Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 112 of 125
Found at i:21178957 original size:181 final size:181
Alignment explanation
Indices: 21178668--21180627 Score: 1685
Period size: 181 Copynumber: 10.9 Consensus size: 181
21178658 TTATTTAACT
** ** * * *
21178668 AGTTCAAATAGTTATGACTATTTGAACAATTAAATATTTCAAATTGTTATAACTTTTTGTTATGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * * * * * * *
21178733 CATAAAACAATTATTTTTGTT-ATAAAAGTTTA-TTCGAAATAAAATAATACTAATGTAATAATA
66 CATAAAACAATTGTTTCTATTCTTACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATA
* * **
21178796 TTCTAAAAATTAATAACTAAGAGATTTAAAAAAATAAATGTATTTACAAAACC
130 TTCTAAAAATTAATAAGTAAGAGATTT-AAAAAATAAATGTGTTTACCGAACC
* * * * * * *
21178849 AGTTCAAATAATTAAGACTATATGAATAATTTTTTATTTTAAATCATTATGA-CTTTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * *
21178913 CATAAAATAATT-TTAT-TAGTTCTTAGTAA-CTTATTTAGAATAAAATAA-AATAAAATTATTA
66 CATAAAACAATTGTT-TCTA-TTCTTA-CAAGCTTATTTAGAATAAAATAATACT-AATTTATTA
* * * ** *
21178974 ATATT-TCAAAAATTAGTAAGTAAGAGATTT-AAAAATAATTTTGTTTGTCGAACT
127 ATATTCT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTACCGAACC
* * * *
21179028 AGTTCAAATAATCATGACTATTTGAACAATTATCTATTTTAAATCATTATTACCTTTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * * * *
21179093 CATAAAACAAATGCTTT-TATTCATATAAGTTTATTTGGAATAAAATAATATTAATTTATTAATA
66 CATAAAACAATTG-TTTCTATTCTTACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATA
* * * * *
21179157 TTTTGAAAATTAAGAAGTAAGAGATTTAAAAAATAAATTTGTTTA-CTAAGCC
130 TTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTACCGAA-CC
* * ** * * * * * *
21179209 AGTTCAATTAGTTATAACTATTTTCACCATTATTTACTTCAAATCGTAATGACCATTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * ** * * *
21179274 CATAAAAGAATTGTTTCTATTCATAC-AGTCTTATTCGGAATAAAGTAATGCTAATTTATTAACA
66 CATAAAACAATTGTTTCTATTCTTACAAG-CTTATTTAGAATAAAATAATACTAATTTATTAATA
* * * *
21179338 TTCTAAAAATTAATAAGTAACAGATTTAAAAAATAAATTTGTTAACCTG-ACT
130 TTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTACC-GAACC
* * * *
21179390 AGTGCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTAT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * *
21179455 CATAAAACAATTGTTTCTATT-TGTACAAGCTTATCTAAAATAAGATAATTCTAATTTATTAATA
66 CATAAAACAATTGTTTCTATTCT-TACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATA
* * * * *
21179519 TTCCAAAAATTAATAAGTAAGAGATTTAAAAAATGAATTTGTTTACTGAACA
130 TTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTACCGAACC
* * * * * * * * * *
21179571 AGTTCAACTAGTTATGACTGTTTGAATAGTTATCTATATGAAATTAATATAACTTTTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * * *
21179636 CATAAAACAATTTTTTTCCATTCATACAAGCTTATTTTA-AATAAAATAATACAAATTTGTTAAT
66 CATAAAACAA-TTGTTTCTATTCTTACAAGCTTA-TTTAGAATAAAATAATACTAATTTATTAAT
* *
21179700 ATTCCAAAAATTAATAAGTAA-A-ATTT-AAAAATATAA-GT-TTTA-TGAACAC
129 ATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATA-AATGTGTTTACCGAAC-C
* * *
21179749 A-TTCAAATAGTTATGACTATTTGATCAATTATCTATTTTAAAT-ATTATGACTTTTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * * * * *
21179812 CATAAACCAATTATTTTTGTT-TATACAAGCATATTT-GAAATAAAATAATACTAGTTTATGAAT
66 CATAAAACAATTGTTTCTATTCT-TACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAAT
* * * ** *
21179875 ATTCCAAAAATTGATAAGTAAAAGATTT-AAAAATAAATCCGTTTACC-AAGCA
129 ATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTACCGAA-CC
* * * * * *
21179927 ATTTCAAATAGTTATGACTATTTGAACAATTGTTTATTTAAAAT-AGTTTTGACCTTTTTTTTTG
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTATGACCTTTTGTTTTG
* * ** *
21179991 TCATAAAACAATTGTTTCTATTCATACAAGTTTATTGGGAATAAAAAAATACTAATTTATTAATA
65 TCATAAAACAATTGTTTCTATTCTTACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATA
* *
21180056 TTCTAAAAATTAAT-AGATAGGAGATTTAAAAAATAAATGTGTTTACCGAACA
130 TTCTAAAAATTAATAAG-TAAGAGATTTAAAAAATAAATGTGTTTACCGAACC
* * * * *
21180108 AGTTCACATAGTTAT-ATCCATTTGAACAATTATCTGTTTGAGATCATTATGACCTTTTGTTTTG
1 AGTTCAAATAGTTATGA-CTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTG
* ** * * *
21180172 TCATAAAACAATTGTTTCTATT-TATGCAAAATTATTTAGAATAAAATAATACTGATCTGTTAAT
65 TCATAAAACAATTGTTTCTATTCT-TACAAGCTTATTTAGAATAAAATAATACTAATTTATTAAT
* * * * * ** *
21180236 ATTTTGAAAA-T--TAA-TAAGAGATTTAAAAACTAAATTTATTTATGGAAAC
129 ATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTACCGAACC
* * * * * * * *
21180285 ACTTCAAATAGTTGTGACTATTTAAATAATTGTCTATCTCAAATCATTATGATC-TTTATTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * * * * *
21180349 CATAAAAAAATTGTTTCTTTTCATACAAGCTTATTCAGATTAAAAT-ATATTAATTTAATAATAT
66 CATAAAACAATTGTTTCTATTCTTACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATAT
* ** *
21180413 TCCAAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTGTCGTACC
131 T-CTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTACCGAACC
* * * * * * * **
21180465 AATTCAAATAGTTAAGACAATTAGAACAATTATTTATTTCAAATCATTCTAACCTTTTGTTAAGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * * * * * * * *
21180530 CATAAAATAATTATTTC-AGTTCATACAAGTTTATTCAAAAGACAATAATAGTAATTTATTAACA
66 CATAAAACAATTGTTTCTA-TTCTTACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATA
* * *
21180594 TT-TGAAAAATTAATGAGCAAGAGATTAAAAAAAT
130 TTCT-AAAAATTAATAAGTAAGAGATTTAAAAAAT
21180628 TATTTATACA
Statistics
Matches: 1440, Mismatches: 281, Indels: 116
0.78 0.15 0.06
Matches are distributed among these distances:
174 3 0.00
175 71 0.05
176 80 0.06
177 119 0.08
178 14 0.01
179 120 0.08
180 276 0.19
181 663 0.46
182 91 0.06
183 3 0.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.40
Consensus pattern (181 bp):
AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
CATAAAACAATTGTTTCTATTCTTACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATAT
TCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTACCGAACC
Found at i:21180579 original size:718 final size:722
Alignment explanation
Indices: 21178672--21180606 Score: 1898
Period size: 718 Copynumber: 2.7 Consensus size: 722
21178662 TTAACTAGTT
* ** ** * * * *
21178672 CAAATAGTTATGACTATTTGAACAATTAAATATTTCAAATTGTTATAACTTTTTGTTATGTCATA
1 CAAATAGTTATGACCATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATA
* * * * *
21178737 AAACAATTATTT-T-TGTTATA-AAAGTTTAT-TCGAAATAAAATAATACTAATGTAATAATATT
66 AAACAATTGTTTCTAT-TTATACAAA-ATTATCT-AAAATAAAATAATACTAATCTATTAATATT
* * * ** * * *
21178798 CTAAAAATTAATAACTAAGAGATTTAAAAAAATAAATGTATTTACAAAACCAGTTCAAATAATTA
128 CCAAAAATT-ATAAGTAAGAGATTT-AAAAAATAAATTTATTTACTGAACAACTTCAAATAGTTA
* * * * * * * * * * *
21178863 AGACTATATGAATAATTTTTTATTTTAAATCATTATGACT-TTTGTTTTGTCATAAAA-TAATT-
191 TGACTATTTAAATAATTATCTATATCAAATCAATATAACTCTTTATTTTGTCATAAAACAAATTG
* * * * * * * *
21178925 TTAT-TAGTTCTTAGTAA-CTTATTT-AGAATAAAATAAAATAAAATTATTAATATTTCAAAAAT
256 TT-TCCA-TTCATA-CAAGCTTATTTCA-AATAAAATAATACAAATTTAATAATATTCCAAAAAT
* * * * * * *
21178987 TAGTAAGTAAGAGATTTAAAAATAATTTTGTTTGTCGAACTAGTTCAAATAATCATGACTATTTG
317 TAATAAGTAAGAGATTTAAAAATAAATGTGTTTGTCG-ACCAATTCAAATAGTTATGACTATTTG
* **
21179052 AACAATTATCTATTTTAAATCATTATTACCTTTTGTTTTGTCATAAAACAAATGCTTTTA-TTCA
381 AACAATTATCTATTTTAAATCATTATAACCTTTTGTTTTGTCATAAAA-AAATTATTTTAGTTCA
* * * * *** *
21179116 TATAAGTTTATTTGGAATAAAATAATATTAATTTATTAATATTTTGAAAATTAAGAAGTAAGAGA
445 TACAAGTTTATTTGAAATAAAATAATACTAATTTATGAATATTCCAAAAATTAAGAAGTAAAAGA
** * * * ** *
21179181 TTTAAAAAATAAATTTGTTTACTAAGCCAGTTCAATTAGTTATAACTATTTTCACCATTATTTAC
510 TTTAAAAAATAAATCCGTTTACCAAGCAAGTTCAAATAGTTATAACTATTTGAACAATTATTTAC
* * *
21179246 TTCAAATCGTAATGACCATTTGTTTTGTCATAAAAGAATTGTTTCTATTCATACAGTCTTATTCG
575 TTAAAATAGTAATGACCATTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAGTCTTATTCG
** *
21179311 GAATAAAGTAATGCTAATTTATTAACATTCTAAAAATTAATAAGTAACAGATTTAAAAAATAAAT
640 GAATAAAAAAATACTAATTTATTAACATTCTAAAAATTAATAAGTAACAGATTTAAAAAATAAAT
* *
21179376 TTGTTAACCTGACTAGTG
705 GTGTTAACCTGACAAGTG
* * *
21179394 CAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATA
1 CAAATAGTTATGACCATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATA
* ** * * *
21179459 AAACAATTGTTTCTATTTGTACAAGCTTATCTAAAATAAGATAATTCTAATTTATTAATATTCCA
66 AAACAATTGTTTCTATTTATACAAAATTATCTAAAATAAAATAATACTAATCTATTAATATTCCA
* * * *
21179524 AAAATTAATAAGTAAGAGATTTAAAAAATGAATTTGTTTACTGAACAAGTTCAACTAGTTATGAC
131 AAAATT-ATAAGTAAGAGATTTAAAAAATAAATTTATTTACTGAACAACTTCAAATAGTTATGAC
* * * * * * * * *
21179589 TGTTTGAATAGTTATCTATATGAAATTAATATAACTTTTTGTTTTGTCATAAAACAATTTTTTTC
195 TATTTAAATAATTATCTATATCAAATCAATATAACTCTTTATTTTGTCATAAAACAAATTGTTTC
* **
21179654 CATTCATACAAGCTTATTTTAAATAAAATAATACAAATTTGTTAATATTCCAAAAATTAATAAGT
260 CATTCATACAAGCTTATTTCAAATAAAATAATACAAATTTAATAATATTCCAAAAATTAATAAGT
* * *
21179719 AA-A-ATTTAAAAATATAA-GT-TTTAT-GAACACATTCAAATAGTTATGACTATTTGATCAATT
325 AAGAGATTTAAAAATA-AATGTGTTTGTCGACCA-ATTCAAATAGTTATGACTATTTGAACAATT
* * ** * * **
21179779 ATCTATTTTAAAT-ATTATGACTTTTTGTTTTGTCATAAACCAATTATTTTTGTTTATACAAGCA
388 ATCTATTTTAAATCATTATAACCTTTTGTTTTGTCATAAAAAAATTATTTTAGTTCATACAAGTT
* * *
21179843 TATTTGAAATAAAATAATACTAGTTTATGAATATTCCAAAAATTGATAAGTAAAAGATTT-AAAA
453 TATTTGAAATAAAATAATACTAATTTATGAATATTCCAAAAATTAAGAAGTAAAAGATTTAAAAA
* * * *
21179907 ATAAATCCGTTTACCAAGCAATTTCAAATAGTTATGACTATTTGAACAATTGTTTATTTAAAATA
518 ATAAATCCGTTTACCAAGCAAGTTCAAATAGTTATAACTATTTGAACAATTATTTACTTAAAATA
** * * *
21179972 GTTTTGACCTTTTTTTTTGTCATAAAACAATTGTTTCTATTCATACAAGT-TTATTGGGAATAAA
583 GTAATGACCATTTGTTTTGTCATAAAACAATTGTTTCTATTCATAC-AGTCTTATTCGGAATAAA
* ** *
21180036 AAAATACTAATTTATTAATATTCTAAAAATTAAT-AGATAGGAGATTTAAAAAATAAATGTGTTT
647 AAAATACTAATTTATTAACATTCTAAAAATTAATAAG-TAACAGATTTAAAAAATAAATGTGTTA
*
21180100 ACC-GAACAAGTT
711 ACCTG-ACAAGTG
* * * * *
21180112 CACATAGTTAT-ATCCATTTGAACAATTATCTGTTTGAGATCATTATGACCTTTTGTTTTGTCAT
1 CAAATAGTTATGA-CCATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCAT
* * * * * **
21180176 AAAACAATTGTTTCTATTTATGCAAAATTATTTAGAATAAAATAATACTGATCTGTTAATATTTT
65 AAAACAATTGTTTCTATTTATACAAAATTATCTAAAATAAAATAATACTAATCTATTAATATTCC
* * *
21180241 GAAAA-T-TAA-TAAGAGATTTAAAAACTAAATTTATTTA-TGGAA-ACACTTCAAATAGTTGTG
130 AAAAATTATAAGTAAGAGATTTAAAAAATAAATTTATTTACT-GAACA-ACTTCAAATAGTTATG
* * * *
21180301 ACTATTTAAATAATTGTCTATCTCAAATCATTATGA-TCTTTATTTTGTCATAAAA-AAATTGTT
193 ACTATTTAAATAATTATCTATATCAAATCAATATAACTCTTTATTTTGTCATAAAACAAATTGTT
** * **
21180364 TCTTTTCATACAAGCTTA-TTCAGATTAAAAT-ATATTAATTTAATAATATTCCAAAAAATTAAT
258 TCCATTCATACAAGCTTATTTCA-AATAAAATAATACAAATTTAATAATATTCC-AAAAATTAAT
* * *
21180427 AAGTAAGAGATTTAAAAAATAAATGTGTTTGTCGTACCAATTCAAATAGTTAAGACAATTAGAAC
321 AAGTAAGAGATTT-AAAAATAAATGTGTTTGTCG-ACCAATTCAAATAGTTATGACTATTTGAAC
* * * ** * *
21180492 AATTATTTATTTCAAATCATTCTAACCTTTTGTTAAGTCATAAAATAATTATTTCAGTTCATACA
384 AATTATCTATTTTAAATCATTATAACCTTTTGTTTTGTCATAAAAAAATTATTTTAGTTCATACA
** * * * * * **
21180557 AGTTTATTCAAAAGACAATAATAGTAATTTATTAACATTTGAAAAATTAA
449 AGTTTATTTGAAATAAAATAATACTAATTTATGAATATTCCAAAAATTAA
21180607 TGAGCAAGAG
Statistics
Matches: 995, Mismatches: 189, Indels: 62
0.80 0.15 0.05
Matches are distributed among these distances:
711 20 0.02
712 45 0.05
713 20 0.02
714 74 0.07
715 12 0.01
716 4 0.00
717 43 0.04
718 364 0.37
719 87 0.09
720 40 0.04
721 4 0.00
722 140 0.14
723 78 0.08
724 60 0.06
725 4 0.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (722 bp):
CAAATAGTTATGACCATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATA
AAACAATTGTTTCTATTTATACAAAATTATCTAAAATAAAATAATACTAATCTATTAATATTCCA
AAAATTATAAGTAAGAGATTTAAAAAATAAATTTATTTACTGAACAACTTCAAATAGTTATGACT
ATTTAAATAATTATCTATATCAAATCAATATAACTCTTTATTTTGTCATAAAACAAATTGTTTCC
ATTCATACAAGCTTATTTCAAATAAAATAATACAAATTTAATAATATTCCAAAAATTAATAAGTA
