCAAGATGCACAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCATCCAATCCT
ACTACCGTAACCCTCGGTTCGGTCTGATATTAGACAGGGAATGAACTCCGTAT
Found at i:21128149 original size:196 final size:196
Alignment explanation
Indices: 21127908--21128279 Score: 557
Period size: 196 Copynumber: 1.9 Consensus size: 196
21127898 CTGCTGTCGT
* * *
21127908 AACCCTCGGTCTGGTCCCTTCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAAC
1 AACCCTCAGTCTGGTCCCATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAAC
* * * * * *
21127972 TCCGTTTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAAT
65 TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAAT
* * * **
21128037 GTGTAAGTCGAGGATCGACTCGGTCCCCCCTGGGTGCTGCCGATCCTGCTGTTGATCTTGCAACT
130 GCGTAAGTCGAGGACCGACTCGGTCACCCCTACGTGCTGCCGATCCTGCTGTTGATCTTGCAACT
21128102 AC
195 AC
* *
21128104 AACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACT
1 AACCCTCAGTCTGGTCCCATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACT
21128169 CCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATG
66 CCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATG
* * *
21128234 CGTAAGTCGGGGACCGGCTCGGTCACCCCTACGTGCTGTCGATCCT
131 CGTAAGTCGAGGACCGACTCGGTCACCCCTACGTGCTGCCGATCCT
21128280 ATTGCTACAA
Statistics
Matches: 156, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
196 155 0.99
197 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
AACCCTCAGTCTGGTCCCATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACT
CCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATG
CGTAAGTCGAGGACCGACTCGGTCACCCCTACGTGCTGCCGATCCTGCTGTTGATCTTGCAACTA
C
Found at i:21128153 original size:26 final size:26
Alignment explanation
Indices: 21128124--21128176 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21128114 CTGGTTCGAT
*
21128124 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21128150 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21128176 C
1 C
21128177 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21128498 original size:159 final size:159
Alignment explanation
Indices: 21128150--21128672 Score: 565
Period size: 159 Copynumber: 3.3 Consensus size: 159
21128140 ACTCTGTATG
* * * * *
21128150 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGTGCTGAG
* * * * * * *
21128214 CCGATCGGAGAGGCAAAATGCGTAAGTCGGGGA-CCGGCTCGGTCACCC-CTACGTGCTGTCGAT
65 CCGATCGGAGAGGCATAATGCGAAAGTCGAGGATCAGCCT-GGTCCCCCTCTACGTGTTGTCGAT
** * ** * *
21128277 CCTATTGCTACAACCCTC-GCTGTGGTCCGAT
129 CCTGCTGCCACAACCCTCAG-TCCGATCCAAT
* * * *
21128308 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTTCAGGTGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGTGCTGAGC
* * *
21128373 TGATCGGAGAGGCATAATGCGAAAGTCGAGGATCAGCCTGGTCCCCCTCTACGTGTTGTCGGTCT
66 CGATCGGAGAGGCATAATGCGAAAGTCGAGGATCAGCCTGGTCCCCCTCTACGTGTTGTCGATCC
*
21128438 TGCTACCACAACCCTCAGTCCGATCCAAT
131 TGCTGCCACAACCCTCAGTCCGATCCAAT
* * * *
21128467 CTTAGACTGGGAAAGAACTCCGTATGTCTAAGTCCACCTATGAAACGAGTGTTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGTGCTGAGC
* * **
21128532 CGATCGGAGAGGCATAATGTGATAGTCGAGGATCAGCCTGGTCCCCCTCTGTGTGTTGTCGATCC
66 CGATCGGAGAGGCATAATGCGAAAGTCGAGGATCAGCCTGGTCCCCCTCTACGTGTTGTCGATCC
* * ****
21128597 CGCTGCCACAACCTTCAGTCCGA-CTGGGG
131 TGCTGCCACAACCCTCAGTCCGATC-CAAT
*
21128626 CTTAGACAT-GGAATGAACTCAC-TATGCCTAAGCCAACCCATGAAACG
1 CTTAGAC-TGGGAATGAACTC-CGTATGCCTAAGTCAACCCATGAAACG
21128673 GGCGTGCGGC
Statistics
Matches: 304, Mismatches: 54, Indels: 13
0.82 0.15 0.04
Matches are distributed among these distances:
157 1 0.00
158 90 0.30
159 210 0.69
160 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGTGCTGAGC
CGATCGGAGAGGCATAATGCGAAAGTCGAGGATCAGCCTGGTCCCCCTCTACGTGTTGTCGATCC
TGCTGCCACAACCCTCAGTCCGATCCAAT
Found at i:21128698 original size:159 final size:158
Alignment explanation
Indices: 21128149--21128744 Score: 424
Period size: 159 Copynumber: 3.8 Consensus size: 158
21128139 AACTCTGTAT
* * *
21128149 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CCAACCCATGAAACGAGCGTGCGGGCGCTC
1 GCTTAGAC-TGGGAAAGAACTCCGTATGCCTAAGTCC-ACCCATGAAACGAGCGTGCGGCCACTC
* * * * * * ** *
21128212 AGCCGATCGGAGAGGCAAAATGCGTAAGTCGGGGA-CCGGCTCGGTCACCC-CTACGTGCTGTCG
64 AGCCGATCGGAGAGGCATAATGAG-AAGTCGAGGATCAGCCT-GGTCCCCCTCTGTGTGTTGTCG
*** * * ** * *
21128275 ATCCTATTGCTACAACCCTC-GCTGTGGTCCGA
127 ATCCCGCTACCACAACCCTCAG-TCCGATCCAA
* * * * * * * ** *
21128307 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTTCAGG-TGCTGA
1 GCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCCACCCATGAAACGAGCGTGC-GGCCACTCA
* * * ** *
21128371 ACTGATCGGAGAGGCATAATGCGAAAGTCGAGGATCAGCCTGGTCCCCCTCTACGTGTTGTCGGT
65 GCCGATCGGAGAGGCATAATGAG-AAGTCGAGGATCAGCCTGGTCCCCCTCTGTGTGTTGTCGAT
**
21128436 CTTGCTACCACAACCCTCAGTCCGATCCAA
129 CCCGCTACCACAACCCTCAGTCCGATCCAA
* * * * * *** *
21128466 TCTTAGACTGGGAAAGAACTCCGTATGTCTAAGTCCACCTATGAAACGAGTGTTCGGGTGCTGAG
1 GCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCCACCCATGAAACGAGCGTGCGGCCACTCAG
*
21128531 CCGATCGGAGAGGCATAATGTGATAGTCGAGGATCAGCCTGGTCCCCCTCTGTGTGTTGTCGATC
66 CCGATCGGAGAGGCATAATGAGA-AGTCGAGGATCAGCCTGGTCCCCCTCTGTGTGTTGTCGATC
* * ***
21128596 CCGCTGCCACAACCTTCAGTCCGA-CTGGG
130 CCGCTACCACAACCCTCAGTCCGATC-CAA
* * *
21128625 GCTTAGACAT-GGAATGAACTCAC-TATGCCTAAG-CCAACCCATGAAACGGGCGTGCGGCCATT
1 GCTTAGAC-TGGGAAAGAACTC-CGTATGCCTAAGTCC-ACCCATGAAACGAGCGTGCGGCCACT
* * * * *
21128687 CAGTCGGTCGGAGAGGCAGAATGAGCAAGTC-AGGGATCAGCCCGATCCCCC-CTGTGTG
63 CAGCCGATCGGAGAGGCATAATGAG-AAGTCGA-GGATCAGCCTGGTCCCCCTCTGTGTG
21128745 CAACTGATCT
Statistics
Matches: 360, Mismatches: 64, Indels: 28
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.00
158 99 0.28
159 256 0.71
160 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCCACCCATGAAACGAGCGTGCGGCCACTCAG
CCGATCGGAGAGGCATAATGAGAAGTCGAGGATCAGCCTGGTCCCCCTCTGTGTGTTGTCGATCC
CGCTACCACAACCCTCAGTCCGATCCAA
Found at i:21128813 original size:26 final size:26
Alignment explanation
Indices: 21128784--21128836 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21128774 CTGGTCTGAT
21128784 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTACT-TATG
*
21128810 CTTAGACTGGGGATGAACTACTTATG
1 CTTAGACTGGGAATGAACTACTTATG
21128836 C
1 C
21128837 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACTTATG
Found at i:21128891 original size:13 final size:13
Alignment explanation
Indices: 21128873--21128899 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21128863 TGGGCGCTCA
21128873 GTCGATCGGAGAG
1 GTCGATCGGAGAG
21128886 GTCGATCGGAGAG
1 GTCGATCGGAGAG
21128899 G
1 G
21128900 CAGAATGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.48, T:0.15
Consensus pattern (13 bp):
GTCGATCGGAGAG
Found at i:21129347 original size:26 final size:26
Alignment explanation
Indices: 21129311--21129363 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21129301 CTGATCTGAT
*
21129311 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21129337 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21129363 C
1 C
21129364 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21130080 original size:26 final size:26
Alignment explanation
Indices: 21130042--21130097 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
21130032 CATTCAAACT
21130042 CTTAGACTAGGAATG-AACTCAGTATG
1 CTTAGACTAGGAATGAAACTC-GTATG
*
21130068 CTTAGACCT-GGAATGAAATTCGTATG
1 CTTAGA-CTAGGAATGAAACTCGTATG
21130094 CTTA
1 CTTA
21130098 AGCTAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAACTCGTATG
Found at i:21130495 original size:159 final size:159
Alignment explanation
Indices: 21130142--21130487 Score: 494
Period size: 159 Copynumber: 2.2 Consensus size: 159
21130132 CCGACCGAAG
* **
21130142 AGGCAGAATGCGTAAACCGGGGATCGGCCCAGTCCCCCTCAACGTGCTGCCGGTCCCGCTACCAC
1 AGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCTCAACGTGCAACCGGTCCCGCTACCAC
21130207 AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
66 AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* ** * * * *
21130272 TGGGCGTGCGGGCACTTTGTCGGTCGGAG
131 CGGGCGTGCGGGCACTCAGCCGGGCAGAA
* * * * ** * *
21130301 AGGCAGGATACGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGCGTGCAACTGGTCCCGCTGCCAC
1 AGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCTCAACGTGCAACCGGTCCCGCTACCAC
* *
21130366 TACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
66 AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
*
21130431 CGGGCGTGCGGGCGCTCAGCCGGGCAGAA
131 CGGGCGTGCGGGCACTCAGCCGGGCAGAA
*
21130460 AGGCAAAATGCGTAAGCCGGGGATCGGC
1 AGGCAGAATGCGTAAGCCGGGGATCGGC
21130488 TCGGTCCCTC
Statistics
Matches: 161, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
159 161 1.00
ACGTcount: A:0.22, C:0.32, G:0.30, T:0.16
Consensus pattern (159 bp):
AGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCTCAACGTGCAACCGGTCCCGCTACCAC
AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGGCGTGCGGGCACTCAGCCGGGCAGAA
Found at i:21130575 original size:26 final size:26
Alignment explanation
Indices: 21130546--21130599 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
21130536 AGTCCGATCC
*
21130546 TAGATT-GGAAATGAACTCCGTTTGCT
1 TAGATTAGG-AATGAACTCCGTATGCT
*
21130572 TAGATTAGGGATGAACTCCGTATGCT
1 TAGATTAGGAATGAACTCCGTATGCT
21130598 TA
1 TA
21130600 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (26 bp):
TAGATTAGGAATGAACTCCGTATGCT
Found at i:21131291 original size:26 final size:26
Alignment explanation
Indices: 21131253--21131305 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21131243 GGCTCAAACT
21131253 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21131279 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21131305 C
1 C
21131306 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21131625 original size:26 final size:26
Alignment explanation
Indices: 21131596--21131647 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
21131586 CCGGTCCAAT
21131596 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21131622 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21131648 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21132758 original size:26 final size:26
Alignment explanation
Indices: 21132720--21132772 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21132710 GGCTAAAACT
21132720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21132746 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21132772 C
1 C
21132773 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21133103 original size:26 final size:26
Alignment explanation
Indices: 21133067--21133117 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21133057 TCGATTCGAT
21133067 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
21133093 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
21133118 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:21134928 original size:26 final size:26
Alignment explanation
Indices: 21134876--21134928 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21134866 GTTGGCTGAG
*
21134876 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
21134902 GCATATGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
21134928 G
1 G
21134929 ATAGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21135106 original size:25 final size:26
Alignment explanation
Indices: 21135072--21135123 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
21135062 GTTGACTTAG
*
21135072 GCATACGGAGTTCA-TCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21135097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21135123 G
1 G
21135124 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21135602 original size:26 final size:26
Alignment explanation
Indices: 21135572--21135624 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21135562 GTTGGCTTAG
*
21135572 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
21135598 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
21135624 G
1 G
21135625 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:21135797 original size:26 final size:26
Alignment explanation
Indices: 21135768--21135820 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21135758 GTTAACTTAG
21135768 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21135794 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21135820 G
1 G
21135821 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21136059 original size:697 final size:690
Alignment explanation
Indices: 21134718--21137101 Score: 2496
Period size: 697 Copynumber: 3.4 Consensus size: 690
21134708 CTCAGCCTAA
** * * * * * * *
21134718 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGAGTTACGACAGCAGGATTGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * * * *
21134783 GCACG-TGGGAGGGATC-GGACCGATCCTCGGCTTGCACGTTCTGCCTCTCCGGCCAGCTG-AGC
66 ACACGCAGGG-GGGACCAGG-TCGATCCT-GACTTGCGCATTCTACCTCTCCGG-CAGCTGAAGC
* * * * *
21134845 GCCAGCACGCTCGTTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTGTAAGCATATGG
127 -CC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGA
* *** * * **
21134910 AGTTCATTCCTAGTCTAAGATAGGATTGGATCGAGGGTTGCGGTAACAGGACCAGCAGTAAAATC
190 AGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGTAACAGGACCAGCAGCAGGATC
* * * * * *** * *
21134975 AACAGCACGCAGGGGGGATCGGACTGATCCCTGGCTTGCGTATTCTAAGTCTCTGGTCGGCTGAG
255 GACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTACGTATTCTGCCTCTCCGGCCGGCTGAG
* ** *
21135040 CGGCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCTAGTCTAAGCATACG
320 C-GCCGTATGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
* *
21135104 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAACAGGATCGACAGCACGCA
384 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGG-TGCG-TAGCAGGATCGATAGCACGCA
* * * *
21135169 GGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGC
447 GGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCTGCACGC
*
21135234 CCGTTCCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CTGAG
512 CCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC-GAG
* * * * * * * * *
21135298 AGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGACCGATCTTCGGCTTGTGCATTAT
576 GGTTGTGGCAACTGGACCGGCAACTCGCAGAGGGGGATCGG-CCGATCCTCGGCTTGCGCATTAT
* * * * *
21135363 GCCTCTTCGGCCACCTCAATGCCCGAACGCTCGTTTCATGGGTTGACTTAG
640 GCCTCTCCAGTCAGCTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
21135414 GCATACGGAGTTCATTCCCAGTCTAGGATTAGACCGCACTGAGGGTTGCGGTAGCAGGATCAATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAACCGAGGGTTGCGGCAGCAGGATCGATA
* * *
21135479 ACACGCAGGGGGGACCAGGTCGATCCCTGACTTCCGCATTCTACCTTTCCGGTCGGCTGAATGCC
66 ACACGCAGGGGGGACCAGGTCGAT-CCTGACTTGCGCATTCTACCTCTCCGG-CAGCTGAA-GCC
* * *
21135544 CGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAAAGT
128 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGT
* * * **
21135609 TCATTCCCAGTCTAAGATAGGACCAGAGCGAGGGTTGCGGT-ACAGAACCAGCAGTAGGATCGGT
193 TCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGTAACAGGACCAGCAGCAGGATCGAC
* * * * *
21135673 AGCACGCAGAGGGGGACCGGGCCGATCCCTGGATTATGTATTCTGCCTCTCCGACCAGCTGAGTG
258 AGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTACGTATTCTGCCTCTCCGGCCGGCTGAGCG
* * * * *
21135738 CTCGCATGCTCGTTTTATGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGA
322 C-CGTATGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * *
21135803 GTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGATGCTGTAGTAGGATCGGTAGCACGTAGG
386 GTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGG-TGC-GTAGCAGGATCGATAGCACGCAGG
* * * * *
21135868 GGGGATCGAGTCGATCCCCGGCTTGCACATTCAGCCTCTCCGACTGGCTGAGCACCTGCATGCCC
449 GGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCTGCACGCCC
* * *
21135933 ATTCCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGT
514 GTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGT
* * * * *
21135998 TATGGCAACTGGACCGGCAACTCGCAGAGGGGGATTGAGTCGATCCGCAGCTTGCGCATTATGCC
579 TGTGGCAACTGGACCGGCAACTCGCAGAGGGGGATCG-GCCGATCCTCGGCTTGCGCATTATGCC
* * * *
21136063 TCTCCAGTCAGCTCAGTGCCCGAACACTTGTTTCGTGGGTTGATTTAG
643 TCTCCAGTCAGCTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
21136111 GCATACAGAGTTCATTCCTAATCTAAGATTAGACCAAACCGAGGGTTGTGGCAGTAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAACCGAGGGTTGCGGCAGCAGGATCGATA
* *
21136176 GA-ACGCAAGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCCGGCTAGCTG-AGCA
66 -ACACGCAGGGGGGACCAGGTCGATCCT-GACTTGCGCATTCTACCTCTCCGGC-AGCTGAAG--
* * *
21136239 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
126 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAA
* * * ** * *
21136304 GTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAATAGGACTAGCAGCAGGATCG
191 GTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGTAACAGGACCAGCAGCAGGATCG
* * * * * * * * * *
21136369 ACAACATGTAGGGGGTATCGGGCCGA-ACGTCGGCTTACGCATTCTGCCTCTTCGGCTGGCTGAG
256 ACAGCACGCAGGGGGGACCGGGCCGATCCCT-GGCTTACGTATTCTGCCTCTCCGGCCGGCTGAG
* *
21136433 CGCCTGTACT-CTCATTTTATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATAT
320 CGCC-GTA-TGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * * *
21136497 GGAGTTCATTCCCAGTGTAAGATCGAATCAAACCGAGGGTAGCAGCAGCAGGATCGATAGCACGC
383 GGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGT-GC-GTAGCAGGATCGATAGCACGC
* * * * ** * * * * *
21136562 AAGGGGTATCGAGCCGGTCCTCGGCTTTTGCATTCTGGCTCTCCGGCCGGTTGAGTGCCTGCACG
446 AGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCTGCACG
* * * * * *
21136627 CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCTAGTCGAATCGAG
511 CCCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAG
* * * * *
21136692 GGTTGTGGC-AGTGGGACCAGC-AGTACGTAGAGAGGGGATCGGGCCGATCCTCGGCTTGCGTAT
576 GGTTGTGGCAACT-GGACCGGCAACT-CGCAGAG-GGGGATC-GGCCGATCCTCGGCTTGCGCAT
* * * * *
21136755 TGTGCCTCTCCAGTCGGCTCAATGCCCGAATGCTCATTTTGTGGGTTGACTTAG
637 TATGCCTCTCCAGTCAGCTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
21136809 GCATACAGAGTTCATTCCCTGTCTAAGATTGGATCGGACCGAGGGTTACGACAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAACCGAGGGTTGCGGCAGCAGGATCGATA
* ** * * * * * *
21136874 GCACGTTGGGGGGGACCAGGCCGGTTCTCAGCTTGTGCATTCTACCTCTCCGGCCGCTG-AGCAC
66 ACACG-CAGGGGGGACCAGGTCGATCCTGA-CTTGCGCATTCTACCTCTCCGGCAGCTGAAGC-C
* * * *
21136938 CTGCACGCTCGTTTCTTAGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCAAATGAA
128 C-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCATACGAA
* * * *
21137002 GTTCATTCCCAGTCTAAGATCA-GACTAGACCAAGGGTTGTGGTAACAGGACCAGTAGCAGGATC
191 GTTCATTCCCAGTCTAAGAT-AGGACCAGACCGAGGGTTGCGGTAACAGGACCAGCAGCAGGATC
* * *
21137066 GACAGCACGTAAGGGGGACCGGG-TGAATCCCTGGCT
255 GACAGCACGCAGGGGGGACCGGGCCG-ATCCCTGGCT
21137102 GAGCCCCCAC
Statistics
Matches: 1385, Mismatches: 269, Indels: 66
0.81 0.16 0.04
Matches are distributed among these distances:
695 29 0.02
696 269 0.19
697 757 0.55
698 290 0.21
699 40 0.03
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (690 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAACCGAGGGTTGCGGCAGCAGGATCGATA
ACACGCAGGGGGGACCAGGTCGATCCTGACTTGCGCATTCTACCTCTCCGGCAGCTGAAGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCA
TTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGTAACAGGACCAGCAGCAGGATCGACAGC
ACGCAGGGGGGACCGGGCCGATCCCTGGCTTACGTATTCTGCCTCTCCGGCCGGCTGAGCGCCGT
ATGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGATCAGACCGAGGGTGCGTAGCAGGATCGATAGCACGCAGGGGGGATC
GAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCTGCACGCCCGTTCCGT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCA
ACTGGACCGGCAACTCGCAGAGGGGGATCGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCAGT
CAGCTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
Found at i:21136319 original size:26 final size:26
Alignment explanation
Indices: 21136269--21136321 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21136259 GTTGGCTTAG
*
21136269 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
21136295 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
21136321 G
1 G
21136322 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:21136501 original size:26 final size:26
Alignment explanation
Indices: 21136465--21136517 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21136455 GTTGACTTAG
21136465 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
21136491 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
21136517 G
1 G
21136518 ATCGAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:21137749 original size:26 final size:26
Alignment explanation
Indices: 21137712--21137764 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21137702 GTTGACTTAG
21137712 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
* *
21137738 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
21137764 G
1 G
21137765 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:21138091 original size:26 final size:26
Alignment explanation
Indices: 21138055--21138107 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21138045 GTTGGCTTAG
**
21138055 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21138081 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21138107 G
1 G
21138108 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21138202 original size:11 final size:11
Alignment explanation
Indices: 21138188--21138219 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
21138178 ATCACCGAAA
21138188 CATCGTCGGAG
1 CATCGTCGGAG
21138199 CATCGTCGGAG
1 CATCGTCGGAG
*
21138210 CATTGTCGGA
1 CATCGTCGGA
21138220 CATACTAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.25, G:0.34, T:0.22
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:21138830 original size:26 final size:26
Alignment explanation
Indices: 21138801--21138859 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
21138791 GTTGACTTAG
21138801 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21138827 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21138853 GCATACG
1 GCATACG
21138860 TAGGGGGGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21139458 original size:196 final size:192
Alignment explanation
Indices: 21139141--21139849 Score: 624
Period size: 196 Copynumber: 3.7 Consensus size: 192
21139131 GGATCGAGCC
* ** * * * * *
21139141 GATCCCTGACTTGTGCATTCTGCCTTTTCGATCAACTGAGT-ACCCGCACGCTCGTTTTATGGGT
1 GATCCCCGACTTACGCATTCTGCC-TTTCGATCGACT-AATCACCCGCAAGCTCGATTCATGGGT
* * * * *
21139205 TGGCTTACGCATACGGAGTTCATTCCATGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
64 TGACTTAGGCATACGGAGTTCATCCCAT-CCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
21139270 GACCCGACCAAGGGTTGTGATAGCAGGACTAGTAGCAGGATCGGTAGCATGCAGGGGAGACCAGG
128 GACCCGACCAAGGGTTGTGATAGCAGGAC-AGTAGCAGGATCGGTAGCATGCAGGGG-GACCAGG
21139335 CT
191 CT
*
21139337 GATCCCCGACTTACGTATTCTGCCTTTCCGATCGACTAATCACCCGCAAGCTCGATTCATGGGTT
1 GATCCCCGACTTACGCATTCTGCCTTT-CGATCGACTAATCACCCGCAAGCTCGATTCATGGGTT
* *
21139402 GACTTAGGCATATGGAGTTCATCCCCAAT-TTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
65 GACTTAGGCATACGGAGTTCAT-CCC-ATCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *** * * * *
21139466 GACCGGATCGA-GG--GT--T-GC-GG-C---AGCCGGATCAACAGCACGCAAGGGGGATCGGGT
128 GACCCGACCAAGGGTTGTGATAGCAGGACAGTAGCAGGATCGGTAGCATGC-AGGGGGACCAGGC
21139520 T
192 T
* * ** * * * * * * * * * *
21139521 GATCCCTGGCTTGTGCATTCTACCCTTTCGACCGGCTGAGCGCCCGTATG-TCCGTTTCGTGGGT
1 GATCCCCGACTTACGCATTCT-GCCTTTCGATCGACTAATCACCCGCAAGCT-CGATTCATGGGT
* * *
21139585 TGGCTTAGGCATACGGATTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
64 TGACTTAGGCATACGGAGTTCATCCCAT-CCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* *
21139650 GA-CTGAACCAAGGGTTGCGATAGCAGGACCAGTAGCAGGATCGGTAGCATGCAGGAGGGACCAG
128 GACCCG-ACCAAGGGTTGTGATAGCAGGA-CAGTAGCAGGATCGGTAGCATGCAGG-GGGACCAG
*
21139714 GCC
190 GCT
* * * * * * *
21139717 GATCCCCGACTTACGCATTCTGCCACTTAG-GCAGGCTGATCGCCCGTAAGCTCGATTCATGGGT
1 GATCCCCGACTTACGCATTCTGCC-TTTCGATC-GACTAATCACCCGCAAGCTCGATTCATGGGT
*
21139781 TGACTTAGGCATACGAAGTTCATCCCCAGT-CTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
64 TGACTTAGGCATACGGAGTTCAT-CCCA-TCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
*
21139845 GGACC
127 AGACC
21139850 AAACCAAAGG
Statistics
Matches: 407, Mismatches: 77, Indels: 57
0.75 0.14 0.11
Matches are distributed among these distances:
182 2 0.00
183 5 0.01
184 120 0.29
185 12 0.03
187 1 0.00
188 1 0.00
189 3 0.01
190 4 0.01
191 3 0.01
193 3 0.01
195 13 0.03
196 230 0.57
197 7 0.02
198 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.25
Consensus pattern (192 bp):
GATCCCCGACTTACGCATTCTGCCTTTCGATCGACTAATCACCCGCAAGCTCGATTCATGGGTTG
ACTTAGGCATACGGAGTTCATCCCATCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CCGACCAAGGGTTGTGATAGCAGGACAGTAGCAGGATCGGTAGCATGCAGGGGGACCAGGCT
Found at i:21139461 original size:26 final size:26
Alignment explanation
Indices: 21139409--21139461 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21139399 GTTGACTTAG
* *
21139409 GCATATGGAGTTCATCCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
21139435 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21139461 G
1 G
21139462 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21139819 original size:26 final size:26
Alignment explanation
Indices: 21139789--21139841 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21139779 GTTGACTTAG
21139789 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21139815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21139841 G
1 G
21139842 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21139906 original size:380 final size:375
Alignment explanation
Indices: 21139055--21139998 Score: 1147
Period size: 380 Copynumber: 2.5 Consensus size: 375
21139045 GTTGACTTAG
* * * * *
21139055 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGATAACAGGTTCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
* * * * ** *
21139120 GCACGCAGGGGGGATCGAGCCGATCCCTGACTTGTGCATTCTGCCTTTTCGATCAACTGAGTACC
66 GCA--CAAGGGGGATCGGGCTGATCCCTGACTTGTGCATTCT-CCCTTTCGATCGGCTGAGCACC
* * *
21139185 CGCACGCTCGTTTTATGGGTTGGCTTACGCATACGGAGTTCATTCCATGCCTAAGCATACAGAGT
128 CGCATGC-CGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACAGAGT
* * *
21139250 TCATTCCCAGTCTAAGATCGGACCCGACCAAGGGTTGTGATAGCAGGACTAGTAGCAGGATCGGT
192 TCATTCCCAGTCTAAGATCAGACCCGACCAAGGGTTGCGATAGCAGGACCAGTAGCAGGATCGGT
* * * *