AGAGATTTAAAAATAAATGTGTTTGTCGACCAATTCAAATAGTTATGACTATTTGAACAATTATC
TATTTTAAATCATTATAACCTTTTGTTTTGTCATAAAAAAATTATTTTAGTTCATACAAGTTTAT
TTGAAATAAAATAATACTAATTTATGAATATTCCAAAAATTAAGAAGTAAAAGATTTAAAAAATA
AATCCGTTTACCAAGCAAGTTCAAATAGTTATAACTATTTGAACAATTATTTACTTAAAATAGTA
ATGACCATTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAGTCTTATTCGGAATAAAAAAA
TACTAATTTATTAACATTCTAAAAATTAATAAGTAACAGATTTAAAAAATAAATGTGTTAACCTG
ACAAGTG
Found at i:21180851 original size:261 final size:262
Alignment explanation
Indices: 21180371--21180868 Score: 585
Period size: 261 Copynumber: 1.9 Consensus size: 262
21180361 GTTTCTTTTC
* * * * *
21180371 ATACAAGCTTATTCAGATTAAAATATATTAATTTAATAATATTCCAAAAAATTAATAAGTAAGAG
1 ATACAAGCTAATTCAGAATAAAATATACTAAATTAATAATATTCCAAAAAATTAATAACTAAGAG
* * ** *
21180436 ATTTAAAAAATAAATGTGTTTGTCGTACCAATTCAAATAGTTAAGACAATTAGAACAATTATTTA
66 ATTTAAAAAATAAATCTGTTTGCCAAACCAATTCAAATAGTTAAGACAATTAGAACAAATATTTA
** * * * *
21180501 TTTCAAATCATTCTAACCTTTTGTTAAGTCATAAAATAATTATTTCAGTTCATACAAGTTTATTC
131 TTTCAAATCATTAAAACCTTTTCTTAAGTCATAAAACAATTATTTCAGTTCATACAAGCTTATGC
*
21180566 AAAAGACAATAATAGTAATTTATTAACATTTGAAAAATTAATGAGCAAGAGATTAAAAAAATTAT
196 AAAAGACAATAATAGTAATTTATTAACATTTCAAAAATTAATGAGCAAGAGATTAAAAAAATTAT
21180631 TT
261 TT
* *
21180633 ATACAGGCTAATTCAGAATAAAATAATACTAAATTAGTAATATTCC-AAAAATTAATAACTAAGA
1 ATACAAGCTAATTCAGAATAAAAT-ATACTAAATTAATAATATTCCAAAAAATTAATAACTAAGA
* * * * *
21180697 GATTT-AAAAATAAATCTGTTTGCCAAATCAGTTTAAATAGTTATGACTA-TATGAACAAATATT
65 GATTTAAAAAATAAATCTGTTTGCCAAACCAATTCAAATAGTTAAGACAATTA-GAACAAATATT
** ** * * *
21180760 TATTTTGAATTTTTAAAACCTTTTACTTTA-TCATAAAACAATTATTTTAGCTT-ATATAAGCTT
129 TATTTCAAATCATTAAAACCTTTT-CTTAAGTCATAAAACAATTATTTCAG-TTCATACAAGCTT
* * * * *
21180823 ATCGCAAAA-AGAATAATATTACTTTATTAATATTTCAAAAGTTAAT
192 AT-GCAAAAGACAATAATAGTAATTTATTAACATTTCAAAAATTAAT
21180869 AAGGGATTTA
Statistics
Matches: 195, Mismatches: 36, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
260 2 0.01
261 122 0.63
262 53 0.27
263 18 0.09
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.37
Consensus pattern (262 bp):
ATACAAGCTAATTCAGAATAAAATATACTAAATTAATAATATTCCAAAAAATTAATAACTAAGAG
ATTTAAAAAATAAATCTGTTTGCCAAACCAATTCAAATAGTTAAGACAATTAGAACAAATATTTA
TTTCAAATCATTAAAACCTTTTCTTAAGTCATAAAACAATTATTTCAGTTCATACAAGCTTATGC
AAAAGACAATAATAGTAATTTATTAACATTTCAAAAATTAATGAGCAAGAGATTAAAAAAATTAT
TT
Found at i:21180976 original size:177 final size:180
Alignment explanation
Indices: 21180631--21181493 Score: 704
Period size: 177 Copynumber: 4.8 Consensus size: 180
21180621 AAAAAATTAT
* * * * * * * * *
21180631 TTATACAGGCTAATTCAGAATAAAATAATACTAAATTAGTAATATTCCAAAAATTAATAACTAAG
1 TTATACAAGCTTATGCAAAATAAAATAAAACTAATTTATTAATATTTCAAAAAGT--TAACTAAG
* * * * *
21180696 AGATTT-AAAAATAAATCTGTTT-GCCAAATCAGTTTAAAT-AGTTATGACTATATGAACAAATA
64 AGATTTAAAAAATAAATCTGTTTATCGAAAT-AGTTCAAATAAGTTATGACTATTTGAACAATTA
* ** * ** ** *
21180758 TTTATTTTGAATTTTTAAAACCTTTTACTTTATCATAAAACAATTATTTTAGC
128 TCTATTTCAAATTGTTATTACCTTTTGTTTTATCATAAAACAATTATTTTAAC
* * * * * *
21180811 TTATATAAGCTTATCGCAAAA-AGAATAATATTACTTTATTAATATTTC-AAAAGTTAA-TAAGG
1 TTATACAAGCTTAT-GCAAAATAAAATAAAACTAATTTATTAATATTTCAAAAAGTTAACTAAGA
* * * *
21180873 GATTTAAAAAATAAAT-TAGTTTATCGAAATAGTTCAAATAAG-TATGGCCATTTGAACAACTAC
65 GATTTAAAAAATAAATCT-GTTTATCGAAATAGTTCAAATAAGTTATGACTATTTGAACAATTAT
* * * * * *
21180936 CTATTTCAATTTTTTATTACTTTTTGTTTTGTCTTAAAACAATTGTTTTTCAAC
129 CTATTTCAAATTGTTATTACCTTTTGTTTTATCATAAAACAATT-ATTTT-AAC
* * * *
21180990 --ATATAAGCTTATTCAAAATAAAATAAAACTAATTTATTAATATTTCAAGAA-TTAA-TAAGAT
1 TTATACAAGCTTATGCAAAATAAAATAAAACTAATTTATTAATATTTCAAAAAGTTAACTAAGAG
** *
21181051 ATTTAAAAAGCAAATCTGTTTA-CCAAACTAGTTCAAAT-AGTTATGACTATTTGAACAATTATC
66 ATTTAAAAAATAAATCTGTTTATCGAAA-TAGTTCAAATAAGTTATGACTATTTGAACAATTATC
* * *
21181114 TATTT-AAATTGTTATAACCTTTTGTTCTATCGTAAAACAATTATTTCT-A-
130 TATTTCAAATTGTTATTACCTTTTGTTTTATCATAAAACAATTATTT-TAAC
* * ** * * * *
21181163 TTCATACAGGCTTCTTAAAAATAAAATAATACTAATTTAGTAGTA-TTCTAAAAGTTAATAACTA
1 TT-ATACAAGCTTATGCAAAATAAAATAAAACTAATTTATTAATATTTCAAAAAG-T--TAACTA
* * * * * * * *
21181227 AGAAATTTTAAAAAATAAATCTGTTTGTTGAACTAGTTCAAA-CAGTTAAGACTATATGAATAAT
62 AGAGA-TTTAAAAAATAAATCTGTTTATCGAAATAGTTCAAATAAGTTATGACTATTTGAACAAT
* * *
21181291 TATTTATTTCAAATTGTTATGACCTTTTGTTTTATCATAAAACAATTATTTCAAC
126 TATCTATTTCAAATTGTTATTACCTTTTGTTTTATCATAAAACAATTATTTTAAC
* * * * * *
21181346 TTATACACGCTTATTCGAAATAGAATAAAACTAATTTATTAATATTTCAAAAATTTATGAGTAAG
1 TTATACAAGCTTATGCAAAATAAAATAAAACTAATTTATTAATATTTCAAAAAGTTA--ACTAAG
* * * * * *
21181411 GGATTTAGAAAATAATTCTATTTATCGAACTAGTTCAAATAA-TTATAACTATTTGAACAATTAT
64 AGATTTAAAAAATAAATCTGTTTATCGAAATAGTTCAAATAAGTTATGACTATTTGAACAATTAT
* *
21181475 CAATTTCAAATTATTATTA
129 CTATTTCAAATTGTTATTA
21181494 ATATTTAGAA
Statistics
Matches: 544, Mismatches: 108, Indels: 61
0.76 0.15 0.09
Matches are distributed among these distances:
174 1 0.00
175 9 0.02
176 87 0.16
177 169 0.31
178 15 0.03
179 10 0.02
180 40 0.07
181 121 0.22
182 83 0.15
183 9 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.39
Consensus pattern (180 bp):
TTATACAAGCTTATGCAAAATAAAATAAAACTAATTTATTAATATTTCAAAAAGTTAACTAAGAG
ATTTAAAAAATAAATCTGTTTATCGAAATAGTTCAAATAAGTTATGACTATTTGAACAATTATCT
ATTTCAAATTGTTATTACCTTTTGTTTTATCATAAAACAATTATTTTAAC
Found at i:21181484 original size:35 final size:36
Alignment explanation
Indices: 21181444--21181514 Score: 94
Period size: 35 Copynumber: 2.0 Consensus size: 36
21181434 ATCGAACTAG
21181444 TTCAAATAATTA-TAACTATTT-GAACAATT-ATCAAT
1 TTCAAATAATTATTAA-TATTTAGAA-AATTAATCAAT
*
21181479 TTCAAATTATTATTAATATTTAGAAAATTAATCAAT
1 TTCAAATAATTATTAATATTTAGAAAATTAATCAAT
21181515 AAGAGATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
35 20 0.62
36 12 0.38
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.42
Consensus pattern (36 bp):
TTCAAATAATTATTAATATTTAGAAAATTAATCAAT
Found at i:21181523 original size:107 final size:107
Alignment explanation
Indices: 21181381--21181598 Score: 251
Period size: 107 Copynumber: 2.0 Consensus size: 107
21181371 TAAAACTAAT
* * * * * * * *
21181381 TTATTAATATTTCAAAAATTTATGAGTAAGGGATTTAGAAAA-TAATTCTATTTATCGAACTAGT
1 TTATTAATATTTCAAAAATTAATCAATAAGAGATTTA-AAAAGTAAATCTATTTACCAAACCAGT
* *
21181445 TCAAATAATTATAACTATTTGAACAATTATCAATTTCAAATTA
65 TCAAATAATTATAACTATTTGAACAATTATCAATTCCAAATCA
*
21181488 TTATTAATATTT-AGAAAATTAATCAATAAGAGATTTAAAAAGTAAATCTATTTACCAAACCATT
1 TTATTAATATTTCA-AAAATTAATCAATAAGAGATTTAAAAAGTAAATCTATTTACCAAACCAGT
* * * * * *
21181552 TCAAATAGTTTTGACTATTTGTATAATTATCTATTCCAAATCA
65 TCAAATAATTATAACTATTTGAACAATTATCAATTCCAAATCA
21181595 TTAT
1 TTAT
21181599 AACCTTTTGT
Statistics
Matches: 92, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
106 5 0.05
107 87 0.95
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (107 bp):
TTATTAATATTTCAAAAATTAATCAATAAGAGATTTAAAAAGTAAATCTATTTACCAAACCAGTT
CAAATAATTATAACTATTTGAACAATTATCAATTCCAAATCA
Found at i:21182570 original size:23 final size:23
Alignment explanation
Indices: 21182541--21182597 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
21182531 TAAAAATAAT
* *
21182541 ATAAATTTATTAATATTTCAAAA
1 ATAAATTTATTAAAATTTAAAAA
*
21182564 ATTAA-TTAGTTAAAATTTAAAAA
1 ATAAATTTA-TTAAAATTTAAAAA
*
21182587 ATAAATCTATT
1 ATAAATTTATT
21182598 TTCTTAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
22 3 0.11
23 22 0.81
24 2 0.07
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (23 bp):
ATAAATTTATTAAAATTTAAAAA
Found at i:21182657 original size:181 final size:179
Alignment explanation
Indices: 21181674--21184188 Score: 1753
Period size: 181 Copynumber: 14.0 Consensus size: 179
21181664 AATAACCAAG
* * * * *
21181674 AAAA-TTAAAAAATAAATCTA-ATAGCCAAACAAGTTCAAATAGTTAAGACTATATGAACGATTA
1 AAAATTTAAAAAATAAATCTATTTA-CCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTA
* * * * * * *
21181737 TTTATTTTAAATTATTATGACCTTTTATTT-TCTTGTAAAATAATTGTTT-TGTTCATACAAGCT
65 TCTATTTCAAATCATTATGACCTTTTGTTTGTC--ATAAAACAATTGTTTCTATTCATACAAGCT
* * * * *
21181800 TATTCAAATTAAAACAATACTAATTTAATAATAGTTCAAAAA-TAAGTAAG--
128 TATTCGAATAAAAATAATACTAATTTATTAATATTTCAAAAATTAA-TAAGTT
* * * * * ** * * * *
21181850 -AGATTTAAAAATTAAATTTGTTTACCAAATTAGTTCAACTGGTTAAGACTATTAGAACAATTAT
1 AAAATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTAT
* * *
21181914 CTATTTCAAATCATTCTGACCTTTTGTTTAGTTATAAAACAATTGTTT-TAGTTCATACAAGCCT
66 CTATTTCAAATCATTATGACCTTTTGTTT-GTCATAAAACAATTGTTTCTA-TTCATACAAGCTT
* * * * **
21181978 ACTCAGAAT-CAATTAATACTAATTTATTAACA-TTCAAAAAATTAATAAGAA
129 ATTC-GAATAAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTT
* * * * * * *
21182029 ATAAATTTAAAAAAATAGATCTGTTTATCAAACAAGTTCAAATAGTTATTACAATTTGAACAGTT
1 A-AAATTT-AAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATT
* * ** * * * * *
21182094 GTCTATTT-AGAAGT-TTTAAAACCTTTTGACTTGTTATAAAATAATTGTTTCAATTAATACAAG
64 ATCTATTTCA-AA-TCATTATGACCTTTTG-TTTGTCATAAAACAATTGTTTCTATTCATACAAG
* ** * *
21182157 CTTATTTTGAAT-AAAATAATA-TAAATTTATTAATATTTTGACAATTAATAAGTA
126 CTTA-TTCGAATAAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAGTT
* * * * * *
21182211 AAAGATTTAAAAAATAAATATGTTTGCTGAACAAGTTCAAATAGTCATGACTATTTGAATAATTA
1 AAA-ATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTA
* * * **
21182276 TCTATTTCAAATCATTATGACCTTTTTCTTTTGTAATAAAACAATTGTTTC-AGTTTATATGAGC
65 TCTATTTCAAATCATTATGACC-TTTT-GTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGC
* * *
21182340 TTATTTGAAGT-AAAATAATACTAATTTATTAATATTTCAAAAATTAATGAGTA
127 TTATTCGAA-TAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTT
** * ** * * *
21182393 AGAAAACTGAAAAAGGAATCTATTTACCGAATAAGTTTAAATAGTTAAT-ACTA-TCGAAACAAT
1 A-AAATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTT-ATGACTATTTG-AACAAT
* * * * * **
21182456 TATCTATTTCAAAACATTATGACCTTTTGTTTGAGCTTAAAACAATTGGTTCTGTTCATGTAAGC
63 TATCTATTTCAAATCATTATGACCTTTTGTTTG-TCATAAAACAATTGTTTCTATTCATACAAGC
*
21182521 TTATTTCGAATAAAAATAATA-TAAATTTATTAATATTTCAAAAATTAATTAGTT
127 TTA-TTCGAATAAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAGTT
* ** *** * *
21182575 AAAATTTAAAAAATAAATCTATTTTCTTAATTTGTTCAAA-ATTTTATGACTATTTAAACAATTA
1 AAAATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATA-GTTATGACTATTTGAACAATTA
* *
21182639 TCTATTTCAAATCATTATGACCTTTTGTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTA
65 TCTATTTCAAATCATTATGACCTTTTGTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTA
* * * *
21182704 TTCGTAAT-AAAATAATACTAATTTATTAAAATTCCAAAACTTAATAAGTA
130 TTCG-AATAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTT
* ** * * *
21182754 AAAGATTTTAAAAA-AAATCTATTTACC-AAGTGAGTTTAAATAGTTATAACTATTTGAACAGTT
1 AAA-ATTTAAAAAATAAATCTATTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATT
* * * ** * *
21182817 ATTTATTTCAAATCATTATAAACTTTTGTTTTTGTCATAAAGTAGTTGTTTCTATTCATACAAGT
64 ATCTATTTCAAATCATTATGACCTTTTG--TTTGTCATAAAACAATTGTTTCTATTCATACAAGC
* * *
21182882 TTATTTGGAAT-AAAATAATACTAATTTATTAATA--TAATAAAATTAATGAGTT
127 TTA-TTCGAATAAAAATAATACTAATTTATTAATATTTCA-AAAATTAATAAGTT
* * * * * * * * * **
21182934 GGAGACTTAAGAAATTAATCTATTTACCAAACAAGTTCAAATAGTCATGTCCATTTGAATTATTA
1 -AAAATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTA
* * * * * **
21182999 TCTATTTCAAATCGTTATGA-CATTTGTTTTGTCATAAAAAAATTATTTTTATTCATACAAAATT
65 TCTATTTCAAATCATTATGACCTTTTG-TTTGTCATAAAACAATTGTTTCTATTCATACAAGCTT
*
21183063 ATTC-AAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA--T
129 ATTCGAATA-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTT
* * * * * * *
21183112 -AGATTTAAAAACTAAATCTATTGACCAAACTAGTTCAAATTGTTATGACTACTTGAACAATTAT
1 AAAATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTAT
* *
21183176 CTATCTT-AAATCATTATGATC-TTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTT
66 CTAT-TTCAAATCATTATGACCTTTTG-TTTGTCATAAAACAATTGTTTCTATTCATACAAGCTT
* * * * ** * *
21183239 ATTTGAAGAAAAATATTGCTAAACTAATAATA-TTCTAAAATTAATAAG-T
129 ATTCGAATAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTT
* * * ** * * * * * *
21183288 AATAGATTTAAAAAGTAAATGTGTTTGTCGAACCAGTTCCAATAATTAAGAATATTAGAACAATT
1 AA-A-ATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATT
* * * * **
21183353 ATCTATTTCAAATCATTTTGACTTTTTGTTTAGTTATAAAATAATTGTTTC-AGTTTGTA-AATG
64 ATCTATTTCAAATCATTATGACCTTTTGTTT-GTCATAAAACAATTGTTTCTA-TTCATACAA-G
* * * * **
21183416 CTTATTCGAA-ATAAAATAATATTATTTTATTAACA-TTCAAAAAACTAATAAGCA
126 CTTATTCGAATA-AAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTT
* ** * *
21183470 AGAAATTTAAAAAATAAATATGCTTACCGAACAAATTCAAATAGTTATGACTATTTCAACAATTA
1 A-AAATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTA
* * * * * *
21183535 TCTATTTAAAATCATTATGACCTTTTGTTTTATAATGAAACAAATGTTT-TAGTTCATAAAAGCT
65 TCTATTTCAAATCATTATGACCTTTTG-TTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCT
* * * * * * *
21183599 TATTC-AAAATAAAATAACATTACTTTATTAATATTTTAAAAATTGAGAAGTT
128 TATTCGAATA-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTT
* * * ** * *
21183651 GGAGA-TTAAAAAA-AAA--AATTTATTGAATCAA-TTCAAATAATTATG-GTCATTTGAACAAT
1 -AAAATTTAAAAAATAAATCTATTTACCGAA-CAAGTTCAAATAGTTATGACT-ATTTGAACAAT
** * * * *
21183710 TATCTATTTCAAATTGTTATGAACTTTTGTTTTGTCATAAAACAAATT-TTTTTCTTCATATAAG
63 TATCTATTTCAAATCATTATGACCTTTTG-TTTGTCATAAAAC-AATTGTTTCTATTCATACAAG
* * * *
21183774 CCTATTCGAA-ATAAAATGATACTAATTTAATAATATTTCAAAAATTAATGAG-T
126 CTTATTCGAATA-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTT
* * * *
21183827 AAGAGATTTAAAAAATAAATCTGTTTAACAAACTAGTTCAAATAGTTATGACTATTTGAACAATT
1 AA-A-ATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATT
* * * * * * * * *
21183892 ATATATTTCAAGTCGTTATAACCTTTTGTTTTGTCATAAAATATTTATTTATGTTCATACAAGCT
64 ATCTATTTCAAATCATTATGACCTTTTG-TTTGTCATAAAACAATTGTTTCTATTCATACAAGCT
* * * * *
21183957 TATTTGAA-ATAAAATAATACTAATCTAATAATATTAT-GAAAATTAATAA-CT
128 TATTCGAATA-AAAATAATACTAATTTATTAATATT-TCAAAAATTAATAAGTT
* * * * * * * * * *
21184008 AAGAGATTCAAAAAATAAATTTATTTGCC-AATCCTA-TTCAAATAGTAAAGGCTGTATGAATAA
1 AA-A-ATTTAAAAAATAAATCTATTTACCGAA--CAAGTTCAAATAGTTATGACTATTTGAACAA
* * * *
21184071 TTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAAATGCTTT-TTTTCATATAA
62 TTATCTATTTCAAATCATTATGACCTTTTG-TTTGTCATAAAACAATTG-TTTCTATTCATACAA
* * * * ** *
21184135 GTTTGTTCGGAAT-AAAATAACATTAATTTATTAATATTTTGAAAATTACTAAGT
125 GCTTATTC-GAATAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGT
21184189 GTTAGCTTTT
Statistics
Matches: 1862, Mismatches: 377, Indels: 194
0.77 0.15 0.08
Matches are distributed among these distances:
175 17 0.01
176 214 0.11
177 170 0.09
178 31 0.02
179 233 0.13
180 153 0.08
181 696 0.37
182 335 0.18
183 13 0.01
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.40
Consensus pattern (179 bp):
AAAATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTAT
CTATTTCAAATCATTATGACCTTTTGTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT
TCGAATAAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTT
Found at i:21182913 original size:360 final size:361
Alignment explanation
Indices: 21181678--21184172 Score: 1907
Period size: 358 Copynumber: 6.9 Consensus size: 361
21181668 ACCAAGAAAA
* * * * * * *
21181678 TTAAAAAATAAATCTA-ATAGCCAAACAAGTTCAAATAGTTAAGACTATATGAACGATTATTTAT
1 TTAAAAAATAAATCTATTTA-CCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
* * * * * ** * *
21181742 TTTAAATTATTATGACCTTTTATTTTCTTGTAAAATAATTGTTT-TGTTCATACAAGCTTA-TTC
65 TTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTTG
* * * * *
21181805 AAATTAAAACAATACTAATTTAATAATAGTTC--AAA--AATAAG-TAAGAGATTTAAAAATTAA
130 GAA-TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTTAA-AGATTTAAAAAATAA
* * * ** ** * * * * *
21181865 ATTTGTTTACCAAATTAGTTCAACTGGTTAAGACTATTAGAACAATTATCTATTTCAAATCATTC
193 ATCTATTTTCTGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTA
* * * * * *
21181930 TGACCTTTTGTTTAGTTATAAAACAATTGTTT-TAGTTCATACAAGCCTACTC-AGAATCAATTA
258 TGACCTTTTGTTT-GTCATAAAAAAATTGTTTCTA-TTCATACAAGCTTATTCGA-AATAAAATA
* * *
21181993 ATACTAATTTATTAACATTCAAAAAATTAATAAG-AAATAAAT
320 ATACTAATTTATTAATATTCCAAAAATTAATAAGTAAA-AGAT
* * * * * * * * *
21182035 TTAAAAAAATAGATCTGTTTATCAAACAAGTTCAAATAGTTATTACAATTTGAACAGTTGTCTAT
1 TT-AAAAAATAAATCTATTTACCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
* * ** * * *
21182100 TT-AGAAGT-TTTAAAACCTTTTGACTTGTTATAAAATAATTGTTTCAATTAATACAAGCTTATT
65 TTCA-AA-TCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATT
* ** * *
21182163 TTGAATAAAATAATA-TAAATTTATTAATATTTTGACAATTAATAAGTAAAAGATTTAAAAAATA
128 TGGAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAGTTAAAGATTTAAAAAATA
* * * * * *
21182227 AATATGTTTGCTGAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTATTTCAAATCATT
192 AATCTATTTTCTGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATT
* * * * ** * *
21182292 ATGACCTTTTTCTTTTGTAATAAAACAATTGTTTC-AGTTTATATGAGCTTATTTGAAGTAAAAT
257 ATGACC-TTTT-GTTTGTCATAAAAAAATTGTTTCTA-TTCATACAAGCTTATTCGAAATAAAAT
* * *
21182356 AATACTAATTTATTAATATTTCAAAAATTAATGAGTAAGAA-AA
319 AATACTAATTTATTAATATTCCAAAAATTAATAAGTAA-AAGAT
* * ** * *
21182399 CTGAAAAAGGAATCTATTTACCGAATAAGTTTAAATAGTTAAT-ACTA-TCGAAACAATTATCTA
1 TTAAAAAATAAATCTATTTACCGAATAAGTTCAAATAGTT-ATGACTATTTG-AACAATTATCTA
* * * * * * * **
21182462 TTTCAAAACATTATGACCTTTTG-TTTGAGCTTAAAACAATTGGTTCTGTTCATGTAAGCTTATT
64 TTTCAAATCATTATAACCTTTTGTTTTG-TCATAAAATAATTGTTTCTATTCATACAAGCTTATT
* *
21182526 TCGAATAAAAATAATA-TAAATTTATTAATATTTCAAAAATTAATTAGTTAAA-ATTTAAAAAAT
128 TGGAAT-AAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAGTTAAAGATTTAAAAAAT
* *** * *
21182589 AAATCTATTTTCTTAATTTGTTCAAA-ATTTTATGACTATTTAAACAATTATCTATTTCAAATCA
191 AAATCTATTTTCTGAACCAGTTCAAATA-GTTATGACTATTTGAACAATTATCTATTTCAAATCA
** * *
21182653 TTATGACCTTTTGTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTATTCGTAATAAAATA
255 TTATGACCTTTTGTTTGTCATAAAAAAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATA
* *
21182718 ATACTAATTTATTAAAATTCCAAAACTTAATAAGTAAAAGAT
320 ATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGAT
* * * * * *
21182760 TTTAAAAA-AAATCTATTTACC-AAGTGAGTTTAAATAGTTATAACTATTTGAACAGTTATTTAT
1 TTAAAAAATAAATCTATTTACCGAA-TAAGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
* * * *
21182823 TTCAAATCATTATAAACTTTTGTTTTTGTCATAAAGTAGTTGTTTCTATTCATACAAGTTTATTT
65 TTCAAATCATTATAACCTTTTG-TTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTT
* * ** * * *
21182888 GGAATAAAATAATACTAATTTATTAATA--TAATAAAATTAATGAGTTGGAGACTTAAGAAATTA
129 GGAATAAAATAATACTAATTTATTAATATTTCA-AAAATTAATAAGTTAAAGATTTAAAAAATAA
* ** * * * * ** *
21182951 ATCTATTTACCAAACAAGTTCAAATAGTCATGTCCATTTGAATTATTATCTATTTCAAATCGTTA
193 ATCTATTTTCTGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTA
* * * ** *
21183016 TGA-CATTTGTTTTGTCATAAAAAAATTATTTTTATTCATACAAAATTATTCAAAATAAAATAAT
258 TGACCTTTTG-TTTGTCATAAAAAAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAAT
*
21183080 ACTAATTTATTAATATTTCAAAAATTAATAA-T---AGAT
322 ACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGAT
* * * * *
21183116 TTAAAAACTAAATCTATTGACCAAACT-AGTTCAAATTGTTATGACTACTTGAACAATTATCTAT
1 TTAAAAAATAAATCTATTTACCGAA-TAAGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
* *
21183180 CTT-AAATCATTATGATC-TTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTT
65 -TTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTT
* * * ** * * *
21183243 -GAAGAAAAATATTGCTAAACTAATAATA-TTCTAAAATTAATAAG-TAATAGATTTAAAAAGTA
129 GGAA-TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTTAA-AGATTTAAAAAATA
* * * * * * *
21183305 AATGTGTTTGTC-GAACCAGTTCCAATAATTAAGAATATTAGAACAATTATCTATTTCAAATCAT
192 AATCTATTT-TCTGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * **
21183369 TTTGACTTTTTGTTTAGTTATAAAATAATTGTTTC-AGTTTGTA-AATGCTTATTCGAAATAAAA
256 TATGACCTTTTGTTT-GTCATAAAAAAATTGTTTCTA-TTCATACAA-GCTTATTCGAAATAAAA
* * * * * *
21183432 TAATATTATTTTATTAACATTCAAAAAACTAATAAGCAAGAA-AT
318 TAATACTAATTTATTAATATTCCAAAAATTAATAAGTAA-AAGAT
* ** * * *
21183476 TTAAAAAATAAATATGCTTACCGAACAAATTCAAATAGTTATGACTATTTCAACAATTATCTATT
1 TTAAAAAATAAATCTATTTACCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
* * * * * * * * **
21183541 TAAAATCATTATGACCTTTTGTTTTATAATGAAACAAATGTTT-TAGTTCATAAAAGCTTATTCA
66 TCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCTA-TTCATACAAGCTTATTTG
* * * * * * * **
21183605 AAATAAAATAACATTACTTTATTAATATTTTAAAAATTGAGAAGTTGGAGA-TTAAAAAA-AAA-
130 GAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTTAAAGATTTAAAAAATAAAT
* * * * * **
21183667 -AATTTAT-TGAATCAATTCAAATAATTATG-GTCATTTGAACAATTATCTATTTCAAATTGTTA
195 CTATTT-TCTGAACCAGTTCAAATAGTTATGACT-ATTTGAACAATTATCTATTTCAAATCATTA
* * * * * *
21183729 TGAACTTTTGTTTTGTCATAAAACAAATT-TTTTTCTTCATATAAGCCTATTCGAAATAAAATGA
258 TGACCTTTTG-TTTGTCATAAAA-AAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAA
* * * *
21183793 TACTAATTTAATAATATTTCAAAAATTAATGAGTAAGAGAT
321 TACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGAT
* * * *
21183834 TTAAAAAATAAATCTGTTTAACAAACT-AGTTCAAATAGTTATGACTATTTGAACAATTATATAT
1 TTAAAAAATAAATCTATTTACCGAA-TAAGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
* * * * * *
21183898 TTCAAGTCGTTATAACCTTTTGTTTTGTCATAAAATATTTATTTATGTTCATACAAGCTTATTTG
65 TTCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTTG
* * * * * *
21183963 AAATAAAATAATACTAATCTAATAATATTAT-GAAAATTAATAA-CTAAGAGATTCAAAAAATAA
130 GAATAAAATAATACTAATTTATTAATATT-TCAAAAATTAATAAGTTAA-AGATTTAAAAAATAA
* * * * * * * * * *
21184026 ATTTATTTGC-CAATCCTA-TTCAAATAGTAAAGGCTGTATGAATAATTATCTATTTCAAATCGT
193 ATCTATTTTCTGAA-CC-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * *
21184089 TATGACCTTTTGTTTTGTCATAAAACAAA-TGCTTT-TTTTCATATAAGTTTGTTCGGAATAAAA
256 TATGACCTTTTG-TTTGTCATAAAA-AAATTG-TTTCTATTCATACAAGCTTATTCGAAATAAAA
* *
21184152 TAACATTAATTTATTAATATT
318 TAATACTAATTTATTAATATT
21184173 TTGAAAATTA
Statistics
Matches: 1692, Mismatches: 365, Indels: 157
0.76 0.16 0.07
Matches are distributed among these distances:
354 4 0.00
355 134 0.08
356 82 0.05
357 61 0.04
358 343 0.20
359 82 0.05
360 299 0.18
361 180 0.11
362 140 0.08
363 242 0.14
364 117 0.07
365 7 0.00
366 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.40
Consensus pattern (361 bp):
TTAAAAAATAAATCTATTTACCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
TCAAATCATTATAACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTTGG
AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTTAAAGATTTAAAAAATAAATC
TATTTTCTGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA
CCTTTTGTTTGTCATAAAAAAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTA
ATTTATTAATATTCCAAAAATTAATAAGTAAAAGAT
Found at i:21184023 original size:539 final size:536
Alignment explanation
Indices: 21181636--21184188 Score: 2031
Period size: 539 Copynumber: 4.7 Consensus size: 536
21181626 GGTTCTATTG
* ** * ** * **
21181636 ATACTAATTTAAAAATATTTTGAAACTTAATAACCAAGAA-AATTAAAAAATAAATCT-AATAGC
1 ATACTAATTTAATAATATTTCAAAAATTAATAAGTAA-AAGATTTAAAAAATAAATCTGTTTA--
* * * * * * *
21181699 CAAACAAGTTCAAATAGTTAAGACTATATGAACGATTATTTATTTTAAATTATTATGACCTTTTA
63 CAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTG
* ** * *
21181764 TTTTCTTGTAAAATAATTGTTT-TGTTCATACAAGCTTA-TTCAAATTAAAACAATACTAATTTA