21139315 AGCATGCAGGGGAGACCAGGCTGATCCCCGACTTACGTATTCTGCCTTTCCGATCGACTAATCAC
257 AGCATGCAGGGGAGACCAGGCCGATCCCCGACTTACGCATTCTGCCCTTACGA-CGACTAATCAC
* * *
21139380 CCGCAAGCTCGATTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAATTTAA
321 CCGCAAGCTCGATTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAA
* * * * *
21139435 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCCGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
* * * *
21139500 GCACGCAAGGGGGATCGGGTTGATCCCTGGCTTGTGCATTCTACCCTTTCGACCGGCTGAGCGCC
66 GCA--CAAGGGGGATCGGGCTGATCCCTGACTTGTGCATTCT-CCCTTTCGATCGGCTGAGCACC
* * * *
21139565 CGTATGTCCGTTTCGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGCCTAAGCATACGGAGT
128 CGCATG-CCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACAGAGT
*
21139630 TCATTCCCAGTCTAAGATCAGA-CTGAACCAAGGGTTGCGATAGCAGGACCAGTAGCAGGATCGG
192 TCATTCCCAGTCTAAGATCAGACCCG-ACCAAGGGTTGCGATAGCAGGACCAGTAGCAGGATCGG
* * *
21139694 TAGCATGCAGGAGG-GACCAGGCCGATCCCCGACTTACGCATTCTGCCACTTA-GGCAGGCTGAT
256 TAGCATGCAGG-GGAGACCAGGCCGATCCCCGACTTACGCATTCTGCC-CTTACGAC-GACTAAT
* * *
21139757 CGCCCGTAAGCTCGATTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAA
318 CACCCGCAAGCTCGATTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAA
* * * * * **
21139815 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAAGGTTGCGACAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
* * **** * * *
21139880 GCACATAGAGGGGACCGGGCTGATCCCCGACTTACATATTCTGCCTCTCCGATCGGTTGAGCACC
66 GCACA-AG-GGGGATCGGGCTGATCCCTGACTTGTGCATTCTCCCT-TTCGATCGGCTGAGCACC
* *
21139945 CGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
128 CGCATG-CCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAA
21139999 CCCCAGTCGG
Statistics
Matches: 479, Mismatches: 77, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
378 2 0.00
379 8 0.02
380 464 0.97
381 5 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (375 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
GCACAAGGGGGATCGGGCTGATCCCTGACTTGTGCATTCTCCCTTTCGATCGGCTGAGCACCCGC
ATGCCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACAGAGTTCAT
TCCCAGTCTAAGATCAGACCCGACCAAGGGTTGCGATAGCAGGACCAGTAGCAGGATCGGTAGCA
TGCAGGGGAGACCAGGCCGATCCCCGACTTACGCATTCTGCCCTTACGACGACTAATCACCCGCA
AGCTCGATTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAA
Found at i:21140208 original size:158 final size:157
Alignment explanation
Indices: 21139815--21140314 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 157
21139805 CCCAGTCTAA
* ** * * **
21139815 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAAACCAAAGGTTGCGACAGTAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCAAAGGTTGAG-CAGCAGGATCGAC
** * * ** *
21139879 AGCACATAGAGGGGACCGGGCTGATCCCCGACTTACATATTCTGCCTCTCCGATCGGTTGAGCAC
64 AGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCAC
** * *
21139944 CCGCATGCCCGTTTTGTGGGTTGGCTTAG
129 CCAAATGCTCGTTTCGTGGGTTGGCTTAG
* *** * * * * * * *
21139973 GCATAGGGAGTTCATTCCATGTCTAACCCCAG-TCGGACCGAGGGTTGTGGCATCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCAAAGGTTG-AGCAGCAGGATCGACA
* * * * *
21140037 GCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCAC
65 GCACGCAG-GGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCAC
* *
21140102 CCAAATGCTCGTTTCATGGGTTGACTTAG
129 CCAAATGCTCGTTTCGTGGGTTGGCTTAG
* *
21140131 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGATCAAAGGTTGAAGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCAAAGGTTG-AGCAGCAGGATCGAC
* *** * * **
21140195 AACACGCAGGGGGGACTATG-TCGATCCCTGGCTTACGCATTCTTCCTCTCCGATCGGCTGAGTG
64 AGCACGCAGGGGGGACCGGGCT-GATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCA
* *
21140259 CCCATATGCTCGTTTCGTGGGTTGGTTTAG
128 CCCAAATGCTCGTTTCGTGGGTTGGCTTAG
21140289 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21140315 TCATACGGAG
Statistics
Matches: 269, Mismatches: 66, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 31 0.12
158 204 0.76
159 34 0.13
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCAAAGGTTGAGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCC
AAATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21140319 original size:26 final size:26
Alignment explanation
Indices: 21140290--21140340 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21140280 TTGGTTTAGG
21140290 CATACGGAGTTCATT-CCATGTCTAAT
1 CATACGGAGTTCATTCCCA-GTCTAAT
21140316 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
21140341 GATCGGACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:21140534 original size:26 final size:26
Alignment explanation
Indices: 21140498--21140550 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21140488 GTTGACTTAG
21140498 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
21140524 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21140550 G
1 G
21140551 ATAAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21140808 original size:709 final size:694
Alignment explanation
Indices: 21139435--21141407 Score: 2298
Period size: 709 Copynumber: 2.8 Consensus size: 694
21139425 CCCAATTTAA
* * * * * *
21139435 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCCGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAAGGTTG-AGCAGCAGGATCGACA
* ** * * *
21139500 GCACGCAAGGGGGATCGGGTTGATCCCTGGCTTGTGCATTCTACC-CTTTCGACCGGCTGAGCGC
65 GCACGCAGGGGGGA-CTAGTCGATCCCTGGCTT-CGCATTCTTCCTC-TTCGACCGGCTGAGCGC
* *
21139564 CCGTATGTCCGTTTCGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGCCTAAGCATACGGAG
127 CCGTATGT-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
* * *
21139629 TTCATTCCCAGTCTAAGATCAGACTGAACCAAGGGTTGCGATAGCAGGACCAGTAGCAGGATCGG
191 TTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGATAGCAGGACCAGCAGCAGGATCGG
* * * * *
21139694 TAGCATGCAGGAGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCACT-TAGG-CAGGCTGAT
256 TAGCATGCAGG-GGGACCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCGAGGTCAGGCTGAG
* *
21139757 CGCCCGTAAGCTCGATTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACG
320 CGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
** * * * *
21139822 GAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAAGGTTGCGACAGTAGGATCGGTAGCACATA
385 GAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAAGGTTGCGACAGTAGGATTGGCAGCACGTA
* * * ** *
21139887 GAGGGGACCGGGCTGATCCCCGACTTACATATTCTGCCTCTCCGATCGGTTGAGCACCCGCATGC
450 GGGGGGACCGGGCTGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCGGTTGAGCACCCGCACGC
* * * *
21139952 CCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-CCCCAGTCGGACCGAGG
515 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
* * * * ** *
21140016 GTTGTGGCATCGGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATG
580 GTTGTGGCATCGGGACAGACAGCACACAGAGGAGGACCCGGCCAATCCCCGGCTTGAGCATTATG
* *
21140081 CCTCTCCGACCAGCTCAGCACCCAAATGCTCGTTTCATGGGTTGACTTAG
645 CCTCTCCGACCAGCTCAGCACCCAAATGCTCATTTCACGGGTTGACTTAG
* *
21140131 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCAAAGGTTGAAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAAGGTTG-AGCAGCAGGATCGACA
* * * *
21140196 ACACGCAGGGGGGACTATGTCGATCCCTGGCTTACGCATTCTTCCTCTCCGATCGGCTGAGTGCC
65 GCACGCAGGGGGGACTA-GTCGATCCCTGGCTT-CGCATTCTTCCTCTTCGACCGGCTGAGCGCC
* * *
21140261 CATATGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAATCATACGGAGT
128 CGTATG-TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
* * * **
21140326 TCATTCCCAGTCTAAGATCGGACTGGATCAAGGGTTGCAACAGCAGGACCAGCAGCAGGATCGAC
192 TCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGATAGCAGGACCAGCAGCAGGATCGGT
* * * * * *
21140391 AACATGTAAGGGGGATCGGGTCGATCCCTGGCTTACGCATTTTGCCTCTCCGACCGGCCTCTCCA
257 AGCATG-CAGGGGGACCGGGCCGATCCCTGACTTACGCATTCTGCCTCT-CGA--GG----T-CA
* * ** * *
21140456 GCCAGCTGAGCACCCGCACCCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
313 G---GCTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * ** * * * *
21140521 TAAGCATATGGAGTTCATTCCTAGTCTAAGATAAGATCGGATCAAAGGTTGTGGCAGCAGGATTG
375 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAAGGTTGCGACAGTAGGATTG
* * * * *
21140586 GCAGCATGTAGGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTACCTCTCCGGCCGGTTGAGC
440 GCAGCACGTAGGGGGGACCGGGCTGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCGGTTGAGC
* * *
21140651 GCCCGTACGCCCATTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
505 ACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
*
21140716 CAGACCGAGGGTTGTGGCA-CGGGACTAG-CAGCACACAGAGGAGGACCCGGCCAATCCTCGGCT
570 CAGACCGAGGGTTGTGGCATCGGGAC-AGACAGCACACAGAGGAGGACCCGGCCAATCCCCGGCT
* * * * **
21140779 TGAGCATTATGCCTCTCTGGCCGGCTCAGCGCCTGAATGCTCATTTCACGGGTTGACTTAG
634 TGAGCATTATGCCTCTCCGACCAGCTCAGCACCCAAATGCTCATTTCACGGGTTGACTTAG
* * * * *
21140840 GCATACGGAGTTTATTCTCAGTCTAAGATCGGACCGGA-CAAAACGTTGTGACAGCAGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-AAAGGTTGAG-CAGCAGGATCGAC
* * * * * *
21140904 AGCACCCAGGGGGGACCGAG-CTGAT-CCTCAGCTTGGACATT-TTGCCTTTTCGACCGACTGAG
64 AGCACGCAGGGGGGA-CTAGTC-GATCCCT-GGCTTCG-CATTCTT-CCTCTTCGACCGGCTGAG
* * * * *
21140966 CGCCCGCACGTTCATTTCGTGGGTTGGCTTAGCCATACAGAGTTCATTCCATGTCTAAGCATACG
124 CGCCCGTATG-TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* * ** * * *
21141031 GAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTATGGTAGAAGGACCAGCATCAGGAT
188 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGATAGCAGGACCAGCAGCAGGAT
* * *
21141096 CGGTAGCACGCAGGGAGGACCGGGCCGATCCCTAACTTACGCATTCTGTCTCTCTGA--TC-GGC
253 CGGTAGCATGCAGGG-GGACCGGGCCGATCCCTGACTTACGCATTCTGCCTCTC-GAGGTCAGGC
* *
21141158 TGAGCGTCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCA
316 TGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * * * *
21141223 TACAGAGTTAATTCCCAGTCTGAGATCGGACCGGATCGAGGGTTGCGACAGTAGGATTGGCAGTA
381 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAAGGTTGCGACAGTAGGATTGGCAGCA
* * * * * *
21141288 CGTAGGGTGGACTGGGCTGATCCTCGGCTTGCGTATTCTGCCTTTCCGGCCAGTTGAGCACCCGC
446 CGTAGGGGGGACCGGGCTGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCGGTTGAGCACCCGC
* *
21141353 ACGCCCATTTCATGGGTTGGCTTAGGCAAAGGGAGTTCATTCCATGTCTAAGCCC
511 ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
21141408 TAATCGGACT
Statistics
Matches: 1064, Mismatches: 185, Indels: 56
0.82 0.14 0.04
Matches are distributed among these distances:
695 1 0.00
696 471 0.44
697 5 0.00
698 1 0.00
699 1 0.00
700 3 0.00
701 1 0.00
706 3 0.00
708 14 0.01
709 537 0.50
710 27 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (694 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAAGGTTGAGCAGCAGGATCGACAG
CACGCAGGGGGGACTAGTCGATCCCTGGCTTCGCATTCTTCCTCTTCGACCGGCTGAGCGCCCGT
ATGTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGATAGCAGGACCAGCAGCAGGATCGGTAGCA
TGCAGGGGGACCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCGAGGTCAGGCTGAGCGCCCG
TAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCGGATCAAAGGTTGCGACAGTAGGATTGGCAGCACGTAGGGGGG
ACCGGGCTGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCGGTTGAGCACCCGCACGCCCATTT
CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTG
GCATCGGGACAGACAGCACACAGAGGAGGACCCGGCCAATCCCCGGCTTGAGCATTATGCCTCTC
CGACCAGCTCAGCACCCAAATGCTCATTTCACGGGTTGACTTAG
Found at i:21141048 original size:26 final size:26
Alignment explanation
Indices: 21140999--21141050 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21140989 TTGGCTTAGC
*
21140999 CATACAGAGTTCATTCCATGTCTAAG
1 CATACAGAGTTCATTCCATATCTAAG
*
21141025 CATACGGAGTTCATTCCCA-ATCTAAG
1 CATACAGAGTTCATT-CCATATCTAAG
21141051 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATATCTAAG
Found at i:21141580 original size:26 final size:26
Alignment explanation
Indices: 21141550--21141602 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21141540 GTGGACTTAG
*
21141550 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
21141576 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
21141602 G
1 G
21141603 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:21142106 original size:26 final size:26
Alignment explanation
Indices: 21142072--21142121 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
21142062 GACTTAAGGG
*
21142072 TACGGAGTTCA-TCCCTAGTCTAAGCA
1 TACGAAGTTCATTCCC-AGTCTAAGCA
21142098 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
21142122 ATTGAATTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:21142579 original size:26 final size:26
Alignment explanation
Indices: 21142549--21142599 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21142539 TGGTTTAGGC
21142549 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
21142575 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
21142600 ATCGAACCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:21142944 original size:26 final size:26
Alignment explanation
Indices: 21142914--21142966 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21142904 GCTGACTTAG
*
21142914 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACAGAGTTCACT-CCCAGTCTAA
*
21142940 GCATACAGAGTTCACTCCTAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
21142966 G
1 G
21142967 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:21143465 original size:26 final size:26
Alignment explanation
Indices: 21143416--21143468 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21143406 GTTGGTTTAG
*
21143416 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21143442 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
21143468 G
1 G
21143469 ATCGGGCCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21143662 original size:26 final size:26
Alignment explanation
Indices: 21143624--21143676 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21143614 GTTGACTTAG
* *
21143624 GCATACGGGGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
21143650 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21143676 G
1 G
21143677 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21143860 original size:26 final size:26
Alignment explanation
Indices: 21143806--21143861 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
21143796 TGGGTTGGCA
**
21143806 TAAGCATACGGAGTTCATTCCGTGCC
1 TAAGCATACGGAGTTCATTCCCAGCC
* *
21143832 TAAGCATACGGATTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGCC
21143858 TAAG
1 TAAG
21143862 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGCC
Found at i:21144052 original size:26 final size:26
Alignment explanation
Indices: 21144008--21144058 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21143998 TAACTTAGTC
21144008 ATACGGAGTGCATCACCAGTCTAAGT
1 ATACGGAGTGCATCACCAGTCTAAGT
*
21144034 ATACGGAGTTCATTC-CCAGTCTAAG
1 ATACGGAGTGCA-TCACCAGTCTAAG
21144059 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (26 bp):
ATACGGAGTGCATCACCAGTCTAAGT
Found at i:21144334 original size:159 final size:159
Alignment explanation
Indices: 21144087--21144855 Score: 692
Period size: 159 Copynumber: 4.9 Consensus size: 159
21144077 TTGCGGTAAC
* * * * * *
21144087 AGGATCGATAGCACGCAGA-GAGGATCG-GGCAGATCTCTGACTTGTGCATTCTGCCTCTCCAGC
1 AGGATCGACAGCACGCAGAGGGGGATCGAGTC-GATCCCTGGCTTGTACATTCTGCCTCTCCAGC
* * * *
21144150 CGGTTGAGTGCCCGTACGGCTGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
65 CGGCTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * *
21144215 AGCTCCAGTCAGACTGAGGGATGTGGTAGT
130 AGCCCCAGTCAGACTGAGGGTTGTGGCAGT
* * ** * * *
21144245 AGGACCAACAGCATACAGAGGGGGATCGAATCGAT-CCTCGGCTTGCACATTCTGCTTCTCCAGC
1 AGGATCGACAGCACGCAGAGGGGGATCGAGTCGATCCCT-GGCTTGTACATTCTGCCTCTCCAGC
* * * *
21144309 CCGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
65 CGGCTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
21144374 AGCCCCAGTCGGA-TAGAGGGTTGTGGCAGG
130 AGCCCCAGTCAGACT-GAGGGTTGTGGCAGT
* * * * * * * *
21144404 GGGATCGACAGCACGCAGAGGGGGATCGGGTCGTTTCCTGGCTTGTGCATTATGCCTCTCCGGTC
1 AGGATCGACAGCACGCAGAGGGGGATCGAGTCGATCCCTGGCTTGTACATTCTGCCTCTCCAGCC
* * * * * * *
21144469 GGCTCAGCGCCCGAACACTCGTTTCATGGGTTGTCTTAGGCATACGGAGTTCATTCCCA-GTCTA
66 GGCTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
** * * * * *
21144533 AG-ATCAGACCGAACCGTGGGTTATGGCAGT
130 AGCCCCAGTCAG-ACTGAGGGTTGTGGCAGT
* * * * * * * * * *
21144563 AAGAACGACAACACGTA-AGGGGGATCGGGTTGGTCCCTGGCTTG-AGCATTCTACCTCTCCGGT
1 AGGATCGACAGCACGCAGAGGGGGATCGAGTCGATCCCTGGCTTGTA-CATTCTGCCTCTCCAGC
*** * * *
21144626 CGGCTGAACACCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTA
65 CGGCTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
21144691 AGCCCCAGTCGGACTGAGGGTTATGGCAGT
130 AGCCCCAGTCAGACTGAGGGTTGTGGCAGT
** * * * * * * *
21144721 AGGATCGGTAGCACGTAGAGGGGGACCGAGCCTATCCCTGGCTTGTGCATTCTACCTCTCCAGCT
1 AGGATCGACAGCACGCAGAGGGGGATCGAGTCGATCCCTGGCTTGTACATTCTGCCTCTCCAGCC
* * * * **
21144786 GGTTGAGTGCCCGGACACCCATTTCGTGGGTTGGCTTAGGCATGGGGAGTTCATTCCATGTC-AA
66 GGCTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
21144850 GCCCCA
131 GCCCCA
21144856 ACCAGACCAA
Statistics
Matches: 491, Mismatches: 107, Indels: 26
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 152 0.31
159 329 0.67
160 7 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (159 bp):
AGGATCGACAGCACGCAGAGGGGGATCGAGTCGATCCCTGGCTTGTACATTCTGCCTCTCCAGCC
GGCTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGTCAGACTGAGGGTTGTGGCAGT
Found at i:21144665 original size:158 final size:159
Alignment explanation
Indices: 21144329--21144719 Score: 432
Period size: 158 Copynumber: 2.5 Consensus size: 159
21144319 CCCGCACGCC
* * * *
21144329 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGATAGAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCACCAGACCGATAGAGG
* ** * * * * * *
21144393 GTTGTGGCAGGGGGATCGACAGCACGCAGAGGGGGATCGGGTCGTTTCCTGGCTTGTGCATTATG
65 GTTATGGCAGGAAGAACGACAACACGCAGAGGGGGATCGGGTCGGTCCCTGGCTTGAGCATTATA
* *
21144458 CCTCTCCGGTCGGCTCAGCGCCCGAACACT
130 CCTCTCCGGTCGGCTCAACACCCGAACACT
* * *
21144488 CGTTTCATGGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGA-ACCGTG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGACCGATA--GAG
* * * *
21144551 GGTTATGGCAGTAAGAACGACAACACGTA-AGGGGGATCGGGTTGGTCCCTGGCTTGAGCATTCT
64 GGTTATGGCAGGAAGAACGACAACACGCAGAGGGGGATCGGGTCGGTCCCTGGCTTGAGCATTAT
* * **
21144615 ACCTCTCCGGTCGGCTGAACACCCGTATGCT
129 ACCTCTCCGGTCGGCTCAACACCCGAACACT
* * * * *
21144646 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGTCGGACT-GAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGACCGA-TAGAGG
21144710 GTTATGGCAG
65 GTTATGGCAG
21144720 TAGGATCGGT
Statistics
Matches: 192, Mismatches: 34, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
157 1 0.01
158 117 0.61
159 71 0.37
160 3 0.02
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.25
Consensus pattern (159 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGACCGATAGAGGG
TTATGGCAGGAAGAACGACAACACGCAGAGGGGGATCGGGTCGGTCCCTGGCTTGAGCATTATAC
CTCTCCGGTCGGCTCAACACCCGAACACT
Found at i:21145147 original size:26 final size:26
Alignment explanation
Indices: 21145117--21145169 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21145107 GTTGACTTAG
21145117 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21145143 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21145169 G
1 G
21145170 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21145359 original size:477 final size:477
Alignment explanation
Indices: 21144666--21145806 Score: 1341
Period size: 477 Copynumber: 2.4 Consensus size: 477
21144656 GTTGGCTTAG
* ** * * ** ** * * *
21144666 GCATACGGAGTTCATTCCAAGTCTAAGCCCCAGTCGGACTGAGGGTTATGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGATAGCAAGATCGATA
* * * * * **
21144731 GCACGTAGAGGGGGACCGAGCCTATCCCTGGCTTGTGCATTCTACCTCTCCAGC-TGGTTGAGTG
66 GCACGTAG-GGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACCTATCC-GCATCGCTGAGCA
* * *
21144795 CCCGGACACCCATTTCGTGGGTTGGCTTAGGCATGGGGAGTTCATTCCATGTC-AAGCCCCAACC
129 CCCGGACTCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
* * * *
21144859 AGACCAAGGGCTGTGGTAGTGAGATCGGTAGCACGTAG-AAGAGGACTGGGCCGATCGTCGGCTT
194 AGACCAAGGGCTGTGGCAGTGAGACCGGTAGCACGCAGAAAG-GGACTGGGCCGATCCTCGGCTT
** * * * * * *
21144923 GTGCATTATGCCTTTCCGACCAGCTCAGCGCCCAAATGCTTGTTTCATGGGA-TGACTTAAGCAT
258 ACGCATTATGCCTCTCCGACCAGCTCAACACCCAAACGCTCGTTTCAT-GCATTGACTTAAGCAT
* *
21144987 AC-AGAGTTCATTCCCAGTCTAAGTAGTAGGATCGACAA-CACACAGGGGGGACCGAGCTGATCC
322 ACGA-AGTTCATTCCCAATCTAAGCAGTAGGATCGA-AAGCACACAGGGGGGACCGAGCTGATCC
* ** *
21145050 TCGACTTGCACATTCTACCTCTCCGATCGGA-TGAGTGCCCGCACGCTTGTTTCATTAGTTGACT
385 TCGACTTACACATTCTACCTCTCCGATC-GATTGAGCACCCGCACGCTTGTTTCATGAGTTGACT
21145114 TAGGCATACAGAGTTCATCCCCA-GTCTAA
449 TAGGCATACAGAGTTCAT-CCCATGTCTAA
*
21145143 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGATAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGATAGCAAGATCGATA
* *
21145208 GCACGTAGGAGGGACCGAGCCGATCCCCGGTTTGTGCATTCTACCTATCCGGCAT-GCTGAGCAC
66 GCACGTAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACCTATCC-GCATCGCTGAGCAC
* * *
21145272 CCGGACTCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
130 CCGGACTCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCA
* * *
21145337 GACCAATGGTTGTGGCAGTGAGACCGGTAGCACGCAGAAAGGGACTGGGTCGATCCTCGGCTTAC
195 GACCAAGGGCTGTGGCAGTGAGACCGGTAGCACGCAGAAAGGGACTGGGCCGATCCTCGGCTTAC
* * * * *
21145402 GCATTATGCCTCTCTGATCGGCTCAACACTCAAACGCTCGTTTCATGCATTGACTTAGGCATACG
260 GCATTATGCCTCTCCGACCAGCTCAACACCCAAACGCTCGTTTCATGCATTGACTTAAGCATACG
* * * *
21145467 AAGTTCATTCCCAATCTAAGCAGTAGGATCGAAAGCACGCAGGGGGGACTGGGCTGATCCTCGGC
325 AAGTTCATTCCCAATCTAAGCAGTAGGATCGAAAGCACACAGGGGGGACCGAGCTGATCCTCGAC
* * * * *
21145532 TTACGCATTTTGCCTCTCCGATCGATTGAGCACCTGCACGCTTGTTTCATGGGTTGACTTAGGCA
390 TTACACATTCTACCTCTCCGATCGATTGAGCACCCGCACGCTTGTTTCATGAGTTGACTTAGGCA
* *
21145597 TACGGAGTTCATTCCATGTCTAA
455 TACAGAGTTCATCCCATGTCTAA
* * * * *
21145620 GCATACGGGGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGAGTTGCGATAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGATAGCAAGATCGATA
* * * * * ** *
21145685 GCACGTAGGGGGAGATCGAGTCGGTCCTCGACTTACGCATTCTACCTTTCCG-ATCGACTGAGCA
66 GCACGTAGGGGG-GACCGAGCCGATCCCCGGCTTGTGCATTCTACCTATCCGCATCG-CTGAGCA
* * * * * *
21145749 CCCGCA-TGCTCATTTCGTGGGGTAGCTTAGGCATACGGAGTTCATTCAATGTCTAAGC
129 CCCGGACTCCT-ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
21145807 ATATGGAGTT
Statistics
Matches: 563, Mismatches: 89, Indels: 23
0.83 0.13 0.03
Matches are distributed among these distances:
476 103 0.18
477 374 0.66
478 86 0.15
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (477 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGATAGCAAGATCGATA
GCACGTAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACCTATCCGCATCGCTGAGCACC
CGGACTCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAG
ACCAAGGGCTGTGGCAGTGAGACCGGTAGCACGCAGAAAGGGACTGGGCCGATCCTCGGCTTACG
CATTATGCCTCTCCGACCAGCTCAACACCCAAACGCTCGTTTCATGCATTGACTTAAGCATACGA
AGTTCATTCCCAATCTAAGCAGTAGGATCGAAAGCACACAGGGGGGACCGAGCTGATCCTCGACT
TACACATTCTACCTCTCCGATCGATTGAGCACCCGCACGCTTGTTTCATGAGTTGACTTAGGCAT
ACAGAGTTCATCCCATGTCTAA
Found at i:21145624 original size:26 final size:26
Alignment explanation
Indices: 21145594--21145646 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21145584 GTTGACTTAG
21145594 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21145620 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21145646 G
1 G
21145647 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21146017 original size:26 final size:26
Alignment explanation
Indices: 21145987--21146039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21145977 GTTGACTTAG
*
21145987 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATAAGAAGTTCATCCCTAGTCTAA
* *
21146013 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGAAGTTCATCCCTAGTCTAA
21146039 G
1 G
21146040 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCTAGTCTAA
Found at i:21146381 original size:26 final size:26
Alignment explanation
Indices: 21146352--21146404 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21146342 GAGTTGACTA
21146352 AGGCATACTG-AGTTCATCCCTACTCT
1 AGGCATAC-GAAGTTCATCCCTACTCT
* *
21146378 AGGCATACGAAGTTCATTCCTAGTCT
1 AGGCATACGAAGTTCATCCCTACTCT
21146404 A
1 A
21146405 AGATCAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
AGGCATACGAAGTTCATCCCTACTCT
Found at i:21147777 original size:159 final size:158
Alignment explanation
Indices: 21147494--21147791 Score: 348
Period size: 159 Copynumber: 1.9 Consensus size: 158
21147484 ATTAGACCGA
* *
21147494 ATCGAGGGTTACGACAGCAGGATCGAAAGCACGTAAGGGGGACCGGGCCGATCTCCGACTTGCAC
1 ATCGAGGGTTACGACAGCAGGATCGAAAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCAC
* * * * * ** * **
21147559 ATTTTGCTTCTCCAGCTGACTGAGCACCCGCACGCCCGTTTTGTAGGTTGGCTTAGGCATAGGGA
66 ATTATGCCTCTCCAGCTGACTCAACACCCGAACGCCCGTTTCATAGGTTGACTTAGGCATACAGA
21147624 GTTCATTCCATGTCTAAGCCCCAGCTGG
131 GTTCATTCCATGTCTAAGCCCCAGCTGG
** * * * * *
21147652 ATCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCCTATCCCCGACTTGCG
1 ATCGAGGGTTACGACAGCAGGATCGAAAGCACGCA-AGGGGGACCGGGCCGATCCCCGACTTGCA
* * * *
21147717 CATTATGCCTCTCCAG-TCGACTCAACGCTCGAACGCTC-TTGTCATGGGTTGACTTAGGCATAC
65 CATTATGCCTCTCCAGCT-GACTCAACACCCGAACGCCCGTT-TCATAGGTTGACTTAGGCATAC
21147780 AGAGTTCATTCC
128 AGAGTTCATTCC
21147792 CAATCTAAGA
Statistics
Matches: 114, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
158 32 0.28
159 82 0.72
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
ATCGAGGGTTACGACAGCAGGATCGAAAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCAC
ATTATGCCTCTCCAGCTGACTCAACACCCGAACGCCCGTTTCATAGGTTGACTTAGGCATACAGA
GTTCATTCCATGTCTAAGCCCCAGCTGG
Found at i:21148169 original size:26 final size:26
Alignment explanation
Indices: 21148132--21148184 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21148122 GTTGACTTAG
21148132 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
21148158 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
21148184 G
1 G
21148185 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:21148237 original size:198 final size:199
Alignment explanation
Indices: 21147891--21148273 Score: 502
Period size: 198 Copynumber: 1.9 Consensus size: 199
21147881 TGCCTCTCTG
* * * * * * *
21147891 GTCGGCTGAGCGCCCGCACGCTGGTTTTGGTAGGTTGGCTTAGGAATACGGAGTTCATTCCATGT
1 GTCGGCTGAGCGCCCGCACACTCGTTTTCGTAGGTTGACTTAGGAATACGAAGTTCATCCCATAT
* * * * **