128 TTTTGTCATAAAATAATTGTTTATGTTCATACAAGCTTATTTGAAA-TAAAATAATACTAATTTA
* * * * * * ** *
21181827 ATAATAGT-TCAAA--AATAAGTAAGAGATTTAAAAATTAAATTTGTTTACCAAATTAGTTCAAC
192 TTAATATTATAAAATTAATAAGTAAGAGATTTAAAAAATAAATATATTTACCAAACAAGTTCAAA
* * * * *
21181889 TGGTTAAGACTATTAGAACAATTATCTATTTCAAATCATTCTGACCTTTTG-TTTAGTTATAAAA
257 TAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTA-TCATAAAA
* * * * * * * *
21181953 CAATTGTTTTAGTTCATACAAGCCTACTCAGAATCAATTAATACTAATTTATTAACA-TTCAAAA
321 CAAATGTTTTAGTTCATAAAAGCTTATTCAGAATAAAATAATATTAATTTATTAATATTTC-AAA
* * * * * * *
21182017 AATTAATAAGAAATAAATTTAAAAAAATAGATCTGTTTATCAAACAAGTTCAAATAGTTATTACA
385 AATTAATAAG--TTAAATTTAAAAAAAAAAAT-T-TATATGAAACAA-TTCAAATAGTTATGACT
* * * * ** * *
21182082 ATTTGAACAGTTGTCTATTTAGAAGT-TTTA-AAACCTTTTGACTTGTTATAAAATAATTGTTTC
445 ATTTGAACAATTATCTATTTA-AA-TCATTATGAA-CTTTTGTTTTGTCATAAAATAATTATTTC
* * *
21182145 AATTAATACAAGCTTATTTTG-AATAAAATA
507 TATTCATACAAGCTTA-TTCGAAATAAAATA
* ** * * *
21182175 ATA-TAAATTTATTAATATTTTGACAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTGCT
1 ATACT-AATTTAATAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTAC-
* * * *
21182239 GAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTTC
64 AAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC-TTTTG
* * * ** *
21182304 TTTTGTAATAAAACAATTGTTTCA-GTTTATATGAGCTTATTTGAAGTAAAATAATACTAATTTA
128 TTTTGTCATAAAATAATTGTTT-ATGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTA
* * ** * ** * * * *
21182368 TTAATATT-TCAAAAATTAATGAGTAAGAAAACTGAAAAAGGAATCTATTTACCGAATAAGTTTA
192 TTAATATTAT--AAAATTAATAAGTAAGAGATTTAAAAAATAAATATATTTACCAAACAAGTTCA
* * * * *
21182432 AATAGTTAAT-ACTA-TCGAAACAATTATCTATTTCAAAACATTATGACCTTTTGTTTGAGCTTA
255 AATAGTT-ATGACTATTTG-AACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATA
* * ** *
21182495 AAACAATTGGTTCT-GTTCATGTAAGCTTATTTC-GAATAAAAATAATATAAATTTATTAATATT
318 AAACAAAT-GTTTTAGTTCATAAAAGCTTA-TTCAGAAT-AAAATAATATTAATTTATTAATATT
* * * * **** *
21182558 TCAAAAATTAATTAGTTAAAATTTAAAAAATAAATCTATTT-TCTTAATTTGTTCAAA-ATTTTA
380 TCAAAAATTAATAAGTT-AAATTTAAAAAA-AAA--AATTTATATGAAACAATTCAAATA-GTTA
* * **
21182621 TGACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTG-TTTGTCATAAACCAATTAT
440 TGACTATTTGAACAATTATCTATTT-AAATCATTATGAACTTTTGTTTTGTCATAAAATAATTAT
*
21182685 TTCTATTCATACAAGCTTATTCGTAATAAAATA
504 TTCTATTCATACAAGCTTATTCGAAATAAAATA
* * * * * *
21182718 ATACTAATTTATTAAAATTCCAAAACTTAATAAGTAAAAGATTTTAAAAA-AAATCTATTTACCA
1 ATACTAATTTAATAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTA-CA
*** * * * * * *
21182782 AGTGAGTTTAAATAGTTATAACTATTTGAACAGTTATTTATTTCAAATCATTATAAACTTTTGTT
65 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTG-T
* * * * * *
21182847 TTTGTCATAAAGTAGTTGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATACTAATTTATT
129 TTTGTCATAAAATAATTGTTTATGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATT
* * ** * * * *
21182912 AATATAATAAAATTAATGAGTTGGAGACTTAAGAAATTAATCTATTTACCAAACAAGTTCAAATA
194 AATATTATAAAATTAATAAGTAAGAGATTTAAAAAATAAATATATTTACCAAACAAGTTCAAATA
* * * ** * * *
21182977 GTCATGTCCATTTGAATTATTATCTATTTCAAATCGTTATGA-CATTTGTTTTGTCATAAAA-AA
259 GTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAA
* * * *
21183040 ATTATTTTTA-TTCATACAAA-ATTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAA
324 A-T-GTTTTAGTTCATA-AAAGCTTATTCAGAATAAAATAATATTAATTTATTAATATTTCAAAA
* ** * * * *
21183103 ATTAATAA--TAGATTT-AAAAACTAAATCTAT-TGACCAAACTAGTTCAAATTGTTATGACTAC
386 ATTAATAAGTTAAATTTAAAAAAAAAAATTTATATG---AAAC-AATTCAAATAGTTATGACTAT
* *
21183164 TTGAACAATTATCTATCTTAAATCATTATGATC-TTTGTTTTGTCATAAAATAATTGTTTCTATT
447 TTGAACAATTATCTAT-TTAAATCATTATGAACTTTTGTTTTGTCATAAAATAATTATTTCTATT
*
21183228 CATACAAGCTTATTTGAAGA-AAAATA
511 CATACAAGCTTATTCGAA-ATAAAATA
* * ** * * * * * *
21183254 TTGCTAAACTAATAATA-TTCTAAAATTAATAAGTAATAGATTTAAAAAGTAAATGTGTTTGTCG
1 ATACTAATTTAATAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTT-ACA
* * * * * * * *
21183318 AACCAGTTCCAATAATTAAGAATATTAGAACAATTATCTATTTCAAATCATTTTGACTTTTTGTT
65 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTT
* * ** * * *
21183383 TAGTTATAAAATAATTGTTTCA-GTTTGTA-AATGCTTATTCGAAATAAAATAATATTATTTTAT
130 TTGTCATAAAATAATTGTTT-ATGTTCATACAA-GCTTATTTGAAATAAAATAATACTAATTTAT
* * * * * ** * *
21183446 TAACATTCAAAAAACTAATAAGCAAGAAATTTAAAAAATAAATATGCTTACCGAACAAATTCAAA
193 TAATATT-ATAAAATTAATAAGTAAGAGATTTAAAAAATAAATATATTTACCAAACAAGTTCAAA
* * * *
21183511 TAGTTATGACTATTTCAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTATAATGAAAC
257 TAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAAC
* * * *
21183576 AAATGTTTTAGTTCATAAAAGCTTATTCAAAATAAAATAACATTACTTTATTAATATTTTAAAAA
322 AAATGTTTTAGTTCATAAAAGCTTATTCAGAATAAAATAATATTAATTTATTAATATTTCAAAAA
* * * * * *
21183641 TTGAGAAGTTGGAGA-TTAAAAAAAAAAATTTAT-TGAATCAATTCAAATAATTATG-GTCATTT
387 TTAATAAGTT--AAATTTAAAAAAAAAAATTTATATGAAACAATTCAAATAGTTATGACT-ATTT
** * * *
21183703 GAACAATTATCTATTTCAAATTGTTATGAACTTTTGTTTTGTCATAAAACAAATT-TTTTTCTTC
449 GAACAATTATCTATTT-AAATCATTATGAACTTTTGTTTTGTCATAAAA-TAATTATTTCTATTC
* * *
21183767 ATATAAGCCTATTCGAAATAAAATG
512 ATACAAGCTTATTCGAAATAAAATA
* *
21183792 ATACTAATTTAATAATATTTCAAAAATTAATGAGTAAGAGATTTAAAAAATAAATCTGTTTAACA
1 ATACTAATTTAATAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTT-ACA
* * * * *
21183857 AACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAGTCGTTATAACCTTTTGTT
65 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTT
* * * *
21183922 TTGTCATAAAATATTTATTTATGTTCATACAAGCTTATTTGAAATAAAATAATACTAATCTAATA
130 TTGTCATAAAATAATTGTTTATGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTA
* * * * * *
21183987 ATATTATGAAAATTAATAACTAAGAGATTCAAAAAATAAATTTATTTGCCAATCCTA-TTCAAAT
195 ATATTAT-AAAATTAATAAGTAAGAGATTTAAAAAATAAATATATTTACCAA-ACAAGTTCAAAT
* * * * * * * *
21184051 AGTAAAGGCTGTATGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACA
258 AGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACA
* * * * * * **
21184116 AATGCTTTT-TTTCATATAAGTTTGTTCGGAATAAAATAACATTAATTTATTAATATTTTGAAAA
323 AATG-TTTTAGTTCATAAAAGCTTATTCAGAATAAAATAATATTAATTTATTAATATTTCAAAAA
*
21184180 TTACTAAGT
387 TTAATAAGT
21184189 GTTAGCTTTT
Statistics
Matches: 1583, Mismatches: 358, Indels: 146
0.76 0.17 0.07
Matches are distributed among these distances:
532 4 0.00
533 1 0.00
534 3 0.00
535 90 0.06
536 250 0.16
537 112 0.07
538 68 0.04
539 436 0.28
540 64 0.04
541 132 0.08
542 122 0.08
543 88 0.06
544 44 0.03
545 120 0.08
546 43 0.03
547 4 0.00
548 2 0.00
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.40
Consensus pattern (536 bp):
ATACTAATTTAATAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACAA
ACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTT
TGTCATAAAATAATTGTTTATGTTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAA
TATTATAAAATTAATAAGTAAGAGATTTAAAAAATAAATATATTTACCAAACAAGTTCAAATAGT
TATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAAAT
GTTTTAGTTCATAAAAGCTTATTCAGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAA
TAAGTTAAATTTAAAAAAAAAAATTTATATGAAACAATTCAAATAGTTATGACTATTTGAACAAT
TATCTATTTAAATCATTATGAACTTTTGTTTTGTCATAAAATAATTATTTCTATTCATACAAGCT
TATTCGAAATAAAATA
Found at i:21189874 original size:21 final size:20
Alignment explanation
Indices: 21189850--21189897 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
21189840 CTTTCATTCA
21189850 TCAAAACATGAAATTT-CTTTT
1 TCAAAACA--AAATTTCCTTTT
*
21189871 TCAAATCAAAATTTCCTTTT
1 TCAAAACAAAATTTCCTTTT
21189891 TCTAAAA
1 TC-AAAA
21189898 TTTTATACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 6 0.26
20 7 0.30
21 10 0.43
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.42
Consensus pattern (20 bp):
TCAAAACAAAATTTCCTTTT
Found at i:21192462 original size:26 final size:26
Alignment explanation
Indices: 21192426--21192478 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21192416 GTTGACTTAG
21192426 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
21192452 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
21192478 G
1 G
21192479 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:21193073 original size:184 final size:183
Alignment explanation
Indices: 21192857--21193311 Score: 488
Period size: 184 Copynumber: 2.5 Consensus size: 183
21192847 CCCTGGCTTG
* ***
21192857 CGCATTCTACCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAA
1 CGCATTCTCCCTCTCCGACCGGCTGAGCGCCCGCAC-CTCGTTTCATGGGTTGGCTTAGGCATAA
* * **
21192922 GGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCAAAGGTCAGACTGGACCAAGGG
65 GGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCAAAGATCAAACCAGACCAAGGG
* * * * *
21192987 TTGTGGCAGCTGGATCGACAGCATGCAGGG-GGGACCAA-GTCGATCCCC-AGCTTA
130 TTGCGACAGCAGGATCGACAGCACGC-GGGAGGGACCAACCT-GATCCCCGA-CTTA
* * * * *
21193041 CGCATTCTGCCTGTCCGACCGGCTGAGCGCCCGCACACTCGTTTCGTTGGTTGACTTAGGCATAC
1 CGCATTCTCCCTCTCCGACCGGCTGAGCGCCCGCAC-CTCGTTTCATGGGTTGGCTTAGGCATA-
* ** * ***
21193106 A-GAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATTGAG
64 AGGAGTTCAT-TCCATGTCTAAGCATACAAAGTTCATTCCCAGTCAAAGATCAAACCAGACCAAG
* *
21193169 GGTTGCGACAGCAGGATCGACAGCACGCGGGAGGGACCGACCTGATCCCCGACTTG
128 GGTTGCGACAGCAGGATCGACAGCACGCGGGAGGGACCAACCTGATCCCCGACTTA
* * * * * * * *
21193225 CGCATTCTCCCTCTCTGGCCAGCTGAGGGCCCGAACATCTGTTTCATGGGTTGGCTTAGGCTTAG
1 CGCATTCTCCCTCTCCGACCGGCTGAGCGCCCGCACCTC-GTTTCATGGGTTGGCTTAGGCATAA
21193290 GGAGTTCATTCCATGTCTAAGC
65 GGAGTTCATTCCATGTCTAAGC
21193312 CCCAGCCGAA
Statistics
Matches: 222, Mismatches: 41, Indels: 16
0.80 0.15 0.06
Matches are distributed among these distances:
183 8 0.04
184 208 0.94
185 6 0.03
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (183 bp):
CGCATTCTCCCTCTCCGACCGGCTGAGCGCCCGCACCTCGTTTCATGGGTTGGCTTAGGCATAAG
GAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCAAAGATCAAACCAGACCAAGGGT
TGCGACAGCAGGATCGACAGCACGCGGGAGGGACCAACCTGATCCCCGACTTA
Found at i:21193136 original size:26 final size:26
Alignment explanation
Indices: 21193100--21193152 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21193090 GTTGACTTAG
21193100 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21193126 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21193152 G
1 G
21193153 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21194165 original size:26 final size:26
Alignment explanation
Indices: 21194129--21194181 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21194119 GTTGACTTAG
*
21194129 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
21194155 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21194181 G
1 G
21194182 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21194539 original size:159 final size:159
Alignment explanation
Indices: 21194155--21194587 Score: 387
Period size: 159 Copynumber: 2.7 Consensus size: 159
21194145 CTCAGTCTAA
* * * * *
21194155 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGAT
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
21194219 AGCACGTA-AGAGGGACCGGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGACTGGCTGATCG
65 AGCACGTAGAGAGGGATCGGGTCGATCCTCGGCTTGCGCATTATACCTCTCCGACTGACTGAGCA
* **
21194283 CCCGCACGTCTATTTCATGGGTTGGTTTAG
130 CCCGAACGTCTATTTCATGGGTTGACTTAG
* * ** * * * * * *
21194313 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTAGACTGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
21194376 CAGCATGTAGAGAGGGATCGGG-CTGATCTTTGGCTTGCGTATTATGCCTCTCCGGCCT-ACTTA
64 CAGCACGTAGAGAGGGATCGGGTC-GATCCTCGGCTTGCGCATTATACCTCTCC-GACTGACTGA
*
21194439 GCACCTGAACG-CTCATTTCATGGGTTGACTTAG
127 GCACCCGAACGTCT-ATTTCATGGGTTGACTTAG
* * *
21194472 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAAGATTGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
21194537 GCACGTAG-GAGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCG
66 GCACGTAGAGAGGGATCGGGTCGATCCTCGGCTTGCGCATTATACCTCTCCG
21194588 GTCGGCTGAG
Statistics
Matches: 212, Mismatches: 53, Indels: 21
0.74 0.19 0.07
Matches are distributed among these distances:
157 4 0.02
158 85 0.40
159 117 0.55
160 6 0.03
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGAGAGGGATCGGGTCGATCCTCGGCTTGCGCATTATACCTCTCCGACTGACTGAGCAC
CCGAACGTCTATTTCATGGGTTGACTTAG
Found at i:21194633 original size:158 final size:158
Alignment explanation
Indices: 21194155--21194656 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 158
21194145 CTCAGTCTAA
* * * *
21194155 GCATAC-AGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGA
1 GCATACGA-AGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
21194218 TAGCACGTAAGAGGGACCGGGTCGATCCTCGGCTTGCGCATTCTACCTCTCC-GACTGGCTGA-T
64 CAGCACGTAGGAGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGAC-GGCTGAGT
*
21194281 CGCCCGCACG-TCTATTTCATGGGTTGGTTTAG
128 -GCCCGCACGCTC-ATTTCATGGGTTGGCTTAG
* * ** * * * * * *
21194313 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGACTGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * ** * **
21194377 AGCATGTAGAGAGGGATCGGGCTGATCTTTGGCTTGCGTATTATGCCTCTCCGGCCTACTTAGCA
65 AGCACGTAG-GAGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGTG
* * *
21194442 CCTGAACGCTCATTTCATGGGTTGACTTAG
129 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* * *
21194472 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAAGATTGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
21194536 AGCACGTAGGAGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGC
65 AGCACGTAGGAGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGTGC
** *
21194601 CCGCACGCTCATTTTGTGGGTTGGCATAG
130 CCGCACGCTCATTTCATGGGTTGGCTTAG
21194630 GCATACCG-AGTTCATTCCATGTCTAAG
1 GCATA-CGAAGTTCATTCCATGTCTAAG
21194657 CATATGGAGT
Statistics
Matches: 263, Mismatches: 70, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
157 6 0.02
158 134 0.51
159 116 0.44
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGAGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGTGCC
CGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:21195198 original size:26 final size:26
Alignment explanation
Indices: 21195168--21195220 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21195158 GTTGGCTTAT
*
21195168 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
21195194 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21195220 G
1 G
21195221 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21195275 original size:24 final size:24
Alignment explanation
Indices: 21195243--21195293 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
21195233 CGAGAGTTTT
*
21195243 GATAGCAAGACCAGCAGCAGGATC
1 GATAACAAGACCAGCAGCAGGATC
* *
21195267 GATAACAAGACCAGGAGCAGGGTC
1 GATAACAAGACCAGCAGCAGGATC
21195291 GAT
1 GAT
21195294 CCTCGGTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.22, G:0.31, T:0.10
Consensus pattern (24 bp):
GATAACAAGACCAGCAGCAGGATC
Found at i:21195400 original size:26 final size:26
Alignment explanation
Indices: 21195364--21195414 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21195354 TTGACTTAGG
*
21195364 CATACGGAGTTTATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
21195390 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
21195415 GATTAGAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:21196085 original size:26 final size:26
Alignment explanation
Indices: 21196035--21196087 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21196025 GTTGACTTAG
* *
21196035 GCATATGGAGTTCATCCTCAATCTAA
1 GCATACGGAGTTCATCCGCAATCTAA
* *
21196061 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATCCGCAATCTAA
21196087 G
1 G
21196088 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCGCAATCTAA
Found at i:21196351 original size:184 final size:183
Alignment explanation
Indices: 21195957--21196430 Score: 501
Period size: 184 Copynumber: 2.6 Consensus size: 183
21195947 AGGCAGTGAT
* ** *
21195957 CGGGTCGATCCTCGACTTACGCATTCTGCCTC-TCTGACGAGCTGAGCGCTCGCACGCTCGTTTC
1 CGGGCCGATCCTCGACTCGCGCATTCTGCCTCTTC-GACG-GCTGAGCGCCCGCACGCTCGTTTC
* * * * * *
21196021 ATAGGTTGACTTAGGCATATGGAGTTCATCCTCAATCTAAGCATACGGAGTTCATTCGCAGTCTA
64 GTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
* * *
21196086 AGATCAGACCGAACCGAGTGTTGCGACAACAGGATCGATAGCATGCAAGGGGGAC
129 AGATCAGACCGAACCGAGGGTTGCGACAACAGGATCGACAGCATACAAGGGGGAC
* * * * *
21196141 GGGGTCGATCCTCGACTTGTGCATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCGTTTCG
1 CGGGCCGATCCTCGACTCGCGCATTCTGCCTCTTCGA-CGGCTGAGCGCCCGCACGCTCGTTTCG
21196206 TGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCCCAGTCTA
65 TGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA-TTCCCAGTCTA
* ** * *
21196271 AGATC-GAATCGGGCCGAGGGTTGC-AGCAGCAGGATCGACAGCATACAGGGGGGAC
129 AGATCAG-ACCGAACCGAGGGTTGCGA-CAACAGGATCGACAGCATACAAGGGGGAC
* * * * * * * *
21196326 CGGGCCTATTCC-CGGC-CGCGCATTCTACCTCTACAGCCAGCTGAGCGCCCGCACGCCCATTTC
1 CGGGCCGA-TCCTCGACTCGCGCATTCTGCCTCTTC-GACGGCTGAGCGCCCGCACGCTCGTTTC
* * * * *
21196389 GCGGCTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
64 GTGGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGC
21196431 GCCAGACAGA
Statistics
Matches: 245, Mismatches: 37, Indels: 16
0.82 0.12 0.05
Matches are distributed among these distances:
183 3 0.01
184 173 0.71
185 66 0.27
186 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (183 bp):
CGGGCCGATCCTCGACTCGCGCATTCTGCCTCTTCGACGGCTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
ATCAGACCGAACCGAGGGTTGCGACAACAGGATCGACAGCATACAAGGGGGAC
Found at i:21196629 original size:159 final size:157
Alignment explanation
Indices: 21196245--21196640 Score: 354
Period size: 159 Copynumber: 2.5 Consensus size: 157
21196235 CCCAGTCTAA
* * **
21196245 GCATACAGAGTTCATTTCCCAGTCTAAGATC-GAATCGGGCCGAGGGTTGCAGCAGCAGGATCGA
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCAG-A-CGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * ** *
21196309 CAGCA-TACAGGGGGGACCGGGCCTATTCCCGGCCGCGCATTCTACCTCTACAGCCAGCTGAGCG
63 TAGCACTACAGGGGGGACCGGGCCGATCCCCGGCCGCGCATTAGACCTCTACAGCCAGCTGAGCA
* * *
21196373 CCCGCACGCCCATTTCGCGGCTTGGCTTAG
128 CCCGAACGCCCATTTCACGGCTTGACTTAG
* ** * ** * * *
21196403 GCATAGGGAGTTCATT-CCATGTCTAAGCGCCAGACAGATTGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGGACCGAGGGTTGTGGCAGCAGGATCGAT
* * * * * * * *
21196467 AGCACGTAGA-GGGGGATCGGGCCGATCCCCGGCTTGCGCCTTAGGCCTCT-CCGACCTGCTTAG
64 AGCAC-TACAGGGGGGACCGGGCCGATCCCCGGC-CGCGCATTAGACCTCTACAG-CCAGCTGAG
* * *
21196530 CACCCGAACGCTCATTTCATGGGTTGACTTAG
126 CACCCGAACGCCCATTTCACGGCTTGACTTAG
*
21196562 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGTGGCAGCAGGATCGATA
*
21196627 GCAC-ACAGGAGGGA
65 GCACTACAGGGGGGA
21196641 TCAAACTGAT
Statistics
Matches: 183, Mismatches: 45, Indels: 20
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.02
157 35 0.19
158 45 0.25
159 97 0.53
160 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGTGGCAGCAGGATCGATAG
CACTACAGGGGGGACCGGGCCGATCCCCGGCCGCGCATTAGACCTCTACAGCCAGCTGAGCACCC
GAACGCCCATTTCACGGCTTGACTTAG
Found at i:21196753 original size:26 final size:26
Alignment explanation
Indices: 21196717--21196772 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
21196707 TGGGTTGGCA
21196717 TAAGCATACGGAGTTCATTCC-ATGTC
1 TAAGCATACGGAGTTCATTCCTA-GTC
21196743 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCTAGTC
21196769 TAAG
1 TAAG
21196773 ATCGGACCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCTAGTC
Found at i:21197111 original size:26 final size:26
Alignment explanation
Indices: 21197075--21197127 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21197065 GTTGACTTAG
21197075 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
21197101 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
21197127 G
1 G
21197128 ATCGGATCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:21197290 original size:26 final size:26
Alignment explanation
Indices: 21197260--21197310 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21197250 TTGGCTTAGG
*
21197260 CATACGGAGTTCATTCC-ATGTCTAAC
1 CATACGAAGTTCATTCCTA-GTCTAAC
21197286 CATACGAAGTTCATTCCTAGTCTAA
1 CATACGAAGTTCATTCCTAGTCTAA
21197311 GATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCTAGTCTAAC
Found at i:21198024 original size:158 final size:157
Alignment explanation
Indices: 21197482--21198142 Score: 512
Period size: 158 Copynumber: 4.1 Consensus size: 157
21197472 CCCAATCTAA
* * * *
21197482 GCATACGGAGTTCATTCCTAGTCTAAGATCAGAACGAACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGAACGGACCGAGGGTTGCGATAGCAGGACCGACA
* * * * * * *
21197547 GCACGCAGGGGGGATC-GAGCTGATCTCCGACTTGTGCATTCTGCCTCT-TCGGCCGACTGAGCA
65 GCACGTAGAGGGGACCGGA-CAGATCCCCGACTTGCGCATTCTGCCTCTCT-GGCCGGCTGAGCA
* * * * *
21197610 CCCACATGCCCGTTTTGTGGGTTGGCTTAG
128 CCCACACGCTCATTTCGTGGGTTGACTTAG
* * * * * *
21197640 GCATAGGGAGTTCATTCCATGTCTAAGCCTCAG-CCGGACTGAAGGTTGTGGA-AGC-GAGACCG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGAACGGACCGAGGGTTG-CGATAGCAG-GACCG
* * * * * * * *
21197702 GCAGCACGTAGAGAGGGACCGGGCCGATCCTC-AGCTTGCGTATTATGCCTCTCCGGCCGGCTCA
62 ACAGCACGTAGAG-GGGACCGGACAGATCCCCGA-CTTGCGCATTCTGCCTCTCTGGCCGGCTGA
* *
21197766 GCACCTGA-ACGCTCATTTCGTGGGTTGATTTAG
125 GCACC-CACACGCTCATTTCGTGGGTTGACTTAG
** * *
21197799 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAAACGGACCGAGGGTTATGATAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAG-AACGGACCGAGGGTTGCGATAGCAGGACCGAC
* * **
21197863 AGCACGTAGAGGGGACCGGACAGATCCCCGACTT-CGGCATTCTGCCTCTCTGACCGGTTGAGTG
64 AGCACGTAGAGGGGACCGGACAGATCCCCGACTTGC-GCATTCTGCCTCTCTGGCCGGCTGAGCA
*
21197927 CCCACACGCTTATTTCGTGGGTTGACTTAG
128 CCCACACGCTCATTTCGTGGGTTGACTTAG
* *
21197957 GCATATGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGACCAGTA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGATAGCAGGACC-G-A
* * * * * * *
21198022 GCAGGATCAGTAGCATATAAGAGGTGACAGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGA
63 -CAGCA-C-GTAG------AG-GG-GACCGGACAGATCCCCGACTTGCGCATTCTGCCTCTCTGG
* * ** * *
21198087 CCGGCTGAGCGCTCGTACGCTCGTTTCATGGGTTGACTTAG
117 CCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAG
21198128 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
21198143 CCCCAATCTA
Statistics
Matches: 396, Mismatches: 74, Indels: 54
0.76 0.14 0.10
Matches are distributed among these distances:
157 5 0.01
158 170 0.43
159 120 0.30
160 7 0.02
161 3 0.01
162 1 0.00
163 4 0.01
169 2 0.01
170 3 0.01
171 80 0.20
172 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGATAGCAGGACCGACAG
CACGTAGAGGGGACCGGACAGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCC
ACACGCTCATTTCGTGGGTTGACTTAG
Found at i:21198417 original size:26 final size:26
Alignment explanation
Indices: 21198381--21198433 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21198371 GTTGGCTTAG
21198381 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21198407 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21198433 G
1 G
21198434 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21198607 original size:26 final size:26
Alignment explanation
Indices: 21198578--21198630 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21198568 GTTGGCTTAG
21198578 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
21198604 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21198630 G