21147956 CTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGTAGGATC
66 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAACAGGATC
** * * *
21148021 GGTAGCACGCAGGGGGGGATCGAGCTGATTCCTGGCTTACACATTCTGCCTCTCCGACCGACCTC
131 GACAGCACACAGGGGGGGATCGAGCTGATCCCTGGCTTACACATTCTACCTCTCCGACCGACCTC
21148086 TCCA
196 TCCA
* * *
21148090 GTCGGTTGAGCGCCCGCACACTCG-TTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-A
1 GTCGGCTGAGCGCCCGCACACTCGTTTTCGTAGGTTGACTTAGGAATACGAAGTTCAT-CCCATA
*
21148153 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACCAACAGGA
65 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGA-CAACAGGA
* * *
21148218 TCGACAGCACACA-GGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTACCTCTCC
129 TCGACAGCACACAGGGGGGGATCGAGCTGATCCCTGGCTTACACATTCTACCTCTCC
21148274 AACCAGTTGA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
198 118 0.75
199 39 0.25
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (199 bp):
GTCGGCTGAGCGCCCGCACACTCGTTTTCGTAGGTTGACTTAGGAATACGAAGTTCATCCCATAT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAACAGGATC
GACAGCACACAGGGGGGGATCGAGCTGATCCCTGGCTTACACATTCTACCTCTCCGACCGACCTC
TCCA
Found at i:21148512 original size:26 final size:26
Alignment explanation
Indices: 21148476--21148528 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21148466 GTTGGCTTAG
*
21148476 GCATATAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
21148502 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
21148528 G
1 G
21148529 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:21148845 original size:158 final size:159
Alignment explanation
Indices: 21148509--21148835 Score: 390
Period size: 158 Copynumber: 2.1 Consensus size: 159
21148499 TAAGCATACA
* * * *** * * * *
21148509 GAGTTCATTTCCAGTCTAAGATCGGATTGGACCGAGGGTTGTGGCAGCGGGACCGACAGTATGTA
1 GAGTTCATTCCCAATCTAAGATCGAACCAGACCGAAGGTTGTGGCAGCAGGACCGACAGCATGAA
* *
21148574 GAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCATCTCTGGCCGGTTCAGCACCCGAACA
66 GAGGGGGATCGGGTCGATCACCGGCTTGCGCATGATGCATCTCTGGCCGGTTCAGCACCCGAACA
*
21148639 CTCGTTTCGTGGGTTGACTTAGGCATAAG
131 CCCGTTTCGTGGGTTGACTTAGGCATAAG
* *
21148668 GAGTTCATTCCCAATCTAAGATCGAACCAGACCGAAGGTTGTGGCAGCAGGATCGTCAGCATGAA
1 GAGTTCATTCCCAATCTAAGATCGAACCAGACCGAAGGTTGTGGCAGCAGGACCGACAGCATGAA
* * * * * *
21148733 G-GGGGGA-CTGGGTC-AGTCACCGGCTTGCGTATGCTGCCTCTCTGGTCGGTTGAGCACCCGTA
66 GAGGGGGATC-GGGTCGA-TCACCGGCTTGCGCATGATGCATCTCTGGCCGGTTCAGCACCCGAA
* * * *
21148795 CGCCCTTTTCGTGGGTTGGCTTAGGCATAGG
129 CACCCGTTTCGTGGGTTGACTTAGGCATAAG
21148826 GAGTTCATTC
1 GAGTTCATTC
21148836 GATGTCTAAG
Statistics
Matches: 141, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
157 2 0.01
158 85 0.60
159 54 0.38
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.25
Consensus pattern (159 bp):
GAGTTCATTCCCAATCTAAGATCGAACCAGACCGAAGGTTGTGGCAGCAGGACCGACAGCATGAA
GAGGGGGATCGGGTCGATCACCGGCTTGCGCATGATGCATCTCTGGCCGGTTCAGCACCCGAACA
CCCGTTTCGTGGGTTGACTTAGGCATAAG
Found at i:21148886 original size:158 final size:158
Alignment explanation
Indices: 21148538--21149001 Score: 359
Period size: 158 Copynumber: 2.9 Consensus size: 158
21148528 GATCGGATTG
* * * * *
21148538 GACCGAGGGTTGTGGCAGCGGGACCGACAGTATGTAGAGGGGGATCGGGTCGATCCCCGGCTTGC
1 GACCGAGGGTTGTGGCAGCAGGA-CTACAGCATGAAGAGGGGGATCGGGTCGATCACCGGCTTGC
* *
21148603 GCATTATGCATCTCTGGCCGGTTCAGCACCCGAACACTCGTTTCGTGGGTTGACTTAGGCATAAG
65 GCATGATGCATCTCTGGCCGGTTCAGCACCCGAACACCCGTTTCGTGGGTTGACTTAGGCATAAG
*
21148668 GAGTTCATTCCCAATCTAAGATCGAACCA
130 GAGTTCATTCCCAATCTAAGACCGAACCA
*
21148697 GACCGAAGGTTGTGGCAGCAGGATCGT-CAGCATGAAG-GGGGGA-CTGGGTC-AGTCACCGGCT
1 GACCGAGGGTTGTGGCAGCAGGA-C-TACAGCATGAAGAGGGGGATC-GGGTCGA-TCACCGGCT
* * * * * * * * *
21148758 TGCGTATGCTGCCTCTCTGGTCGGTTGAGCACCCGTACGCCCTTTTCGTGGGTTGGCTTAGGCAT
62 TGCGCATGATGCATCTCTGGCCGGTTCAGCACCCGAACACCCGTTTCGTGGGTTGACTTAGGCAT
* * * * * *
21148823 AGGGAGTTCATT-CGATGTCTAAGCCCTAGCC-
127 AAGGAGTTCATTCCCA-ATCTAAGACCGAACCA
* * * * * * ** *
21148854 GAACTGAGGGTTGTGGTAGCAGGACTAACAGCACGTAGATGGGCA-CTGGACCTATGC-CCGGCT
1 G-ACCGAGGGTTGTGGCAGCAGGACT-ACAGCATGAAGAGGGGGATC-GGGTCGAT-CACCGGCT
* * * ** * * * *** * *
21148917 TGTGCATTATGCCTCTCCAGTCGGCTCAGCGCCCGAACGTTCATTTTGTGGGTTGACTTAGGCAT
62 TGCGCATGATGCATCTCTGGCCGGTTCAGCACCCGAACACCCGTTTCGTGGGTTGACTTAGGCAT
*
21148982 ACGGAGTTCATTCCCAATCT
127 AAGGAGTTCATTCCCAATCT
21149002 CAGATCGATC
Statistics
Matches: 242, Mismatches: 52, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 6 0.02
158 121 0.50
159 110 0.45
160 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
GACCGAGGGTTGTGGCAGCAGGACTACAGCATGAAGAGGGGGATCGGGTCGATCACCGGCTTGCG
CATGATGCATCTCTGGCCGGTTCAGCACCCGAACACCCGTTTCGTGGGTTGACTTAGGCATAAGG
AGTTCATTCCCAATCTAAGACCGAACCA
Found at i:21149243 original size:265 final size:265
Alignment explanation
Indices: 21148757--21149262 Score: 624
Period size: 265 Copynumber: 1.9 Consensus size: 265
21148747 AGTCACCGGC
* * * * *
21148757 TTGCGTATGCTGCCTCTCTGGTCGGTTGAGCACCCGTACGCCCTTTTCGTGGGTTGGCTTAGGCA
1 TTGCGTATGCTGCCTCTCCGATCGGCTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTAAGGCA
* * ** * *
21148822 TAGGGAGTTCATTCGATGTCTAAGCCCTAGCCGAACTGAGGGTTGTGGTAGCAGGACTAACAGCA
66 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGTAGCAGGACCAACAACA
* * * * * *
21148887 CGTAGATGGGCACTGGACCTATGCCCGGCTTGTGCATTATGCCTCTCCAGTCGGCTCAGCGCCCG
131 CGCAGATGGGCACTGGACCAATCCCCAGCTTGTGCATTATGCCTCTCCAGCCGGCTCAGCACCCG
* ** * *
21148952 AACGTTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTCAGATCGATCCGGAT
196 AACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAATCTCAGATCGATCCGGAT
21149017 GAGGG
261 GAGGG
* * **
21149022 TTGCGTATTCTGTCTCTCCGATCGGCTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTAAGGCA
1 TTGCGTATGCTGCCTCTCCGATCGGCTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTAAGGCA
* * * **
21149087 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGTTTGTGGTAGC-GTGACCGGCAAC
66 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGTAGCAG-GACCAACAAC
* * * *
21149151 ACGCAG-TGGGGGACTAGG-CCAATCCCCAGCTTGTGCATTCTGCCTCTTC-GACCGGCTGAGCA
130 ACGCAGAT-GGGCACT-GGACCAATCCCCAGCTTGTGCATTATGCCTCTCCAG-CCGGCTCAGCA
*
21149213 CCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCA
192 CCCGAACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCA
21149263 GTCTAAGCAT
Statistics
Matches: 201, Mismatches: 36, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
264 3 0.01
265 196 0.98
266 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.26
Consensus pattern (265 bp):
TTGCGTATGCTGCCTCTCCGATCGGCTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTAAGGCA
TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGTAGCAGGACCAACAACA
CGCAGATGGGCACTGGACCAATCCCCAGCTTGTGCATTATGCCTCTCCAGCCGGCTCAGCACCCG
AACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAATCTCAGATCGATCCGGAT
GAGGG
Found at i:21149273 original size:26 final size:26
Alignment explanation
Indices: 21149243--21149295 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21149233 GTTAACTTAG
21149243 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
** *
21149269 GCATATTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21149295 G
1 G
21149296 ATTAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21150058 original size:26 final size:26
Alignment explanation
Indices: 21150022--21150074 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21150012 GTTGGCTTAG
*
21150022 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCCT-GTCTAA
21150048 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCTGTCTAA
21150074 G
1 G
21150075 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCTGTCTAA
Found at i:21150558 original size:26 final size:26
Alignment explanation
Indices: 21150522--21150574 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21150512 GTTGGCTTAG
21150522 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
21150548 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21150574 G
1 G
21150575 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21151365 original size:26 final size:26
Alignment explanation
Indices: 21151335--21151387 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21151325 GTTGACTTAG
*
21151335 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
*
21151361 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
21151387 G
1 G
21151388 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Found at i:21151865 original size:26 final size:26
Alignment explanation
Indices: 21151836--21151888 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21151826 GTTGGCTTAG
21151836 GCATACAGAGCTCATTCC-ATGTCTAA
1 GCATACAGAGCTCATTCCTA-GTCTAA
** *
21151862 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCCTAGTCTAA
21151888 G
1 G
21151889 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCTAGTCTAA
Found at i:21153292 original size:26 final size:26
Alignment explanation
Indices: 21153242--21153293 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21153232 GTTGGCTTAG
*
21153242 GCATACGGAGTTCATTCCAGGTCTAA
1 GCATACGGAGTTCATTCCAGATCTAA
21153268 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCAGATCTAA
21153294 AAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGATCTAA
Found at i:21153896 original size:881 final size:880
Alignment explanation
Indices: 21152132--21153991 Score: 2668
Period size: 881 Copynumber: 2.1 Consensus size: 880
21152122 GATCAGGCCA
* * * * *
21152132 ATCCTCGACTTACGCATTCTGCCTCTCTGGCCGGCTGAGGGCCCGTACGCCCATTTCGTGGGTTG
1 ATCCCCGACTTGCGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCCCATTTCATGGGTTG
* ** * *
21152197 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACTGAGGGTTACGATAGCGAGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGATTACGACAGCGAGA
* * *
21152262 CCAACAGCACGTAGAGGGGGACCGGGCCGATCTCCGGCTTGCGCATTCTACCTCTCCGATCAGCT
131 CCAACAACACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCT
* * * * *
21152327 GAGTGCCCGCACGCTTATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCAT
196 GAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGGTCTAAGCAT
* * ** *
21152392 ACGGAGAGCATTCCCAGTCTAAGACTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTG
261 ACGGAGAGCATTCCCAATCTAAAACTTTGAGCCACGGTGCACACACTGGGCTCAGGCATGTGCTG
* * **
21152457 GTCCGCATTTTTTTCACTCGAGGCACCATCGTCGGAGCATCACCGGAGAGCCTAACCGGTGGCAT
326 GTCCGCATTTTTTACACTCGAGGCACCATCGTCGGAGCATCACCGAAGAGCCTAACCGACGGCAT
*
21152522 CGGGGGTTCCGACGATTGGGGGGGCCGGGGTGGTGCACACATGATGTGCGGTGGGTGCTGGTACT
391 CGGGGGTTCCGACGATTGGGGGGGCCGGGGTGGTGCACACATGATGTGCGATGGGTGCTGGTACT
* *
21152587 CGACTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
456 CGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCAT
* * *
21152652 TTGGGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
521 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAA
*
21152717 ACGATCACAAAATTTTCTCCACTTTGAGTTATTAGCTGAATCTTTTTGTGCATGCCAAAAAAAAT
586 ACGATCACAAAATCTTCTCCACTTTGAGTTATTAGCTGAATCTTTTTGTGCATGCCAAAAAAAAT
*
21152782 ACAAGGATCACCTCTACCAAATTTTGGGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCCGA
651 ACAAGGATCACCTCTACCAAATTTTGGGAAAAAACTCTTTCTAAAAAAATTTAAAAAAATCCCGA
21152847 ACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACAT
716 ACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACAT
* * * *
21152912 GAAAGCTTAGGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
781 GAAAGCTTAGGGGACCATTGTATCAATTTAAAAGCCAAAAAAATGGCATTGGCACGGCAAAAATA
21152977 TGAAGATGTGCTTGAACCCACCTACCACCCGTTCG
846 TGAAGATGTGCTTGAACCCACCTACCACCCGTTCG
* ** *
21153012 ATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCATCCGTACGCCCGTTTCATGGGTTG
1 ATCCCCGACTTGCGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCCCATTTCATGGGTTG
* * * *
21153077 GCTTATGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACTGAGGATTATGGCAGCGAGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGATTACGACAGCGAGA
*** * ** * * * *
21153142 CTGGCAATACGTAGAGGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTT
131 CCAACAACACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCT
* * *
21153207 GAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGGTCTAAGCAT
196 GAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGGTCTAAGCAT
** * *
21153272 ACGGAGTTCATTCCCAATCTAAAAGTTTGAGCCATGGTGCACACACTGGGCTCAGGCATGTGCTG
261 ACGGAGAGCATTCCCAATCTAAAACTTTGAGCCACGGTGCACACACTGGGCTCAGGCATGTGCTG
* * * * * * * *
21153337 GTGCCGTATTTTTTACGCTTGGGGCACCATCGTTGGAGCATCGCCGAAGATCCTAACCGACGGTA
326 GT-CCGCATTTTTTACACTCGAGGCACCATCGTCGGAGCATCACCGAAGAGCCTAACCGACGGCA
* * ** * * *
21153402 TTGTGGGTTCTTACGATTGGGGGGGTCGGGG-GGTGTACGCACATGATGTGCGATGGGTGTTGGT
390 TCGGGGGTTCCGACGATTGGGGGGGCCGGGGTGGTG--CACACATGATGTGCGATGGGTGCTGGT
* * * * *
21153466 ACTTGGCCCTTATGTTGGCCCGCTATCCCTCATCAAACCTTGAGAACTAACACCCCCTTAAAGAG
453 ACTCGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAG
*
21153531 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGGACACATTTTT
518 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTT
* * * * *
21153596 CAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAA
583 CAAACGATCACAAAATCTTCTCCACTTTGAGTTATTAGCTGAATCTTTTTGTGCATGCCAAAAAA
*
21153661 AATACAAGGATCACCTCTACCAAA-TTT-GGAAATAAACTCTTTCTAAAAAAATTTTAAAAAATC
648 AATACAAGGATCACCTCTACCAAATTTTGGGAAA-AAACTCTTTCTAAAAAAATTTAAAAAAATC
* * * *
21153724 CTGAACC-TGAAAAAGTTTCCAAAGTCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTT
712 CCGAACCAT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTT
* * *
21153788 CACATGAAGGCTTAGGGGACCATTGTATCAATTTACAAGCCAAAAAAATGGCATTGGCACGTCAA
776 CACATGAAAGCTTAGGGGACCATTGTATCAATTTAAAAGCCAAAAAAATGGCATTGGCACGGCAA
21153853 AAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCG
841 AAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCG
* * * * * *
21153893 ATCCCCGGCTTGCGCATCCTGCCTCTCCGGCCGACTGAGCGCCCGCACACTCATTTCATGGGTTG
1 ATCCCCGACTTGCGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCCCATTTCATGGGTTG
* * *
21153958 ACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGC
66 GCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
21153992 ATACAGAGTT
Statistics
Matches: 862, Mismatches: 112, Indels: 11
0.88 0.11 0.01
Matches are distributed among these distances:
880 288 0.33
881 345 0.40
882 229 0.27
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (880 bp):
ATCCCCGACTTGCGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCCCATTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGATTACGACAGCGAGA
CCAACAACACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCT
GAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGGTCTAAGCAT
ACGGAGAGCATTCCCAATCTAAAACTTTGAGCCACGGTGCACACACTGGGCTCAGGCATGTGCTG
GTCCGCATTTTTTACACTCGAGGCACCATCGTCGGAGCATCACCGAAGAGCCTAACCGACGGCAT
CGGGGGTTCCGACGATTGGGGGGGCCGGGGTGGTGCACACATGATGTGCGATGGGTGCTGGTACT
CGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCAT
TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAA
ACGATCACAAAATCTTCTCCACTTTGAGTTATTAGCTGAATCTTTTTGTGCATGCCAAAAAAAAT
ACAAGGATCACCTCTACCAAATTTTGGGAAAAAACTCTTTCTAAAAAAATTTAAAAAAATCCCGA
ACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACAT
GAAAGCTTAGGGGACCATTGTATCAATTTAAAAGCCAAAAAAATGGCATTGGCACGGCAAAAATA
TGAAGATGTGCTTGAACCCACCTACCACCCGTTCG
Found at i:21153994 original size:26 final size:26
Alignment explanation
Indices: 21153964--21154016 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21153954 GTTGACTTAG
21153964 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
21153990 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21154016 G
1 G
21154017 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21155219 original size:26 final size:26
Alignment explanation
Indices: 21155183--21155235 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21155173 GTTGACTTAG
21155183 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
21155209 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21155235 G
1 G
21155236 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21155492 original size:26 final size:26
Alignment explanation
Indices: 21155456--21155508 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21155446 GTTAGCTTAG
*
21155456 GCATACAGAGTTGATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21155482 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21155508 G
1 G
21155509 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21156720 original size:26 final size:26
Alignment explanation
Indices: 21156691--21156769 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
21156681 GTTGGCTTAG
21156691 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21156717 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21156743 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
21156769 G
1 G
21156770 ATCGGACTGG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 49 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21156940 original size:26 final size:26
Alignment explanation
Indices: 21156910--21156966 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
21156900 ATGGGTTGAC
21156910 CTAAGCATACGGAGTTCATCCCCAGT
1 CTAAGCATACGGAGTTCATCCCCAGT
* *
21156936 CTAAGCATATGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATCCCCAGT
21156962 CTAAG
1 CTAAG
21156967 ATTGGACCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATCCCCAGT
Found at i:21157440 original size:158 final size:156
Alignment explanation
Indices: 21156940--21157430 Score: 495
Period size: 158 Copynumber: 3.1 Consensus size: 156
21156930 CCCAGTCTAA
* * *
21156940 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAA-ATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
21157005 GCACGTAGGGGGGA-CTGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCAGCCAGCTGAGCGC
65 GCACGCAGGGGGGATC-GAGCCGATCCCCGGCTTGAGCATTATGCCTCTCCAGTCGGCTGAGCGC
* *
21157069 CCGTACGCTTGTTTCGTGGGTTAGCTTAG
129 CCGTACGCTCGTTTCGT-GGTTGGCTTAG
* ** ** * * *
21157098 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGATCGAC
1 GCATATGGAGTTCATTCCCA-GTCTAAATCGGA-CCAGACTGAGGGTTGCGGTAGCAGGATCGAC
* * * *
21157162 AGCACGCAGAGTGGGATCGAGCC-ATTCCCCGGCTTGTGCATTATGCCTCTCCAGTCGGCTCAAC
64 AGCACGCAG-GGGGGATCGAGCCGA-TCCCCGGCTTGAGCATTATGCCTCTCCAGTCGGCTGAGC
* * * *
21157226 GCTCGAACGCTCGTTTCCTCGGTTGACTTAG
127 GCCCGTACGCTCGTTTCGT-GGTTGGCTTAG
* * * *
21157257 GCATATGAAATTCATTCCCAGTCTAATATCGGATCAAACTGAGGGTTGCGGTAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAA-ATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * *
21157322 GCACACAGGGGGGATCGAGCCGGTCCCCGGCTTGAGCATTCTACCTTTTC-GATCGGCTGAGCAC
65 GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGAGCATTATGCCTCTCCAG-TCGGCTGAGCGC
*
21157386 CCGTACGCTCGTTTCGTGAGTTGGCTTGG
129 CCGTACGCTCGTTTCGTG-GTTGGCTTAG
*
21157415 GCATACGGAGTTCATT
1 GCATATGGAGTTCATT
21157431 TCATGTCTAA
Statistics
Matches: 265, Mismatches: 58, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 134 0.51
159 119 0.45
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCCAGTCTAAATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGGGGGGATCGAGCCGATCCCCGGCTTGAGCATTATGCCTCTCCAGTCGGCTGAGCGCCC
GTACGCTCGTTTCGTGGTTGGCTTAG
Found at i:21157464 original size:26 final size:26
Alignment explanation
Indices: 21157415--21157467 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21157405 GTTGGCTTGG
* *
21157415 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
21157441 GCATACAGAGTTCATTCC-TAGTCTAA
1 GCATACAGAGTTCATTCCAT-GTCTAA
21157467 G
1 G
21157468 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:21157985 original size:26 final size:26
Alignment explanation
Indices: 21157955--21158007 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21157945 GTTGGCTTAG
21157955 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21157981 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21158007 G
1 G
21158008 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21159980 original size:180 final size:180
Alignment explanation
Indices: 21159576--21160055 Score: 458
Period size: 180 Copynumber: 2.7 Consensus size: 180
21159566 NNNNNNCATT
*
21159576 TTTA-TTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
1 TTTATTTTTTTAAATC-TTT-CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTC
* *
21159640 CATATAAGCTTGTATGATAA---AAAAAATTGTTTTATGA-TAAAACAAAAGGTCAGGATGACTT
64 CATATAAGCTTGTAT--TAACTGAAAAAATTGTTTTATGACT-AAACAAAAGGTCAGAACGACTT
* * * *
21159701 AAAATAGATAATCATTCAAACGGCTATAATTATTTTAACTAATTTGGTAAACATA
126 AAAATAGACAATCATTCAAACAGCTATAACTATTTGAACTAATTTGGTAAACATA
* * * * *
21159756 -TT-TTTTTTTAAGTTTCTTACTTATT-ATTTTAGTAAGTATTAATAAATTAGCATTATTTTATT
1 TTTATTTTTTTAA--ATCTTTCTTATTAATTTTTG-AAATATTAATAAATTAGTATTATTTTATT
* * * * * * * *
21159818 CCATCTAAGCTTTTATTAACTGAAACAATTGTTTTATGACTAATCAAAAGGTGATAACGATTTTA
63 CCATATAAGCTTGTATTAACTGAAAAAATTGTTTTATGACTAAACAAAAGGTCAGAACGACTTAA
* ** * ** *
21159883 AATAGACATTTTTTTCAAATAG-TAATAACTATTTGAACTTGTTTGTTAAACATA
128 AATAGACA-ATCATTCAAACAGCT-ATAACTATTTGAACTAATTTGGTAAACATA
* * *
21159937 TTTATTTTTTTAAATCTTTCTTATTAATTTTTG-AATGTTAATAAATTAGTATTAATTTATTCTA
1 TTTATTTTTTTAAATCTTTCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCCA
* * * * * * * *
21160001 AATAGGCTTGTATGAACTGAAATAATTATTTTATGACCAAACAAAATGTTAGAAC
66 TATAAGCTTGTATTAACTGAAAAAATTGTTTTATGACTAAACAAAAGGTCAGAAC
21160056 AATTTCAAAC
Statistics
Matches: 240, Mismatches: 47, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
177 3 0.01
178 6 0.03
179 56 0.23
180 112 0.47
181 46 0.19
182 8 0.03
183 9 0.04
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (180 bp):
TTTATTTTTTTAAATCTTTCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCCA
TATAAGCTTGTATTAACTGAAAAAATTGTTTTATGACTAAACAAAAGGTCAGAACGACTTAAAAT
AGACAATCATTCAAACAGCTATAACTATTTGAACTAATTTGGTAAACATA
Found at i:21160376 original size:360 final size:364
Alignment explanation
Indices: 21159957--21160726 Score: 754
Period size: 360 Copynumber: 2.1 Consensus size: 364
21159947 TAAATCTTTC
* * * * * * *** * *
21159957 TTATTAATTTT-TGAATGTTAATAAATTAGTATTAATTTATTCTAAATAGGCTTGTATGAACTGA
1 TTATTAATTTTCAGAATATTATTAAATTAGTATTATTTTATTTTGAATAAAATAGTATGAACAGA
* * * * *
21160021 AATAATTATTTTATGACCAAACAA-AATGTTAGAACAATTTCAAACAGATAATTATTCTAATAAT
66 AACAATTATTTGATGACAAAACAAGAA-GTTAGAACAATTACAAACAGATAATTATTCAAATAAT
** * * * *
21160085 CTTAACCATTTCAATTGATTCGA-CAAAAAAATTTATTTTTTAAATATC-TTATTTATTAATTTT
130 CAAAACCATTTCAAATGATT-GAGCAAAAAAATTTACTTTTTAAATATCTTTACTGATTAATTTT
* * * *
21160148 C-AAAATATTATTAAATTTGCATTATTTTA-ATAAAAAAAACTTGTATGAA-TAAAACAATTGCT
194 CTAAAATATTAAT-AATTAGCATTATTTTATATAAAAAAAACTTATATGAACGAAAACAATTG-T
* * * * * *
21160210 TTGCGACAAAAGAAAAGGTCCTAACAATTTGAAACAGATAATTGTTCA-TATA-GTTTTAACTAT
257 TTACGA-AAAACAAAAGATCATAACAATTTGAAACAAATAATTGTTCATTATAGGTCTTAACTAT
* * * * * *
21160273 TTGAACTAGTTCGA-C-ATTTAGATTTATTTTTTAATTTTCCTGG
321 TTGAACTAGTT-GAGCAAATAAGATTGATGTTTTAAATTTCCTAG
*
21160316 TTATTAAGTTTT-AGAATATTCTTAAATTAGTATTATTTTATTTTGAATAAAATAGTATGAACAG
1 TTATTAA-TTTTCAGAATATTATTAAATTAGTATTATTTTATTTTGAATAAAATAGTATGAACAG
* * * * * ** * * * *
21160380 GACCAATTGTTTGATGACAAAATAAGAAGTTATAATGATTAGAAATAGATAGTTATTCAAATAGT
65 AAACAATTATTTGATGACAAAACAAGAAGTTAGAACAATTACAAACAGATAATTATTCAAATAAT
* * * * * * * *
21160445 CAAAACTATTTGAAATGGTTTAGTAAATAGATTTACTTTTTAAATCTCTTTACTGATTAATTTTC
130 CAAAACCATTTCAAATGATTGAGCAAAAAAATTTACTTTTTAAATATCTTTACTGATTAATTTTC
* * ** * * *
21160510 TAAAATATTAATAATTAGTATTATTTTATTTCGAATAAACTTATATTAACGAAGACAATTGTTTA
195 TAAAATATTAATAATTAGCATTATTTTATATAAAAAAAACTTATATGAACGAAAACAATTGTTTA
* * * *
21160575 TGAGAAACAAAAGATCATAACAATTTGAAATAAATAATTGTTCATTGTAGGTCTTAACTATTTGA
260 CGAAAAACAAAAGATCATAACAATTTGAAACAAATAATTGTTCATTATAGGTCTTAACTATTTGA
* *
21160640 ACTAGTTTAGCAAATAAGATTGATGTTTTAAATTTCTTAG
325 ACTAGTTGAGCAAATAAGATTGATGTTTTAAATTTCCTAG
21160680 TTATTAATTTTCAGAATATTATTAAATTAGTATTATTTTATTTTGAA
1 TTATTAATTTTCAGAATATTATTAAATTAGTATTATTTTATTTTGAA
21160727 ATAGGCTTAT
Statistics
Matches: 327, Mismatches: 72, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
359 8 0.02
360 124 0.38
361 65 0.20
362 33 0.10
363 35 0.11
364 62 0.19
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (364 bp):
TTATTAATTTTCAGAATATTATTAAATTAGTATTATTTTATTTTGAATAAAATAGTATGAACAGA
AACAATTATTTGATGACAAAACAAGAAGTTAGAACAATTACAAACAGATAATTATTCAAATAATC
AAAACCATTTCAAATGATTGAGCAAAAAAATTTACTTTTTAAATATCTTTACTGATTAATTTTCT
AAAATATTAATAATTAGCATTATTTTATATAAAAAAAACTTATATGAACGAAAACAATTGTTTAC
GAAAAACAAAAGATCATAACAATTTGAAACAAATAATTGTTCATTATAGGTCTTAACTATTTGAA
CTAGTTGAGCAAATAAGATTGATGTTTTAAATTTCCTAG
Found at i:21160571 original size:182 final size:173
Alignment explanation
Indices: 21160115--21160998 Score: 660
Period size: 182 Copynumber: 4.9 Consensus size: 173
21160105 CGACAAAAAA
* * *
21160115 ATTTATTTTTTAAATATCTTATTTATTAATTTTC-AAAATATTATTAAATTTGCATTATTTTA-A
1 ATTTA-TTTTTAAAT-TCTTA-TTATTAATTTTCTAAAATATTATTAAATTAGTATTATTTTATT
** * * * * ** **
21160178 TAAAAAAAACTTGTATGAATAAAACAATTGCTTTGCGACAAAAGAAAAGGTCCTAACAATTTGAA
63 TTGAATAAACTTATATGAACAAGACAATTG-TTTATGA-AAAA-AAAA-GTTATAACAATTTGAA
* * ** * * * *
21160243 ACAGATAATTGTTCATATAGTTTTAACTATTTGAACTAG-TTCG-ACATTTAG
124 ATAGAT-ATTGTTCAAATAGTCATAACTATTTGAAATGGTTTAGTA-A-ATAG
* ** * * *
21160294 ATTTATTTTTTAATTTTCCTGGTTATTAAGTTT-TAGAATATTCTTAAATTAGTATTATTTTATT
1 ATTTA-TTTTTAA-ATT-CTTATTATTAATTTTCTAAAATATTATTAAATTAGTATTATTTTATT
* * ** *
21160358 TTGAATAAA-ATAGTATGAACAGGACCAATTGTTTGATGACAAAATAAGAAGTTATAATGATTAG
63 TTGAATAAACTTA-TATGAACAAGA-CAATTGTTT-ATGA-AAAA-AA-AAGTTATAACAATTTG
* *
21160422 AAATAGATAGTTATTCAAATAGTCAAAACTATTTGAAATGGTTTAGTAAATAG
122 AAATAGATA-TTGTTCAAATAGTCATAACTATTTGAAATGGTTTAGTAAATAG
* *
21160475 ATTTACTTTTTAAATCTCTTTACTGATTAATTTTCTAAAATATTAAT-AATTAGTATTATTTTAT
1 ATTTA-TTTTTAAAT-TC-TTA-TTATTAATTTTCTAAAATATTATTAAATTAGTATTATTTTAT
* * * *
21160539 TTCGAATAAACTTATATTAACGAAGACAATTGTTTATGAGAAACAAAAGATCATAACAATTTGAA
62 TTTGAATAAACTTATATGAAC-AAGACAATTGTTTATGA-AAAAAAAAG-TTATAACAATTTGAA
* ** * * * *
21160604 ATAAATAATTGTTCATTGTAGGTCTTAACTATTTGAACTAGTTTAGCAAATAAG
124 ATAGAT-ATTGTTCA-AATA-GTCATAACTATTTGAAATGGTTTAGTAAAT-AG
* *
21160658 ATTGATGTTTTAAATTTCTTAGTTATTAATTTTC-AGAATATTATTAAATTAGTATTATTTTATT
1 ATTTAT-TTTTAAA-TTCTTA-TTATTAATTTTCTAAAATATTATTAAATTAGTATTATTTTATT
** *
21160722 TTGAAATAGGCTTATATGAACAAAAACAATTGTTTTATGATAGAAAAAAAGGTTATAACAATTTG