1 G
21198631 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21198619 original size:197 final size:196
Alignment explanation
Indices: 21198275--21199032 Score: 798
Period size: 197 Copynumber: 3.8 Consensus size: 196
21198265 GGGTTACGAA
* *
21198275 AGCAGGATCGACAGCATGCAGA-GGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCC-
1 AGCAGGATCGACAGCATGCAGAGGGGGACCAGGCCAATCCCTGACTTGCGCATTCTGCCTCTCCA
* * *
21198338 GGTCGGCTGAGCGCTCGCACGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
*
21198403 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTACGGCAGTAGGACC
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-A-CGGATTGAGGGTTACGGCAGTAGGACC
21198468 AAC
194 AAC
* * * * *
21198471 AGTAGGATCGACAGCGTGCAGAGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCC-
1 AGCAGGATCGACAGCATGCAGAGGGGGACCAGGCCAATCCCTGACTTGCGCATTCTGCCTCTCCA
* *
21198535 GATCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * *
21198600 CTAAGCATATGGGGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTACGGTAGTAGGACT
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GA-CGGATTGAGGGTTACGGCAGTAGGACC
*
21198665 AGC
194 AAC
* * * * * * * * *
21198668 AGCAAGATCGGCAAG-ACGCA-AAGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGTCTCTCC
1 AGCAGGATCGAC-AGCATGCAGAGGGGGACCAGGCCAATCCCTGACTTGCGCATTCTGCCTCTCC
* ** * * *
21198731 AACCGGCCTCTCCGGTTGTCTGAGCGCTTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGA
65 -A---G---AT-C-G--G-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* * * ** * * *
21198796 GCTCATCCCCA-GTCTCAGCATATAGAGTTCATTCCTAGTCTAAGAT---TGGATTGAGGGTTGC
118 GTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACGGATTGAGGGTTAC
* **
21198857 AGCAACAGGACCAAC
182 GGCAGTAGGACCAAC
* * * * **
21198872 AGCATGATCGACAGCACGCAGAGGGGGACCAAGCTAATCCCTGACTTATGCATTCTGCCTCTCCA
1 AGCAGGATCGACAGCATGCAGAGGGGGACCAGGCCAATCCCTGACTTGCGCATTCTGCCTCTCCA
* * * *
21198937 GA-CGACTGAACGCCCGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTCCTTGT
66 GATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
21199001 CTAAGCATACGGAGTTCATTCCCAGTCTAAGA
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGA
21199033 GTTTGTGCCA
Statistics
Matches: 463, Mismatches: 79, Indels: 44
0.79 0.13 0.08
Matches are distributed among these distances:
191 2 0.00
192 74 0.16
195 1 0.00
196 57 0.12
197 169 0.37
198 3 0.01
201 2 0.00
203 2 0.00
204 39 0.08
205 34 0.07
206 1 0.00
208 1 0.00
209 75 0.16
210 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (196 bp):
AGCAGGATCGACAGCATGCAGAGGGGGACCAGGCCAATCCCTGACTTGCGCATTCTGCCTCTCCA
GATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACGGATTGAGGGTTACGGCAGTAGGACCAA
C
Found at i:21199015 original size:26 final size:26
Alignment explanation
Indices: 21198979--21199031 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21198969 TTTGGCTTAG
**
21198979 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21199005 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21199031 G
1 G
21199032 AGTTTGTGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21201695 original size:26 final size:26
Alignment explanation
Indices: 21201665--21201717 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21201655 GTCGACTTAG
*
21201665 GCATACGGAGTTCA-TCCGCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
21201691 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21201717 G
1 G
21201718 ATCCGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21202197 original size:26 final size:26
Alignment explanation
Indices: 21202168--21202224 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
21202158 GTTGACTTAG
21202168 GCATACAGAGCTCAACCCCAGTCTAA
1 GCATACAGAGCTCAACCCCAGTCTAA
* * *
21202194 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGCTCAACCCCAGTCTAA
21202220 GCATA
1 GCATA
21202225 TGGAGTTCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.32, G:0.18, T:0.19
Consensus pattern (26 bp):
GCATACAGAGCTCAACCCCAGTCTAA
Found at i:21202229 original size:26 final size:27
Alignment explanation
Indices: 21202183--21202247 Score: 105
Period size: 26 Copynumber: 2.4 Consensus size: 27
21202173 CAGAGCTCAA
21202183 CCCCAGTCTAAGCATACGGAGTTCA-T
1 CCCCAGTCTAAGCATACGGAGTTCATT
*
21202209 CCCCAGTCTAAGCATATGGAGTTCATT
1 CCCCAGTCTAAGCATACGGAGTTCATT
*
21202236 TCCCAGTCTAAG
1 CCCCAGTCTAAG
21202248 ATCGGATCGA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 24 0.67
27 12 0.33
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (27 bp):
CCCCAGTCTAAGCATACGGAGTTCATT
Found at i:21202721 original size:183 final size:184
Alignment explanation
Indices: 21202430--21202774 Score: 500
Period size: 183 Copynumber: 1.9 Consensus size: 184
21202420 AGGGTTGTGG
* * *
21202430 CAGCGGGATCGGTAGCACGCAGAGGGGGACTAGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCC
1 CAGCAGGATCGGTAGCACGCAGAGGGGGACTAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * * *
21202495 GACTGGCTAAACGCCCGCACGCTCATTACGTGGGTTAACTTAGGCA-ATTGGACTTCATCCCCAG
66 GACTGGCTAAACGCCCGCACACTCATTACATGGATTAACTTAGGCATA-CGGACTTCATCCCCAG
*
21202559 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTACGA
130 TCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCAAACTGGATCGAGGGTTACGA
* *
21202615 CAGCAGGATCGGTAGCACGCAG-GGGGG-CT-GGTTCGATCCCCGGCTTGCGCATTCTGCCTTTT
1 CAGCAGGATCGGTAGCACGCAGAGGGGGACTAGG-TCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * * *
21202677 CGACTGGCTGAGCGCCCGCACACTCATTTCATGGATTGACTTAGGCATACGGAGTTCATCCCCAG
65 CGACTGGCTAAACGCCCGCACACTCATTACATGGATTAACTTAGGCATACGGACTTCATCCCCAG
21202742 TCTAAGCATACGGAGTTCATTCCAGTCTAAGAT
130 TCTAAGCATACGGAGTTCATTCCAGTCTAAGAT
21202775 AGGACCAGAT
Statistics
Matches: 143, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
182 14 0.10
183 102 0.71
184 6 0.04
185 21 0.15
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
CAGCAGGATCGGTAGCACGCAGAGGGGGACTAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC
GACTGGCTAAACGCCCGCACACTCATTACATGGATTAACTTAGGCATACGGACTTCATCCCCAGT
CTAAGCATACGGAGTTCATTCCAGTCTAAGATCAAACTGGATCGAGGGTTACGA
Found at i:21202772 original size:25 final size:26
Alignment explanation
Indices: 21202721--21202772 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21202711 ATTGACTTAG
21202721 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21202747 GCATACGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21202772 G
1 G
21202773 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21203483 original size:26 final size:27
Alignment explanation
Indices: 21203434--21203487 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
21203424 TTGAACTTAG
21203434 GCATACGGAGTTCATCCCTAAGTCTAA
1 GCATACGGAGTTCATCCCTAAGTCTAA
*
21203461 GCATAC-GAGTTCCATTCCT-AGTCTAA
1 GCATACGGAGTT-CATCCCTAAGTCTAA
21203487 G
1 G
21203488 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATCCCTAAGTCTAA
Found at i:21204156 original size:26 final size:26
Alignment explanation
Indices: 21204120--21204172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21204110 GTTGACTTAG
21204120 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21204146 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21204172 G
1 G
21204173 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21205189 original size:26 final size:26
Alignment explanation
Indices: 21205159--21205211 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21205149 GTTGACTTAG
*
21205159 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21205185 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21205211 G
1 G
21205212 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21205570 original size:159 final size:158
Alignment explanation
Indices: 21205185--21205571 Score: 358
Period size: 159 Copynumber: 2.4 Consensus size: 158
21205175 CCCAGTCTAA
* *
21205185 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGACAGCAGGATTGAT
* * * * * *
21205249 ATCACGTAAGGAGGACCGAGTCGATCCTCGATTTACGCATTCTGCCTCTCCGACTGGCTGATCGC
65 AGCACGTAAGGAGGACCGAGTCGATCCCCGACTTACGCATTATGCCTCTCCGACTGACTGAGCGC
* **
21205314 TCGCACGTCCATTTCATGGGTTGGTTTAG
130 TCGAACGTCCATTTCATGGGTTGACTTAG
* * ** ** * * * *
21205343 GCATAGGGAGTTCATT-CCATGTTTAAGCCCCAG-CTAGACTGAGGGTTGTGGCAGCGGGACTGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGACAGCAGGATTGA
* * * * * * * *
21205406 CAGCACGT-AGAGAGGGATCG-GGCTGATCCCCGGCTTGCGTATTATGCCTCTCCGGC-GTACTT
64 TAGCACGTAAG-GA-GGACCGAGTC-GATCCCCGACTTACGCATTATGCCTCTCCGACTG-ACTG
21205468 AGCGC-CTGAACG-CTCATTTCATGGGTTGACTTAG
125 AGCGCTC-GAACGTC-CATTTCATGGGTTGACTTAG
* *
21205502 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGATAGCAAGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATTGATA
21205567 GCACG
66 GCACG
21205572 CGTGCCTCTC
Statistics
Matches: 176, Mismatches: 42, Indels: 21
0.74 0.18 0.09
Matches are distributed among these distances:
157 5 0.03
158 57 0.32
159 111 0.63
160 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATTGATA
GCACGTAAGGAGGACCGAGTCGATCCCCGACTTACGCATTATGCCTCTCCGACTGACTGAGCGCT
CGAACGTCCATTTCATGGGTTGACTTAG
Found at i:21205665 original size:26 final size:26
Alignment explanation
Indices: 21205626--21205678 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21205616 GTTGGCATAG
21205626 GCATACGGACTTCATTCC-ATGTCTAA
1 GCATACGGACTTCATTCCTA-GTCTAA
*
21205652 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGACTTCATTCCTAGTCTAA
21205678 G
1 G
21205679 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCTAGTCTAA
Found at i:21206166 original size:184 final size:185
Alignment explanation
Indices: 21205822--21206470 Score: 614
Period size: 184 Copynumber: 3.5 Consensus size: 185
21205812 GTTAGCTTAG
* * * * * **
21205822 GCATACGGATTTCATTCCCATTCTAAGATC-GAACAAGATCGAGGGTTACGACAACAGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGATCGAGGGTTACGACAGCAGGATCAAC
* * * * * *
21205886 AGCATGCAGGTA-GGGATCGGGCCAGTCCTCGACTT-CTGCATTTTACCTCTCCGATCGGCTGAG
65 AGCACGCAGG-AGGGGATCGGGCCGGTCCCCGACTTAC-GCATTCTACCTTTTCGATCGGCTGAG
* * **
21205949 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCATGTCTAA
128 CGACCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
21206007 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGATAGCAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGACAGCAGGATCAACA
* * *
21206072 GCACGCAGG-GGGGATCGGGTCGGTCCCCAACTTACGCATTCTACCTTTTCGATCGACTGAGCGA
66 GCACGCAGGAGGGGATCGGGCCGGTCCCCGACTTACGCATTCTACCTTTTCGATCGGCTGAGCGA
* *
21206136 CCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * ** * * *
21206191 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTTTGATAGCAAGACCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGACAGCAGGATCA--A
* ** * * * * * *
21206256 GCAGGATCGACAGCAAGACCAGCAGCAGGGCCGATCCCCGACTTACGTATTCTGCCTCTTT-GAC
64 -CA-G--C-AC-GCAGGA-GGGGATC-GGGCCGGTCCCCGACTTACGCATTCTACCT-TTTCGAT
* * *
21206320 CGGCTAAGC-ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCA-GTC
120 CGGCTGAGCGA-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTC
21206383 TAA
183 TAA
* * * *
21206386 GCATACGGAGTTCATTCCCAGTCTGAGATTAGAAT-GGATCGAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGATCGAGGGTTACGACAGCAGGATCAAC
*
21206450 AGCACGCA-GTGGGGATCGGGC
65 AGCACGCAGGAGGGGATCGGGC
21206471 TGATCCTCGG
Statistics
Matches: 375, Mismatches: 71, Indels: 37
0.78 0.15 0.08
Matches are distributed among these distances:
184 150 0.40
185 62 0.17
186 5 0.01
187 4 0.01
188 3 0.01
189 1 0.00
190 1 0.00
191 3 0.01
192 6 0.02
193 1 0.00
194 4 0.01
195 128 0.34
196 7 0.02
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGACAGCAGGATCAACA
GCACGCAGGAGGGGATCGGGCCGGTCCCCGACTTACGCATTCTACCTTTTCGATCGGCTGAGCGA
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:21206215 original size:26 final size:26
Alignment explanation
Indices: 21206165--21206217 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21206155 GTTGGCTTAG
* *
21206165 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
21206191 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
21206217 G
1 G
21206218 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:21206389 original size:26 final size:26
Alignment explanation
Indices: 21206360--21206409 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21206350 GTTGACTTAG
*
21206360 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21206386 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
21206410 GAGATTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21206908 original size:158 final size:156
Alignment explanation
Indices: 21206425--21206919 Score: 413
Period size: 158 Copynumber: 3.1 Consensus size: 156
21206415 TAGAATGGAT
* * * ** *
21206425 CGAGGGTTACGGCAGCAGGATCGACAGCACGCAGTGGGGATCGGGCTGATCCTCGGGTTGTGCAT
1 CGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTGCGCAT
* * * * * * *
21206490 TCTGCCTCTCCGGCCTGCTGAGCACCCACATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGGGT
66 TCTGCCTCTCCGACC-GCTAAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
** *
21206555 TCATTCC-ATGTCTAAGCCCCAACCGGAC
130 TCATTCCAATG--TAAGATCGAACCGGAC
* * * ** * * *
21206583 TGAGGGTTATGGAAGTGGGACCGACAGCACGTAGAGGGGGATCGGGCTGAT-CCCTAGCTTGCGC
1 CGAGGGTTACGGTAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCTGATCCCCGA-CTTGCGC
* * * * * * ** *
21206647 ATTATGCCTCTCCGACCGGCTCAGTGCCTTA-ACGTTCGTTTCGTGGGTTGATTTAGGCATACAG
64 ATTCTGCCTCTCCGACC-GCTAAGCGCC-CACACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * * *
21206711 AGTTAATTCCCAGTCTAAGATTGAAACC-GAT
127 AGTTCATT-CCAATGTAAGATCG-AACCGGAC
* * * * * * *
21206742 TGAAGGTTGCGGTAGCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCAT
1 CGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTGCGCAT
* *
21206807 TCTGCCTCTCCGACCGACTAAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGT
66 TCTGCCTCTCCGACCG-CTAAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
*
21206872 TCATTCCTAATGTAAGATCGGACCGGAC
130 TCATTCC-AATGTAAGATCGAACCGGAC
* *
21206900 CGAGGGTTGCGGTAGTAGGA
1 CGAGGGTTACGGTAGCAGGA
21206920 CCAACAGTAG
Statistics
Matches: 256, Mismatches: 70, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
157 7 0.03
158 133 0.52
159 108 0.42
160 7 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (156 bp):
CGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTGCGCAT
TCTGCCTCTCCGACCGCTAAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCAATGTAAGATCGAACCGGAC
Found at i:21207061 original size:26 final size:26
Alignment explanation
Indices: 21207032--21207084 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21207022 GTTGACTTAG
*
21207032 GCATACAGAGTTTATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
21207058 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
21207084 G
1 G
21207085 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:21207394 original size:185 final size:184
Alignment explanation
Indices: 21206973--21207428 Score: 506
Period size: 185 Copynumber: 2.5 Consensus size: 184
21206963 CCTCGGCTTA
* * * * * *
21206973 CGCATTCTGCCTCTCCGACCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
1 CGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGAGTTAGGCATAC
* * *
21207038 AGAGTTTATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGTG
66 AGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * * * * * * *
21207103 TTGCGACAATAGGATTGATAGCATACAAGGGGGACGGGGTCGATCCCCGGCTTG
131 TTGCGACAACAGGATCGACAGCACACAAGAGGGACCGAGCCGATCCCCGACCTG
* * * *
21207157 CGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGTACGCTCATTTCGTGGGTTGAGTTAGGCGTAC
1 CGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGAGTTAGGCATAC
* * * *
21207222 AGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTTCCTAGTCTAAGATC-GAACCGGGCTGAG
66 AGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA-TTCCCAGTCTAAGATCAG-ACCAGACCGAG
* * *
21207286 GGTTGC-AGCAGCAGGATCGACAGCACGCAAGAGGGACCGAGCCGATTCCCGACCTG
129 GGTTGCGA-CAACAGGATCGACAGCACACAAGAGGGACCGAGCCGATCCCCGACCTG
* * * *
21207342 CGCATTCTGCCTCTTCGGCCAGCTGAACGCCCGCACACCCATTTCGTGGGTTG-GTTTAGGCATA
1 CGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGAG-TTAGGCATA
** *
21207406 GGGAGTTCAT-TCCATGTCTAAGC
65 CAGAGTTCATCCCCA-GTCTAAGC
21207429 GCCAGGCAGA
Statistics
Matches: 226, Mismatches: 41, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
184 93 0.41
185 133 0.59
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (184 bp):
CGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGAGTTAGGCATAC
AGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
TTGCGACAACAGGATCGACAGCACACAAGAGGGACCGAGCCGATCCCCGACCTG
Found at i:21207760 original size:26 final size:26
Alignment explanation
Indices: 21207724--21207776 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21207714 GTTGGCATAG
21207724 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTAT-TCTAA
21207750 GCATACGGAGTTCATTCCTATTCTAA
1 GCATACGGAGTTCATTCCTATTCTAA
21207776 G
1 G
21207777 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTATTCTAA
Found at i:21208115 original size:26 final size:26
Alignment explanation
Indices: 21208079--21208131 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21208069 GTTGACTTAG
21208079 GCATACGGAGTTCAATCC-ATGTCTAA
1 GCATACGGAGTTCAATCCTA-GTCTAA
*
21208105 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCAATCCTAGTCTAA
21208131 G
1 G
21208132 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCTAGTCTAA
Found at i:21208274 original size:184 final size:184
Alignment explanation
Indices: 21208057--21208671 Score: 605
Period size: 184 Copynumber: 3.3 Consensus size: 184
21208047 CGCCCGTACC
*
21208057 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCATGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCATGTCTAAGCATACGGAGTTCATTC
*
21208122 CTAGTCTAAGATCAGACCGGATCGAGGGTTGCAATAGCAGGATCAACCA-CACGCAGGAGGGGTC
66 CTAGTCTAAGATCAGACCGAATCGAGGGTTGCAA-AGCAGGATCAACCAGCACGCAGGAGGGGTC
* * *
21208186 GGGCCGATCCCCAACTTACGTATTCTGCCTTTTCGATCGGCTGAGCGACCGCATG
130 GGGCCGATCCCCGACTTATGTATTCTGCCTCTTCGATCGGCTGAGCGACCGCATG
* * * *
21208241 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCATACGAAGTTCATTC
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCATGTCTAAGCATACGGAGTTCATTC
* * *
21208306 CTAGTCTAAGATCAGACTGAATCGAGGGTTTCGACAGCAAGACCAGCAGCAGGATCGACAGCACG
66 CTAGTCTAAGATCAGACCGAATCGAGGG-TT-G-CA--AAG--CAGGATCA--A-C--CAGCACG
* * * * * * * * * *
21208371 TAAGG-GGGGACCGGACCGATCCCTGGCTTATGTATTCTGCCTCTCCGATCGGCTAAACGCCCGT
119 -CAGGAGGGG-TCGGGCCGATCCCCGACTTATGTATTCTGCCTCTTCGATCGGCTGAGCGACCGC
*
21208435 ACG
182 ATG
*
21208438 CTCGTTTCATGGTTTGACTTAGGCATACGGAGTTC-ATCCCCA-GTCTAAGCATACGGAGTTCAT
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAAT--CCATGTCTAAGCATACGGAGTTCAT
* * ** *
21208501 TCCTAGTCTAAGATC-GAAACGAATCGAGGGTTGCGACAGCAGGATC-GGCAGCACGCAAGAGGG
64 TCCTAGTCTAAGATCAG-ACCGAATCGAGGGTTGC-AAAGCAGGATCAACCAGCACGCAGGAGGG
* * * * * * * * *
21208564 ATTGGGCTGATCCCCGACTTGTGCATTCTGCCTCTTCGGTTGGTTGAGC-ACCCACATG
127 GTCGGGCCGATCCCCGACTTATGTATTCTGCCTCTTCGATCGGCTGAGCGA-CCGCATG
* * * * * *
21208622 CCCATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCATGTCTAAGC
21208672 CCCAGTCGGA
Statistics
Matches: 345, Mismatches: 63, Indels: 46
0.76 0.14 0.10
Matches are distributed among these distances:
183 3 0.01
184 163 0.47
185 13 0.04
186 1 0.00
187 2 0.01
188 2 0.01
189 1 0.00
190 6 0.02
191 5 0.01
192 1 0.00
193 3 0.01
194 1 0.00
195 4 0.01
196 12 0.03
197 125 0.36
198 3 0.01
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (184 bp):
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCATGTCTAAGCATACGGAGTTCATTC
CTAGTCTAAGATCAGACCGAATCGAGGGTTGCAAAGCAGGATCAACCAGCACGCAGGAGGGGTCG
GGCCGATCCCCGACTTATGTATTCTGCCTCTTCGATCGGCTGAGCGACCGCATG
Found at i:21208294 original size:26 final size:26
Alignment explanation
Indices: 21208264--21208314 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21208254 TTGGCTTAGG
*
21208264 CATACGGAGTTCATTCC-ATGTCTAAC
1 CATACGAAGTTCATTCCTA-GTCTAAC
21208290 CATACGAAGTTCATTCCTAGTCTAA
1 CATACGAAGTTCATTCCTAGTCTAA
21208315 GATCAGACTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCTAGTCTAAC
Found at i:21208472 original size:381 final size:380
Alignment explanation
Indices: 21207968--21208669 Score: 941
Period size: 381 Copynumber: 1.8 Consensus size: 380
21207958 TCGAGAGTTG
* * * *
21207968 CAGCAGCAGGATCGACAGCACGTAGGTAGGGACCGGGCCAGTCCTCGGTTTTTGCATTTTACCTC
1 CAGCAGCAGGATCGACAGCACGTAGGTAGGGACCGGACCAGTCCTCGGCTTATGCATTCTACCTC
* * * *
21208033 TCCGGTCAGCTGAGCGCCCGTACCCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAAT-CC
66 TCCGATCAGCTAAACGCCCGTACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC-ATCCC
* * *
21208097 ATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATC-AGACCGGATCGAGGGTTGCAATAGCA
130 A-GTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGA-AACGAATCGAGGGTTGCAACAGCA
* * * *
21208161 GGATCAACCA-CACGCAGGAGGGGTCGGGCCGATCCCCAACTTACGTATTCTGCCTTTTCGATCG
193 GGATC-ACCAGCACGCAAGAGGGATCGGGCCGATCCCCAACTTACGCATTCTGCCTCTTCGATCG
* * *
21208225 GCTGAGCGA-CCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
257 GCTGAGC-ACCCACATGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
21208289 CCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGAATCGAGGGTTTCGACAGCAAGAC
321 CCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGAATCGAGGGTTTCGACAGCAAGAC
* * *
21208349 CAGCAGCAGGATCGACAGCACGTAAGG-GGGGACCGGACC-GATCC-CTGGCTTATGTATTCTGC
1 CAGCAGCAGGATCGACAGCACGT-AGGTAGGGACCGGACCAG-TCCTC-GGCTTATGCATTCTAC
* * *
21208411 CTCTCCGATCGGCTAAACGCCCGTACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATC
63 CTCTCCGATCAGCTAAACGCCCGTACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-
*
21208476 CCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAAACGAATCGAGGGTTGCGACAGC
127 CCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAAACGAATCGAGGGTTGCAACAGC
** * * * ** * *
21208541 AGGATCGGCAGCACGCAAGAGGGATTGGGCTGATCCCCGACTTGTGCATTCTGCCTCTTCGGTTG
192 AGGATCACCAGCACGCAAGAGGGATCGGGCCGATCCCCAACTTACGCATTCTGCCTCTTCGATCG
* * *
21208606 GTTGAGCACCCACATGCCCATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
257 GCTGAGCACCCACATGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
21208670 GCCCCAGTCG
Statistics
Matches: 276, Mismatches: 37, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
380 7 0.03
381 262 0.95
382 7 0.03
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (380 bp):
CAGCAGCAGGATCGACAGCACGTAGGTAGGGACCGGACCAGTCCTCGGCTTATGCATTCTACCTC
TCCGATCAGCTAAACGCCCGTACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA
GTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAAACGAATCGAGGGTTGCAACAGCAGGA
TCACCAGCACGCAAGAGGGATCGGGCCGATCCCCAACTTACGCATTCTGCCTCTTCGATCGGCTG
AGCACCCACATGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCATA
CGAAGTTCATTCCTAGTCTAAGATCAGACTGAATCGAGGGTTTCGACAGCAAGAC
Found at i:21208490 original size:26 final size:26
Alignment explanation
Indices: 21208460--21208512 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21208450 TTTGACTTAG
21208460 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21208486 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21208512 G
1 G
21208513 ATCGAAACGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21208871 original size:159 final size:155