63 TTG-AATAAACTTATATGAAC-AAGACAATTG-TTTATGA-A-AAAAAAA-GTTATAACAATTTG
* *
21160787 AAATAGATATTGTTCAAATAGTCATAACTATTTGAATTGGTTTGGTAAATAG
122 AAATAGATATTGTTCAAATAGTCATAACTATTTGAAATGGTTTAGTAAATAG
* * *
21160839 ATTTTTTTTTAAA-TC-TATTATTAATTCT-TGAAATATTATTAAATTAGTATTATTTTATTTTG
1 ATTTATTTTTAAATTCTTATTATTAATTTTCTAAAATATTATTAAATTAGTATTATTTTATTTTG
** * *
21160901 AATAGGCTTCTATATTGAA-AAG-CAATTGTTTTAGGAGAAAACAAAAAGTAATAACAATTTGAA
66 AATAAAC-T-TATA-TGAACAAGACAATTG-TTTA--TGAAAA-AAAAAGTTATAACAATTTGAA
* * * *
21160964 ATAGATAGTTGTTTAAATGGCCATAATTATTTGAA
124 ATAGATA-TTGTTCAAATAGTCATAACTATTTGAA
21160999 TTGATTTATT
Statistics
Matches: 571, Mismatches: 97, Indels: 77
0.77 0.13 0.10
Matches are distributed among these distances:
175 42 0.07
176 73 0.13
177 8 0.01
178 6 0.01
179 52 0.09
180 54 0.09
181 97 0.17
182 141 0.25
183 55 0.10
184 17 0.03
185 25 0.04
186 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.42
Consensus pattern (173 bp):
ATTTATTTTTAAATTCTTATTATTAATTTTCTAAAATATTATTAAATTAGTATTATTTTATTTTG
AATAAACTTATATGAACAAGACAATTGTTTATGAAAAAAAAAGTTATAACAATTTGAAATAGATA
TTGTTCAAATAGTCATAACTATTTGAAATGGTTTAGTAAATAG
Found at i:21160805 original size:364 final size:357
Alignment explanation
Indices: 21160217--21160976 Score: 871
Period size: 364 Copynumber: 2.1 Consensus size: 357
21160207 GCTTTGCGAC
* * * * *
21160217 AAAAGAAAAGGTCCTAACAATTTGAAACAGATAATTGTTCATATAGTTTTAACTATTTGAACTAG
1 AAAACAAAAGATCATAACAATTTGAAATAGATAATTGTTCATATAGTCTTAACTATTTGAACTAG
* * * * * * * *
21160282 TTCGACATTTAGATTTATTTTTTAATTTTCCTGGTTATTAAGTTTTAGAATATTCTTAAATTAGT
66 TTAGACAATAAGATTGATGTTTTAAATTTCCTAGTTATTAAGTTTTAGAATATTATTAAATTAGT
** *
21160347 ATTATTTTATTTTGAATAAAATAGTATGAACAGGACCAATTGTTTGATGACAAAATAAGAAGTTA
131 ATTATTTTATTTTGAATAAAATAGTATGAACAAAAACAATTGTTTGATGACAAAATAAGAAGTTA
**
21160412 TAATGATTAGAAATAGATAGTTATTCAAATAGTCAAAACTATTTGAAATGGTTTAGTAAATAGAT
196 TAACAATTAGAAATAGATAGTTATTCAAATAGTCAAAACTATTTGAAATGGTTTAGTAAATAGAT
*
21160477 TTACTTTTTAAATCTCTTTACTGATTAATTTTCTAAAATATTAAT-AATTAGTATTATTTTATTT
261 TT-CTTTTTAAA--TC--TA-TGATTAATTCT-TAAAATATTAATAAATTAGTATTATTTTATTT
*
21160541 CGAATAAAC-T-TATATT-AACGAAGACAATTG-TTTATGAG
319 CGAATAAACTTCTATATTGAA--AAG-CAATTGTTTTAGGAG
* *
21160579 -AAACAAAAGATCATAACAATTTGAAATAAATAATTGTTCATTGTAGGTCTTAACTATTTGAACT
1 AAAACAAAAGATCATAACAATTTGAAATAGATAATTGTTCA-TATA-GTCTTAACTATTTGAACT
*
21160643 AGTTTAG-CAAATAAGATTGATGTTTTAAATTTCTTAGTTATTAA-TTTTCAGAATATTATTAAA
64 AG-TTAGAC-AATAAGATTGATGTTTTAAATTTCCTAGTTATTAAGTTTT-AGAATATTATTAAA
*** * *
21160706 TTAGTATTATTTTATTTTGAAATAGGCTTA-TATGAACAAAAACAATTGTTTTATGATAGAAA-A
126 TTAGTATTATTTTATTTTG-AATA-AAATAGTATGAACAAAAACAATTGTTTGATGACA-AAATA
* * * * *
21160769 A-AAGGTTATAACAATTTGAAATAGATA-TTGTTCAAATAGTCATAACTATTTGAATTGGTTTGG
188 AGAA-GTTATAACAATTAGAAATAGATAGTTATTCAAATAGTCAAAACTATTTGAAATGGTTTAG
* * * *
21160832 TAAATAGATTTTTTTTTAAATCTATTATTAATTCTTGAAATATTATTAAATTAGTATTATTTTAT
252 TAAATAGATTTCTTTTTAAATCTATGATTAATTCTTAAAATATTAATAAATTAGTATTATTTTAT
* **
21160897 TTTGAATAGGCTTCTATATTGAAAAGCAATTGTTTTAGGAG
317 TTCGAATAAACTTCTATATTGAAAAGCAATTGTTTTAGGAG
* *
21160938 AAAACAAAA-AGTAATAACAATTTGAAATAGATAGTTGTT
1 AAAACAAAAGA-TCATAACAATTTGAAATAGATAATTGTT
21160977 TAAATGGCCA
Statistics
Matches: 339, Mismatches: 43, Indels: 34
0.81 0.10 0.08
Matches are distributed among these distances:
357 10 0.03
358 40 0.12
359 14 0.04
360 39 0.12
361 39 0.12
362 3 0.01
363 32 0.09
364 108 0.32
365 49 0.14
366 5 0.01
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.41
Consensus pattern (357 bp):
AAAACAAAAGATCATAACAATTTGAAATAGATAATTGTTCATATAGTCTTAACTATTTGAACTAG
TTAGACAATAAGATTGATGTTTTAAATTTCCTAGTTATTAAGTTTTAGAATATTATTAAATTAGT
ATTATTTTATTTTGAATAAAATAGTATGAACAAAAACAATTGTTTGATGACAAAATAAGAAGTTA
TAACAATTAGAAATAGATAGTTATTCAAATAGTCAAAACTATTTGAAATGGTTTAGTAAATAGAT
TTCTTTTTAAATCTATGATTAATTCTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
ACTTCTATATTGAAAAGCAATTGTTTTAGGAG
Found at i:21161037 original size:165 final size:169
Alignment explanation
Indices: 21160680--21161096 Score: 447
Period size: 165 Copynumber: 2.4 Consensus size: 169
21160670 AATTTCTTAG
*
21160680 TTATTAATTTTCAGAATATTATTAAATTAGTATTATTTTATTTTGAAATAGGCTTATATGAACAA
1 TTATTAATTTTGA-AATATTATTAAATTAGTATTATTTTATTTTG-AATAGGCTTATATGAACAA
* * * * *
21160745 AAACAATTGTTTTATGATAGAAAAAAAGGTTATAACAATTTGAAATAGATATTGTTCAAATAGTC
64 AAACAATTGTTTTAGGAGAGAAAAAAAAGTAATAACAATTTGAAATAGATATTGTTCAAATAGCC
* *
21160810 ATAACTATTTGAATTGGTTTGGTAAATAGATTTTTTTTTAAATCTA
129 ATAACTATTTGAATTGGTAT-GT--ATA-A-TTTTTTTAAAATCTA
* **
21160856 TTATTAATTCTTGAAATATTATTAAATTAGTATTATTTTATTTTGAATAGGCTTCTAT-ATTGAA
1 TTATTAATT-TTGAAATATTATTAAATTAGTATTATTTTATTTTGAATAGGCTTATATGA-ACAA
* * *
21160920 AAGCAATTGTTTTAGGAGA-AAACAAAAAGTAATAACAATTTGAAATAGATAGTTGTTTAAATGG
64 AAACAATTGTTTTAGGAGAGAAA-AAAAAGTAATAACAATTTGAAATAGATA-TTGTTCAAATAG
* *
21160984 CCATAATTATTTGAATT-G-AT-T-T-A-TTTTTTAAAATCTC
127 CCATAACTATTTGAATTGGTATGTATAATTTTTTTAAAATCTA
* * * * * *
21161021 TTATTAACTTTTGAAATATTAATACAA-TAGTATTATTTTAGTTTGGATAAGCTTTTATGAACTA
1 TTATTAA-TTTTGAAATATTATTA-AATTAGTATTATTTTATTTTGAATAGGCTTATATGAACAA
*
21161085 AAAGAATTGTTT
64 AAACAATTGTTT
21161097 ATGGCAAAAC
Statistics
Matches: 208, Mismatches: 26, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
165 70 0.34
166 5 0.02
167 1 0.00
169 1 0.00
172 1 0.00
174 5 0.02
175 57 0.27
176 65 0.31
177 3 0.01
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.44
Consensus pattern (169 bp):
TTATTAATTTTGAAATATTATTAAATTAGTATTATTTTATTTTGAATAGGCTTATATGAACAAAA
ACAATTGTTTTAGGAGAGAAAAAAAAGTAATAACAATTTGAAATAGATATTGTTCAAATAGCCAT
AACTATTTGAATTGGTATGTATAATTTTTTTAAAATCTA
Found at i:21161434 original size:179 final size:175
Alignment explanation
Indices: 21161002--21161514 Score: 451
Period size: 183 Copynumber: 2.9 Consensus size: 175
21160992 ATTTGAATTG
21161002 ATTTATTTTTTAAAATCTCTTATTAACTTTTGAAATATTAATACAA-TAGTATTATTTTAGTTTG
1 ATTTATTTTTTAAAATCTCTTATTAACTTTTG-AATATTAATA-AATTAGTATTATTTTA-TTTG
* * * * * * * *
21161066 GATAAGCTTTTATGAACTAAAAGAATTGTTTATGGCAAAACAAAAGGTCATAATGATTTTAAATT
63 AATAAGCTTGTATGAACTGAAACAATTATTTATGACAAAACAAAAGGTCAAAATGATTTGAAATT
* * * * * * *
21161131 GATAATTGTTCAAATCATCATAACTATTCAAATTTGTTCGATAAACAA
128 GAAAATTATTCAAATCATCATAACCATTCAAACTAGTTCAACAAACAA
* * *
21161179 ATTTATTTTTTCAAATCTCTTGCTTATTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATT
1 ATTTATTTTTT-AAA-ATC-T-CTTATTAA-CTTTTGAATATTAATAAATTAGTATTATTTTATT
** * *
21161244 CCAAGTAAGCTTGTATGAACTGAAACAATTATTCTATGACTAAACAAAAAGGTTAAAATGATTTG
61 TGAA-TAAGCTTGTATGAACTGAAACAATTATT-TATGACAAAAC-AAAAGGTCAAAATGATTTG
* ** * ** *
21161309 AAATT-AAAACTTATTCTAATTGTCTTAACCATTTGAACTAGTTCAACAAACAC
123 AAATTGAAAA-TTATTCAAATCATCATAACCATTCAAACTAGTTCAACAAACAA
* * * *
21161362 ATTTATTTTTTTAAGTCTCTTACTAAGTTTTAGAATATTAATAAATTAGTATTATTTTTATTTGA
1 ATTTATTTTTTAAAATCTCTTATTAACTTTT-GAATATTAATAAATTAGTATTA-TTTTATTTGA
* * * * ** * *
21161427 ATAAGCTTGTATGATCAGAAATAATTATTTTATAAGGAAAC-AAAGATCATAATGATTT-AAGAT
64 ATAAGCTTGTATGAACTGAAACAATTA-TTTATGACAAAACAAAAGGTCAAAATGATTTGAA-AT
* *
21161490 TGATATTTATTCAAAT-AGTCATAAC
127 TGAAAATTATTCAAATCA-TCATAAC
21161515 TTGCTTTTTA
Statistics
Matches: 270, Mismatches: 50, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
176 2 0.01
177 43 0.16
178 9 0.03
179 61 0.23
180 18 0.07
181 56 0.21
182 19 0.07
183 62 0.23
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (175 bp):
ATTTATTTTTTAAAATCTCTTATTAACTTTTGAATATTAATAAATTAGTATTATTTTATTTGAAT
AAGCTTGTATGAACTGAAACAATTATTTATGACAAAACAAAAGGTCAAAATGATTTGAAATTGAA
AATTATTCAAATCATCATAACCATTCAAACTAGTTCAACAAACAA
Found at i:21161554 original size:137 final size:137
Alignment explanation
Indices: 21161389--21161647 Score: 326
Period size: 137 Copynumber: 1.9 Consensus size: 137
21161379 TCTTACTAAG
* * * *
21161389 TTTTAGAATATTAATAAATTAGTATTATTTT-TATTTGAATAAGCTTGTATGATCAGAAATAATT
1 TTTTAGAAAATTAATAAAGTAGTATTATTTTAT-TTTGAATAAGCTTGTATGAACAGAAACAATT
* * *
21161453 ATTTTATAAGGAAAC-AAAGATCATAATGA-TTTAAGATTGATATTTATTCAAATAGTCATAACT
65 ATTTTATAAGAAAACAAAAGATC-TAATGACTTTAA-ATAGATAATTATTCAAATAGTCATAACT
21161516 TGCTTTTTAA
128 TGCTTTTTAA
* * * * * *
21161526 TTTTTGAAAATTAATAAAGTAGTATTATTTTATTTTGGATAAGTTTTTATGAACTGAAACAATTG
1 TTTTAGAAAATTAATAAAGTAGTATTATTTTATTTTGAATAAGCTTGTATGAACAGAAACAATTA
* * *
21161591 TTTTATGATAAAACAAAAGGTCTAATGACTTTAAATAGATAATTATTCAAATAGTCA
66 TTTTATAAGAAAACAAAAGATCTAATGACTTTAAATAGATAATTATTCAAATAGTCA
21161648 AATCTATTCA
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
137 91 0.88
138 12 0.12
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.42
Consensus pattern (137 bp):
TTTTAGAAAATTAATAAAGTAGTATTATTTTATTTTGAATAAGCTTGTATGAACAGAAACAATTA
TTTTATAAGAAAACAAAAGATCTAATGACTTTAAATAGATAATTATTCAAATAGTCATAACTTGC
TTTTTAA
Found at i:21162673 original size:181 final size:179
Alignment explanation
Indices: 21161522--21162936 Score: 1261
Period size: 181 Copynumber: 7.9 Consensus size: 179
21161512 AACTTGCTTT
* * * * * * *
21161522 TTAATTTTT-GAAAATTAATAAAGTAGTATTATTTTATTTTGGATAAGTTTTTATGAACTGAAAC
1 TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAACAGAAAC
* *
21161586 AATTGTTTTATGATAAAACAAAAGGTC-TAATGACTTT-AAATAGATAATTATTCAAATAGTCA-
66 AATTGTTTTATGACAAAACAAAAGGTCATAATGA-TTTGAAATAGATAATTGTTCAAATAGTCAT
* * *
21161648 AATCTATTCAAACTTGTTTGATAAATAGA-TT-TTTTTAAAATCTTTTGCTCA
130 AA-CTATTTAAACTTGTTTGGTAAATAGATTTATTTTTAAAAT-TTTT-CTTA
* * * *
21161699 TT-ATTTTT-GAATGTTAATAAATTAGTATTATTTCA-TTCTGAATAAGCTTGTATGAATTA-AA
1 TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTATATGAA-CAGAA
* * * ** * * * *
21161760 ATAATTGTTTTATAACTAAACAACGGGTCAAAATGATTTGAAGTAGATAATTGTTCTAATAGTCC
64 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCA
* ** * * *
21161825 TAACTATTTGAACCGGTTCGGTAAATACATTTATTTTTTAAA--TTTCTTA
129 TAACTATTTAAACTTGTTTGGTAAATAGATTTATTTTTAAAATTTTTCTTA
* * *
21161874 TTAATTTTTGGAATATTATTAAATTAGTATTATTTTAATTCGAATAAGCTTATATGAAAAGAAAC
1 TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAACAGAAAC
** * * * *
21161939 AATTGTTTTATGATGAAA-TAAAGATTCATAATGATTT-AAGATAGATGATTGTTCACATAGTCA
66 AATTGTTTTATGACAAAACAAAAG-GTCATAATGATTTGAA-ATAGATAATTGTTCAAATAGTCA
* * *
21162002 TAACTATTTAAACTAT-TTCT-GTAAACAAATTTAGTTTTT-AAA--TCTCTTA
129 TAACTATTTAAACT-TGTT-TGGTAAATAGATTTA-TTTTTAAAATTTTTCTTA
*** * * * * ** *
21162051 TTAATTTTCAAAATTTTAATAGATCAGTATTATTTTATTTTGAATAATTTTGCTATGAACAGAAA
1 TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTT-ATATGAACAGAAA
* * * * * * *
21162116 CAATTGTTTTATTAAAAAACAAAAGGTCATAAAAGATTTGAAATAAATAATTATTCAAATGGACA
65 CAATTGTTTTATGACAAAACAAAAGGTCAT-AATGATTTGAAATAGATAATTGTTCAAATAGTCA
* * * * * * *
21162181 TGACTATTTGAATTTGTTTGGTAAATAGATTTACTTTT-AAATCTCCTACCTA
129 TAACTATTTAAACTTGTTTGGTAAATAGATTTATTTTTAAAAT-T-TTTCTTA
* * *
21162233 TTAATTTTTAGAATATTAATAAATTAGTATTATTTT-TTTCGAATAAACTTATATGAATAGAAAC
1 TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAACAGAAAC
* * * *
21162297 AATT-ATTTATGACAAAACAAAAGATCATAACT-ATTTGAAATAAATAATTGTTCAAAGAGGCAT
66 AATTGTTTTATGACAAAACAAAAGGTCATAA-TGATTTGAAATAGATAATTGTTCAAATA-G--T
* * * * *
21162360 AATAACTATTTAAACTTGCTCGATAAACAGATTTATTTTTTAAAA----TCTTA
127 CATAACTATTTAAACTTGTTTGGTAAATAGATTTA-TTTTTAAAATTTTTCTTA
* * * * *
21162410 TTAATTTGTGAAATATTAATAAACTAGTATTATTTTATTTCGAATATGCTTGTATGAACAGAAAC
1 TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAACAGAAAC
** * *
21162475 AATTGGCTTATGACAAAACAAAAGCTCATAACT-ATTTGAAATAGATAATTGTTCAAATAGTCAA
66 AATTGTTTTATGACAAAACAAAAGGTCATAA-TGATTTGAAATAGATAATTGTTCAAATAGTCAT
* * *
21162539 AACTATTTGAA-TGTGTTTAGAAAATAGATTTATTTTTAAAATTTTTACTTA
130 AACTATTTAAACT-TGTTTGGTAAATAGATTTATTTTTAAAATTTTT-CTTA
* * *
21162590 CTAATTTTTTGGAATATTAATAAATTTA-TATTTTTTTATTTGGAATAAGCTTATATGAACAGAA
1 TTAA-TTTTTGGAATATTAATAAA-TTAGTATTATTTTATTTCGAATAAGCTTATATGAACAGAA
* ** * * *
21162654 ACAATTATTTTATGACAAAACAAAATATCATAATGATTTGAAATAAAAAATAGTTCAAATAGTCA
64 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCA
* * * * * **
21162719 TAACTATTCAAACTTGTTCGGTAAATAGATTCATTTTTTAAATCTCTTGCAAA
129 TAACTATTTAAACTTGTTTGGTAAATAGATTTATTTTTAAAAT-T-TTTCTTA
* * * * *
21162772 TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCCTATATTAACAGATAT
1 TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAACAGAAAC
** * * * * *
21162837 AATTGTTTTATGATGAAACAAAATGTCATAACGATTTGAAATAGATAATTATTCAAATAGTTATG
66 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
* ** * *
21162902 ACTATTTGAACTTGTAAGGTAAACATATTTATTTT
131 ACTATTTAAACTTGTTTGGTAAATAGATTTATTTT
21162937 AAGATCTTTT
Statistics
Matches: 996, Mismatches: 195, Indels: 90
0.78 0.15 0.07
Matches are distributed among these distances:
175 17 0.02
176 110 0.11
177 243 0.24
178 106 0.11
179 131 0.13
180 29 0.03
181 308 0.31
182 47 0.05
183 5 0.01
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (179 bp):
TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAACAGAAAC
AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
ACTATTTAAACTTGTTTGGTAAATAGATTTATTTTTAAAATTTTTCTTA
Found at i:21162988 original size:64 final size:61
Alignment explanation
Indices: 21162887--21163010 Score: 212
Period size: 64 Copynumber: 2.0 Consensus size: 61
21162877 ATAGATAATT
21162887 ATTCAAATAGTTATGACTATTTGAACTTGTAAGGTAAACATATTTATTTTAAGATCTTTTACTA
1 ATTCAAATAGTTATGACTATTTGAACTTGTAAGGTAAACATATTTA--TTAA-ATCTTTTACTA
*
21162951 ATTCAAATAGTTATGACTATTTGAACTTGTATGGTAAACATATTTATTAAATCTTTTACT
1 ATTCAAATAGTTATGACTATTTGAACTTGTAAGGTAAACATATTTATTAAATCTTTTACT
21163011 CATTAATTGT
Statistics
Matches: 59, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
61 10 0.17
62 4 0.07
64 45 0.76
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.44
Consensus pattern (61 bp):
ATTCAAATAGTTATGACTATTTGAACTTGTAAGGTAAACATATTTATTAAATCTTTTACTA
Found at i:21164197 original size:180 final size:176
Alignment explanation
Indices: 21163722--21166427 Score: 1426
Period size: 181 Copynumber: 15.1 Consensus size: 176
21163712 TTTATTTTTT
* * * * * **
21163722 AAATAATACTATTTTATTAACATTCAAAAAATTAATAAGCACGAAATTAAAAAAATAAATCTAT-
1 AAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAAGAGATTTTAAAAATAAAT-T-TG
* * * * *
21163786 TTACCAAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTAAAACCATTAT-AACC
63 TTACTAAACAA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAA-C
* * * * *
21163850 TTTTATTTTATCATAAAACAATTG-TTTCAGTTCATA-ATAGCTTATCTGATATA
126 TTTTATTTTGTCATAAAACAATTGTTTTTA--TCATACA-A-TTTATTTGAAATA
* * * * ** * *
21163903 AAATAATATTACTTTATTAATATTTTAAAAATTGATAAGTTGGAGATTTAAAAAATAAATCAAT-
1 AAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTTTAAAAATAAAT--TTG
* ** * * * * * *
21163967 TTATCGAATTAGTTCAAATAATTATGGCCATTTGAATAATTATCTATTTC-AATCATTATGAACT
63 TTA-CTAAACAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAACT
*
21164031 TTTATTTTGTTCATAAAACAATTGTTTTTCATCATACAATTCTATTTGGAAT-
127 TTTATTTTG-TCATAAAACAATTGTTTTT-ATCATACAATT-TATTTGAAATA
* * *
21164083 AAATAATAGTAAGTTTATTAATATGTCAAAAGTTAATAAGTAGGAGATTTTAAAAATAAATTTGT
1 AAATAATACTAA-TTTATTAATAT-TCAAAAATTAATAAGTAAGAGATTTTAAAAATAAATTTGT
* * * * *
21164148 TACTAAACCAATTCAAATGGTTATGACTATTTGAATAATTATATATTTCAAATTGTTA--AACCT
64 TACTAAA-CAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAACTT
* * * * * * ** * *
21164211 GTGTTCTATCAT-AAA-AATTATTTATGTTTGTTACAAGCTTATTCGAAATA
128 TTATTTTGTCATAAAACAATTGTTT-T-TATCATACAA-TTTATTTGAAATA
* * * * * * *
21164261 AAATAACACTAATATAATAATATCTTAAAAATTAATAACTAAGGGGA--TTAAACAATAAATTTA
1 AAATAATACTAATTTATTAATAT-TCAAAAATTAATAAGTAA-GAGATTTTAAA-AATAAATTTG
* * * * * * * *
21164324 TT--TGAACTAATTCAAATAGTTAAG-GTATATGAACAATTCTTTATTT-AAAACGTTATGACCT
63 TTACTAAAC-AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAACT
* * * * * **
21164385 TTTGTTTATTGT-A-AAAA-AAAT-TTTTTAGTTCTTAGTAACTTATTCAAAATA
127 TTT-ATT-TTGTCATAAAACAATTGTTTTTA--TCATA-CAATTTATTTGAAATA
* * * *
21164436 AAATAAAAACAAATCTATTAATATTTCAAAAA-AAAT-AGTAAGAGATTTTAAAAA-ATAATTTC
1 AAAT-AATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTTTAAAAATA-AATTT-
* * * ** * * * *
21164498 CATTTGCTGAACCAGCTCAAACACTTATGACTATTTGAACAATTATCGATTTCAAATCATTATGA
62 --GTTACT-AAACAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGA
* * * * * * * *
21164563 CCTTTTGTTTTGTCATAAAATAAATT-TTTTTTTCAAATAAGTTT-GTTCAAATA
124 ACTTTTATTTTGTCATAAAA-CAATTGTTTTTATCATACAA-TTTATTTGAAATA
* * * ** * *
21164616 AAATAATATTCATTTATTACTATTTTGAAAATTAATAAGTAAGAGAGTTAAAAAATAAATTTGTT
1 AAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTTTAAAAATAAATTTG-T
* * * * * *
21164681 TACTAAATTAACTCAATTAGTT-TAACTATTTGAAGAATTATTTATTTCAAA-CTGTTATG-ACT
64 TACTAAA-CAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATC-GTTATGAACT
* * * * *
21164743 AGTTGTTTTGTCATAAAACAAATT-TTTCTAGTCATACAGTCTTA-TT-CAATA
127 -TTTATTTTGTCATAAAAC-AATTGTTTTTA-TCATACAAT-TTATTTGAAATA
* * * * * * *
21164794 AAGTAATGCTAATTTATTAATATTCTAAAATTTAATAACTAATGA-ATTTAAAAAATGAATCTGT
1 AAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAA-GAGATTTTAAAAATAAATTTGT
*** * * * * * *
21164858 TAGCCTGCCCAATGCAAATATTTATGATTGTTTGAACAATTATATATTTCAAATTGTTAT-AACC
64 TA--CTAAACAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAA-C
* ** * * * *
21164922 TTTTGTGCTATCACAAATCAATTGTTTCTATTCATACAAGTTTATTTGAAATA
126 TTTTATTTTGTCATAAAACAATTGTTTTTA-TCATACAA-TTTATTTGAAATA
* * ** * * *
21164975 ACATAATTCTAGCTTATTAATATTCAAAAAATTAATAAGTAAGA-ATTTAAAAAAAATGAATCTG
1 AAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAAGAGATTT--TAAAAATAAATTTG
* * * * * * * *
21165039 TTTACTGAACAAGTTAAAATGGTTATGAC-ATTTGAAGAGTTATTTATTTCAAATCGCTAT-ATC
63 -TTACTAAACAA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAAC
* * * * *
21165102 TTTTTATTTTGTTATAAAACAATT-TTTCTATTCATGCAAGCTTATTTCAAATA
126 -TTTTATTTTGTCATAAAACAATTGTTTTTA-TCATACAA-TTTATTTGAAATA
* * * * *
21165155 AAATAAT-CAAAATTTATTAATATTCAAACAATTAAAAAATAAAAGATTTAAAAAATAAA-TTGT
1 AAATAATAC-TAATTTATTAATATTCAAA-AATTAATAAGTAAGAGATTTTAAAAATAAATTTG-
* * * *
21165218 TTATCGAAA-AAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTTAAATCGTTATG-GC
63 TTA-CTAAACAA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAAC
* * * * * *
21165281 TTTTTATTTTTTCAT-AAACAATTATTTTTGTTCACACAAGCTTTA-TTCAGATTA
126 -TTTTATTTTGTCATAAAACAATTGTTTTT-ATCATACAA--TTTATTTGA-AATA
* * * * *
21165335 AAATAATATTAATTTATTAATACTTTGACAAA-TAATAAGTAAGAATATTTTTAAAATAAATATG
1 AAATAATACTAATTTATTAATA--TTCAAAAATTAATAAGTAAG-AGATTTTAAAAATAAAT-T-
* * * * * *
21165399 TTTTACTGATAA-AAGTCCAAATAGTCATAACTATTTGAATAATTATCTATTTCAAGTCGTTATG
61 TGTTACT-A-AACAA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATG
* * ** * ***
21165463 ACCTTTT-GTTTGATTTTAAAATAATTGTATTAGTTCAT-ATAGGCTTT-TTTGAAATA
123 AACTTTTATTTTG-TCATAAAACAATTGT-TT--TT-ATCATACAATTTATTTGAAATA
* * * * *
21165519 AAATAATACTAATTTATTAATATTCCTAAAATTAATGAGTAAGAGATTTAAAAAATGAATCTGTT
1 AAATAATACTAATTTATTAATATT-CAAAAATTAATAAGTAAGAGATTTTAAAAATAAATTTG-T
* * * * * * *
21165584 TACCAAACATGTTTAAATAGTCATTACTATTTGAACAATTATCTATTTCAAATCGTTTTGACCTT
64 TACTAAACA-ATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAACTT
*
21165649 TTATTTTGTCATAAAACAATTGTTTCTGT-TCATACAAACTTATTTTG-AATA
128 TTATTTTGTCATAAAACAATTGTTT-T-TATCATAC-AATTTA-TTTGAAATA
* * *
21165700 GAATAATA-TAAATTTATTAATATTTCAAAAATTAATAAGT-AGAAATTTTAAAAATAGATCTAT
1 AAATAATACT-AATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTTTAAAAATAAAT-T-T
* * * * * *
21165763 -TTTCTGAACACATTCAAATAGTTATAACTATTTGAACAATTATTTTATTTCAAATAGTTATGAC
62 GTTACTAAACA-ATTCAAATAGTTATGACTATTTGAACAATTA-TCTATTTCAAATCGTTATGAA
* * * *
21165827 CTTTTGTTTTGTCATAAACCAATTGTTTCTATTCATACAAGCTTATTTGAAATA
125 CTTTTATTTTGTCATAAAACAATTGTTTTTA-TCATACAA-TTTATTTGAAATA
* * * * *
21165881 AAATAACACTAATTTATTAGTATTCCAAAAATTATTAAGTAAAAGATTTAAAAAATAAATCTAT-
1 AAATAATACTAATTTATTAATATT-CAAAAATTAATAAGTAAGAGATTTTAAAAATAAAT-T-TG
* * * * * * * *
21165945 TTA-TGAGCAAGCTCAAATAGTTATGACTGTTTGAATAATTATTTATTTCGAATAGTTATG-A-T
63 TTACTAAACAA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAACT
* * * *
21166007 ATTT-TTTTATCATAAAATAATTGTTTCTATTCATACAAGTTTATTCG-AA-A
127 -TTTATTTTGTCATAAAACAATTGTTTTTA-TCATACAA-TTTATTTGAAATA
* * ** *
21166057 AAATAATACTAA-TT-TTAATATTCTAAAATTAAT-GGTTGGAGA-TTTAAAAAAAAATTAT-TT
1 AAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAAGAGATTTTAAAAATAAATT-TGTT
* * * * *
21166117 ACCAAACAAATTCAAATAGTCATGTCTATTTGAATAATTATCTATTTCAAAT-TTTATG-ACTTT
65 ACTAAAC-AATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAACTTT
*
21166180 TATTTTGTCATAAAACAATTGTTTCTGT-TCATACAAAATTATTT-AGAATA
129 TATTTTGTCATAAAACAATTGTTT-T-TATCATAC-AATTTATTTGA-AATA
* * * * *
21166230 AAATAATATTGATTTACTAATATTTTAAAAATTAAT---T-AGAGA-TTTAAAAACTAAATCTGT
1 AAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTTTAAAAA-TAAATTTG-
* * * ** *
21166290 TTACTGAATCAGTTCAAATAGTTATGACTACTTGAACAATTATCTAGCTCAAATCGTTATGATC-
63 TTACT-AAACAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAACT
* * * *
21166354 TTTATTTTGTCATAAAACAATTGTTTCTTTTCATACAAGCTTA-TTCAGATTA
127 TTTATTTTGTCATAAAACAATTGTTT-TTATCATACAA-TTTATTTGA-AATA
* *
21166406 AGATAATACTAATTTAATAATA
1 AAATAATACTAATTTATTAATA
21166428 AAAATAAATG
Statistics
Matches: 1971, Mismatches: 406, Indels: 301
0.74 0.15 0.11
Matches are distributed among these distances:
170 15 0.01
171 81 0.04
172 11 0.01
173 46 0.02
174 44 0.02
175 105 0.05
176 134 0.07
177 68 0.03
178 209 0.11
179 210 0.11
180 291 0.15
181 531 0.27
182 80 0.04
183 36 0.02
184 88 0.04
185 15 0.01
186 2 0.00
187 2 0.00
188 3 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (176 bp):
AAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAAGAGATTTTAAAAATAAATTTGTTA
CTAAACAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAACTTTTA
TTTTGTCATAAAACAATTGTTTTTATCATACAATTTATTTGAAATA
Found at i:21166572 original size:149 final size:151
Alignment explanation
Indices: 21166296--21166573 Score: 365
Period size: 146 Copynumber: 1.9 Consensus size: 151
21166286 CTGTTTACTG
* *
21166296 AATCAGTTCAAATAGTTATGACTACTTGAACAATTATCTAGCTCAAATCGTTATGATCTTTATTT
1 AATCAGTTCAAATAGTTAAGACTACTTGAACAATTATCTAGCTCAAATCATTATGATCTTTATTT
* * * *
21166361 TGTCATAAAACAATTGTTTCTTTTCATACAAGCTTATTCAGATTAAGATAATACTAATTTAATAA
66 TGTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAGAATAAAATAATACTAATTTAATAA
21166426 TAAAAATAAATGTGTTTTGCC
131 TAAAAATAAATGTGTTTTGCC
* ** *
21166447 AATCAGTTCAAATAGTTAAGATTA-TT-AACAATTATCTATTTCAAATCATTCTGA-CTTT-TGT
1 AATCAGTTCAAATAGTTAAGACTACTTGAACAATTATCTAGCTCAAATCATTATGATCTTTAT-T
* *
21166508 TTAGTCAT-AAA-AATTATTTC-ATTCATACAAGCTTATT-TGAAATAAAATAATACTAATTTAT
65 TT-GTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAG-AATAAAATAATACTAATTTAA
21166569 TAATA
128 TAATA
21166574 TTCAAAAAAT
Statistics
Matches: 112, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
145 1 0.01
146 39 0.35
147 9 0.08
148 10 0.09
149 29 0.26
150 2 0.02
151 22 0.20
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (151 bp):
AATCAGTTCAAATAGTTAAGACTACTTGAACAATTATCTAGCTCAAATCATTATGATCTTTATTT
TGTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAGAATAAAATAATACTAATTTAATAA
TAAAAATAAATGTGTTTTGCC
Found at i:21166754 original size:181 final size:180
Alignment explanation
Indices: 21166451--21167317 Score: 759
Period size: 181 Copynumber: 5.0 Consensus size: 180
21166441 TTTGCCAATC
* * * *
21166451 AGTTCAAATAGTTAAGATTA-TT-AACAATTATCTATTTCAAATCATTCTGA-CTTTTGTTTAGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* *
21166513 CAT-AAA-AATTATTTCA-TTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATAT
66 CATAAAACAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATAT
* * *
21166575 TCAAAAAATTAATAAGCAAGAGATTTAAAAAAATTAATATGTTTA-CTAACA
131 TC-AAAAATTAATAAGTAAGAGATTT-AAAAAATAAATCTGTTTACCTAACA
* *
21166626 AGTTCAAATAGATATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * ** *
21166691 CATAAAACAATTATTTCAGTTCATAAAAATTTATCCGAAATAAAATAATACT-ATTTCATTAATA
66 CATAAAACAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTT-ATTAATA
* * * * * *
21166755 TTTCAAAAATTATTAAGCAAGAGATTTAAAAACTAAAGCTATTT---T--CT
130 -TTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCTAACA
* * * * *
21166802 AGTTCAAATAG---T---TATTTGAACAAATAT-T-TCTCAAATTACTATGATC-TTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * *
21166858 TATAAAA-AATT-TCTT-A--TCATACAAGCTTATTC-AGATTAAAATAATACTAATTTAATAAT
66 CATAAAACAATTGT-TTCAGTTCATACAAGCTTATTCGA-AATAAAATAATACTAATTTATTAAT
* * * *
21166917 ATTTCAAAAATTAATAAGTAAGAGATTTAAAAACTAAATGTGTTT-GCGAATC-
129 A-TTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCTAA-CA
* * * * * * * *
21166969 ATTTC-AACAGTTAAGACTATTAGAATAATTATCTATTTCAAATCATTTTAACCTTTTG-TTAGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * *
21167032 CATAAAATAATTGTTTTAGTTCATACAAGTTTATTC-AGAATAAAATAATACTAATTTATTAACA
66 CATAAAACAATTGTTTCAGTTCATACAAGCTTATTCGA-AATAAAATAATACTAATTTATTAATA
* * *
21167096 TTCAAAAAATTAATAAGCAA-AGATTTGAAAAAATAAATATGTTTACCGAACA
130 TTC-AAAAATTAATAAGTAAGAGATTT-AAAAAATAAATCTGTTTACCTAACA
* * * * ** ** * *
21167148 AGCTCAAATAGTTATTATTATTTGAA-AATTTATCCATTGAAAATTGTTATGAACTTTTTTTTTG
1 AGTTCAAATAGTTATGACTATTTGAACAA-TTATCTATTTCAAATCATTATGACCTTTTGTTTTG
* * * * *
21167212 TCATAAAACAATTGTTTCAATTCATAAAAGCTTATCCAAAATAAAATAATACTACTTTATTAATA
65 TCATAAAACAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA
*
21167277 TTTCAAAAA-T--TAA-TAAGAGATTTAAAAAATAAATCAGTTTA
130 -TTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTA
21167318 TCGAATCAAT
Statistics
Matches: 565, Mismatches: 87, Indels: 78
0.77 0.12 0.11
Matches are distributed among these distances:
162 1 0.00
163 70 0.12
164 4 0.01
165 2 0.00
166 10 0.02
167 20 0.04
168 14 0.02
169 1 0.00
170 14 0.02
172 12 0.02
173 2 0.00
174 22 0.04
175 27 0.05
176 16 0.03
177 53 0.09
178 95 0.17
179 12 0.02
180 63 0.11
181 120 0.21
182 7 0.01
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (180 bp):
AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
CATAAAACAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATAT
TCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCTAACA
Found at i:21167752 original size:177 final size:178
Alignment explanation
Indices: 21167326--21176600 Score: 4135
Period size: 181 Copynumber: 52.0 Consensus size: 178
21167316 TATCGAATCA
* * * * **
21167326 ATTTAAATAATTATATATTTCAAATCATTATTACCTTTTGTCTTATCATAAAACAATTCTTTTTC
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTT-T-TTATCATAAAACAATTGTTTTAG
** * *
21167391 AACATACAAGCTTATTT-GAAATAAAATAATACTAACTTATTAATATT-TCAAGAA-T--T-AGT
64 TTCATACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAAGT
** ** * **
21167450 AAGAGATTT-AAAAATAAATTTATTTA-TCGAAATAATTTAAATAGTTGTGACT
127 AAGAGATTTAAAAAATAAA-TCGTTTACT-GAACCAATTCAAATAGTTAAGACT
* ** * *
21167502 ATTTGAATAGTTATCTATTTCAAATTGTTATAACCTTTTTTCTATCATAAAATAATTATTTCT-G
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTTT-TATCATAAAACAATTGTTT-TAG
* * * *
21167566 TTCATACAAGTTTATTTAGAATAAAATAATACTAATTTACTAATATTCTAAAAATTCATAACTAA
64 TTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAA
* *
21167631 GAGATTTAAAAAATAAATCGTTTGCTGAACCAATTC-AACAGTTAAGACT
129 GAGATTTAAAAAATAAATCGTTTACTGAACCAATTCAAATAGTTAAGACT
* * * * *
21167680 ATTTGAATAGTTATCTATTTCAAATCGTTATAACCTTTTTCTATCATAAAACAATTATTTTAACT
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTTTTATCATAAAACAATTGTTTT-AGT
* * * * *
21167745 T-ATACAAGTTTATTT-GAAATAAAATAAAACTAATTTGTTAATATT-TCAAAATTTTATAAGTA
65 TCATACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAAGTA
* * ** * *
21167807 AGAGATTTAAAAAATAATTCTATTTACCAAATCAGTTCAAATAATTATAATAATTATA-ACT
128 AGAGATTTAAAAAATAAATC-GTTTACTGAA-C----C-AAT--TCA-AATAGTTA-AGACT
* * * * * *
21167868 ATTTGAACAATTATTTATTTCAAATCATTATTACTTTTGTTTTGTCATAAAA-AATTGTTTTTGT
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTT-TTTTATCATAAAACAATTGTTTTAGT
* * * * * *
21167932 TCATATAAGTTTGTTCAAAATAAAATAATACTAATTTATTAATATT-TAGAAAATTAATCAGTAA
65 TCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTA-AAAATTAATAAGTAA
** * * **
21167996 GAGA--TAAAAAATAAATCGTTTACCAAACCATTTCATATAGTTTTGACT
129 GAGATTTAAAAAATAAATCGTTTACTGAACCAATTCAAATAGTTAAGACT
* * * * *
21168044 ATATGAATAATTATCTATTTCAAATCATTATAACTTTTTGTTTGTCAT-CAA-AATTGGTTCT-G
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTT-TTTATCATAAAACAATT-GTTTTAG
* * ** * * * * * **
21168106 TTTATACTATTTTATTTGGAATAAAATAATACTAATTTAATAATATTTTGAAACTTAATAACCAA
64 TTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAA
* * * * * * *
21168171 GAAAATTAAAAGATAAGTC-TAATTGCTGAACGAGTTCAAATAGTTAAGACT
129 GAGATTTAAAAAATAAATCGT--TTACTGAACCAATTCAAATAGTTAAGACT
** * * *
21168222 ACATGAATGATTATCTATTTCAAATCATTATGACCATTTGTTTTGTCATAAAACAATT-TTTTAG
1 ATTTGAATAATTATCTATTTCAAATCATTATAACC-TTT-TTTTATCATAAAACAATTGTTTTAG
* * * * * * *
21168286 TTCGTATAAGCTTATTTGGATTAAAATAATACAAATTTAATAATATTTTAAAAATTAATAAGTAA
64 TTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAA
* * * * * * * *
21168351 GAGATTTTAAAAA-AATTTGTTTA-TCGAACTAGTTTATAT-GATTAATACT
129 GAGATTTAAAAAATAAATCGTTTACT-GAACCAATTCAAATAG-TTAAGACT
* * * * * * * *
21168400 ATTAGAACAATTATCTATTTCAAATCGTTTTGACCTTTTGTTTAGTCATAAAGCAATTGTTTCAA
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTT-TTTA-TCATAAAACAATTGTTTTAG
* * * * * *
21168465 TTCATGCAAGCTTATTCAGAATAAATTAATACTAATTTATTAACATTC-AAAAATTAAGAAGAAA
64 TTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAA
* * *
21168529 GAGATTTAAGAAAATAAGTCTATTTA-TCGAA-CAAGCTCAAATAGTTATA-ACT
129 GAGATTTAA-AAAATAAATC-GTTTACT-GAACCAA-TTCAAATAGTTA-AGACT
* * * * * *
21168581 ATTTGAACAATTGTCTATTTAAAATCACTAT-ACCTTTTGTTTTTCATAAAACAATTG-TTTCGT
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTT-TTTATCATAAAACAATTGTTTTAGT
* ** * * * *
21168644 TAATATGAGTTTATAT-GATACAAAATTAATAC-AATTTATTAATATTTCT--AAATTAACAAGT
65 TCATACAAGCTTATTTAGA-ATAAAA-TAATACTAATTTATTAATA-TTCTAAAAATTAATAAGT
* ** * * * * *
21168705 AAGAGATTTTAAAAATAAATTTTTTA-TCAAATCAATT-AAATAATTATG-CA
127 AAGAGATTTAAAAAATAAATCGTTTACT-GAACCAATTCAAATAGTTAAGACT
* * * * * * *
21168755 ATTTGAATAATTATCTATTCCAATAGCA--ATAACCATTTGTTTTGTTATCAAACAATTATTTTT
1 ATTTGAATAATTATCTATTTCAA-ATCATTATAACC-TTT-TTTTATCATAAAACAATTGTTTTA
* *
21168818 TTATCATACAAGCTTA-TTCGAAATAAAATAATACTAATTTATTAATATT-TCAAAAATTAATAA
63 GT-TCATACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAA
* *
21168881 GTAAGAGATTTAAAAAATAAATGTGTTTA-TCGAACCAATTCAAATAGTTACA-ATT
125 GTAAGAGATTTAAAAAATAAAT-CGTTTACT-GAACCAATTCAAATAGTTA-AGACT
** * * *
21168936 ATAAGAATAATTATCTATTTCAAATCATTCTAACCTATTTTTAGTCATAAAA-AATTTGTTTCA-
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTTTTA-TCATAAAACAA-TTGTTTTAG
* * * * * * *
21168999 TATCATACAATCTTATTCAGAATAAAATAATCCTAATATATTAACATTCAAAAAATTAATAAGCA
64 T-TCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTA
* * * * * *
21169064 AGAGATTTGAAAAATAAATCTATTTACCGAA-TAAGCTCAAATAGTTATGACT
128 AGAGATTTAAAAAATAAATC-GTTTACTGAACCAA-TTCAAATAGTTAAGACT
* * * * * * *
21169116 ATTTAAATCAATTAAT-TATTTAAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGCTTC
1 ATTTGAAT-AATT-ATCTATTTCAAATCATTATAAC-CTTT-TTTTATCATAAAACAATTGTTTT
* * * ** * * * **
21169180 AATTCATAAAAGGTTATCCAAAATAAAATAATACTAATTTTTTAATATTTTAAAAATTAATAACC
62 AGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGT
* ** * *
21169245 AAGAGATTTAAAAAAATAAATGCATTTTTTGAACAAATTCAAATAGTTACGACT
127 AAGAGATTT-AAAAAATAAAT-CGTTTACTGAACCAATTCAAATAGTTAAGACT
* * * * * * *
21169299 ATTTGAACAATTGTATATTTAAAATCATTATGATA-TTTTGTTTTATCATAAAAAAATTGTTTCA
1 ATTTGAATAATTATCTATTTCAAATCATTAT-A-ACCTTT-TTTTATCATAAAACAATTGTTTTA
* * *
21169363 TTTCATTA-AAGCTTATTT-GAAATAAAATAATAATAATTTATTAATATTCCAAAAATTAATAAG
63 GTTCA-TACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAG
* * * ** * * * *
21169426 T----GATTTAAAAAGTGAATTTGTTTACCAAATCAATTCAAATAATTATGGCT
126 TAAGAGATTTAAAAAAT-AAATCGTTTACTGAACCAATTCAAATAGTTAAGACT
* * * * * * * * ***
21169476 ATTTCAACAATTATGTGTTTCAAATCGTTATGAACATTGTTTTGTCATAAAACAATTGTTTTTCA
1 ATTTGAATAATTATCTATTTCAAATCATTAT-AACCTTTTTTTATCATAAAACAATTGTTTTAGT
* * *
21169541 TCATACAAGCTTGTTTGGAATAAAATAATACTAATTTATTAATATT-TCAAAAATTAATGAGTAA
65 TCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAAGTAA
* * **
21169605 GAGATTTAAAAAATAAATTTGTTTA-T----C-A---AAGTA-TT--TCCT
129 GAGATTTAAAAAATAAA-TCGTTTACTGAACCAATTCAAATAGTTAAGACT
* *
21169644 ATTTGAATAATTACCTATTTCAAATCATTATAACCTTTTCTTCTATTATAAATA-AA-TGTTTTA
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTT-TT-TATCATAAA-ACAATTGTTTTA
* * * * * * * *
21169707 GTTCATACAAGCTTATTCAAAATAAAATAATAATATTTTAATAATATTATGAAAATTAATAACTA
63 GTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTA
* ** * * *
21169772 AGGGATTTAAAAAATAAATCCGTTTGTTGAAGCAGTTTAAATAGTTAAGACT
128 AGAGATTTAAAAAATAAAT-CGTTTACTGAACCAATTCAAATAGTTAAGACT
* * ** **
21169824 ATATGAACAATTATCTATTTCAAATTGTTATGAAATTTTGTTTTATCATAAAACAATTGTTTTAG
1 ATTTGAATAATTATCTATTTCAAATCATTAT-AACCTTT-TTTTATCATAAAACAATTGTTTTAG
* ** *
21169889 TTCATAAAAGCTTATTT-GAAATAAAATAATAAAAATTTATTAATATTCCAAAAATTAATAAGT-
64 TTCATACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTA
* * * * * * * *
21169952 ---GATTTAAAAAGTGAATCTGTTTACTGAATCATTTCAAATAATTATGGCC
128 AGAGATTTAAAAAATAAATC-GTTTACTGAACCAATTCAAATAGTTAAGACT
* * * * * * * ** * * *
21170001 ATTTCAACATTTATCTATTTCAAATCATTATTACCATTTGTATGTCATATGACAAATGTTTTTGA
1 ATTTGAATAATTATCTATTTCAAATCATTATAACC-TTTTTTTATCATAAAACAATTGTTTTAGT
* * * * * *
21170066 TCATTCAAGCTTATTCAGAATACAATAATACTAATTTATTAATCTTTTAAAAATTAATAAG---C
65 TCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAG
* * * * *
21170128 A-ATTTAAAAAATAAATCTGTTTATTAAACTAGTTCAAATAATTATA-ACT
130 AGATTTAAAAAATAAATC-GTTTACTGAACCAATTCAAATAGTTA-AGACT
* * * * ** * * * *
21170177 ATTTGAACAATTGTATACTTCAAATTTTTATAACCATTTGTTCTATCACAAAATAATTATTTCT-
1 ATTTGAATAATTATCTATTTCAAATCATTATAACC-TTT-TTTTATCATAAAACAATTGTTT-TA
* * * * * * *
21170241 GTTCATATAAGCTTATTTGGAATAAAATAATACTAATATAATAATATTATGAAAATTAATAACTA
63 GTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTA
* * * ** * *
21170306 AGAGAATT-AAAAATAAATTTGTTTGAC-CAATTAGTTCAAATATTTAAGACT
128 AGAGATTTAAAAAATAAA-TCGTTT-ACTGAACCAATTCAAATAGTTAAGACT
* * * * * **
21170357 ATATGAACAATTATCTATTTCAAAAT-GTTATGACCTTTTGCTTTGTCATAAAACAA-AATTTTA
1 ATTTGAATAATTATCTATTTC-AAATCATTATAACCTTTT--TTTATCATAAAACAATTGTTTTA
* * ** * * *
21170420 ATTCATACTAGCGGA-TTCGAAAAAAAATAA-AATGAATTTATTAATATT-TCAAAAATTAATAA
63 GTTCATACAAGCTTATTTAG-AATAAAATAATACT-AATTTATTAATATTCT-AAAAATTAATAA
* * * * *
21170482 GTAAGATATTTAAAAAAATATATTTTTGTTTACCT-AACCAATTCAAATAATTATGACT
125 GTAAGAGATTT-AAAAAATA-A--ATCGTTTA-CTGAACCAATTCAAATAGTTAAGACT
* * * * * * * *
21170540 ATTTAAACAATTATCTATTCCGAGTCATTATAACCTTTTGTTTTGTCATAAAACAAATGTTTTTG
1 ATTTGAATAATTATCTATTTCAAATCATTATAACC-TTT-TTTTATCATAAAACAATTGTTTTAG
* * * * *
21170605 TTCATATAAGTTTGTTT-GAAATAAAGTAATACTAATCTATTAATATT-TCAAAAA-T--TAA-T
64 TTCATACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAAGT
* * * **
21170664 AAGAGATTTAAAAAATTAATC-TATTA-TCAAACCAGTTCAAATAGTTATCACT
127 AAGAGATTTAAAAAATAAATCGT-TTACT-GAACCAATTCAAATAGTTAAGACT
* * ** * * * *
21170716 ATTTGGCA-AATTATTTATTTCAAATTTTTTTGA-CTTTTTGTCCTATTATAAAACATTTGTTTC
1 ATTT-GAATAATTATCTATTTCAAATCATTATAACCTTTTT-T--TATCATAAAACAATTGTTT-
** * * * * * * * *
21170779 TA-TTTGTACATGCTTATTCATATTAAAATAATACTAATTTAGTAATATTTTGACAATTAATAAG
61 TAGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAG
* * ** ** * * * * * *
21170843 TAA-AAATTTTTAAAAATAAATATATTTACCAAACTAGTCCAAATAGTCATGATT
126 TAAGAGA-TTTAAAAAATAAAT-CGTTTACTGAACCAATTCAAATAGTTAAGACT
* * * * * **
21170897 ATTTGAATAATTATCTATTTCAAATTATTATGACCCTTTCTTTTGTCATAAAAGATTTGTTTCGG
1 ATTTGAATAATTATCTATTTCAAATCATTAT-AACCTTT-TTTTATCATAAAACAATTGTTTTAG
* * * * *
21170962 TTCATATAAGTTTA-TTCGAAATAAAATAATA-TCAATTTATTAATATTCCAAAAATTAATAATT
64 TTCATACAAGCTTATTTAG-AATAAAATAATACT-AATTTATTAATATTCTAAAAATTAATAAGT
* ** * * *
21171025 AAGAGATTTAAAAAA-AGAATCTATTTACT-AAATAAGTTTAAATAATTATGACT
127 AAGAGATTTAAAAAATA-AATC-GTTTACTGAACCAA-TTCAAATAGTTAAGACT
* * ** * * *
21171078 GTTTGAATAATTATCTATTTGAAATTCGCTATAACATTTTGTTT-TGACATAAAATAATTTTTTT
1 ATTTGAATAATTATCTATTTCAAA-TCATTATAACCTTTT-TTTAT--CATAAAACAATTGTTTT
* * * * *
21171142 TGTTC--A-AA-C-TATTTTGAATAAAATAATACAAAATTAGTAATA--CTAAGAAAATTAATAA
62 AGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCT-A-AAAATTAATAA
* * *
21171200 GTAAAAGATTTAAAAAATAAATTTGTTTA-TCGAA-CAAGTTCAAAT-GTTATGACT
125 GTAAGAGATTTAAAAAATAAA-TCGTTTACT-GAACCAA-TTCAAATAGTTAAGACT
* * * ** * ** *
21171254 ATTTGAACAATTATTTATTTCGAATTGTTATGACTCTTTGTTTCGTCATAAAACAATTATTTCT-
1 ATTTGAATAATTATCTATTTCAAATCATTATAAC-CTTT-TTTTATCATAAAACAATTGTTT-TA
** * * * * * * *
21171318 GTTCATACAAGAC-TATTCGGATTAAAAGAATATTAA-TTATTAATATTTTGACAGTTAATAAGT
63 GTTCATACAAG-CTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGT
* * * * * * *
21171381 AAAATATTTAAAAAAATAAATATGTTTACCGAA-CAAGTTGAAATAGTCATGACT
127 AAGAGATTT-AAAAAATAAAT-CGTTTACTGAACCAA-TTCAAATAGTTAAGACT
* * * * * *
21171435 ATTTGAATAATTAACTATTTCAAATCATTATAACCTTCTGTTTTGTAATAATACAACTGTTTTAA
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTT-T-TTTTATCATAAAACAATTGTTTTAG
* * *
21171500 TTCAAATAAGCTTATTT-GAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATGAGTA
64 TTCATACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTA
* * * * *
21171564 AGAGACTTAAAAAATAAATCTGTTTACCGAA-CAAGCTCAAATTGTTATGACT
128 AGAGATTTAAAAAATAAATC-GTTTACTGAACCAA-TTCAAATAGTTAAGACT
* * * * * *
21171616 ATCTGAATAATTATCTATTTCAAAACATCATGACTTTTTTTTTAATCATAAAACAATTGGTTCTA
1 ATTTGAATAATTATCTATTTCAAATCATTATAAC-CTTTTTTT-ATCATAAAACAATT-GTTTTA
* * * *
21171681 -TTCAT-TAAGCTTATTTCGAATAAAATAATA-TAAACTGATTAATATTAC-AAAAATTAATAAG
63 GTTCATACAAGCTTATTTAGAATAAAATAATACT-AATTTATTAATATT-CTAAAAATTAATAAG
* * * * *
21171742 TAA-AAATTTAAAAAATAAATCTGTTTTCT-AAACACGTTCAAATAGTTATA-TCT
126 TAAGAGATTTAAAAAATAAATC-GTTTACTGAACCA-ATTCAAATAGTTA-AGACT
* ** * * * **
21171795 ATTTGAACAATTATGC-ATTTCAAATTGTTATGATCTTTTGTTTTTGTTAATAA-AATCT-TATT
1 ATTTGAATAATTAT-CTATTTCAAATCATTATAACCTTTT-TTTATCATAA-AACAAT-TGT-TT
* * * * * * * ** ** *
21171857 CAGTATAAAATAATACTAATTT--ATTAAAAT--TAC-AA-AAATTAATA-AGTAAAAGATT-TT
61 TAGT-TCATACAA-GCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAA-ATTAAT
* * *** * *
21171914 AA--AA-A-A--T--AAAAT--CT-ATTTACTGAGTGAGTTCAAATAGTTATGACT
123 AAGTAAGAGATTTAAAAAATAAATCGTTTACTGAACCAATTCAAATAGTTAAGACT
* * ** * * * * *
21171959 ATTTGAAAAATTATTTATTTCAAATTGTTATGATCTTTTGTCTTCTCATAAAATAATTATTTCTA
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTT-T-TTATCATAAAACAATTGTTT-TA
* * * * *
21172024 CTT-ATACAAGTTTA-TTCGAAATAAAATAATATTAATCTATTAATATTCTAAAAATTAATAAGT
63 GTTCATACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGT
* * * *
21172087 TAGAGATTT-AAAAATAAATC-TATTCACT-AAACAAGTTCAAATAGTCAAGTCT
127 AAGAGATTTAAAAAATAAATCGT-TT-ACTGAACCAA-TTCAAATAGTTAAGACT
** * * * * * * *
21172139 ATTCAAACT-ATTAACTATTTCAAATCGTTATGACATTTTGTTTTGTCGTAAAATAATTGTTTTT
1 ATTTGAA-TAATTATCTATTTCAAATCATTATAAC-CTTT-TTTTATCATAAAACAATTG-TTTT
* ** * * * *
21172203 A-TTCAAACAAAATTATTCAAAATAAAATAATACTAATTTATTAATATTTTGAAAA-T-A-AA-T
62 AGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGT
** * * ** * *
21172263 AAGAGATTTAAAACCTAAATCAATTTATTGAATTAGTTCAAATAGTTATGACT
127 AAGAGATTTAAAAAATAAATC-GTTTACTGAACCAATTCAAATAGTTAAGACT
* * ** * * * **
21172316 ATTTGAACT-ATTATCTATCTAAAATTGTTATGATCTTTTTTTCTCATAAAGTAATTGTTTTTA-
1 ATTTGAA-TAATTATCTATTTCAAATCATTATAACCTTTTTTTATCATAAAACAATTG-TTTTAG
* * * * * *
21172379 TTCATACAAGTTTATTCAGAGTAAAATATTGCTGAA-TTAATAATATTCTAAAAATTAATAAGTA
64 TTCATACAAGCTTATTTAGAATAAAATAATACT-AATTTATTAATATTCTAAAAATTAATAAGTA
* * * ** * *
21172443 AGAGATGTAAAACATAAATGTGTTTGTTGAACTAGTTCAAATAGTTAAGACT
128 AGAGATTTAAAAAATAAAT-CGTTTACTGAACCAATTCAAATAGTTAAGACT
* * * * * * * *
21172495 AGTAGAACAATTAT-TTTTGTC--ATCA-AATAA--TTGGTTCTATTCAT---ACTATT-TTATT
1 ATTTGAATAATTATCTATT-TCAAATCATTATAACCTT-TTTTTA-TCATAAAACAATTGTT-TT
* * * * ** * * * * ** *
21172550 CAG--AATA-AA----A-TAATACTAATTTAATAAT-ATTT-TGAA-ACT-TAATAACCAAGAA-
62 -AGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAG
* * * * *
21172602 -AATTA-A-----AAAATAAATCTAAGTGT--TGAACTAGTTCCAATAGTTAAGACT
126 TAA-GAGATTTAAAAAATAAATC---GTTTACTGAACCAATTCAAATAGTTAAGACT
* * * * *
21172650 ATATGAATGATTATCTATTTCAAA-CTGTTATAACATTTTGCTTTGTCATAAAACAATTGTTTT-
1 ATTTGAATAATTATCTATTTCAAATC-ATTATAACCTTTT--TTTATCATAAAACAATTGTTTTA
* * * * * * * * *
21172713 GTTCGTACAAGTTTATTTGGATTTAAATAATACTAATTCAATAATATTTTAAAAATTAATATGTA
63 GTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTA
* * *
21172778 AGAGATTTAAAAAATAAATTTGTTTA-TCGAA-TAAGTTCAAATGGTTAAGACT
128 AGAGATTTAAAAAATAAA-TCGTTTACT-GAACCAA-TTCAAATAGTTAAGACT
* * ** * * *
21172830 ATTTGAATAATTATCTATTTCAAATCGTTTTGGCCTTTTGTTTGGTTATAAAACAATTGTTTCAG
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTT-TTT-ATCATAAAACAATTGTTTTAG
* * * * * * * *
21172895 CTCATACAAGCTTATTCAAAACAAATTAATACTAATTTATTAACATTCAAAAAATTAATTACA-A
64 TTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAA-TA-AGT
* * * *
21172959 AAGGAGATTTTAAAAAATAAATCTATTTAC-CAAACAAGTTCAAATAGTTATTG-CT
127 AA-GAGA-TTTAAAAAATAAATC-GTTTACTGAACCAA-TTCAAATAGTTA-AGACT
** * * * ** * * * *
21173014 ATTTGAGCAATTGTTTATTTAAAATTGTTATAACCATTTGGTTTGTCATAAAATAATTATTTTAG
1 ATTTGAATAATTATCTATTTCAAATCATTATAACC-TTT-TTTTATCATAAAACAATTGTTTTAG
***
21173079 TT-AGTACAAGCTTAGACAGAATAAAATAATACTAATTTATTAATATTTCT-AAAATTAATAAGT
64 TTCA-TACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATA-TTCTAAAAATTAATAAGT
* * * * ** * ** * * * *
21173142 AAAAAATTTTAAAAATAAATATGTTTACTGAATTAGTAAAAATAATTATGGCA
127 AAGAGATTTAAAAAATAAAT-CGTTTACTGAACCAATTCAAATAGTTAAGACT
* * * * *
21173195 ATTTGAATGATTATCTATTTGAAATCATTATGAGCTTTTTGTTTTGTCATAAAA-AATTGTTTT-
1 ATTTGAATAATTATCTATTTCAAATCATTAT-AAC-CTTT-TTTTATCATAAAACAATTGTTTTA
* * *
21173258 TTATCATACAAGCTTATTCAAAATAAAATAATAATAATAATAATTTATTAATATT-TGAAAAATT
63 GT-TCATACAAGCTTATT-----TAGAATAA-AATAATACTAATTTATTAATATTCT-AAAAATT
* * * * * * * *
21173322 AATTAGTAAGAGATTTAAAAAATAAATTTGTTTACCGAACTAGTTCAAATAGGTATGAAT
120 AATAAGTAAGAGATTTAAAAAATAAA-TCGTTTACTGAACCAATTCAAATAGTTAAGACT
* * * * ** * *
21173382 ATTTGAACAATT-TACGATCTCAAATCGTTA-AGATTTTTGTTTTGTCATTAAACAATTGTTTT-
1 ATTTGAATAATTAT-CTATTTCAAATCATTATA-ACCTTT-TTTTATCATAAAACAATTGTTTTA
* * * * ** * *
21173444 TTATCATAGAAGCTTA-CTCGGTTAAAAATAATACTAATTTAATAATATT-TCAAAAATTACTAA
63 GT-TCATACAAGCTTATTTAGAAT-AAAATAATACTAATTTATTAATATTCT-AAAAATTAATAA
* * * ** * * * *
21173507 ATAGGAGATTTAAAAAATAAAT-GTGCTT-GTGAAATTAGTTCAAATAATTAAAACC
125 GTAAGAGATTTAAAAAATAAATCGT--TTACTG-AACCAATTCAAATAGTTAAGACT
* * ** * * ** * * * * *
21173562 ATTAGAATAATTATCTATTTCAGATTGTTCTGATATTTTGTTTATTCAAAAAATATTTATTTCA-
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTT-TTTA-TCATAAAACAATTGTTTTAG
* * * * * * * *
21173626 TATCTTACAAGCTTATTTGGAATAAAATAATCCAAATTTAGTAACATT-TGGAAAATTAATAAGC
64 T-TCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAAGT
* * * * *
21173690 AAAAGATTTGAAAAAATAAATCTATTTACCGAA-CAAGTTCAAATAGTTATGATT
127 AAGAGATTT-AAAAAATAAATC-GTTTACTGAACCAA-TTCAAATAGTTAAGACT
* * * * * *
21173744 ATTTGAACAATTATTTATTTAAAATCATTATGACATTTTGTTT-TGACATAAAACAATTGTTTCA
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTT-TTTAT--CATAAAACAATTGTTTTA
* * * *** * * * * *
21173808 GTTGATAAAAGCATAACAAAAATAAAATAATAATAATTTCTTAATATTTTAAAAATTAATAAGCA
63 GTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTA
* * *
21173873 AGAG-TTTAAAAAAGTAAATTTGTTTACCGAACAAATTCAAATAGTTACA-ACT
128 AGAGATTTAAAAAA-TAAA-TCGTTTACTGAACCAATTCAAATAGTTA-AGACT
* * * * * * *
21173925 ATTTAAACAATTATTTATTTAAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGCTTTT-
1 ATTTGAATAATTATCTATTTCAAATCATTATAACC-TTT-TTTTATCATAAAACAATTG-TTTTA
* * * *
21173989 GTTCATACAAGTTTGTTT-GAAATAAAATAATACTAATTTATTAATAGTCCAAAAATTAATAAGT
63 GTTCATACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGT
* * ** ** * * * *
21174053 ----GATTTAAAAAGTGAATCTGTTTACCAAATTAGTTCAAATAATTATCG-CC
127 AAGAGATTTAAAAAATAAATC-GTTTACTGAACCAATTCAAATAGTTA-AGACT
* * * *
21174102 ATTTCAATAATTATCTATTTCAAATCATTGTTACCTTTTGTTTGATCATATAACAATTGTTTTA-
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTT-TTT-ATCATAAAACAATTGTTTTAG
* * * *
21174166 TATCATACTAGCATATTTGGAATAAAATAATACTAATTTCA-TAATCTT-TCAAAAATTAATAAG
64 T-TCATACAAGCTTATTTAGAATAAAATAATACTAATTT-ATTAATATTCT-AAAAATTAATAAG
* * *
21174229 TAAGAGATTTAAAAAA-AATTTGTTTACTGAACCAATTCAAATAGTTATGACT
126 TAAGAGATTTAAAAAATAAATCGTTTACTGAACCAATTCAAATAGTTAAGACT
* * * * * * *
21174281 ATTTGAAGAATTGTATACTTCAAATCAATTATTTACAAAATAAACATTTTGTTCTATTATAAAAT
1 ATTTGAATAATTATCTATTTCAAATC----A-TT-----AT-AACCTTTT-TT-TATCATAAAAC
* * * * * * * * *
21174346 AATT-ATTTATGTCCATACATGTTTATTCAAAATAAAAGAATACTAATCTAATAATATT-TAAAA
53 AATTGTTTTA-GTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCT-AAA
* ** * * * * * * *
21174409 AATTAATAACTAAGAGATTTAAAATTTAAATTTGTTT-GTCAAACTAGTTCAATTTGTTAAGACT
116 AATTAATAAGTAAGAGATTTAAAAAATAAA-TCGTTTACT-GAACCAATTCAAATAGTTAAGACT
* * ** ** * * *
21174473 ATATAAATAATTATCTATTTCAAATTGTTACGACATTTTGTCTTGTCATAAAACAATTTTTTTAG
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTT-T-TTATCATAAAACAATTGTTTTAG
* * *
21174538 TTCAAACTAGCTTATTT-GAAATAAAATAA-AATGAATTTA-TAGATATT-TCAAAAATTAATAA
64 TTCATACAAGCTTATTTAG-AATAAAATAATACT-AATTTATTA-ATATTCT-AAAAATTAATAA
* * * * * *
21174599 GTAAGAGATTTAAAAAATAATTCTATTTACCT-AACTAGTTCTAAT-GATTATGACT
125 GTAAGAGATTTAAAAAATAAATC-GTTTA-CTGAACCAATTCAAATAG-TTAAGACT
* ** * * *
21174654 ATTTGAATAATTTTCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAAAAAATGCTTTT-
1 ATTTGAATAATTATCTATTTCAAATCATTATAACC-TTT-TTTTATCATAAAACAATTG-TTTTA
* *
21174718 GTTCAT--AA---TA---A-AATAAACA-AAT-C-CA-TTAAT-AT-TTC-AAAAA-T--TAA-T
63 GTTCATACAAGCTTATTTAGAATAAA-ATAATACTAATTTATTAATATTCTAAAAATTAATAAGT
* * * * *
21174763 AAGAGATTTAAAAAATAAATCTTTTTA-TCAAACTAGTTCAAATAGTTATGACT
127 AAGAGATTTAAAAAATAAATC-GTTTACT-GAACCAATTCAAATAGTTAAGACT
* ** * * * * *
21174816 AATTGAGCAATTAAT-TATTTCAAATCATTCTGACTTTTTGTTCTATTATAAAACAATAGTTTCT
1 ATTTGAATAATT-ATCTATTTCAAATCATTATAACCTTTT-TT-TATCATAAAACAATTGTTT-T
** * * * *
21174880 A-TTCATACAAGCTTATTCGGATTAAAATAATATTAATTTATTATTATT-TCAATAATTAATAAG
62 AGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAAG
* ** * * *
21174943 TTAA-AAATTT-AAAAATAAATATTTTTACTGAACTAGA-TCAAATAGTCATGACT
126 -TAAGAGATTTAAAAAATAAAT-CGTTTACTGAACCA-ATTCAAATAGTTAAGACT
** * *
21174996 ATTTGAATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACAAATGCTTTT-
1 ATTTGAATAATTATCTATTTCAAATCATTATAACC-TTT-TTTTATCATAAAACAATTG-TTTTA
* * * * * * *
21175060 GTTCATATAAGTTTGTTCATAATAAAATAA-ACAAATCTATTAATATT-TCAAAAA-T--TAA-T
63 GTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAAGT
* * * * *
21175119 AAGAGATTTAAAAAATAAATCTTTTTA-TCAAACTAGTTCAAATAGTTATGACT
127 AAGAGATTTAAAAAATAAATC-GTTTACT-GAACCAATTCAAATAGTTAAGACT
** * * * * *
21175172 ATTTGAGCAATTAATC-ATTTCAAATTACTT-TGACTTTTTGTTCTATTATAAAACAATAGTTTC
1 ATTTGAATAATT-ATCTATTTCAAATCA-TTATAACCTTTT-TT-TATCATAAAACAATTGTTT-
** * * * *
21175235 TA-TTCATACAAGCTTATTCGGATTAAAATAATATTAATTTATTATTATT-TCAACAATTAATAA
61 TAGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAA
* * * * * *
21175298 GTTAA-AAATTTTAAAAATAAATATGTTTACTGAACTAGA-TCAAATAGTCATGACT
125 G-TAAGAGATTTAAAAAATAAAT-CGTTTACTGAACCA-ATTCAAATAGTTAAGACT
** * ** * * * * *
21175353 ATTTGAATAATTATCTATTTCAAATTGTTATGATTTTTTTTTGTCATAAAAAAATTATTTCAGGT
1 ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTTTTATCATAAAACAATTGTTTTAGTT
* * * * * * *
21175418 CATATAAGCTTA-TTCGAAATAAAATAATACCAAGTTGTTAATATTCCAAAAATTAATAATTAAG
66 CATACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAG
* * * * * *
21175482 AGATTTAAAAAATGAAA-CTATTTAC-AAAACAAGTTTAAATAATTATGACT
130 AGATTTAAAAAAT-AAATC-GTTTACTGAACCAA-TTCAAATAGTTAAGACT
* * * **
21175532 ATTT-AGACAATTATCTATTTAGAAATGC--TATAACCTTTTGTTTTGTCATAAAA-AGAGTTCA
1 ATTTGA-ATAATTATCTATTT-CAAAT-CATTATAACC-TTT-TTTTATCATAAAACA-A-TTGT
* * *
21175593 TCT-GTTCATACAAGCCTATTTCAG-ATAAAATAATACAAATTTATTAATA-T-TAAGACAATTA
59 TTTAGTTCATACAAGCTTATTT-AGAATAAAATAATACTAATTTATTAATATTCTAA-A-AATTA
* * * * * * * *
21175654 ATAATTAAAAGATTTAAAAAATAAATCCATTCAC--CACACAAGTTTAAATCGTTATGACT
121 ATAAGTAAGAGATTTAAAAAATAAAT-CGTTTACTGAAC-CAA-TTCAAATAGTTAAGACT
* * * * * * *
21175713 ATTTG-------AGC-A--ACAAATTATTATGACTTTTTTTTTTGTCATAAAACAATTATTTTTA
1 ATTTGAATAATTATCTATTTCAAATCATTATAAC--CTTTTTTTATCATAAAACAATT-GTTTTA
* * * * * * * *
21175768 -TTCATATAAGCTTATTCAGATTAAAATAATATTAATTTATTAATATTTTGACAATTAATTAGTA
63 GTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTA
* * * * *
21175832 AAAGATTTAGAAAATAAATATGTTTACTGAA-CAATTTCAAATAGTCATGACT
128 AGAGATTTAAAAAATAAAT-CGTTTACTGAACCAA-TTCAAATAGTTAAGACT
* * * * * * * * *
21175884 ATTTTAATAATTATCTATTTCAAATTATTGTGATCTTTTATTTTGTAATAAAACAATTGTTTCAA
1 ATTTGAATAATTATCTATTTCAAATCATTAT-AACCTTT-TTTTATCATAAAACAATTGTTTTAG
* * * * * *
21175949 TTAACATAAGCTTATTT-GAAGTAAAATAATACTAATTTATTAATATTCCAAAAATTAATGATTA
64 TTCATACAAGCTTATTTAGAA-TAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTA
** * * * **
21176013 AGAGAACTAGAAAAATAAATCTATTTACTGAA-TAAGTTCAAAGAGTTTTGACT
128 AGAGATTTA-AAAAATAAATC-GTTTACTGAACCAA-TTCAAATAGTTAAGACT
* * * * * * * *
21176066 ATCTGAACAATTATCTATTTCAAAACATTATGACCTTTTCTTTTGTCAGAAAACAAATGGTTCTA
1 ATTTGAATAATTATCTATTTCAAATCATTATAACC-TTT-TTTTATCATAAAAC-AATTGTTTTA
* * * * *
21176131 -TTCATCCAAGCTTATTTCGAATAAAATAATA-TAAATTAATTAATATTCCAAAAGTTAATAAG-
63 GTTCATACAAGCTTATTTAGAATAAAATAATACT-AATTTATTAATATTCTAAAAATTAATAAGT
* * * * * *
21176193 AAAAAATTTTAAAAATAAATTTGTTTACT-AAACACATTCAAATAGTTATGACT
127 AAGAGATTTAAAAAATAAA-TCGTTTACTGAACCA-ATTCAAATAGTTAAGACT
* * *
21176246 ATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGTCAT-AAACTAATTGTTTCT
1 ATTTGAATAATTATCTATTTCAAATCATTATAACC-TTT-TTTTATCATAAAAC-AATTGTTT-T
* * * * *
21176310 -GTTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAAAATTCCAAAAGTTAATAAGA
62 AGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGT
* * * * * *
21176374 AAAAGATTTAAAAAATAAATCTTTTTA-TAGAGCGAGTTCAAATAGTTATGACT
127 AAGAGATTTAAAAAATAAATC-GTTTACT-GAACCAATTCAAATAGTTAAGACT
* * ** * * *
21176427 ATTTGAATAATTATTTGTTTCAAATTGTTATGATCCATTGTTTTGTCATAAAACAATTGTTTCTA
1 ATTTGAATAATTATCTATTTCAAATCATTAT-AACC-TTTTTTTATCATAAAACAATTGTTT-TA
* * * *
21176492 -TTCATAAAAGTTTATTTAGAATAAAATAATATTAATTTATTAATATTCTAAAAATTAATAAGTT
63 GTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTA
* * *
21176556 AGAGATTTAAAAAATAAATTTGTTTATTGAA-CAAGTTTAAATAGT
128 AGAGATTTAAAAAATAAA-TCGTTTACTGAACCAA-TTCAAATAGT
21176601 CATTTCTATT
Statistics
Matches: 6984, Mismatches: 1526, Indels: 1173
0.72 0.16 0.12
Matches are distributed among these distances:
155 43 0.01
156 4 0.00
157 4 0.00
158 4 0.00
159 1 0.00
160 11 0.00
161 14 0.00
162 98 0.01
163 20 0.00
164 80 0.01
165 17 0.00
166 18 0.00
167 14 0.00
168 125 0.02
169 32 0.00
170 18 0.00
171 129 0.02
172 22 0.00
173 27 0.00
174 43 0.01
175 275 0.04
176 613 0.09
177 618 0.09
178 359 0.05
179 559 0.08
180 1043 0.15
181 1446 0.21
182 582 0.08
183 150 0.02
184 178 0.03
185 43 0.01
186 46 0.01
187 98 0.01
188 104 0.01
189 18 0.00
190 80 0.01
191 5 0.00
192 43 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (178 bp):
ATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTTTTATCATAAAACAATTGTTTTAGTT
CATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGA
GATTTAAAAAATAAATCGTTTACTGAACCAATTCAAATAGTTAAGACT
Found at i:21169546 original size:540 final size:536
Alignment explanation
Indices: 21167334--21176628 Score: 3869
Period size: 540 Copynumber: 17.4 Consensus size: 536
21167324 CAATTTAAAT
* * * * * * *
21167334 AATTATATATTTCAAATCATTATTACCTTTTGTCTTATCATAAAACAATTCTTTTTCAACATACA
1 AATTATCTATTTCAAATCATTA-TAACTATTGTTTTGTCATAAAACAATTGTTTTTCATCATACA
* * *
21167399 AGCTTATT-TGAAATAAAATAATACTAACTTATTAATATTTCAAGAA-T--T-AGTAAGAGATTT
65 AGCTTATTCAG-AATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTT
* * * * *
21167459 -AAAAATAAATTTATTTATCGAA-ATAATTTAAATAGTTGTGACTATTTGAAT-AGTTATCTATT
128 AAAAAATAAATCTATTTATCGAACA-AGTTCAAATAGTTATGACTATTTGAATCAATTATCTATT
** * * * *
21167521 TCAAATTGTTATAACCTTTT-TTCTATCATAAAATAATTATTTCTGTTCATACAAGTTTATTTAG
192 TCAAATCATTATAACCTTTTGTTCTATCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCAG
* * * *
21167585 AATAAAATAATACTAATTTACTAATATTCTAAAAATTCATAACTAAGAGATTTAAAAAATAAATC
257 AATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAAATC
* * * * * * *
21167650 GTTTGCTGAACCAATTC-AACAGTTAAGACTATTTGAATAGTTATCTATTTCAAATCGTTATAAC
322 ATTTTCTGAACAAATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAAATCATTATGAC
* * * * * *
21167714 -CTTT-TTCTATCATAAAACAATTATTTTAACTT-ATACAAGTTTATTTGAAATAAAATAA-AAC
387 ATTTTGTTTTGTCATAAAACAATTGTTTT-AGTTCATACAAGCTTATTTGAAATAAAATAATAA-
* * * * *
21167775 TAATTTGTTAATATTTCAAAATTTTATAAGTAAGAGATTTAAAAAATAATTCTATTTACCAAATC
450 TAATTTATTAATATTCCAAAA--AT-TAA-TAAGTGATTTAAAAAATAATT-TGTTTACC-AA--
* *
21167840 AGTTCAAATAATTATAATAATTATAACTATTTGAAC
507 A--TC-AAT--TCA-AATAATTATGACTATTTGAAC
* * * ** *
21167876 AATTATTTATTTCAAATCATTATTACTTTTGTTTTGTCATAAAA-AATTGTTTTTGTTCATATAA
1 AATTATCTATTTCAAATCATTATAACTATTGTTTTGTCATAAAACAATTGTTTTTCATCATACAA
* * * * *
21167940 GTTTGTTCAAAATAAAATAATACTAATTTATTAATATTTAGAAAATTAATCAGTAAGAGA--TAA
66 GCTTATTCAGAATAAAATAATACTAATTTATTAATATTCA-AAAATTAATAAGTAAGAGATTTAA
* * * * * * * *
21168003 AAAATAAATC-GTTTACCAAACCATTTCATATAGTTTTGACTATATGAAT-AATTATCTATTTCA
130 AAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATCAATTATCTATTTCA
* * * * * * ** **
21168066 AATCATTATAACTTTTTGTT-TGTCAT-CAA-AATTGGTTCTGTTTATACTATTTTATTTGGAAT
195 AATCATTATAACCTTTTGTTCTATCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCAGAAT
* * * * * * *
21168128 AAAATAATACTAATTTAATAATATTTTGAAACTTAATAACCAAGAAAATTAAAAGATAAGTCTAA
260 AAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAAATC-AT
* * * ** *
21168193 TTGCTGAACGAGTTCAAATAGTTAAGACTACATGAATGATTATCTATTTCAAATCATTATGACCA
324 TTTCTGAACAAATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAAATCATTATGA-CA
* * * *
21168258 -TTTGTTTTGTCATAAAACAATT-TTTTAGTTCGTATAAGCTTATTTGGATTAAAATAATACA-A
388 TTTTGTTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATA-ATA
* ** * * * *
21168320 ATTTAATAATATTTTAAAAATTAATAAGTAAGAGATTTTAAAAA-AATTTGTTTATCGAA-CTAG
452 ATTTATTAATATTCCAAAAATTAATAAGT----GATTTAAAAAATAATTTGTTTACCAAATC-AA
* * * *
21168383 TTTATATGATTAAT-ACTATTAGAAC
512 TTCAAATAATT-ATGACTATTTGAAC
* * * * * * *
21168408 AATTATCTATTTCAAATCGTTTTGACCTTTTGTTTAGTCATAAAGCAATTG--TTTCAATTCATG
1 AATTATCTATTTCAAATCATTAT-AACTATTGTTTTGTCATAAAACAATTGTTTTTC-A-TCATA
* * * *
21168471 CAAGCTTATTCAGAATAAATTAATACTAATTTATTAACATTCAAAAATTAAGAAGAAAGAGATTT
63 CAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAAGAGATTT
* * * *
21168536 AAGAAAATAAGTCTATTTATCGAACAAGCTCAAATAGTTATAACTATTTGAA-CAATTGTCTATT
128 AA-AAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATCAATTATCTATT
* * * * ** *
21168600 TAAAATCACTAT-ACCTTTTGTT-TTTCATAAAACAATTGTTTC-GTTAATATGAGTTTA-T-AT
192 TCAAATCATTATAACCTTTTGTTCTATCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCA-
* * * * *
21168660 GATACAAAATTAATAC-AATTTATTAATATTTCT--AAATTAACAAGTAAGAGATTTTAAAAATA
256 GA-ATAAAA-TAATACTAATTTAATAATATTT-TGAAAATTAATAACTAAGAGATTTAAAAAATA
* * * * * * * *
21168722 AAT-TTTTTATCAA-ATCAATT-AAATAATTATG-CAATTTGAATAATTATCTATTCCAATAGCA
318 AATCATTTTCTGAACA--AATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAA-ATCA
* * * * ** *
21168783 --ATAACCA-TTTGTTTTGTTATCAAACAATTATTTTTTTATCATACAAGCTTATTCGAAATAAA
380 TTATGA-CATTTTGTTTTGTCATAAAACAATTGTTTTAGT-TCATACAAGCTTATTTGAAATAAA
* * *
21168845 ATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTA
443 ATAATAATAATTTATTAATATTCCAAAAATTAATAAGT----GATTTAAAAAAT-AATTTGTTTA
* * * * ** * ** *
21168910 TCGAACCAATTCAAATAGTTACAATTATAAGAAT
503 CCAAATCAATTCAAATAATTATGACTATTTGAAC
* * *
21168944 AATTATCTATTTCAAATCATTCTAACCTATT-TTTAGTCATAAAA-AATT-TGTTTCATATCATA
1 AATTATCTATTTCAAATCATTATAA-CTATTGTTTTGTCATAAAACAATTGTTTTTC--ATCATA
* * * * *
21169006 CAATCTTATTCAGAATAAAATAATCCTAATATATTAACATTCAAAAAATTAATAAGCAAGAGATT
63 CAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAAGAGATT
* * * * *
21169071 TGAAAAATAAATCTATTTACCGAATAAGCTCAAATAGTTATGACTATTTAAATCAATTAAT-TAT
127 TAAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATCAATT-ATCTAT
* * * * * * ** * * *
21169135 TTAAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGCTTCAATTCATAAAAGGTTATCCA
191 TTCAAATCATTATAACCTTTTGTTCTATCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCA
* ** * *
21169200 AAATAAAATAATACTAATTTTTTAATATTTTAAAAATTAATAACCAAGAGATTTAAAAAAATAAA
256 GAATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGATTT-AAAAAATAAA
* * * * * *
21169265 TGCATTTTTTGAACAAATTCAAATAGTTACGACTATTTGAACAATTGTATATTTAAAATCATTAT
320 T-CATTTTCTGAACAAATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAAATCATTAT
* * * * *
21169330 GATATTTTGTTTTATCATAAAAAAATTGTTTCATTTCATTA-AAGCTTATTTGAAATAAAATAAT
384 GACATTTTGTTTTGTCATAAAACAATTGTTTTAGTTCA-TACAAGCTTATTTGAAATAAAATAAT
*
21169394 AATAATTTATTAATATTCCAAAAATTAATAAGTGATTTAAAAAGTGAATTTGTTTACCAAATCAA
448 AATAATTTATTAATATTCCAAAAATTAATAAGTGATTTAAAAAAT-AATTTGTTTACCAAATCAA
* *
21169459 TTCAAATAATTATGGCTATTTCAAC
512 TTCAAATAATTATGACTATTTGAAC
* * *
21169484 AATTATGTGTTTCAAATCGTTATGAAC-ATTGTTTTGTCATAAAACAATTGTTTTTCATCATACA
1 AATTATCTATTTCAAATCATTAT-AACTATTGTTTTGTCATAAAACAATTGTTTTTCATCATACA
* ** *
21169548 AGCTTGTTTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATGAGTAAGAGATTTA
65 AGCTTATTCAGAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTTA
* * * *
21169613 AAAAATAAATTTGTTTATC--A-AAG------TA-TT-T-CCTATTTGAAT-AATTACCTATTTC
129 AAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATCAATTATCTATTTC
* * *
21169665 AAATCATTATAACCTTTTCTTCTATTATAAATA-AA-TGTTT-TAGTTCATACAAGCTTATTCAA
194 AAATCATTATAACCTTTTGTTCTATCATAAA-ACAATTGTTTCT-GTTCATACAAGCTTATTCAG
* * * *
21169727 AATAAAATAATAATATTTTAATAATATTATGAAAATTAATAACTAAGGGATTTAAAAAATAAATC
257 AATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAAAT-
* * * * * **
21169792 CGTTTGT-TGAAGC-AGTTTAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATTGTTAT
321 CATTT-TCTGAA-CAAATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAAATCATTAT
* * *
21169855 GAAATTTTGTTTTATCATAAAACAATTGTTTTAGTTCATAAAAGCTTATTTGAAATAAAATAATA
384 GACATTTTGTTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATA
* * * ** *
21169920 AAAATTTATTAATATTCCAAAAATTAATAAGTGATTTAAAAAGTGAATCTGTTTACTGAATCATT
449 ATAATTTATTAATATTCCAAAAATTAATAAGTGATTTAAAAAAT-AATTTGTTTACCAAATCAAT
* * *
21169985 TCAAATAATTATGGCCATTTCAAC
513 TCAAATAATTATGACTATTTGAAC
* * * * ** * * *
21170009 ATTTATCTATTTCAAATCATTATTACCATT-TGTATGTCATATGACAAATGTTTTTGATCATTCA
1 AATTATCTATTTCAAATCATTATAACTATTGT-TTTGTCATAAAACAATTGTTTTTCATCATACA
* * * *
21170073 AGCTTATTCAGAATACAATAATACTAATTTATTAATCTTTTAAAAATTAATAAG---CA-ATTTA
65 AGCTTATTCAGAATAAAATAATACTAATTTATTAAT-ATTCAAAAATTAATAAGTAAGAGATTTA
* ** * * * * * *
21170134 AAAAATAAATCTGTTTATTAAACTAGTTCAAATAATTATAACTATTTGAA-CAATTGTATACTTC
129 AAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATCAATTATCTATTTC
** * * * * * **
21170198 AAATTTTTATAACCATTTGTTCTATCACAAAATAATTATTTCTGTTCATATAAGCTTATTTGGAA
194 AAATCATTATAACCTTTTGTTCTATCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCAGAA
* * *
21170263 TAAAATAATACTAATATAATAATATTATGAAAATTAATAACTAAGAGAATT-AAAAATAAAT--T
259 TAAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAAATCAT
* * * * *
21170325 TGTT-TGACCAATTAGTTCAAATATTTAAGACTATATGAACAATTATCTATTTCAAAAT-GTTAT
324 T-TTCTGAACAA--A-TTCAAATAGTTAAGACTATTTGAATAATTATCTATTTC-AAATCATTAT
* * ** * * ** * *
21170388 GACCTTTTGCTTTGTCATAAAACAA-AATTTTAATTCATACTAGCGGATTCGAAAAAAAATAA-A
384 GACATTTTGTTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATA
*
21170451 ATGAATTTATTAATATTTCAAAAATTAATAAGTAAGATATTTAAAAAAATATATTTTTGTTTACC
449 AT-AATTTATTAATATTCCAAAAATTAATAAGT--G--ATTT-AAAAAATA-A--TTTGTTTACC
* * *
21170516 TAACCAATTCAAATAATTATGACTATTTAAAC
505 AAATCAATTCAAATAATTATGACTATTTGAAC
* * * * * ** *
21170548 AATTATCTATTCCGAGTCATTATAACCTTTTGTTTTGTCATAAAACAAATGTTTTTGTTCATATA
1 AATTATCTATTTCAAATCATTATAA-CTATTGTTTTGTCATAAAACAATTGTTTTTCATCATACA
* * * * *
21170613 AGTTTGTT-TGAAATAAAGTAATACTAATCTATTAATATTTCAAAAA-T--TAA-TAAGAGATTT
65 AGCTTATTCAG-AATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTT
* * * * * *
21170673 AAAAAATTAATCTA-TTATCAAACCAGTTCAAATAGTTATCACTATTTG--GCAAATTATTTATT
128 AAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATC-AATTATCTATT
** * * * * * * * ** * *
21170735 TCAAATTTTTTTGACTTTTTGTCCTATTATAAAACATTTGTTTCTATTTGTACATGCTTATTCAT
192 TCAAATCATTATAACCTTTTGTTCTATCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCAG
* * * * * *
21170800 ATTAAAATAATACTAATTTAGTAATATTTTGACAATTAATAAGTAA-AAATTTTTAAAAATAAAT
257 AATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGA-TTTAAAAAATAAAT
** * * * * * * *
21170864 -ATATTTACCAAACTAGTCCAAATAGTCATGATTATTTGAATAATTATCTATTTCAAATTATTAT
321 CAT-TTT-CTGAACAAATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAAATCATTAT
** * * * ** * * *
21170928 GACCCTTTCTTTTGTCATAAAAGATTTGTTTCGGTTCATATAAGTTTATTCGAAATAAAATAAT-
384 GACATTTTGTTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATA
* * * * *
21170992 ATCAATTTATTAATATTCCAAAAATTAATAATTAAGAGATTTAAAAAAAGAATCTATTTACTAAA
449 AT-AATTTATTAATATTCCAAAAA-T--TAA-TAAGTGATTT-AAAAAATAATTTGTTTACCAAA
* * *
21171057 T-AAGTTTAAATAATTATGACTGTTTGAAT
508 TCAA-TTCAAATAATTATGACTATTTGAAC
* ** * * * * *
21171086 AATTATCTATTTGAAATTCGCTATAACATTTTGTTTTGACATAAAATAATT-TTTTT--T-GTTC
1 AATTATCTATTTCAAA-TCATTATAAC-TATTGTTTTGTCATAAAACAATTGTTTTTCATCATAC
* ** * * * * * *
21171147 AAAC-TATTTTGAATAAAATAATACAAAATTAGTAATACTAAGAAAATTAATAAGTAAAAGATTT
64 AAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTCA-AAAATTAATAAGTAAGAGATTT
* * *
21171211 AAAAAATAAATTTGTTTATCGAACAAGTTCAAAT-GTTATGACTATTTGAA-CAATTATTTATTT
128 AAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATCAATTATCTATTT
* ** * * *
21171274 CGAATTGTTATGA-CTCTTTGTT-TCGTCATAAAACAATTATTTCTGTTCATACAAGAC-TATTC
193 CAAATCATTATAACCT-TTTGTTCT-ATCATAAAACAATTGTTTCTGTTCATACAAG-CTTATTC
* * * * * * * * * *
21171336 GGATTAAAAGAATATTAA-TTATTAATATTTTGACAGTTAATAAGTAAAATATTTAAAAAAATAA
255 AGAATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGATTT-AAAAAATAA
* * * * * *
21171400 AT-ATGTTTACCGAACAAGTTGAAATAGTCATGACTATTTGAATAATTAACTATTTCAAATCATT
319 ATCAT-TTT-CTGAACAAATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAAATCATT
* * * * * * * * *
21171464 ATAACCTTCTGTTTTGTAATAATACAACTGTTTTAATTCAAATAAGCTTATTTGAAATAAAATAA
382 ATGACATTTTGTTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAA
* * * * * *
21171529 TACTAATTTATTAATATTCTAAAAATTAATGAGTAAGAGACTTAAAAAATAAATCTGTTTACCGA
447 TAATAATTTATTAATATTCCAAAAATT-A--A-TAAGTGATTTAAAAAAT-AATTTGTTTACCAA
* ** * *
21171594 A-CAAGCTCAAATTGTTATGACTATCTGAAT
507 ATCAA-TTCAAATAATTATGACTATTTGAAC
* * * * * * * * *
21171624 AATTATCTATTTCAAAACATCATGACTTTTTTTTTAATCATAAAACAATTGGTTCT-ATTCAT-T
1 AATTATCTATTTCAAATCATTATAACTATTGTTTT-GTCATAAAACAATTGTTTTTCA-TCATAC
* * *
21171687 AAGCTTATTTC-GAATAAAATAATA-TAAACTGATTAATATTACAAAAATTAATAAGTAA-AAAT
64 AAGCTTA-TTCAGAATAAAATAATACT-AATTTATTAATATT-CAAAAATTAATAAGTAAGAGAT
* * *
21171749 TTAAAAAATAAATCTGTTT-TCTAAACACGTTCAAATAGTTAT-ATCTATTTGAA-CAATTATGC
126 TTAAAAAATAAATCTATTTATC-GAACAAGTTCAAATAGTTATGA-CTATTTGAATCAATTAT-C
* * * * *
21171811 -ATTTCAAAT--TGT-T-A-----TG----ATC-T------TTTGTTTTTGTTAATAAAATCTTA
188 TATTTCAAATCAT-TATAACCTTTTGTTCTATCATAAAACAATTGTTTCTGTTCATACAAGCTTA
* * * *** * *
21171855 TTCAGTATAAAATAATACTAATTTATTAAAATTACAAAAATTAATAAGTAAAAGATTTTAAAAAA
252 TTCAGAATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGA-TTTAAAAAA
* *** * * * * *
21171920 TAAAATCTATTTACTGAGTGAGTTCAAATAGTTATGACTATTTGAAAAATTATTTATTTCAAATT
316 T-AAATC-ATTTTCTGAACAAATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAAATC
* * * * * * * *
21171985 GTTATGATC-TTTTGTCTTCTCATAAAATAATTATTTCTACTT-ATACAAGTTTATTCGAAATAA
379 ATTATGA-CATTTTGTTTTGTCATAAAACAATTGTTT-TAGTTCATACAAGCTTATTTGAAATAA
* * * * * *
21172048 AATAATATTAATCTATTAATATTCTAAAAATTAATAAGTTAGAGATTT-AAAAATAAATCTATTC
442 AATAATAATAATTTATTAATATTCCAAAAATTAATAAG-T---GATTTAAAAAAT-AATTTGTTT
* * * * * **
21172112 ACTAAA-CAAGTTCAAATAGTCAAGTCTATTCAAAC
502 ACCAAATCAA-TTCAAATAATTATGACTATTTGAAC
* * * * * * * *
21172147 TATTAACTATTTCAAATCGTTATGACATTTTGTTTTGTCGTAAAATAATTGTTTTT-ATTCAAAC
1 AATTATCTATTTCAAATCATTATAAC-TATTGTTTTGTCATAAAACAATTGTTTTTCA-TCATAC
** * **
21172211 AAAATTATTCAAAATAAAATAATACTAATTTATTAATATTTTGAAAA-T-A-AA-TAAGAGATTT
64 AAGCTTATTCAGAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGATTT
** * * ** * *
21172272 AAAACCTAAATCAATTTATTGAATTAGTTCAAATAGTTATGACTATTTGAA-CTATTATCTATCT
128 AAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATCAATTATCTATTT
* ** * * * ** * * *
21172336 AAAATTGTTATGATCTTTT-TT-TCTCATAAAGTAATTGTTTTTATTCATACAAGTTTATTCAGA
193 CAAATCATTATAACCTTTTGTTCTATCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCAGA
* * * * * * * *
21172399 GTAAAATATTGCTGAA-TTAATAATATTCTAAAAATTAATAAGTAAGAGATGTAAAACATAAAT-
258 ATAAAATAATACT-AATTTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAAATC
* * * * * * * * *
21172462 GTGTTTGTTGAACTAGTTCAAATAGTTAAGACTAGTAGAACAATTAT-TTTTGTC--ATCA-AAT
322 AT-TTT-CTGAACAAATTCAAATAGTTAAGACTATTTGAATAATTATCTATT-TCAAATCATTAT
* * * * * * * * * *
21172523 -A-A-TTGGTTCTAT-TCAT---ACTATT-TTATTCAGAATAAAATAATACTAATTTAATAATAT
384 GACATTTTGTT-T-TGTCATAAAACAATTGTT-TT-AG-TTCATACAA-GCTTATTTGA-AATAA
** ** ** * * * * * ** *
21172580 TTTGAAACTTAATAA-CCAAGAAAATT-AAAAAATAAATCTAAGTG-TTGAACTAGTTCCAA-TA
442 AAT--AA--TAATAATTTATTAATATTCCAAAAATTAA--TAAGTGATTTAA-AAAAT--AATTT
* * * * * ** * * *
21172641 GTTAAGACTATATGAATGATTATCTATTTCA-AACTGTTAT-AAC
498 GTT--TACCAAATCAAT--TCAAATAATT-ATGACTATT-TGAAC
* * * ** *
21172684 -ATTTTGCT-TTGTC--AT-A--A-AACAATTGTTTTGTTCGT---ACAAGTT-TATTTGGATTT
1 AATTAT-CTATT-TCAAATCATTATAACTATTGTTTTG-TCATAAAACAA-TTGT-TTTTCA-TC
* * * * ** ** * * *
21172737 AAATAATACTAATTC--AAT--AAT-ATTTTAA-AAATTAATATGT-AAGAGATTTAAAAAATAA
60 ATACAA-GCTTATTCAGAATAAAATAATACTAATTTATTAATAT-TCAA-A-AATTAATAAGTAA
*** * * * * ** * *
21172795 -ATTTG-TTTATCGAATAAGTTCAAATGGTTA-AG-ACTA-TTTGAATAATTAT--CTATTTCAA
121 GA---GATTTAAAAAATAA-ATC-TAT--TTATCGAACAAGTTCAAATAGTTATGACTATTT-GA
* * *** ** * ** * * **
21172853 ATC-GTTTTGGCCT-TTT-GTTTGGTTATAAAACAATTGTT-TCAGCTCATACAAGCTTATTCAA
178 ATCAATTAT---CTATTTCAAATCATTAT-AACCTTTTGTTCT-A--TCATA-AAAC-AATT-GT
** ** * * * * * * *
21172914 AACAAATTAATACTAA-TTTATTAACATTCAAAA-AAT--TAA-TTACA-AA-A----GGAGATT
233 TTC-TGTTCATAC-AAGCTTATTCAGAAT-AAAATAATACTAATTTA-ATAATATTTTGAAAATT
* * * ** * *
21172968 -TTAA--AA-A-A--T---AAAT--CT-ATTTACCAAACAAGTTCAAATAGTTATTG-CTATTTG
294 AATAACTAAGAGATTTAAAAAATAAATCATTTTCTGAACAAATTCAAATAGTTA-AGACTATTTG
** * * * ** * * * *
21173019 AGCAATTGTTTATTTAAAATTGTTATAACCA-TTTGGTTTGTCATAAAATAATTATTTTAGTT-A
358 AATAATTATCTATTTCAAATCATTATGA-CATTTTGTTTTGTCATAAAACAATTGTTTTAGTTCA
*** * * *
21173082 GTACAAGCTTA-GACAGAATAAAATAATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAA
422 -TACAAGCTTATTTGA-AATAAAATAATAATAATTTATTAATATTCCAAAAATTAATAAGT----
* * * ** * * ** * * *
21173146 AATTTTAAAAATAAATATGTTTACTGAATTAGTAAAAATAATTATGGCAATTTGAAT
481 GATTTAAAAAAT-AATTTGTTTACCAAATCAATTCAAATAATTATGACTATTTGAAC
* * * * *
21173203 GATTATCTATTTGAAATCATTATGAGCTTTTTGTTTTGTCATAAAA-AATTGTTTTTTATCATAC
1 AATTATCTATTTCAAATCATTAT-AAC-TATTGTTTTGTCATAAAACAATTGTTTTTCATCATAC
* * * *
21173267 AAGCTTATTCAAAATAAAATAATAATAATAATAATTTATTAATATTTGAAAAATTAATTAGTAAG
64 AAGCTTATTC-----AGAATAA-AATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAG
* * * * * *
21173332 AGATTTAAAAAATAAATTTGTTTACCGAACTAGTTCAAATAGGTATGAATATTTGAA-CAATT-T
122 AGATTTAAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATCAATTAT
* * * * * * * * *
21173395 ACGATCTCAAATCGTTA-AGA-TTTTTGTTTTGTCATTAAACAATTGTTT-TTTATCATAGAAGC
187 -CTATTTCAAATCATTATA-ACCTTTTGTTCTATCATAAAACAATTGTTTCTGT-TCATACAAGC
* ** ** * * *
21173457 TTACTC-GGTTAAAAATAATACTAATTTAATAATATTTCAAAAATTACTAAATAGGAGATTTAAA
249 TTATTCAGAAT-AAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAA
* * * * * * * *
21173521 AAATAAAT-GTGCTTGTGAA-ATTAGTTCAAATAATTAAAACCATTAGAATAATTATCTATTTCA
313 AAATAAATCAT-TTTCTGAACA--AATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCA
* ** * * * * * * * * *
21173584 GATTGTTCTGATATTTTGTTTAT-TCAAAAAATATTTATTTCA-TATCTTACAAGCTTATTTGGA
375 AATCATTATGACATTTTGTTT-TGTCATAAAACAATTGTTTTAGT-TCATACAAGCTTATTTGAA
* * * *** *
21173647 ATAAAATAATCCA-AATTTAGTAACATTTGGAAAATTAATAAGCAAAAGATTTGAAAAAATAAAT
438 ATAAAATAAT-AATAATTTATTAATATTCCAAAAATTAATAAG----TGATTT-AAAAAAT-AAT
* * * * *
21173711 CTATTTACCGAA-CAAGTTCAAATAGTTATGATTATTTGAAC
496 TTGTTTACCAAATCAA-TTCAAATAATTATGACTATTTGAAC
* * * * * *
21173752 AATTATTTATTTAAAATCATTATGACATTTTGTTTTGACATAAAACAATTG--TTTCAGTTGATA
1 AATTATCTATTTCAAATCATTATAAC-TATTGTTTTGTCATAAAACAATTGTTTTTCA--TCATA
* * * * * * * *
21173815 AAAGCATA-ACAAAAATAAAATAATAATAATTTCTTAATATTTTAAAAATTAATAAGCAAGAG-T
63 CAAGCTTATTC-AGAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAAGAGAT
* * * * ** * *
21173878 TTAAAAAAGTAAATTTGTTTACCGAACAAATTCAAATAGTTACAACTATTT-AAACAATTATTTA
126 TTAAAAAA-TAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATCAATTATCTA
* * * * * * *
21173942 TTTAAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGCTTT-TGTTCATACAAGTTTGTT
190 TTTCAAATCATTATAACCTTTTGTTCTATCATAAAACAATTG-TTTCTGTTCATACAAGCTTATT
* * * ** * * * *
21174006 -TGAAATAAAATAATACTAATTTATTAATA-GTCCAAAA--ATTAA-TAAGTGATTTAAAAAGTG
254 CAG-AATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAAAAATA
** ** * * * * *
21174066 AATC-TGTTTACCAAATTAGTTCAAATAATTATCG-CCATTTCAATAATTATCTATTTCAAATCA
318 AATCAT-TTT-CTGAACAAATTCAAATAGTTA-AGACTATTTGAATAATTATCTATTTCAAATCA
* * * * * * *
21174129 TTGTTACCTTTTG-TTTGATCATATAACAATTGTTTTA-TATCATACTAGCATATTTGGAATAAA
380 TTATGACATTTTGTTTTG-TCATAAAACAATTGTTTTAGT-TCATACAAGCTTATTTGAAATAAA
* * *
21174192 ATAATACTAATTTCA-TAATCTTTCAAAAATTAATAAGTAAGAGATTTAAAAAA-AATTTGTTTA
443 ATAATAATAATTT-ATTAATATTCCAAAAATTAATAAGT----GATTTAAAAAATAATTTGTTTA
** * * *
21174255 CTGAACCAATTCAAATAGTTATGACTATTTGAAG
503 CCAAATCAATTCAAATAATTATGACTATTTGAAC
* * * * * * * * *
21174289 AATTGTATACTTCAAATCAATTATTTACAAAATAAACATTTTGTTCTATTATAAAATAATTATTT
1 AATTATCTATTTCAAATC----A-TT-----AT-AAC-TATTGTTTTGTCATAAAACAATTGTTT
* * * * * * *
21174354 ATGTC--CATACATGTTTATTCAAAATAAAAGAATACTAATCTAATAATATTTAAAAAATTAATA
54 -T-TCATCATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATA
* ** * * * * * * * * * *
21174417 ACTAAGAGATTTAAAATTTAAATTTGTTTGTCAAACTAGTTCAATTTGTTAAGACTATATAAAT-
116 AGTAAGAGATTTAAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATC
** ** * * * *
21174481 AATTATCTATTTCAAATTGTTACGACATTTTG-TCTTGTCATAAAACAATT-TTTTTAGTTCAAA
181 AATTATCTATTTCAAATCATTATAACCTTTTGTTC-TATCATAAAACAATTGTTTCT-GTTCATA
* * * ** *
21174544 CTAGCTTATT-TGAAATAAAATAA-AATGAATTT-ATAGATATTTCAAAAATTAATAAGTAAGAG
244 CAAGCTTATTCAG-AATAAAATAATACT-AATTTAATA-ATATTTTGAAAATTAATAACTAAGAG
* * * * * * *
21174606 ATTTAAAAAATAATTCTATTTACCT-AACTAGTTCTAAT-GATTATGACTATTTGAATAATTTTC
306 ATTTAAAAAATAAATC-ATTT-TCTGAACAAATTCAAATAG-TTAAGACTATTTGAATAATTATC
** * * * *
21174669 TATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAAAAAATGCTTTT-GTTCAT--AA---TA
368 TATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTG-TTTTAGTTCATACAAGCTTA
* ** * *
21174728 ----AAAT---A-AA-CA-AATCCATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAAT
432 TTTGAAATAAAATAATAATAATTTATTAATATTCCAAAAATTAATAAGTGATTTAAAAAAT-AAT
* * * * *
21174783 CTT-TTTATCAAA-CTAGTTCAAATAGTTATGACTAATTGAGC
496 -TTGTTTACCAAATC-AATTCAAATAATTATGACTATTTGAAC
* * * * * * * *
21174824 AATTAAT-TATTTCAAATCATTCTGACTTTTTGTTCTATTATAAAACAATAGTTTCT-ATTCATA
1 AATT-ATCTATTTCAAATCATTATAAC-TATTGTTTTGTCATAAAACAATTGTTTTTCA-TCATA
* * * * * *
21174887 CAAGCTTATTCGGATTAAAATAATATTAATTTATTATTATTTCAATAATTAATAAGTTAA-AAAT
63 CAAGCTTATTCAGAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAG-TAAGAGAT
* * * * *
21174951 TT-AAAAATAAATATTTTTA-CTGAACTAGATCAAATAGTCATGACTATTTGAAT-AATTATCTA
126 TTAAAAAATAAATCTATTTATC-GAACAAGTTCAAATAGTTATGACTATTTGAATCAATTATCTA
** * * * * * *
21175013 TTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACAAATGCTTT-TGTTCATATAAGTTTGTT
190 TTTCAAATCATTATAACCTTTTGTTCTATCATAAAACAATTG-TTTCTGTTCATACAAGCTTATT
* * * * * *
21175077 CATAATAAAATAA-ACAAATCTATTAATA-TTTCAAAA--ATTAA-TAAGAGATTTAAAAAATAA
254 CAGAATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAA
* * * * * * ** *
21175137 ATCTTTTTATCAAACTAGTTCAAATAGTTATGACTATTTGAGCAATTAATC-ATTTCAAATTACT
319 ATCATTTTCT-GAACAAATTCAAATAGTTAAGACTATTTGAATAATT-ATCTATTTCAAATCA-T
* * * * * * * *
21175201 T-TGACTTTTTGTTCTATTATAAAACAATAGTTTCTA-TTCATACAAGCTTATTCGGATTAAAAT
381 TATGACATTTTGTTTTGTCATAAAACAATTGTTT-TAGTTCATACAAGCTTATTTGAAATAAAAT
* * * * * * * *
21175264 AATATTAATTTATTATTATTTCAACAATTAATAAGTTAAAAATTTTAAAAATAAATATGTTTACT
445 AATAATAATTTATTAATATTCCAAAAATTAATAAG-T---GATTTAAAAAAT-AATTTGTTTACC
* * * *
21175329 GAA-CTAGA-TCAAATAGTCATGACTATTTGAAT
505 AAATC-A-ATTCAAATAATTATGACTATTTGAAC
** * * * * * *
21175361 AATTATCTATTTCAAATTGTTATGA-TTTTTTTTTGTCATAAAA-AAAT-TATTTCAGGTCATAT
1 AATTATCTATTTCAAATCATTATAACTATTGTTTTGTCATAAAACAATTGTTTTTCA--TCATAC
* * * *
21175423 AAGCTTATTC-GAAATAAAATAATACCAAGTTGTTAATATTCCAAAAATTAATAATTAAGAGATT
64 AAGCTTATTCAG-AATAAAATAATACTAATTTATTAATATT-CAAAAATTAATAAGTAAGAGATT
* * *
21175487 TAAAAAATGAAA-CTATTTA-CAAAACAAGTTTAAATAATTATGACTATTT-AGA-CAATTATCT
127 TAAAAAAT-AAATCTATTTATC-GAACAAGTTCAAATAGTTATGACTATTTGA-ATCAATTATCT
* * *
21175548 ATTTAGAAATGC--TATAACCTTTTGTTTTGTCATAAAA-AGA--GTTCATCTGTTCATACAAGC
189 ATTT-CAAAT-CATTATAACCTTTTGTTCTATCATAAAACA-ATTGTT--TCTGTTCATACAAGC
* * * ** * * *
21175608 CTATTTCAG-ATAAAATAATACAAATTTATTAATATTAAGACAATTAATAATTAAAAGATTTAAA
249 TTA-TTCAGAATAAAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAA
** * * * * * * *
21175672 AAATAAATCCATTCAC-CACACAAGTTTAAATCGTTATGACTATTTG-------AGC-A--ACAA
313 AAATAAAT-CATTTTCTGA-ACAAATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAA
* * * * * * *
21175726 ATTATTATGACTTTTTTTTTTGTCATAAAACAATTATTTTTA-TTCATATAAGCTTA-TTCAGAT
376 ATCATTATGACATTTTGTTTTGTCATAAAACAATT-GTTTTAGTTCATACAAGCTTATTTGA-AA
* * * * ** * *
21175789 TAAAATAATATTAATTTATTAATATTTTGACAATTAATTAGTAAAAGATTTAGAAAATAAATATG
439 TAAAATAATAATAATTTATTAATA--TT-CCAA-AAATTAATAAGTGATTTAAAAAAT-AATTTG
** * * * *
21175854 TTTACTGAA-CAATTTCAAATAGTCATGACTATTTTAAT
499 TTTACCAAATCAA-TTCAAATAATTATGACTATTTGAAC
* * * * * * *
21175892 AATTATCTATTTCAAATTATTGTGATCTTTTATTTTGTAATAAAACAATTG--TTTCAATTA-AC
1 AATTATCTATTTCAAATCATTAT-AACTATTGTTTTGTCATAAAACAATTGTTTTTC-ATCATAC
* * *
21175954 ATAAGCTTATT-TGAAGTAAAATAATACTAATTTATTAATATTCCAAAAATTAATGATTAAGAGA
64 --AAGCTTATTCAGAA-TAAAATAATACTAATTTATTAATATT-CAAAAATTAATAAGTAAGAGA
** * * * *
21176018 ACTAGAAAAATAAATCTATTTA-CTGAATAAGTTCAAAGAGTTTTGACTATCTGAA-CAATTATC
125 TTTA-AAAAATAAATCTATTTATC-GAACAAGTTCAAATAGTTATGACTATTTGAATCAATTATC
* * * * * * * * * *
21176081 TATTTCAAAACATTATGACCTTTTCTTTTGTCAGAAAACAAATGGTTCTATTCATCCAAGCTTAT
188 TATTTCAAATCATTATAACCTTTTGTTCTATCATAAAACAATTGTTTCTGTTCATACAAGCTTA-
* ** * * * *
21176146 TTC-GAATAAAATAATA-TAAATTAATTAATA-TTCCAAAAGTTAATAA-GAAAAAATTTTAAAA
252 TTCAGAATAAAATAATACTAATTTAA-TAATATTTTGAAAA-TTAATAACTAAGAGATTTAAAAA
* * * * *
21176207 ATAAAT-TTGTTTACTAAACACATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
315 ATAAATCAT-TTT-CTGAACAAATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAAAT
*
21176271 CATTATGACCA-TTTGTTTTGTCAT-AAACTAATTGTTTCT-GTTCATACAAGCTTATTTGGAAT
378 CATTATGA-CATTTTGTTTTGTCATAAAAC-AATTGTTT-TAGTTCATACAAGCTTATTTGAAAT
* * * *
21176333 AAAATAATACTAATTTATTAAAATTCCAAAAGTTAATAAGAAAAAGATTTAAAAAATAAATCTT-
440 AAAATAATAATAATTTATTAATATTCCAAAAATTAATAAG----TGATTTAAAAAAT-AAT-TTG
* * * * * *
21176397 TTTA-TAGAGCGAGTTCAAATAGTTATGACTATTTGAAT
499 TTTACCAAATC-AATTCAAATAATTATGACTATTTGAAC
* * ** * * * *
21176435 AATTATTTGTTTCAAATTGTTATGATCCATTGTTTTGTCATAAAACAATTGTTTCT-ATTCATAA
1 AATTATCTATTTCAAATCATTAT-AACTATTGTTTTGTCATAAAACAATTGTTTTTCA-TCATAC
* * * *
21176499 AAGTTTATTTAGAATAAAATAATATTAATTTATTAATATTCTAAAAATTAATAAGTTAGAGATTT
64 AAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAAGAGATTT
* * * * * ** * *
21176564 AAAAAATAAATTTGTTTATTGAACAAGTTTAAATAGTCATTTCTATTTGAA-CTATCATCTATTT
128 AAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATCAATTATCTATTT
21176628 C
193 C
21176629 GAACTGTCAT
Statistics
Matches: 6718, Mismatches: 1459, Indels: 1152
0.72 0.16 0.12
Matches are distributed among these distances:
516 1 0.00
517 6 0.00
518 90 0.01
519 62 0.01
520 28 0.00
521 110 0.02
522 51 0.01
523 242 0.04
524 266 0.04
525 345 0.05
526 100 0.01
527 65 0.01
528 35 0.01
529 28 0.00
530 58 0.01
531 193 0.03
532 177 0.03
533 395 0.06
534 410 0.06
535 289 0.04
536 338 0.05
537 365 0.05
538 479 0.07
539 303 0.05
540 632 0.09
541 269 0.04
542 225 0.03
543 400 0.06
544 185 0.03
545 42 0.01
546 6 0.00
547 19 0.00
548 310 0.05
549 89 0.01
550 2 0.00
551 6 0.00
552 84 0.01
553 12 0.00
554 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (536 bp):
AATTATCTATTTCAAATCATTATAACTATTGTTTTGTCATAAAACAATTGTTTTTCATCATACAA
GCTTATTCAGAATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAAGAGATTTAAA
AAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAATCAATTATCTATTTCAA
ATCATTATAACCTTTTGTTCTATCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCAGAATA
AAATAATACTAATTTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAAATCATTT
TCTGAACAAATTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAAATCATTATGACATTT
TGTTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTTGAAATAAAATAATAATAATTT
ATTAATATTCCAAAAATTAATAAGTGATTTAAAAAATAATTTGTTTACCAAATCAATTCAAATAA
TTATGACTATTTGAAC
Found at i:21171985 original size:164 final size:161
Alignment explanation
Indices: 21171700--21171999 Score: 426
Period size: 164 Copynumber: 1.8 Consensus size: 161
21171690 CTTATTTCGA
* *
21171700 ATAAAATAATATAAACTGATTAATATTACAAAAATTAATAAGTAAAAATTTAAAAAATAAATCTG
1 ATAAAATAATATAAACTGATTAAAATTACAAAAATTAATAAGTAAAAATTTAAAAAATAAATCTA
* *
21171765 TTTTCTAAACACGTTCAAATAGTTATATCTATTTGAACAATTATGCATTTCAAATTGTTATGATC
66 TTTACTAAACACGTTCAAATAGTTATATCTATTTGAAAAATTATGCATTTCAAATTGTTATGATC
21171830 TTTTGTTTTTGTTAATAAAATCTTATTCAGT
131 TTTTGTTTTTGTTAATAAAATCTTATTCAGT
* *
21171861 ATAAAATAATACT-AATTTATTAAAATTACAAAAATTAATAAGTAAAAGATTTTAAAAAATAAAA
1 ATAAAATAATA-TAAACTGATTAAAATTACAAAAATTAATAAGTAAAA-A-TTTAAAAAAT-AAA
*** **
21171925 TCTATTTACTGAGTGA-GTTCAAATAGTTATGA-CTATTTGAAAAATTATTTATTTCAAATTGTT
62 TCTATTTACT-AAACACGTTCAAATAGTTAT-ATCTATTTGAAAAATTATGCATTTCAAATTGTT
21171988 ATGATCTTTTGT
125 ATGATCTTTTGT
21172000 CTTCTCATAA
Statistics
Matches: 122, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
161 42 0.34
162 2 0.02
163 10 0.08
164 65 0.53
165 3 0.02
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (161 bp):
ATAAAATAATATAAACTGATTAAAATTACAAAAATTAATAAGTAAAAATTTAAAAAATAAATCTA
TTTACTAAACACGTTCAAATAGTTATATCTATTTGAAAAATTATGCATTTCAAATTGTTATGATC
TTTTGTTTTTGTTAATAAAATCTTATTCAGT
Found at i:21172171 original size:180 final size:179
Alignment explanation
Indices: 21171852--21172495 Score: 646
Period size: 180 Copynumber: 3.6 Consensus size: 179
21171842 TAATAAAATC
* * *
21171852 TTATTCAGTATAAAATAATACTAATTTATTAAAATTAC-AAAAATTAATAAGTAAAAGATTTTAA
1 TTATTCA-AATAAAATAATACTAATTTATTAATATT-CTAAAAATTAATAAGTAAGAGA-TTTAA
* * * * * *
21171916 AAAATAAAATCTATTTACTGAGTGAGTTCAAATAGTTATGACTATTTGAAA-AATTATTTATTTC
63 AACAT-AAATCTATTTACTGAATAAGTTCAAATAGTTATGACTA-TTCAAACTATTATCTATTTC
* *
21171980 AAATTGTTATGATCTTTTGTCTTCTCATAAAATAATTATTTCTACTT-ATACAAGT
126 AAATTGTTATGATCTTTTGT-TTCTCATAAAATAATTGTTTTTA-TTCATACAAGT
* * *
21172035 TTATTCGAAATAAAATAATATTAATCTATTAATATTCTAAAAATTAATAAGTTAGAGATTTAAAA
1 TTATTC-AAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAA
* * * * * * *
21172100 -ATAAATCTATTCACTAAACAAGTTCAAATAGTCAAGTCTATTCAAACTATTAACTATTTCAAAT
65 CATAAATCTATTTACTGAATAAGTTCAAATAGTTATGACTATTCAAACTATTATCTATTTCAAAT
* * * * **
21172164 CGTTATGA-CATTTTGTTTTGTCGTAAAATAATTGTTTTTATTCAAACAAAA
130 TGTTATGATC-TTTTG-TTTCTCATAAAATAATTGTTTTTATTCATACAAGT
* *
21172215 TTATTCAAAATAAAATAATACTAATTTATTAATATTTTGAAAA-T-A-AA-TAAGAGATTTAAAA
1 TTATTC-AAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAA
* * * * ** * *
21172276 CCTAAATCAATTTATTGAATTAGTTCAAATAGTTATGACTATTTGAACTATTATCTATCTAAAAT
65 CATAAATCTATTTACTGAATAAGTTCAAATAGTTATGACTATTCAAACTATTATCTATTTCAAAT
*
21172341 TGTTATGATCTTTT-TTTCTCATAAAGTAATTGTTTTTATTCATACAAGT
130 TGTTATGATCTTTTGTTTCTCATAAAATAATTGTTTTTATTCATACAAGT
* * * * *
21172390 TTATTCAGAGTAAAATATTGCTGAA-TTAATAATATTCTAAAAATTAATAAGTAAGAGATGTAAA
1 TTATTCA-AATAAAATAATACT-AATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAA
* * ** *
21172454 ACATAAATGTGTTTGTTGAACT-AGTTCAAATAGTTAAGACTA
64 ACATAAATCTATTTACTGAA-TAAGTTCAAATAGTTATGACTA
21172496 GTAGAACAAT
Statistics
Matches: 379, Mismatches: 67, Indels: 34
0.79 0.14 0.07
Matches are distributed among these distances:
174 1 0.00
175 61 0.16
176 16 0.04
177 63 0.17
178 4 0.01
179 55 0.15
180 119 0.31
181 3 0.01
182 8 0.02
183 48 0.13
184 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (179 bp):
TTATTCAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAC
ATAAATCTATTTACTGAATAAGTTCAAATAGTTATGACTATTCAAACTATTATCTATTTCAAATT
GTTATGATCTTTTGTTTCTCATAAAATAATTGTTTTTATTCATACAAGT
Found at i:21172663 original size:155 final size:155
Alignment explanation
Indices: 21172353--21172650 Score: 368
Period size: 155 Copynumber: 1.9 Consensus size: 155
21172343 TTATGATCTT
* * * * *
21172353 TTTTTCTCATAAAGTAATTGTTTTTATTCATACAAGTTTATTCAGAGTAAAATATTGCTGAATTA
1 TTTTTCTCATAAAGTAATTGGTTCTATTCATACAAGTTTATTCAGAATAAAATAATACTGAATTA
** * * * ***
21172418 ATAATATTCTAAAAATTAATAAGTAAGAGATGTAAAACATAAATGTGTTTGTTGAACTAGTTCAA
66 ATAATATTCTAAAAATTAATAACCAAGAAATGTAAAAAATAAATCTAAGTGTTGAACTAGTTCAA
21172483 ATAGTTAAGACTAGTAGAACAATTA
131 ATAGTTAAGACTAGTAGAACAATTA
* * *
21172508 TTTTTGTCATCAAA-TAATTGGTTCTATTCATACTATTTTATTCAGAATAAAATAATACT-AATT
1 TTTTTCTCAT-AAAGTAATTGGTTCTATTCATACAAGTTTATTCAGAATAAAATAATACTGAA-T
* * *
21172571 TAATAATATTTTGAAACTTAATAACCAAGAAAAT-TAAAAAATAAATCTAAGTGTTGAACTAGTT
64 TAATAATATTCTAAAAATTAATAACCAAG-AAATGTAAAAAATAAATCTAAGTGTTGAACTAGTT
*
21172635 CCAATAGTTAAGACTA
128 CAAATAGTTAAGACTA
21172651 TATGAATGAT
Statistics
Matches: 120, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
154 2 0.02
155 112 0.93
156 6 0.05
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (155 bp):
TTTTTCTCATAAAGTAATTGGTTCTATTCATACAAGTTTATTCAGAATAAAATAATACTGAATTA
ATAATATTCTAAAAATTAATAACCAAGAAATGTAAAAAATAAATCTAAGTGTTGAACTAGTTCAA
ATAGTTAAGACTAGTAGAACAATTA
Found at i:21173285 original size:181 final size:181
Alignment explanation
Indices: 21172545--21177107 Score: 2768
Period size: 181 Copynumber: 25.2 Consensus size: 181
21172535 TCATACTATT
* * ** * ** *
21172545 TTATTCAGAATAAAATAATACTAATTTAATAATATTTTGAAACTTAATAACCAAGAA-AATTAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAA-AAGATTTAAA
* * * * *
21172609 AAATAAATCTAAGTGT--TGAACTAGTTCCAATAGTTAAGACTATATGAATGATTATCTATTTCA
65 AAATAAATCT--GTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCA
* * * * * *
21172672 AA-CTGTTATAACATTTTGCTTTGTCATAAAACAATTGTTTTGT-TCGTACAAGT
128 AATC-GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTATCATACAAGC
* * * * * * * *
21172725 TTATTTGGATTTAAATAATACTAATTCAATAATATTTTAAAAATTAATATGTAAGAGATTTAAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAA
* * *
21172790 AATAAATTTGTTTA-TCGAA-TAAGTTCAAATGGTTAAGACTATTTGAATAATTATCTATTTCAA
66 AATAAATCTGTTTACT-GAACT-AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAA
* * * * ****
21172853 ATCGTTTTGGCCTTTTGTTTGGTTATAAAACAATTGTTTCAGCTCATACAAGC
129 ATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTATCATACAAGC
** * * * * **
21172906 TTATTCAAAACAAATTAATACTAATTTATTAACA-TTCAAAAAATTAATTACAAAAGGAGATTTT
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAA--AGA-TTT
* ** * ** * *
21172970 AAAAAATAAATCTATTTACCAAACAAGTTCAAATAGTTATTG-CTATTTGAGCAATTGTTTATTT
62 AAAAAATAAATCTGTTTACTGAACTAGTTCAAATAGTTA-TGACTATTTGAATAATTATCTATTT
* * * * * * * *
21173034 AAAATTGTTATAACCATTTGGTTTGTCATAAAATAATTATTTTAGTTA--GTACAAGC
126 CAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTT--TTATCATACAAGC
** * * * *
21173090 TTAGACAGAATAAAATAATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAAAATTTTAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAA
* * ** * * * * *
21173155 AATAAATATGTTTACTGAATTAGTAAAAATAATTATGGCAATTTGAATGATTATCTATTTGAAAT
66 AATAAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAAT
* *
21173220 CATTATGAGCTTTTTGTTTTGTCATAAAA-AATTGTTTTTTATCATACAAGC
131 CGTTATGA-CCTTTTGTTTTGTCATAAAACAATTGTTTTTTATCATACAAGC
** * * * *
21173271 TTATTCAAAATAAAATAATAATAATAATAATTTATTAATATTTGAAAAATTAATTAGTAAGAGAT
1 TTATTC-----GGAATAA-AATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGAT
* * * * * *
21173336 TTAAAAAATAAATTTGTTTACCGAACTAGTTCAAATAGGTATGAATATTTGAACAATT-TACGAT
60 TTAAAAAATAAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTAT-CTAT
* * * * *
21173400 CTCAAATCGTTAAGA-TTTTTGTTTTGTCATTAAACAATTGTTTTTTATCATAGAAGC
124 TTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTATCATACAAGC
* * * * * **
21173457 TTACTCGG-TTAAAAATAATACTAATTTAATAATATTTCAAAAATTACTAAATAGGAGATTTAAA
1 TTATTCGGAAT-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAA
* * * * * ** * * *
21173521 AAATAAATGTGCTT-GTGAAATTAGTTCAAATAATTAAAACCATTAGAATAATTATCTATTTCAG
65 AAATAAATCTGTTTACTG-AACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAA
* * ** * * * * ** *
21173585 ATTGTTCTGATATTTTGTTTAT-TCAAAAAATATTTATTTCATATCTTACAAGC
129 ATCGTTATGACCTTTTGTTT-TGTCATAAAACAATTGTTTTTTATCATACAAGC
* * * * * ** *
21173638 TTATTTGGAATAAAATAATCCAAATTTAGTAACATTTGGAAAATTAATAAGCAAAAGATTTGAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTT-AAA
* * * * * * *
21173703 AAATAAATCTATTTACCGAACAAGTTCAAATAGTTATGATTATTTGAACAATTATTTATTTAAAA
65 AAATAAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAA
* * * ** * *
21173768 TCATTATGACATTTTGTTTTGACATAAAACAATTGTTTCAGT-TGATAAAAGC
130 TCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTT-TTTATCATACAAGC
* * ** * * * * *
21173820 ATA-ACAAAAATAAAATAATAATAATTTCTTAATATTTTAAAAATTAATAAGCAAGAG-TTTAAA
1 TTATTC-GGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAA
* * * * ** * * * *
21173883 AAAGTAAATTTGTTTACCGAACAAATTCAAATAGTTACAACTATTTAAACAATTATTTATTTAAA
65 AAA-TAAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAA
* *
21173948 ATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGCTTTTGT-TCATACAAGT
129 ATCGTTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTTTTATCATACAAGC
* * * * *
21174001 TTGTTTGAAATAAAATAATACTAATTTATTAATAGTCCAAAAATTAATAAGT----GATTTAAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAA
* * ** * * * *
21174062 AGTGAATCTGTTTACCAAATTAGTTCAAATAATTATCG-CCATTTCAATAATTATCTATTTCAAA
66 AATAAATCTGTTTACTGAACTAGTTCAAATAGTTAT-GACTATTTGAATAATTATCTATTTCAAA
* * * * * *
21174126 TCATTGTTACCTTTTG-TTTGATCATATAACAATTGTTTTATATCATACTAGC
130 TCGTTATGACCTTTTGTTTTG-TCATAAAACAATTGTTTTTTATCATACAAGC
* * * *
21174178 ATATTTGGAATAAAATAATACTAATTTCA-TAATCTTTCAAAAATTAATAAGTAAGAGATTT-AA
1 TTATTCGGAATAAAATAATACTAATTT-ATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAA
* * * * * * *
21174241 AAA-AAATTTGTTTACTGAACCAATTCAAATAGTTATGACTATTTGAAGAATTGTATACTTCAAA
65 AAATAAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAA
* * * * * * * * * * *
21174305 TCAATTATTTACAAAATAAACATTTTGTTCTATTATAAAATAATTATTTATGT-CCATACATGT
130 TC-GTTA-TGAC--------C-TTTTGTTTTGTCATAAAACAATTGTTT-TTTATCATACAAGC
** * * * * * *
21174368 TTATTCAAAATAAAAGAATACTAATCTAATAATATTTAAAAAATTAATAACTAAGAGATTTAAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAA
** * * * * * * * *
21174433 TTTAAATTTGTTT-GTCAAACTAGTTCAATTTGTTAAGACTATATAAATAATTATCTATTTCAAA
66 AATAAATCTGTTTACT-GAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAA
* * * * * *
21174497 TTGTTACGACATTTTGTCTTGTCATAAAACAA-T-TTTTTTAGTTCAAACTAGC
130 TCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTA--TCATACAAGC
* * * *
21174549 TTATTTGAAATAAAATAA-AATGAATTTA-TAGATATTTCAAAAATTAATAAGTAAGAGATTTAA
1 TTATTCGGAATAAAATAATACT-AATTTATTA-ATATTTCAAAAATTAATAAGTAAAAGATTTAA
* * * *
21174612 AAAATAATTCTATTTACCT-AACTAGTTCTAAT-GATTATGACTATTTGAATAATTTTCTATTTC
64 AAAATAAATCTGTTTA-CTGAACTAGTTCAAATAG-TTATGACTATTTGAATAATTATCTATTTC
* * * * * *
21174675 AAATTGTTATAACCTTTTGTTTTGTCATAAAAAAAATG-CTTTTGT--T-----C
127 AAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTATCATACAAGC
* **
21174722 --A-T---AATAAAATAA-ACAAATCCATTAATATTTCAAAAATTAATAAG----AGATTTAAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAA
* * * **
21174776 AATAAATCTTTTTA-TCAAACTAGTTCAAATAGTTATGACTAATTGAGCAATTAAT-TATTTCAA
66 AATAAATCTGTTTACT-GAACTAGTTCAAATAGTTATGACTATTTGAATAATT-ATCTATTTCAA
* * * * * * * *
21174839 ATCATTCTGACTTTTTGTTCTATTATAAAACAATAG-TTTCTATTCATACAAGC
129 ATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTA-TCATACAAGC
* * * *
21174892 TTATTCGGATTAAAATAATATTAATTTATTATTATTTCAATAATTAATAAGTTAAAA-ATTT-AA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG-TAAAAGATTTAAA
* * * *
21174955 AAATAAATATTTTTACTGAACTAGATCAAATAGTCATGACTATTTGAATAATTATCTATTTCAAA
65 AAATAAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAA
* * * * * *
21175020 TTGTTATAACCTTTTGTTTTGTCATAAAACAAATGCTTTTGT-TCATATAAGT
130 TCGTTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTTTTATCATACAAGC
* ** * *
21175072 TTGTTCATAATAAAATAA-ACAAATCTATTAATATTTCAAAAATTAATAAG----AGATTTAAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAA
* * **
21175132 AATAAATCTTTTTA-TCAAACTAGTTCAAATAGTTATGACTATTTGAGCAATTAATC-ATTTCAA
66 AATAAATCTGTTTACT-GAACTAGTTCAAATAGTTATGACTATTTGAATAATT-ATCTATTTCAA
* * * * * *
21175195 ATTAC-TT-TGACTTTTTGTTCTATTATAAAACAATAG-TTTCTATTCATACAAGC
129 A-T-CGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTA-TCATACAAGC
* * * * *
21175248 TTATTCGGATTAAAATAATATTAATTTATTATTATTTCAACAATTAATAAGTTAAAA-ATTTTAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG-TAAAAGATTTAAA
* * *
21175312 AAATAAATATGTTTACTGAACTAGATCAAATAGTCATGACTATTTGAATAATTATCTATTTCAAA
65 AAATAAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAA
* * * * **** *
21175377 TTGTTATGA--TTTTTTTTTGTCATAAAAAAATTATTTCAGGTCATATAAGC
130 TCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTATCATACAAGC
* * * * * * *
21175427 TTATTCGAAATAAAATAATACCAAGTTGTTAATATTCCAAAAATTAATAATTAAGAGATTTAAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAA
* ** * * * * *
21175492 AATGAAA-CTATTTACAAAACAAGTTTAAATAATTATGACTATTT-AGACAATTATCTATTTAGA
66 AAT-AAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGA-ATAATTATCTATTT-CA
* * ** * *
21175555 AAT-GCTATAACCTTTTGTTTTGTCATAAAA-AGAGTTCATCTGT-TCATACAAGC
128 AATCGTTATGACCTTTTGTTTTGTCATAAAACA-A-TTGTTTTTTATCATACAAGC
* * * *
21175608 CTATTTCAG-ATAAAATAATACAAATTTATTAATA-TT-AAGACAATTAATAATTAAAAGATTTA
1 TTA-TTCGGAATAAAATAATACTAATTTATTAATATTTCAA-A-AATTAATAAGTAAAAGATTTA
** * * * * * * *
21175670 AAAAATAAATCCATTCAC-CACACAAGTTTAAATCGTTATGACTATTTG-------AGC-A--AC
63 AAAAATAAATCTGTTTACTGA-ACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
** * * * *
21175724 AAATTATTATGACTTTTTTTTTTGTCATAAAACAATT-ATTTTTATTCATATAAGC
127 AAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTA-TCATACAAGC
* * * ** * * *
21175779 TTATTCAGATTAAAATAATATTAATTTATTAATATTTTGACAATTAATTAGTAAAAGATTTAGAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAA
* * * * *
21175844 AATAAATATGTTTACTGAACAATTTCAAATAGTCATGACTATTTTAATAATTATCTATTTCAAAT
66 AATAAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAAT
** * * * * * *
21175909 TATTGTGATCTTTTATTTTGTAATAAAACAATTGTTTCAATTAACAT--AAGC
131 CGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTT--TTTATCATACAAGC
* * * * * **
21175960 TTATT-TGAAGTAAAATAATACTAATTTATTAATATTCCAAAAATTAATGATTAAGAGAACTAGA
1 TTATTCGGAA-TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTA-A
* * * * *
21176024 AAAATAAATCTATTTACTGAA-TAAGTTCAAAGAGTTTTGACTATCTGAACAATTATCTATTTCA
64 AAAATAAATCTGTTTACTGAACT-AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCA
* * * * * * * *
21176088 AAACATTATGACCTTTTCTTTTGTCAGAAAACAAATG-GTTCTATTCATCCAAGC
128 AATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTA-TCATACAAGC
* * * * *
21176142 TTATTTC-GAATAAAATAATA-TAAATTAATTAATATTCCAAAAGTTAATAAG-AAAAAATTTTA
1 TTA-TTCGGAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAA
* * * *
21176204 AAAATAAATTTGTTTACTAAAC-ACATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
64 AAAATAAATCTGTTTACTGAACTA-GTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCA
* * *
21176268 AATCATTATGACCATTTGTTTTGTCAT-AAACTAATTGTTTCTGT-TCATACAAGC
128 AATCGTTATGACCTTTTGTTTTGTCATAAAAC-AATTGTTT-TTTATCATACAAGC
* * * * *
21176322 TTATTTGGAATAAAATAATACTAATTTATTAAAATTCCAAAAGTTAATAAGAAAAAGATTTAAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAA
* * * * *
21176387 AATAAATCTTTTTA-TAGAGCGAGTTCAAATAGTTATGACTATTTGAATAATTATTTGTTTCAAA
66 AATAAATCTGTTTACT-GAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAA
* * * * *
21176451 TTGTTATGATCC-ATTGTTTTGTCATAAAACAATTG-TTTCTATTCATAAAAGT
130 TCGTTATGA-CCTTTTGTTTTGTCATAAAACAATTGTTTTTTA-TCATACAAGC
** * * *
21176503 TTATTTAGAATAAAATAATATTAATTTATTAATA-TTCTAAAAATTAATAAGTTAGAGATTTAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAAAGATTTAAA
* * * * * ** * *
21176567 AAATAAATTTGTTTATTGAACAAGTTTAAATAGTCATTTCTATTTGAACT-ATCATCTATTTCGA
65 AAATAAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAA-TAATTATCTATTTCAA
* * * * * * **
21176631 A-CTGTCATGACATTTTGTTTCGTCATAAAATAATTG--GTAT-TCATACAAAA
129 ATC-GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTATCATACAAGC
* * * * * **
21176681 TTATTCAGAATAACTGGTATTCATACAAAATTATTCAAAATAAAAT-AATACCAATTTATTACTA
1 TTATTCGGAATAA-----AATAATACTAATTTATT---AAT-ATTTCAA-A--AA-TTA--A-TA
** * * * * *
21176745 TTTCAAAA-ATTAATAAAGATTTAAAAATAAATGTGTTTGCTAAACTAGTTCAAATAGTTAAGCC
50 AGT-AAAAGATT--T----A---AAAAATAAATCTGTTTACTGAACTAGTTCAAATAGTTATGAC
** * * * * * *
21176809 TATGAGAACAATTATCTATTTCAAATTGTTCTGACCTTTTGTTTAGACATAAAATAATTGTTTTA
105 TATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTT-
* *
21176874 GT-TCATACATGC
169 TTATCATACAAGC
** * * * *
21176886 TTATTCAAAATAAAATAATACTAATTTATCAACATTT-AGAAAATTAATAAGCAAGAA-ATTAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCA-AAAATTAATAAGTAA-AAGATT-TA
* * * * * *
21176949 AAAAATAAATCTGTTTACTGAACAAGTTCAAATAGTT-TGACTTTTTGAACAACTATTTATTTAA
63 AAAAATAAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCA
* * * * ** *** *
21177013 AATTGTTATGATCTTTTATTTTTATTGTAAAACAATTGGTTCAGTA-CATAAAAGC
128 AATCGTTATGACCTTTT-GTTTTGTCATAAAACAATT-GTTTTTTATCATACAAGC
* ** * *
21177068 TTATCCAAAATAAAATAATA-TTACTTATTAATATTTCAAA
1 TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAA
21177108 TTTTGATAGT
Statistics
Matches: 3388, Mismatches: 767, Indels: 455
0.73 0.17 0.10
Matches are distributed among these distances:
160 1 0.00
162 87 0.03
163 3 0.00
165 1 0.00
166 24 0.01
167 13 0.00
169 4 0.00
170 13 0.00
171 111 0.03
172 5 0.00
173 4 0.00
174 7 0.00
175 5 0.00
176 117 0.03
177 185 0.05
178 41 0.01
179 223 0.07
180 521 0.15
181 1032 0.30
182 378 0.11
183 29 0.01
184 134 0.04
185 23 0.01
186 38 0.01
187 101 0.03
188 1 0.00
189 7 0.00
190 86 0.03
191 12 0.00
192 48 0.01
193 9 0.00
194 4 0.00
195 1 0.00
196 4 0.00
197 3 0.00
199 1 0.00
200 12 0.00
202 79 0.02
204 1 0.00
205 20 0.01
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.40
Consensus pattern (181 bp):
TTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAA
AATAAATCTGTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAAT
CGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTTATCATACAAGC
Found at i:21173324 original size:187 final size:185
Alignment explanation
Indices: 21173098--21173528 Score: 446
Period size: 187 Copynumber: 2.3 Consensus size: 185
21173088 GCTTAGACAG
* * *
21173098 AATAAAATAATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAAAATTTTAAAAATAAATA
1 AATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAGTAAAAAATTTAAAAAATAAATA
* * * * ** * * *
21173163 TGTTTACTGAATTAGTAAAAATAATTATGGCA-ATTTGAATGA-TTATCTATTTGAAATCATTAT
66 TGTTTACCGAACTAGTAAAAATAAGTAT-GAATATTTGAACAATTTA-CGATCTCAAATCATTA-
*
21173226 GAGCTTTTTGTTTTGTCA-TAAAAAATTGTTTTTTATCATACAAGCTTATTCAAAATAA
128 -AGATTTTTGTTTTGTCATTAAAAAATTGTTTTTTATCATACAAGCTTATTCAAAATAA
* * * *
21173284 AATAATAATAATAATAATTTATTAATATTTGAAAAATTAATTAGTAAGAGATTTAAAAAATAAAT
1 AATAA-AATAATAATAATTTATTAATATTTCAAAAATTAATAAGTAAAAAATTTAAAAAATAAAT
* ** * *
21173349 TTGTTTACCGAACTAGTTCAAATAGGTATGAATATTTGAACAATTTACGATCTCAAATCGTTAAG
65 ATGTTTACCGAACTAGTAAAAATAAGTATGAATATTTGAACAATTTACGATCTCAAATCATTAAG
* * * **
21173414 ATTTTTGTTTTGTCATTAAACAATTGTTTTTTATCATAGAAGCTTACTC--GGT--
130 ATTTTTGTTTTGTCATTAAAAAATTGTTTTTTATCATACAAGCTTATTCAAAATAA
* * * * * ** *
21173466 TA-AAAATAATACTAATTTAATAATATTTCAAAAATTACTAAATAGGAGATTTAAAAAATAAAT
1 AATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAGTAAAAAATTTAAAAAATAAAT
21173529 GTGCTTGTGA
Statistics
Matches: 206, Mismatches: 35, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
180 52 0.25
181 2 0.01
182 1 0.00
184 1 0.00
185 16 0.08
186 37 0.18
187 94 0.46
188 3 0.01
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (185 bp):
AATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAGTAAAAAATTTAAAAAATAAATA
TGTTTACCGAACTAGTAAAAATAAGTATGAATATTTGAACAATTTACGATCTCAAATCATTAAGA
TTTTTGTTTTGTCATTAAAAAATTGTTTTTTATCATACAAGCTTATTCAAAATAA
Found at i:21173966 original size:363 final size:361
Alignment explanation
Indices: 21172631--21174708 Score: 1305
Period size: 367 Copynumber: 5.7 Consensus size: 361
21172621 GTGTTGAACT
* * * ** * * * *
21172631 AGTTCCAATAGTTAAGACTATATGAATGATTATCTATTTCAAA-CTGTTATAACATTTTGCTTTG
1 AGTTCAAATAGTTATG-CTATTTGAACAATTATCTATTTAAAATC-ATTATGACATTTTGTTTTG
* * ** ** * * *
21172695 TCATAAAACAATTGTTTT-GT-TCGTACAAGTTTATTTGGATTTAAATAATACTAA-TTCAATAA
64 ACATAAAACAATTGTTTTAGTATCATACAAGCATAACTAGAATAAAATAATACTAATTTC-ATAA
* * *
21172757 TATTTTAAAAATTAATATGTAAGAGATTTAAAAAATAAATTTGTTTA-TCGAATAAGTTCAAATG
128 TATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACT-GAACAAGTTCAAATA
* * * * *
21172821 GTTA-AGACTATTTGAATAATTATCTATTTCAAATCGTTTTGGCCTTTTGTTTGGTTATAAAACA
192 GTTATA-ACTATTTAAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAA-A
* ** * * * * *
21172885 ATTGTTTCAGCTCATACAAGCTTATTCAAAACAAATTAATACTAATTTATTAACATTCAAAAAAT
255 ATTTTTTCATATCATACAAGCTTATTTAAAATAAAATAATACAAATTTATTAACATTCGAAAAAT
*
21172950 TAATTA-CAAAAGGAGATTTTAAAAAATAAATCTATTTACCAAACA
320 TAATAAGC-AAA--AGA-TTTAAAAAATAAATCTATTTACCAAACA
* * * ** * *
21172995 AGTTCAAATAGTTATTGCTATTTGAGCAATTGTTTATTTAAAATTGTTATAACCA-TTTGGTTTG
1 AGTTCAAATAGTTA-TGCTATTTGAACAATTATCTATTTAAAATCATTATGA-CATTTTGTTTTG
* * * *
21173059 TCATAAAATAATTATTTTAGT-T-AGTACAAGCTTAGAC-AGAATAAAATAATACTAATTT-ATT
64 ACATAAAACAATTGTTTTAGTATCA-TACAAGCATA-ACTAGAATAAAATAATACTAATTTCA-T
* * * * ** **
21173120 AATATTTCT-AAAATTAATAAGTAAAAAATTTTAAAAATAAATATGTTTACTGAATTAGTAAAAA
126 AATATTT-TAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAA
* ** * * * * * *
21173184 TAATTATGGCAATTTGAATGATTATCTATTTGAAATCATTATGAGCTTTTTGTTTTGTCATAAAA
190 TAGTTATAACTATTTAAATAATTATCTATTTCAAATCGTTATGA-CCTTTTGTTTTGTCATAAAA
* *
21173249 AATTGTTTT-TTATCATACAAGCTTATTCAAAATAAAATAATAATAATA-ATAATTTATTAATAT
254 AATT-TTTTCATATCATACAAGCTTATT-----TAAAATAA-AATAATACA-AATTTATTAACAT
* * * * * * * *
21173312 TTGAAAAATTAATTAGTAAGAGATTTAAAAAATAAATTTGTTTACCGAACT
311 TCGAAAAATTAATAAGCAAAAGATTTAAAAAATAAATCTATTTACCAAACA
* * * * * * * *
21173363 AGTTCAAATAGGTATGAATATTTGAACAATT-TACGATCTCAAATCGTTAAGA-TTTTTGTTTTG
1 AGTTCAAATAGTTATG-CTATTTGAACAATTAT-CTATTTAAAATCATTATGACATTTTGTTTTG
* * * * * * ** *
21173426 TCATTAAACAATTGTTTT-TTATCATAGAAGC-TTACTCGGTTAAAAATAATACTAATTTAATAA
64 ACATAAAACAATTGTTTTAGTATCATACAAGCATAACTAGAAT-AAAATAATACTAATTTCATAA
* * * * * * *
21173489 TATTTCAAAAATTACTAAATAGGAGATTTAAAAAATAAATGTGCTT-GTGAA-ATTAGTTCAAAT
128 TATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTGAACA--AGTTCAAAT
* * * * * * **
21173552 AATTAAAACCA-TTAGAATAATTATCTATTTCAGATTGTTCTGATATTTTGTTTAT-TCA-AAAA
191 AGTTATAACTATTTA-AATAATTATCTATTTCAAATCGTTATGACCTTTTGTTT-TGTCATAAAA
* ** * * * *
21173614 ATATTTATTTCATATCTTACAAGCTTATTTGGAATAAAATAATCCAAATTTAGTAACATTTGGAA
254 A-ATTT-TTTCATATCATACAAGCTTATTTAAAATAAAATAATACAAATTTATTAACATTCGAAA
*
21173679 AATTAATAAGCAAAAGATTTGAAAAAATAAATCTATTTACCGAACA
317 AATTAATAAGCAAAAGATTT-AAAAAATAAATCTATTTACCAAACA
* *
21173725 AGTTCAAATAGTTATGATTATTTGAACAATTATTTATTTAAAATCATTATGACATTTTGTTTTGA
1 AGTTCAAATAGTTATG-CTATTTGAACAATTATCTATTTAAAATCATTATGACATTTTGTTTTGA
* * * * * * *
21173790 CATAAAACAATTGTTTCAGT-TGATAAAAGCATAACAAAAATAAAATAATAATAATTTCTTAATA
65 CATAAAACAATTGTTTTAGTATCATACAAGCATAACTAGAATAAAATAATACTAATTTCATAATA
* * *
21173854 TTTTAAAAATTAATAAGCAAGAG-TTTAAAAAAGTAAATTTGTTTACCGAACAAATTCAAATAGT
130 TTTTAAAAATTAATAAGTAAGAGATTTAAAAAA-TAAATTTGTTTACTGAACAAGTTCAAATAGT
* * * *
21173918 TACAACTATTTAAACAATTATTTATTTAAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATT
194 TATAACTATTTAAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAA-AATT
* * * * * * * *
21173983 GCTTTT-GT-TCATACAAGTTTGTTTGAAATAAAATAATACTAATTTATTAATAGTCCAAAAATT
258 --TTTTCATATCATACAAGCTTATTTAAAATAAAATAATACAAATTTATTAACATTCGAAAAATT
* * * * **
21174046 AATAAG----TGATTTAAAAAGTGAATCTGTTTACCAAATT
321 AATAAGCAAAAGATTTAAAAAATAAATCTATTTACCAAACA
* * * * * * * *
21174083 AGTTCAAATAATTATCGCCATTTCAATAATTATCTATTTCAAATCATTGTTACCTTTTG-TTTGA
1 AGTTCAAATAGTTAT-GCTATTTGAACAATTATCTATTTAAAATCATTATGACATTTTGTTTTGA
* * ** *
21174147 TCATATAACAATTGTTTTA-TATCATACTAGCATATTTGGAATAAAATAATACTAATTTCATAAT
65 -CATAAAACAATTGTTTTAGTATCATACAAGCATAACTAGAATAAAATAATACTAATTTCATAAT
* *
21174211 CTTTCAAAAATTAATAAGTAAGAGATTT-AAAAA-AAATTTGTTTACTGAACCAA-TTCAAATAG
129 ATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTGAA-CAAGTTCAAATAG
* * * * * * * * * *
21174273 TTATGACTATTTGAAGAATTGTATACTTCAAATCAATTATTTACAAAATAAACATTTTGTTCTAT
193 TTATAACTATTTAAATAATTATCTATTTCAAATC-GTTA-TGAC--------C-TTTTGTTTTGT
* * * * * * * * * * *
21174338 TATAAAATAATTATTT-ATGTCCATACATGTTTATTCAAAATAAAAGAATACTAATCTAATAATA
247 CATAAAA-AATTTTTTCATAT-CATACAAGCTTATTTAAAATAAAATAATACAAATTTATTAACA
** * ** * * ** *
21174402 TTTAAAAAATTAATAA-CTAAGAGATTTAAAATTTAAATTTGTTTGTCAAACT
310 TTCGAAAAATTAATAAGC-AAAAGATTTAAAAAATAAATCTATTTACCAAACA
* * * * * * * ** * * *
21174454 AGTTCAATTTGTTAAGACTATATAAATAATTATCTATTTCAAATTGTTACGACATTTTGTCTTGT
1 AGTTCAAATAGTTATG-CTATTTGAACAATTATCTATTTAAAATCATTATGACATTTTGTTTTGA
* * * * * * *
21174519 CATAAAACAATTTTTTTAGT-TCAAACTAGC-TTATTTGAAATAAAATAA-AATGAATTT-ATAG
65 CATAAAACAATTGTTTTAGTATCATACAAGCATAACTAG-AATAAAATAATACT-AATTTCATA-
* * * *
21174580 ATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAAT-AATTCTATTTACCT-AACTAGTTCTAA
127 ATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATT-TGTTTA-CTGAACAAGTTCAAA
* * * * *
21174643 T-GATTATGACTATTTGAATAATTTTCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAA
190 TAG-TTATAACTATTTAAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAA
21174707 AA
254 AA
21174709 AATGCTTTTG
Statistics
Matches: 1347, Mismatches: 280, Indels: 177
0.75 0.16 0.10
Matches are distributed among these distances:
356 50 0.04
357 12 0.01
358 144 0.11
359 9 0.01
361 41 0.03
362 96 0.07
363 180 0.13
364 83 0.06
365 152 0.11
366 54 0.04
367 209 0.16
368 63 0.05
369 3 0.00
370 16 0.01
371 172 0.13
372 19 0.01
373 42 0.03
374 2 0.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (361 bp):
AGTTCAAATAGTTATGCTATTTGAACAATTATCTATTTAAAATCATTATGACATTTTGTTTTGAC
ATAAAACAATTGTTTTAGTATCATACAAGCATAACTAGAATAAAATAATACTAATTTCATAATAT
TTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAATAGTTA
TAACTATTTAAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAAAATTTTT
TCATATCATACAAGCTTATTTAAAATAAAATAATACAAATTTATTAACATTCGAAAAATTAATAA
GCAAAAGATTTAAAAAATAAATCTATTTACCAAACA
Found at i:21174333 original size:911 final size:903
Alignment explanation
Indices: 21167329--21176574 Score: 2878
Period size: 895 Copynumber: 10.4 Consensus size: 903
21167319 CGAATCAATT
* ** ** * *
21167329 TAAATAATTATATATTTCAAATCATTATTACCTTTTGTCTTATCATAAAACAATTCTTTTTCA--
1 TAAATAATTATCTATTTCAAATTGTTACGACATTTTGTCTTGTCATAAAACAA-T-TTTTTCAGT
* * * * *
21167392 ACATACAAGCTTATTTGAAATAAAATAATACTAACTTATTAATATTTCAAGAA-T--T-AGTAAG
64 TCATACAAGCTTATTTGGAATAAAATAATACAAATTTA-TAATATTTCAAAAATTAATAAGTAAG
* * * * * *
21167453 AGATTT-AAAAATAAATTTATTTATCGAA-ATAATTTAAATAGTTGTGACTATTTGAATAGTTAT
128 AGATTTAAAAAATAAATCTATTTACCGAACA-AGTTCAAAT-GTTATGACTATTTGAATAATTAT
* * * * * * * * * * **
21167516 CTATTTCAAATTGTTATAACCTTTT-TTCTATCATAAAATAATTATTTCTGTTCATACAAGTTTA
191 TTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGCTCATAAAAGCATA
** * * * * * * * * *
21167580 TTTAGAATAAAATAATACTAATTTACTAATATTCTAAAAATTCATAAC-TAA-GAGATTTAAAAA
256 TACAAAACAAAATAATAATAATTTATTAACATTCAAAAAATTAATTACAAAAGGAGATTTAAAAA
* * ** * * * * * * *
21167643 ATAAATC-GTTTGCTGAACCAATTC-AACAGTTA-AGACTATTTGAATAGTTATCTATTTCAAAT
321 ATAAATCTATTTACCAAACAAATTCAAATAGTTACA-ACTATTTAAACAATTATTTATTTAAAAT
* * * ***
21167705 CGTTATAACC-TTT--TTCTATCATAAAACAATTATTTTAACTTA-TACAAGTTTA-TTTGAAAT
385 CGTTATAACCATTTGGTT-TGTCATAAAACAATTATTTT-AGTTAGTACAAGCTTAGACAG-AAT
* * * * * * * * * *
21167765 AAAATAAAACTAATTTGTTAATATTTCAAAATTTTATAAGTAAGAGATTTAAAAAATAATTCTAT
447 AAAATAATACTAATTTATTAATAGTCCAAAAATTAATAAGT-A-A-ATTTTAAAAATAAATATGT
* ** * * * *
21167830 TTACCAAATCAGTTCAAATAATTATAATAATTATAACTATTTGAACAATTATTTATTTCAAATCA
509 TTACC-AA--A-TT--AGTAA--A-AATAATTATCGCAATTTCAATAATTATCTATTTCAAATCA
* * * ** * *
21167895 TTATTA--CTTTTGTTTTGTCATAAAAAATTGTTTT-TGTTCATATAAGTTTGTT-CAAAATAA-
565 TTATGAGCCTTTTGTTTTGTCATAAAAAATTGTTTTAT-ATCATACAAGCATATTATAAAATAAT
* * *
21167955 AATAATACTAATTTATTAATATTT-AGAAAATTAATCAGTAAGAGA--TAAAAAATAAA-TCGTT
629 AATAATAATAATTTATTAATATTTCA-AAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTT
* * * * * * * * * * * *
21168016 TACCAAACCATTTCATATAGTTTTGACTATATGAATAA-TTATCTATTTCAAATCATTATAACTT
693 TACCGAACCAATTCAAATAGGTATGAATATTTGAACAATTTA-CGATCTCAAATCGTTA-AAATT
* * ** * ** * ** * *** *
21168080 TTTGTT-TGTCAT-CAA-AATTGGTTCTGTTTATACTATTTTATTTGGAATAAAATAATACTAAT
756 TTTGTTCTATCATAAAACAATTATTTATGTCCATACAAGCTTACTCAAAATAAAAGAATACTAAT
* ** * ** * * * * * ** * *
21168142 TTAATAATATTTTGAAACTTAATAACCAAGAAAATTAAAAGATAAGTCTAATTG-CTGAACGAGT
821 CTAATAATATTTAAAAAATTAATAAATAAGAGATTTAAAAAATAAATGTGCTTGTC-AAACTAGT
* * * *
21168206 TCAAATAGTTAAGACTACA
885 TCAAATAATTAAAACCATA
* * ** * *
21168225 TGAATGATTATCTATTTCAAATCATTATGACCA-TTTGTTTTGTCATAAAACAATTTTTT-AGTT
1 TAAATAATTATCTATTTCAAATTGTTACGA-CATTTTGTCTTGTCATAAAACAATTTTTTCAGTT
* * * *
21168288 CGTATAAGCTTATTTGGATTAAAATAATACAAATTTAATAATATTTTAAAAATTAATAAGTAAGA
65 CATACAAGCTTATTTGGAATAAAATAATACAAATTT-ATAATATTTCAAAAATTAATAAGTAAGA
* * * * * * * * * *
21168353 GATTT-TAAAA-AAATTTGTTTATCGAACTAGTTTATATGATTAAT-ACTATTAGAACAATTATC
129 GATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATG-TT-ATGACTATTTGAATAATTATT
* * * ** ** *
21168415 TATTTCAAATCGTTTTGACCTTTTGTTTAGTCATAAAGCAATTGTTTCAATTCATGCAAGCTTAT
192 TATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGCTCATAAAAGCATAT
* * * * * *
21168480 TCAGAATAAATTAATACTAATTTATTAACATTC-AAAAATTAA-GA-AGAAA-GAGATTTAAGAA
257 ACAAAACAAAATAATAATAATTTATTAACATTCAAAAAATTAATTACA-AAAGGAGATTTAA-AA
* * * ** * * * *
21168541 AATAAGTCTATTTATCGAACAAGCTCAAATAGTTATAACTATTTGAACAATTGTCTATTTAAAAT
320 AATAAATCTATTTACCAAACAAATTCAAATAGTTACAACTATTTAAACAATTATTTATTTAAAAT
** * * * * * ** * * * *
21168606 CACTAT-ACC-TTTTGTTTTTCATAAAACAATT-GTTTCGTTAATATGAGTTTATA-TGATACAA
385 CGTTATAACCATTTGGTTTGTCATAAAACAATTATTTTAGTTAGTACAAGCTTAGACAGA-ATAA
* * * * *
21168667 AATTAATAC-AATTTATTAATATTTC-TAAATTAACAAGTAAGAGATTTTAAAAATAAAT-TTTT
449 AA-TAATACTAATTTATTAATAGTCCAAAAATTAATAAGT-A-A-ATTTTAAAAATAAATATGTT
* * * * * * * *
21168729 TATCAAATCAAT-TAAATAATTAT-GCAATTTGAATAATTATCTATTCCAATAGCA--AT-AACC
510 TACCAAATTAGTAAAAATAATTATCGCAATTTCAATAATTATCTATTTCAA-ATCATTATGAGCC
* * * * * * ** *
21168789 ATTTGTTTTGTTATCAAACAATTATTTTTTTATCATACAAGCTTATT-CGAAATAA-AATAATAC
574 TTTTGTTTTGTCAT-AAAAAATT-GTTTTATATCATACAAGCATATTATAAAATAATAATAATAA
* *
21168852 TAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTATCGAACC
637 TAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACCGAACC
* * ** * * * * * ** *
21168917 AATTCAAATAGTTA-CAATTATAAGAATAA-TTATCTATTTCAAATCATTCTAACCTATT-TT-T
702 AATTCAAATAGGTATGAA-TATTTGAACAATTTA-CGATCTCAAATCGTT-AAAATTTTTGTTCT
* * * * * * * * *
21168978 AGTCATAAAA-AATTTGTTTCATAT-CATACAATCTTATTCAGAATAAAATAATCCTAATATATT
764 A-TCATAAAACAA-TTATTT-ATGTCCATACAAGCTTACTCAAAATAAAAGAATACTAATCTAAT
* * ** * * ** ** * *
21169041 AACATTCAAAAAATTAATAAGCAAGAGATTTGAAAAATAAATCTATTTACCGAA-TAAGCTCAAA
826 AATATTTAAAAAATTAATAAATAAGAGATTTAAAAAATAAATGTGCTTGTCAAACT-AGTTCAAA
* ** * *
21169105 TAGTTATGACTATT
890 TAATTAAAACCATA
* ** * * * ** *
21169119 TAAATCAATTAAT-TATTTAAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGCTTCAAT
1 TAAAT-AATT-ATCTATTTCAAATTGTTACGACATTTTGTCTTGTCATAAAACAATTTTTTCAGT
* * **** * * * **
21169183 TCATAAAAGGTTATCCAAAATAAAATAATACTAATTTTTTAATATTTTAAAAATTAATAACCAAG
64 TCATACAAGCTTATTTGGAATAAAATAATAC-AAATTTATAATATTTCAAAAATTAATAAGTAAG
*** * * * *
21169248 AGATTTAAAAAAATAAATGC-ATTTTTTGAACAAATTCAAATAGTTACGACTATTTGAACAATTG
128 AGATTT-AAAAAATAAAT-CTATTTACCGAACAAGTTCAAAT-GTTATGACTATTTGAATAATTA
* * * ** * * ** * *
21169312 TATATTTAAAATCATTATGATATTTTGTTTTATCATAAAAAAATTGTTTCATTTCATTAAAGCTT
190 TTTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGCTCATAAAAGCAT
*** * * * *
21169377 ATTTGAAATAAAATAATAATAATTTATTAATATTCCAAAAATTAA-T----AA-GTGATTTAAAA
255 ATACAAAACAAAATAATAATAATTTATTAACATTCAAAAAATTAATTACAAAAGGAGATTTAAAA
* * * * * *** * * * *
21169436 AGTGAATTTGTTTACCAAATC-AATTCAAATAATTATGGCTATTTCAACAATTATGTGTTTCAAA
320 AATAAATCTATTTACCAAA-CAAATTCAAATAGTTACAACTATTTAAACAATTATTTATTTAAAA
* * * ***
21169500 TCGTTATGAA-CA-TTGTTTTGTCATAAAACAATTGTTTTTCA-TCA-TACAAGCTT-GTTTGGA
384 TCGTTAT-AACCATTTGGTTTGTCATAAAACAATT-ATTTT-AGTTAGTACAAGCTTAG-ACAGA
* * * * *
21169560 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATGAGTAAGAGATTTAAAAAATAAATTT
445 ATAAAATAATACTAATTTATTAATAGTCCAAAAATTAATAAGT-A-A-ATTTTAAAAATAAATAT
* * * * *
21169625 GTTTATC-AA--AG------T-ATT-TC-CTATTTGAATAATTACCTATTTCAAATCATTAT-AA
507 GTTTACCAAATTAGTAAAAATAATTATCGCAATTTCAATAATTATCTATTTCAAATCATTATGAG
* * * * * *
21169677 CCTTTTCTTCTATTATAAATAAA-TGTTTTAGT-TCATACAAGCTTATT-CAAAATAA-AATAAT
572 CCTTTTGTTTTGTCATAAA-AAATTGTTTTA-TATCATACAAGCATATTATAAAATAATAATAAT
* * * * * ** ***
21169738 AATATTTTAATAATATTAT-GAAAATTAATAACTAAGGGATTTAAAAAATAAATCCGTTTGTTGA
635 AATAATTTATTAATATT-TCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACCGA
* * * * * * * * * *
21169802 AGCAGTTTAAATAGTTAAGACTATATGAACAA-TTATCTATTTCAAATTGTTATGAAA-TTTTGT
699 ACCAATTCAAATAGGTATGAATATTTGAACAATTTA-CGATCTCAAATCGTTA--AAATTTTTGT
* * * * * ** * ** * *
21169865 TTTATCATAAAACAATTGTTT-TAGTTCATAAAAGCTTATTTGAAATAAAATAATAAAAATTTAT
761 TCTATCATAAAACAATTATTTAT-GTCCATACAAGCTTACTCAAAATAAAAGAATACTAATCTAA
** * * * * * * * * *
21169929 TAATATTCCAAAAA-T--T-AATAAGTGATTTAAAAAGTGAATCTGTTTACTGAATC-ATTTCAA
825 TAATATTTAAAAAATTAATAAATAAGAGATTTAAAAAATAAATGTGCTT-GTCAAACTAGTTCAA
*** *
21169989 ATAATTATGGCCATT
889 ATAATTAAAACCATA
* * * ** ** * **
21170004 TCAACATTTATCTATTTCAAATCATTATTACCA-TTTGT-ATGTCATATGACAAATGTTTTT--G
1 TAAATAATTATCTATTTCAAATTGTTACGA-CATTTTGTCTTGTCATAAAAC-AAT-TTTTTCAG
* * ** * * * *
21170065 ATCATTCAAGCTTATTCAGAATACAATAATACTAATTTATTAATCTTTTAAAAATTAATAAG---
63 TTCATACAAGCTTATTTGGAATAAAATAATACAAATTTA-TAATATTTCAAAAATTAATAAGTAA
* * *** * * * * *
21170127 CA-ATTTAAAAAATAAATCTGTTTATTAAACTAGTTCAAATAATTATAACTATTTGAACAATTGT
127 GAGATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAAT-GTTATGACTATTTGAATAATTAT
* * ** * * * * * * * * * * *
21170191 ATACTTCAAATTTTTATAACCATTTGTTCTATCACAAAATAATTATTTCTGTTCATATAAGCTTA
191 TTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGCTCATAAAAGCATA
**** * * * * * * * * *
21170256 TTTGGAATAAAATAATACTAATATAATAATATT-ATGAAAATTAATAAC-TAA-GAGAATT-AAA
256 TACAAAACAAAATAATAATAATTTATTAACATTCA-AAAAATTAATTACAAAAGGAGATTTAAAA
* * ** * * * * *
21170317 AATAAATTTGTTTGACC-AATTAGTTCAAATATTTA-AGACTATATGAACAATTATCTATTTCAA
320 AATAAATCTATTT-ACCAAACAAATTCAAATAGTTACA-ACTATTTAAACAATTATTTATTT-AA
* * * * * * *
21170380 AAT-GTTATGACCTTTTGCTTTGTCATAAAACAA-AATTTTAATTCA-TACTAGCGGATTCGA-A
382 AATCGTTATAACCATTTGGTTTGTCATAAAACAATTATTTTAGTT-AGTACAAGC---TTAGACA
* * *
21170441 -AA-AAAATAA-AATGAATTTATTAATATTTCAAAAATTAATAAGTAAGATATTTAAAAA-AATA
443 GAATAAAATAATACT-AATTTATTAATAGTCCAAAAATTAATAAGTAA-AT-TTTAAAAATAA-A
* ** * ** * * * * * *
21170502 TATTTTTGTTTACCTAACCAATTCAAATAATTAT-GACTATTTAAACAATTATCTATTCCGAGTC
504 TA----TGTTTACCAAATTAGTAAAAATAATTATCG-CAATTTCAATAATTATCTATTTCAAATC
* * * * ** * *
21170566 ATTAT-AACCTTTTGTTTTGTCATAAAACAAATGTTTT-TGTTCATATAAGTTTGTT-TGAAATA
564 ATTATGAGCCTTTTGTTTTGTCATAAAA-AATTGTTTTAT-ATCATACAAGCATATTATAAAATA
* * * * * *
21170628 A-AGTAATACTAATCTATTAATATTTCAAAAA-T--TAA-TAAGAGATTTAAAAAATTAATCT-A
627 ATAATAATAATAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGT
* * * * * * * * ** * ** ** *
21170687 TTATCAAACCAGTTCAAATAGTTATCACTATTTG-GCAAATTATTTATTTCAAATTTTTTTGACT
692 TTACCGAACCAATTCAAATAGGTATGAATATTTGAACAATTTA-CGATCTCAAA-TCGTTAAAAT
* * * * * * *** * * * * *
21170751 TTTTGTCCTATTATAAAACATTTGTTTCTATTTGTACATGCTTATTCATATTAAAATAATACTAA
755 TTTTGTTCTATCATAAAACAATTATTTATGTCCATACAAGCTTACTCAAAATAAAAGAATACTAA
* * ** * * * * * ** **
21170816 TTTAGTAATATTTTGACAATTAATAAGTAA-AAATTTTTAAAAATAAATATATTTACCAAACTAG
820 TCTAATAATATTTAAAAAATTAATAAATAAGAGA-TTTAAAAAATAAATGTGCTTGTCAAACTAG
* * * ** ** *
21170880 TCCAAATAGTCATGATTATT
884 TTCAAATAATTAAAACCATA
* * * ** * * * *
21170900 TGAATAATTATCTATTTCAAATTATTATGACCCTTTCTTTTGTCATAAAA-GATTTGTTTCGGTT
1 TAAATAATTATCTATTTCAAATTGTTACGACATTTTGTCTTGTCATAAAACAATTT-TTTCAGTT
* * * * * *
21170964 CATATAAGTTTATTCGAAATAAAATAATATC-AATTTATTAATATTCCAAAAATTAATAATTAAG
65 CATACAAGCTTATTTGGAATAAAATAATA-CAAATTTA-TAATATTTCAAAAATTAATAAGTAAG
** * * * *
21171028 AGATTTAAAAAA-AGAATCTATTTACTAAATAAGTTTAAATAATTATGACTGTTTGAATAATTAT
128 AGATTTAAAAAATA-AATCTATTTACCGAACAAGTTCAAAT-GTTATGACTATTTGAATAATTAT
* * * * * * * * ** *
21171092 CTATTTGAAATTCGCTATAACATTTTGTTTTGACATAAAATAATTTTTTTTG-T--TCAAA-C-T
191 TTATTTCAAA-TCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGCTCATAAAAGCAT
**** * * * * * * **
21171152 ATTTTGAATAAAATAATACA-AAATTAGTAATACT-AAGAAAATTAATAAGTAAA--AGATTTAA
255 ATACAAAACAAAATAATA-ATAATTTATTAACATTCAA-AAAATTAATTACAAAAGGAGATTTAA
* * * * * ** * **
21171213 AAAATAAATTTGTTTATCGAACAAGTTCAAAT-GTTATGACTATTTGAACAATTATTTATTTCGA
318 AAAATAAATCTATTTACCAAACAAATTCAAATAGTTACAACTATTTAAACAATTATTTATTTAAA
* * ** *
21171277 ATTGTTATGACTC-TTT-GTTTCGTCATAAAACAATTATTTCT-GTTCA-TACAAGAC-TATTCG
383 ATCGTTATAAC-CATTTGGTTT-GTCATAAAACAATTATTT-TAGTT-AGTACAAG-CTTAGACA
* * * * *** * *
21171337 GATTAAAAGAATATTAA-TTATTAATATTTTGACAGTTAATAAGTAAAATATTTAAAAAAATAAA
443 GAATAAAATAATACTAATTTATTAATAGTCCAAAAATTAATAAGT-AAAT-TTT--AAAAATAAA
* ** ** * * * * *
21171401 TATGTTTACCGAACAAGTTGAAATAGTCAT-GACTATTTGAATAATTAACTATTTCAAATCATTA
504 TATGTTTACCAAATTAGTAAAAATAATTATCG-CAATTTCAATAATTATCTATTTCAAATCATTA
* * * * * * * * *
21171465 T-AACCTTCTGTTTTGTAATAATACAACTGTTTTA-ATTCAAATAAGCTTATT-TGAAATAA-AA
568 TGAGCCTTTTGTTTTGTCATAA-AAAATTGTTTTATA-TCATACAAGCATATTATAAAATAATAA
* * * *
21171526 TAATACTAATTTATTAATA-TTCTAAAAATTAATGAGTAAGAGACTTAAAAAATAAATCTGTTTA
631 TAATAATAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTA
* * * * * * * * * * * * *
21171590 CCGAA-CAAGCTCAAATTGTTATGACTATCTGAATAA-TTATCTATTTCAAAACATCATGACTTT
695 CCGAACCAA-TTCAAATAGGTATGAATATTTGAACAATTTA-CGATCTCAAATCGTTA-AAATTT
* * * * * *
21171653 TT-TTTTAATCATAAAACAATTGGTTCTAT-T-CAT-TAAGCTTATTTC-GAATAAAATAATA-T
757 TTGTTCT-ATCATAAAACAATT-ATT-TATGTCCATACAAGCTTA-CTCAAAATAAAAGAATACT
* * * * * *
21171712 AAACTGATTAATA-TTACAAAAATTAATAAGTAA-AAATTTAAAAAATAAATCTG-TTTTCTAAA
818 AATCT-AATAATATTTA-AAAAATTAATAAATAAGAGATTTAAAAAATAAATGTGCTTGTC-AAA
* * * * *
21171774 C-ACGTTCAAATAGTTATATCTATT
880 CTA-GTTCAAATAATTAAAACCATA
* * * *
21171798 TGAACAATTATGC-ATTTCAAATTGTTATG--A-----TCTT-T--T-------GTTTTT--GTT
1 TAAATAATTAT-CTATTTCAAATTGTTACGACATTTTGTCTTGTCATAAAACAATTTTTTCAGTT
* * * ** * * * * *
21171843 AATAAAATCTTATTCAGTATAAAATAATACTAATTTATTAAAATTACAAAAATTAATAAGTAAAA
65 CATACAAGCTTATTTGGAATAAAATAATACAAATTTA-TAATATTTCAAAAATTAATAAGTAAGA
* *** *
21171908 GATTTTAAAAAATAAAATCTATTTACTGAGTGAGTTCAAATAGTTATGACTATTTGAAAAATTAT
129 GA-TTTAAAAAAT-AAATCTATTTACCGAACAAGTTCAAAT-GTTATGACTATTTGAATAATTAT
* * * * * * * * **
21171973 TTATTTCAAATTGTTATGATCTTTTGTCTTCTCATAAAATAATTATTTCTA-CTTATACAAGTTT
191 TTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTC-AGCTCATAAAAGCAT
* * * * * * * **
21172037 ATTCGAAATAAAATAATATTAATCTATTAATATTCTAAAAATTAA-TA-AGTTA-GAGATTT-AA
255 ATACAAAACAAAATAATAATAATTTATTAACATTCAAAAAATTAATTACA-AAAGGAGATTTAAA
* * * * * ** *
21172098 AAATAAATCTATTCACTAAACAAGTTCAAATAG-T-CAAGTCTATTCAAACTATTAACTATTTCA
319 AAATAAATCTATTTACCAAACAAATTCAAATAGTTACAA--CTATTTAAACAATTATTTATTTAA
* * * * * * ** ** *
21172161 AATCGTTATGA-CATTTTGTTTTGTCGTAAAATAATTGTTTTTA-TTCA-AACAAAATTATTCAA
382 AATCGTTATAACCA-TTTGGTTTGTCATAAAACAATT-ATTTTAGTT-AGTACAAGCTTAGACAG
* *** * * *
21172223 AATAAAATAATACTAATTTATTAATATTTTGAAAATAAATAAG-AGA-TTTAAAACCTAAATCA-
444 AATAAAATAATACTAATTTATTAATAGTCCAAAAATTAATAAGTAAATTTTAAAA-ATAAAT-AT
* *** ** * * * * * **
21172285 ATTTATTGAATTAGTTCAAATAGTTAT-GACTATTTGAACT-ATTATCTATCTAAAATTGTTATG
507 GTTTACCAAATTAGTAAAAATAATTATCG-CAATTTCAA-TAATTATCTATTTCAAATCATTATG
* * * ** * * *
21172348 A-TC-TTT-TTTTCTCATAAAGTAATTGTTTT-TATTCATACAAGTTTATT-CAGAGTAA-AATA
570 AGCCTTTTGTTTTGTCATAAA-AAATTGTTTTATA-TCATACAAGCATATTATAAAATAATAATA
* ** * * * * **
21172407 TTGCTGAA-TTAATAATA-TTCTAAAAATTAATAAGTAAGAGATGTAAAACATAAATGTGTTTGT
633 ATAAT-AATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTAC
* * * * * *
21172470 TGAACTAGTTCAAATA-GT-T--A-A---G-ACTA-GTA-GA--AC-AA---TT---ATTTTTG-
696 CGAACCAATTCAAATAGGTATGAATATTTGAACAATTTACGATCTCAAATCGTTAAAATTTTTGT
* * * ** * * * *
21172514 TC-ATC---AAATAATTGGTTCTAT-T-CATACTATTTTATTCAGAATAAAATAATACTAATTTA
761 TCTATCATAAAACAATT-ATT-TATGTCCATACAAGCTTACTCAAAATAAAAGAATACTAATCTA
** * ** * * * *** ** *
21172573 ATAATATTTTGAAACTTAATAACCAAGAAAATTAAAAAATAAATCTAAGTGTTGAACTAGTTCCA
824 ATAATATTTAAAAAATTAATAAATAAGAGATTTAAAAAATAAATGTGCTTGTCAAACTAGTTCAA
* * *
21172638 ATAGTTAAGACTATA
889 ATAATTAAAACCATA
* * * **
21172653 TGAATGATTATCTATTTCAAACTGTTATAACATTTTG-CTTTGTCATAAAACAATTGTTTT--GT
1 TAAATAATTATCTATTTCAAATTGTTACGACATTTTGTC-TTGTCATAAAACAATT-TTTTCAGT
* * * * * * * *
21172715 TCGTACAAGTTTATTTGGATTTAAATAATACTAATTCAATAATATTTTAAAAATTAATATGTAAG
64 TCATACAAGCTTATTTGGAATAAAATAATACAAATT-TATAATATTTCAAAAATTAATAAGTAAG
* * * * * *
21172780 AGATTTAAAAAATAAATTTGTTTATCGAATAAGTTCAAATGGTTAAGACTATTTGAATAATTATC
128 AGATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAAT-GTTATGACTATTTGAATAATTATT
* * * * * *
21172845 TATTTCAAATCGTTTTGGCCTTTTGTTTGGTTATAAAACAATTGTTTCAGCTCATACAAGCTTAT
192 TATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGCTCATAAAAGCATAT
* * *
21172910 TCAAAACAAATTAATACTAATTTATTAACATTCAAAAAATTAATTACAAAAGGAGATTTTAAAAA
257 ACAAAACAAAATAATAATAATTTATTAACATTCAAAAAATTAATTACAAAAGGAGA-TTTAAAAA
* *** * * * *
21172975 ATAAATCTATTTACCAAACAAGTTCAAATAGTTATTGCTATTTGAGCAATTGTTTATTTAAAATT
321 ATAAATCTATTTACCAAACAAATTCAAATAGTTACAACTATTTAAACAATTATTTATTTAAAATC
*
21173040 GTTATAACCATTTGGTTTGTCATAAAATAATTATTTTAGTTAGTACAAGCTTAGACAGAATAAAA
386 GTTATAACCATTTGGTTTGTCATAAAACAATTATTTTAGTTAGTACAAGCTTAGACAGAATAAAA
* * *
21173105 TAATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAAAATTTTAAAAATAAATATGTTTAC
451 TAATACTAATTTATTAATAGTCCAAAAATTAATAAGT---AAATTTTAAAAATAAATATGTTTAC
** * * * * *
21173170 TGAATTAGTAAAAATAATTATGGCAATTTGAATGATTATCTATTTGAAATCATTATGAGCTTTTT
513 CAAATTAGTAAAAATAATTATCGCAATTTCAATAATTATCTATTTCAAATCATTATGAGCCTTTT
* *
21173235 GTTTTGTCATAAAAAATTGTTTTTTATCATACAAGCTTATTCAAAATAAAATAATAATAATAATA
578 GTTTTGTCATAAAAAATTGTTTTATATCATACAAGCATATT----ATAAAATAATAATAATAATA
* * * *
21173300 ATTTATTAATATTTGAAAAATTAATTAGTAAGAGATTTAAAAAATAAATTTGTTTACCGAACTAG
639 ATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAA
* * *
21173365 TTCAAATAGGTATGAATATTTGAACAATTTACGATCTCAAATCGTTAAGATTTTTGTTTTGTCAT
704 TTCAAATAGGTATGAATATTTGAACAATTTACGATCTCAAATCGTTAAAATTTTTGTTCTATCAT
* * * * * *** * *
21173430 TAAACAATTGTTT-TTTATCATAGAAGCTTACTC-GGTTAAAAATAATACTAATTTAATAATATT
769 AAAACAATTATTTATGT-CCATACAAGCTTACTCAAAAT-AAAAGAATACTAATCTAATAATATT
* * * * *
21173493 TCAAAAATTACTAAATAGGAGATTTAAAAAATAAATGTGCTTGTGAAATTAGTTCAAATAATTAA
832 TAAAAAATTAATAAATAAGAGATTTAAAAAATAAATGTGCTTGTCAAACTAGTTCAAATAATTAA
21173558 AACCAT-
897 AACCATA
* * *
21173564 TAGAATAATTATCTATTTCAGATTGTT-CTGATATTTTGT-TTATTCA-AAAA-ATATTTATTTC
1 TA-AATAATTATCTATTTCAAATTGTTAC-GACATTTTGTCTT-GTCATAAAACA-ATTT-TTTC
* * * **
21173625 A-TATCTTACAAGCTTATTTGGAATAAAATAATCCAAATTTAGTAACATTTGGAAAATTAATAAG
61 AGT-TCATACAAGCTTATTTGGAATAAAATAATACAAATTTA-TAATATTTCAAAAATTAATAAG
* * * *
21173689 CAAAAGATTTGAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTTATGATTATTTGAACAA
124 TAAGAGATTT-AAAAAATAAATCTATTTACCGAACAAGTTCAAAT-GTTATGACTATTTGAATAA
* * * * * *
21173754 TTATTTATTTAAAATCATTATGACATTTTGTTTTGACATAAAACAATTGTTTCAGTTGATAAAAG
187 TTATTTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGCTCATAAAAG
* * * ** *
21173819 CATA-ACAAAAATAAAATAATAATAATTTCTTAATATTTTAAAAATTAA-TA-AGCAA-GAG-TT
252 CATATAC-AAAACAAAATAATAATAATTTATTAACATTCAAAAAATTAATTACA-AAAGGAGATT
* * *
21173879 TAAAAAAGTAAATTTGTTTACCGAACAAATTCAAATAGTTACAACTATTTAAACAATTATTTATT
315 TAAAAAA-TAAATCTATTTACCAAACAAATTCAAATAGTTACAACTATTTAAACAATTATTTATT
* * * * * **
21173944 TAAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGCTTTT-GTTCA-TACAAG-TTTGTT
379 TAAAATCGTTATAACCATTTGGTTTGTCATAAAACAATT-ATTTTAGTT-AGTACAAGCTTAGAC
* * *
21174006 TGAAATAAAATAATACTAATTTATTAATAGTCCAAAAATTAATAAGT-GA-TTTAAAAAGTGAAT
442 AG-AATAAAATAATACTAATTTATTAATAGTCCAAAAATTAATAAGTAAATTTTAAAAA-TAAAT
* ** * * *
21174069 CTGTTTACCAAATTAGTTCAAATAATTATCGCCATTTCAATAATTATCTATTTCAAATCATTGTT
505 ATGTTTACCAAATTAGTAAAAATAATTATCGCAATTTCAATAATTATCTATTTCAAATCATTATG
* * **
21174134 A-CCTTTTG-TTTGATCATATAACAATTGTTTTATATCATACTAGCATATT-TGGAATAA-AATA
570 AGCCTTTTGTTTTG-TCATA-AAAAATTGTTTTATATCATACAAGCATATTATAAAATAATAATA
* * *
21174195 ATACTAATTTCA-TAATCTTTCAAAAATTAATAAGTAAGAGATTT-AAAAA-AAATTTGTTTACT
633 ATAATAATTT-ATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACC
* * * * *
21174257 GAACCAATTCAAATAGTTATGACTATTTGAAGAATTGTA-TA-CTTCAAATCAATTATTTACAAA
697 GAACCAATTCAAATAGGTATGAATATTTGAACAATT-TACGATC-TCAAATC-----GTT--AAA
* * * * *
21174320 ATAAACATTTTGTTCTATTATAAAATAATTATTTATGTCCATACATGTTTATTCAAAATAAAAGA
753 AT-----TTTTGTTCTATCATAAAACAATTATTTATGTCCATACAAGCTTACTCAAAATAAAAGA
* ** * *
21174385 ATACTAATCTAATAATATTTAAAAAATTAATAACTAAGAGATTTAAAATTTAAATTTGTTTGTCA
813 ATACTAATCTAATAATATTTAAAAAATTAATAAATAAGAGATTTAAAAAATAAATGTGCTTGTCA
* ** * *
21174450 AACTAGTTCAATTTGTTAAGACTATA
878 AACTAGTTCAAATAATTAAAACCATA
*
21174476 TAAATAATTATCTATTTCAAATTGTTACGACATTTTGTCTTGTCATAAAACAATTTTTTTAGTTC
1 TAAATAATTATCTATTTCAAATTGTTACGACATTTTGTCTTGTCATAAAACAATTTTTTCAGTTC
* * * * **
21174541 AAACTAGCTTATTTGAAATAAAATAAAATGAATTTATAGATATTTCAAAAATTAATAAGTAAGAG
66 ATACAAGCTTATTTGGAATAAAATAATACAAATTTATA-ATATTTCAAAAATTAATAAGTAAGAG
* * * *
21174606 ATTTAAAAAATAATTCTATTTACCTAACTAGTTCTAATGATTATGACTATTTGAATAATT-TTCT
130 ATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATG-TTATGACTATTTGAATAATTATT-T
* * * * * *
21174670 ATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAAAAAATGCTTT-TGTTCATAATAA--A-A
193 ATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTCAGCTCATAA-AAGCATA
*
21174731 T---AAAC-AAATCCAT--TAA--TA-T----TTC-AAAAATTAA-T----AA-GAGATTTAAAA
256 TACAAAACAAAAT-AATAATAATTTATTAACATTCAAAAAATTAATTACAAAAGGAGATTTAAAA
* * * * ** * * * * *
21174776 AATAAATCTTTTTATCAAACTAGTTCAAATAGTTATGACTAATTGAGCAATTAATTATTTCAAAT
320 AATAAATCTATTTACCAAACAAATTCAAATAGTTACAACTATTTAAACAATTATTTATTTAAAAT
* * * * * * * ** * *
21174841 CATTCTGA-CTTTTTGTTCTATTATAAAACAA-TAGTTTCTA-TTCA-TACAAGCTTATTCGGAT
385 CGTTATAACCATTTGGTT-TGTCATAAAACAATTA-TTT-TAGTT-AGTACAAGCTTAGACAGAA
* * * * * * *
21174902 TAAAATAATATTAATTTATTATTATTTCAATAATTAATAAGTTAAAAATTTAAAAATAAATATTT
446 TAAAATAATACTAATTTATTAATAGTCCAAAAATTAATAAG-T-AAATTTTAAAAATAAATATGT
** * * * * * * ** *
21174967 TTACTGAACTAG-ATCAAATAGTCAT-GACTATTTGAATAATTATCTATTTCAAATTGTTAT-AA
509 TTACCAAATTAGTA-AAAATAATTATCG-CAATTTCAATAATTATCTATTTCAAATCATTATGAG
* * * ** *
21175029 CCTTTTGTTTTGTCATAAAACAAATGCTTTTGT-TCATATAAGTTTGTTCAT--AATAA-AATAA
572 CCTTTTGTTTTGTCATAAAA-AATTG-TTTTATATCATACAAGCATATT-ATAAAATAATAATAA
* *
21175090 -ACA-AATCTATTAATATTTCAAAAA-T--TAA-TAAGAGATTTAAAAAATAAATCTT-TTTATC
634 TA-ATAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-TTGTTTACC
* * * * * * * * ** *
21175148 AAACTAGTTCAAATAGTTATGACTATTTGAGCAATTAATC-ATTTCAAATTAC-TTTGACTTTTT
697 GAACCAATTCAAATAGGTATGAATATTTGAACAATTTA-CGATCTCAAA-T-CGTTAAAATTTTT
* * * * * ** * * * *
21175211 GTTCTATTATAAAACAA-TAGTTTCTATTCATACAAGCTTATTCGGATTAAAATAATATTAATTT
759 GTTCTATCATAAAACAATTA-TTTATGTCCATACAAGCTTACTCAAAATAAAAGAATACTAATCT
* * * * * * * * * *
21175275 ATTATTATTTCAACAATTAATAAGTTAA-AAATTTTAAAAATAAATATG-TT-TACTGAACTAGA
823 AATAATATTTAAAAAATTAATAA-ATAAGAGATTTAAAAAATAAATGTGCTTGT-C-AAACTAGT
* * ** * *
21175337 TCAAATAGTCATGACTATT
885 TCAAATAATTAAAACCATA
* * * * * * *
21175356 TGAATAATTATCTATTTCAAATTGTTATG--ATTTTTTTTTGTCATAAAAAAATTATTTCAGGTC
1 TAAATAATTATCTATTTCAAATTGTTACGACATTTTGTCTTGTCATAAAACAATTTTTTCAGTTC
* * * * * *
21175419 ATATAAGCTTATTCGAAATAAAATAATACCAAGTTGT-TAATATTCCAAAAATTAATAATTAAGA
66 ATACAAGCTTATTTGGAATAAAATAATA-CAAATT-TATAATATTTCAAAAATTAATAAGTAAGA
** * * *
21175483 GATTTAAAAAATGAAA-CTATTTACAAAACAAGTTTAAATAATTATGACTATTT-AGACAATTAT
129 GATTTAAAAAAT-AAATCTATTTACCGAACAAGTTCAAAT-GTTATGACTATTTGA-ATAATTAT
* * * * * * *
21175546 CTATTTAGAAAT-GCTATAACCTTTTGTTTTGTCATAAAA-AGA--GTTCATCTGTTCATACAAG
191 TTATTT-CAAATCGTTATGACCTTTTGTTTTGTCATAAAACA-ATTGTT--TCAGCTCATAAAAG
* * * * * * * **
21175607 CCTATTTC-AGATAAAATAATACA-AATTTATTAATATT-AAGACAATTAATAATTAAA--AGAT
252 CATA-TACAAAACAAAATAATA-ATAATTTATTAACATTCAA-AAAATTAATTACAAAAGGAGAT
* * * * * * ** * * ** *
21175667 TTAAAAAATAAATCCATTCACCACACAAGTTTAAATCGTTATGACTATTTGAGCAACAAATTA-T
314 TTAAAAAATAAATCTATTTACCAAACAAATTCAAATAGTTACAACTATTTAAACAATTATTTATT
** * * **
21175731 TATGA-C-TT-T-----TTT-TTTTGTCATAAAACAATTATTTTTA-TTCA-TATAAGCTTATTC
379 TAAAATCGTTATAACCATTTGGTTTGTCATAAAACAATTA-TTTTAGTT-AGTACAAGCTTAGAC
* * * *** * * *
21175785 AGATTAAAATAATATTAATTTATTAATATTTTGACAATTAATTAGTAAAAGATTTAGAAAATAAA
442 AGAATAAAATAATACTAATTTATTAATAGTCCAAAAATTAATAAGT-AAA-TTTTA-AAAATAAA
** ** * ** * * * * * *
21175850 TATGTTTACTGAACAATTTCAAATAGTCAT-GACTATTTTAATAATTATCTATTTCAAATTATTG
504 TATGTTTACCAAATTAGTAAAAATAATTATCG-CAATTTCAATAATTATCTATTTCAAATCATTA
* * * * * * * *
21175914 TGA-TCTTTTATTTTGTAATAAAACAATTGTTTCA-ATTA-ACATAAGCTTATT-TGAAGTAA-A
568 TGAGCCTTTTGTTTTGTCATAAAA-AATTGTTTTATATCATAC--AAGCATATTATAAAATAATA
* * * * ** * *
21175974 ATAATACTAATTTATTAATATTCCAAAAATTAATGATTAAGAGAACTAGAAAAATAAATCTATTT
630 ATAATAATAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTA-AAAAATAAATTTGTTT
* * * * * * * * * * * * **
21176039 ACTGAA-TAAGTTCAAAGAGTTTTGACTATCTGAACAA-TTATCTATTTCAAAACATTATGACCT
694 ACCGAACCAA-TTCAAATAGGTATGAATATTTGAACAATTTA-CGATCTCAAATCGTTA-AAATT
* * * * ** * * * *
21176102 TTTCTTTTGTCAGAAAACAAATGGTTCTAT-T-CATCCAAGCTTATTTC-GAATAAAATAATA-T
756 TTTGTTCTATCATAAAAC-AATTATT-TATGTCCATACAAGCTTA-CTCAAAATAAAAGAATACT
** * * * *
21176163 AAAT-TAATTAATATTCCAAAAGTTAATAAGA-AA-AAATTTTAAAAATAAATTTG-TT-TACTA
818 -AATCTAA-TAATATTTAAAAAATTAATAA-ATAAGAGATTTAAAAAATAAATGTGCTTGT-C-A
* * ** * *
21176223 AAC-ACATTCAAATAGTTATGACTATT
878 AACTA-GTTCAAATAATTAAAACCATA
* * ** * * * *
21176249 TGAACAATTATCTATTTCAAATCATTATGACCA-TTTGTTTTGTCAT-AAACTAATTGTTTCTGT
1 TAAATAATTATCTATTTCAAATTGTTACGA-CATTTTGTCTTGTCATAAAAC-AATTTTTTCAGT
* * * * * *
21176312 TCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAAAATTCCAAAAGTTAATAAGAAAA
64 TCATACAAGCTTATTTGGAATAAAATAATACAAATTTA-TAATATTTCAAAAATTAATAAGTAAG
* ** * *
21176377 AGATTTAAAAAATAAATCTTTTTATAGAGCGAGTTCAAATAGTTATGACTATTTGAATAATTATT
128 AGATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAAT-GTTATGACTATTTGAATAATTATT
* * * * **
21176442 TGTTTCAAATTGTTATGATCC-ATTGTTTTGTCATAAAACAATTGTTTCTA-TTCATAAAAGTTT
192 TATTTCAAATCGTTATGA-CCTTTTGTTTTGTCATAAAACAATTGTTTC-AGCTCATAAAAGCAT
** * * * * * **
21176505 ATTTAGAATAAAATAATATTAATTTATTAATATTCTAAAAATTAA-TA-AGTTA-GAGATTTAAA
255 ATACAAAACAAAATAATAATAATTTATTAACATTCAAAAAATTAATTACA-AAAGGAGATTTAAA
21176567 AAATAAAT
319 AAATAAAT
21176575 TTGTTTATTG
Statistics
Matches: 6524, Mismatches: 1347, Indels: 959
0.74 0.15 0.11
Matches are distributed among these distances:
853 22 0.00
854 36 0.01
855 66 0.01
856 6 0.00
857 1 0.00
858 6 0.00
861 1 0.00
862 3 0.00
863 1 0.00
865 3 0.00
866 1 0.00
868 1 0.00
870 5 0.00
871 130 0.02
872 14 0.00
873 61 0.01
874 11 0.00
875 131 0.02
876 4 0.00
877 7 0.00
878 301 0.05
879 240 0.04
880 210 0.03
881 234 0.04
882 60 0.01
883 65 0.01
884 72 0.01
885 165 0.03
886 48 0.01
887 183 0.03
888 267 0.04
889 190 0.03
890 49 0.01
891 189 0.03
892 191 0.03
893 159 0.02
894 332 0.05
895 523 0.08
896 276 0.04
897 331 0.05
898 256 0.04
899 371 0.06
900 133 0.02
901 164 0.03
902 42 0.01
903 3 0.00
904 8 0.00
905 9 0.00
906 23 0.00
907 92 0.01
908 2 0.00
909 7 0.00
910 110 0.02
911 359 0.06
912 152 0.02
913 62 0.01
914 136 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (903 bp):
TAAATAATTATCTATTTCAAATTGTTACGACATTTTGTCTTGTCATAAAACAATTTTTTCAGTTC
ATACAAGCTTATTTGGAATAAAATAATACAAATTTATAATATTTCAAAAATTAATAAGTAAGAGA
TTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATGTTATGACTATTTGAATAATTATTTATT
TCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAGCTCATAAAAGCATATACAA
AACAAAATAATAATAATTTATTAACATTCAAAAAATTAATTACAAAAGGAGATTTAAAAAATAAA
TCTATTTACCAAACAAATTCAAATAGTTACAACTATTTAAACAATTATTTATTTAAAATCGTTAT
AACCATTTGGTTTGTCATAAAACAATTATTTTAGTTAGTACAAGCTTAGACAGAATAAAATAATA
CTAATTTATTAATAGTCCAAAAATTAATAAGTAAATTTTAAAAATAAATATGTTTACCAAATTAG
TAAAAATAATTATCGCAATTTCAATAATTATCTATTTCAAATCATTATGAGCCTTTTGTTTTGTC
ATAAAAAATTGTTTTATATCATACAAGCATATTATAAAATAATAATAATAATAATTTATTAATAT
TTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAATTCAAATAGGTA
TGAATATTTGAACAATTTACGATCTCAAATCGTTAAAATTTTTGTTCTATCATAAAACAATTATT
TATGTCCATACAAGCTTACTCAAAATAAAAGAATACTAATCTAATAATATTTAAAAAATTAATAA
ATAAGAGATTTAAAAAATAAATGTGCTTGTCAAACTAGTTCAAATAATTAAAACCATA
Found at i:21176626 original size:16 final size:17
Alignment explanation
Indices: 21176605--21176638 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
21176595 AATAGTCATT
21176605 TCTATTT-GAACTATCA
1 TCTATTTCGAACTATCA
*
21176621 TCTATTTCGAACTGTCA
1 TCTATTTCGAACTATCA
21176638 T
1 T
21176639 GACATTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (17 bp):
TCTATTTCGAACTATCA
Found at i:21176699 original size:30 final size:30
Alignment explanation
Indices: 21176657--21176723 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
21176647 GTTTCGTCAT
*
21176657 AAAATAATTGGTATTCATACAAAATTATTC
1 AAAATAACTGGTATTCATACAAAATTATTC
*
21176687 AGAATAACTGGTATTCATACAAAATTATTC
1 AAAATAACTGGTATTCATACAAAATTATTC
21176717 AAAATAA
1 AAAATAA
21176724 AATAATACCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.33
Consensus pattern (30 bp):
AAAATAACTGGTATTCATACAAAATTATTC
Done.