Alignment explanation
Indices: 21208486--21208992 Score: 484
Period size: 159 Copynumber: 3.2 Consensus size: 155
21208476 CCCAGTCTAA
* *
21208486 GCATACGGAGTTCATTCCTAGTCTAAGATCGAAAC-GAATCGAGGGTTGCGACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGACT-GAGGGTTGCGA-AGCAGGATCGGC
* * * * *** *
21208550 AGCACGCA-AGAGGGATTGGGCTGATCCCCGACTTGTGCATTCTGCCTCTTCGGTTGGTTGAGCA
64 AGCACGTAGAGGGGGATCGGGC-GAT-CCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCA
*
21208614 CCCACATGCCCATTTTATGGGTTGGCTTAG
127 CCCACA-GCTCATTTTATGGGTTGGCTTAG
* ** * ** * * *
21208644 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACTGAAGGTTGTGGAAGC-GAGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAAACGGACTGAGGGTTG-CGAAGCAG-GATCGG
* * * * *
21208707 CAGCACGTAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGC
63 CAGCACGTAGAGGGGGATCGGG-CGATCC-CGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGC
* ** **
21208772 ACCTGAACA-CTCATTTCGTGGGTTGATTTAG
126 ACC--CACAGCTCATTTTATGGGTTGGCTTAG
**
21208803 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGACTGAGGGTTGCGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGACTGAGGGTTGCGA-AGCAGGATCGGCA
* * *
21208868 GCACGTAGGGGGGGATCGGGCCGATCCCTAACTTTTGCATTCTGCCTCTCCGACCGGCTGAGCAC
65 GCACGTAGAGGGGGATCGGG-CGATCCC-GACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCAC
* *
21208933 CCACATGTTTATTTTATGGGTTGGCTTAG
128 CCACA-GCTCATTTTATGGGTTGGCTTAG
* *
21208962 GCATATGGAGTTCATTCCCATTCTAAGATCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG
21208993 GATCGAAGGT
Statistics
Matches: 275, Mismatches: 59, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
157 6 0.02
158 53 0.19
159 208 0.76
160 5 0.02
161 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGACTGAGGGTTGCGAAGCAGGATCGGCAG
CACGTAGAGGGGGATCGGGCGATCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCCA
CAGCTCATTTTATGGGTTGGCTTAG
Found at i:21209294 original size:183 final size:185
Alignment explanation
Indices: 21209042--21209488 Score: 519
Period size: 185 Copynumber: 2.4 Consensus size: 185
21209032 TAGCATATAG
** * * * * * *
21209042 GGGGTGACCGGGCCAATCCCCAGCTTATGCATTCTGCCTCTTCGGTCGGCTGAGCGCTCGTACGC
1 GGGG-GACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGACTGAGCACCCGCACGC
* *
21209107 TCGTTTCATGGGTTGACTTAGGCAT-CGGAGTTCATCCCCAATCTAAGCATACGAAGTTCA-TTC
65 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTTC
* * * * * *
21209170 CTAGTCTAAGATC-AGACCAAACTGAGTGTTGC-GACAGCAAGATTGATAGCATGCAA
130 CCAGTCTAAGATCGA-ACCAAACCGAGGGTTGCAG-CAGCAAGATCGACAGCACGCAA
* *
21209226 GGGGGATC-GGATCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGACTGAGCACCCGCACGC
1 GGGGGACCGGGCT-GATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGACTGAGCACCCGCACGC
* * *
21209290 TCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTTC
65 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTTC
*** *
21209355 CCAGTCTAAGATCGAACCGGGCCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAA
130 CCAGTCTAAGATCGAACCAAACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAA
* * * * *
21209411 GGGGGACCGGGCTGATTCCCGGCCTACGCATTCTACCTCTCCGG-CCAGCTGAGCACCCGCACGC
1 GGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGA-CTGAGCACCCGCACGC
* *
21209475 CCGTGTCGTGGGTT
65 TCGTTTCGTGGGTT
21209489 TCATTCCATG
Statistics
Matches: 221, Mismatches: 35, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
182 2 0.01
183 70 0.32
184 38 0.17
185 106 0.48
186 5 0.02
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (185 bp):
GGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGACTGAGCACCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTTCC
CAGTCTAAGATCGAACCAAACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAA
Found at i:21209347 original size:26 final size:27
Alignment explanation
Indices: 21209311--21209364 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
21209301 GTTGACTTAG
21209311 GCATACGAAGTTCA-TCCCCAGTCTAA
1 GCATACGAAGTTCATTCCCCAGTCTAA
* *
21209337 GCATATGAAGTTCATTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCCAGTCTAA
21209364 G
1 G
21209365 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (27 bp):
GCATACGAAGTTCATTCCCCAGTCTAA
Found at i:21209792 original size:834 final size:848
Alignment explanation
Indices: 21208185--21209822 Score: 1891
Period size: 834 Copynumber: 1.9 Consensus size: 848
21208175 CAGGAGGGGT
* * * *
21208185 CGGGCCGATCCCCAACTTACGTATTCTGCCTTTTCGATCGGCTGAGCGACCGCATGCTCGTTTCA
1 CGGGCCAATCCCCAACTTACGCATTCTGCCTCTTCGATCGGCTGAGCGACCGCACGCTCGTTTCA
* * *
21208250 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCATACGAAGTTCATTCCTAGTCTAA
66 TGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAACCATACGAAGTTCATTCCTAGTCTAA
** *
21208315 GATCAGACTGAATCGAGGGTTTCGACAGCAAGACCAGCAGCAGGATCGACAGCACGTAAGGGGGG
131 GATCAGACCAAATCGAGGGTTT----AGC-AGACCAGCA-CAGGATCGACAGCACGCAAGGGGGG
* * * * * *
21208380 ACCGGACCGATCCCTGGCTTATGTATTCTGCCTCTCCGATCGGCTAAACGCCCGTACGCTCGTTT
190 ACCGGACCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTAAACACCCGCACGCTCGTTT
* * * *
21208445 CATGGTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCT
255 CATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* * **
21208510 AAGATCGAAACGAATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAGAGGGATTGGGCTGAT
320 AAGATCGAAACGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGAGGGACCGGGCTGAT
* ** * * *** * *
21208575 CCCCGACTTGTGCATTCTGCCTCTTCGGTTGGTTGAGCACCCACATGCCCATTTTATGGGTTGGC
385 CCCCGACCTACGCATTCTACCTCTCCGGCCAGCTGAGCACCCACACGCCC------T--GTTGGC
*
21208640 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAAGGTTGTGGAAGCGAGACC
442 -T--GCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACTGAAGGTTGTGGAAGCGAGACC
* * * *
21208705 GGCAGCACGTAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCA
504 GACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCA
** * *
21208770 GCACCTGAACACTCATTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA
569 GCACCCAAACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGA
* * * * * ** *
21208835 AACGGACTGAGGGTTGCGATAGCAGGATCGATAGCACGTAGGGGGGGATCGGGCCGATCCCTAAC
634 AACGAACCGAGGGTTGCGAAAGCAGGATCGACAGCACGCAGGAAGGGATCGGGCCAATCCCTAAC
** * * * * * *
21208900 TTTTGCATTCTGCCTCTCCGACCGGCTGAGCACCCACATGTTTATTTTATGGGTTGGCTTAGGCA
699 TTGCGCATTCTGCCTCTCCGACCAGCTGAACACCCACACGCTCATTTCATGGGTTGGCTTAGGCA
*
21208965 TATGGAGTTCATTCCCAT-TCTAAGATCGGATCGAAGGTTGTGATAGCAGGACCAGCAGCAGGAT
764 TACGGAGTTCATT-CCATGTCTAAGATCGGATCGAAGGTTGTGATAGCAGGACCAGCAGCAGGAT
21209029 CGGTAGCATATAGGGGGTGAC
828 CGGTAGCATATAGGGGGTGAC
* * * *
21209050 CGGGCCAATCCCCAGCTTATGCATTCTGCCTCTTCGGTCGGCTGAGCG-CTCGTACGCTCGTTTC
1 CGGGCCAATCCCCAACTTACGCATTCTGCCTCTTCGATCGGCTGAGCGAC-CGCACGCTCGTTTC
*
21209114 ATGGGTTGACTTAGGCAT-CGGAGTTCATCCCCA-ATCTAAGCATACGAAGTTCATTCCTAGTCT
65 ATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATATCTAACCATACGAAGTTCATTCCTAGTCT
* * * * *
21209177 AAGATCAGACCAAA-CTGAGTG-TT-GC-GA-CAGCA-A-GATTGATAGCATGCAA-GGGGGATC
129 AAGATCAGACCAAATC-GAGGGTTTAGCAGACCAGCACAGGATCGACAGCACGCAAGGGGGGACC
* * * * * **
21209234 GGATCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGACTGAGCACCCGCACGCTCGTTTTGT
193 GGACCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTAAACACCCGCACGCTCGTTTCAT
*
21209299 GGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTTCCCAGTCTAA
258 GGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCA-TTCCCAGTCTAA
* ** * *
21209364 GATCGAACCGGGCCGAGGGTTGC-AGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCTGATT
322 GATCGAAACGAACCGAGGGTTGCGA-CAGCAGGATCGACAGCACGCAAGAGGGACCGGGCTGATC
* * *
21209428 CCCGGCCTACGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCACGCCC-G-T-G-T-CGT-GGG
386 CCCGACCTACGCATTCTACCTCTCCGGCCAGCTGAGCACCCACACGCCCTGTTGGCTGCATAGGG
* * * * *
21209487 -TTTCATTCCATGTCTAAGCCCCAATCGGA-TCGAGGGTTGTGGCAGTGGGACCGACAGCACGCA
451 AGTTCATTCCATGTCTAAGCCCCAATCGGACT-GAAGGTTGTGGAAGCGAGACCGACAGCACGCA
* ** **
21209550 GAGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGTGCCCAAATG
515 GAGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCAAACA
* * * * *
21209615 CTCGA-TTCGTTGGTTGACTTAGGCATATGAAGTTCATTCCTAGTCTAAGATCGGACCGAACCGA
580 CTC-ATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAAACGAACCGA
* **
21209679 GGGTTGCGAAAGCAGGATCGACAGCATGCAGGAAGGGATCGGGCCAAT-CCTCGGCTTGCGCATT
644 GGGTTGCGAAAGCAGGATCGACAGCACGCAGGAAGGGATCGGGCCAATCCCT-AACTTGCGCATT
** * * * *
21209743 CTGCCTCTCCGGTCAGCTGAACGCCCGCACGCTCGTTTCATGTGTTGGCTTAGGCATACGGAGTT
708 CTGCCTCTCCGACCAGCTGAACACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
21209808 CATTCCATGTCTAAG
773 CATTCCATGTCTAAG
21209823 CATACGGAGT
Statistics
Matches: 654, Mismatches: 110, Indels: 49
0.80 0.14 0.06
Matches are distributed among these distances:
833 8 0.01
834 273 0.42
835 4 0.01
836 2 0.00
839 1 0.00
841 1 0.00
842 1 0.00
843 1 0.00
851 108 0.17
852 113 0.17
853 1 0.00
855 5 0.01
856 2 0.00
858 2 0.00
863 3 0.00
864 55 0.08
865 74 0.11
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (848 bp):
CGGGCCAATCCCCAACTTACGCATTCTGCCTCTTCGATCGGCTGAGCGACCGCACGCTCGTTTCA
TGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAACCATACGAAGTTCATTCCTAGTCTAA
GATCAGACCAAATCGAGGGTTTAGCAGACCAGCACAGGATCGACAGCACGCAAGGGGGGACCGGA
CCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTAAACACCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
GAAACGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGAGGGACCGGGCTGATCCCCGA
CCTACGCATTCTACCTCTCCGGCCAGCTGAGCACCCACACGCCCTGTTGGCTGCATAGGGAGTTC
ATTCCATGTCTAAGCCCCAATCGGACTGAAGGTTGTGGAAGCGAGACCGACAGCACGCAGAGGGG
GACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCAAACACTCATT
TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAAACGAACCGAGGGTTGC
GAAAGCAGGATCGACAGCACGCAGGAAGGGATCGGGCCAATCCCTAACTTGCGCATTCTGCCTCT
CCGACCAGCTGAACACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGATCGGATCGAAGGTTGTGATAGCAGGACCAGCAGCAGGATCGGTAGCATATAGGGGGT
GAC
Found at i:21209826 original size:26 final size:26
Alignment explanation
Indices: 21209796--21209848 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21209786 GTTGGCTTAG
21209796 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21209822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21209848 G
1 G
21209849 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21209868 original size:185 final size:192
Alignment explanation
Indices: 21209645--21210049 Score: 481
Period size: 197 Copynumber: 2.1 Consensus size: 192
21209635 AGGCATATGA
* *
21209645 AGTTCATTCCTAGTCTAAGATCGGACCGAACCGAGGGTT-G-C-G-A-A-AG-CAGGATCGACAG
1 AGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTAGACAGTAGACAGACAGGATCGACAG
* *
21209703 CATGCAG-GAAGGGA-TCGGGCCAAT-CCTCGGCTTGCGCATTCTGCCTCTCCGGTCAG-CTGAA
66 CATGCAGAG-AGGGACT-GCGCCAATCCCT-GGCTTGCGCATTCTGCCTCTCC-GACAGACTGAA
* *
21209764 CGCCCGCACGCTCGTTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
127 CGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
21209829 G
192 G
21209830 AGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTACGACAGTAGGACCAGCAACAGGATC
1 AGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTA-GACAGTA-GA-CAG--ACAGGATC
** * * *
21209895 GATGGCATGCAGAGGGGGACTGCGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGA
61 GACAGCATGCAGAGAGGGACTGCGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACAGACTGA
** * * * * *
21209960 GTGCCCATACGCTTGTTTCATGGGTTTGCTTAGGCATACGGAGTTCATTCGATGTCTAAGCATAT
126 ACGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
21210025 GG
191 GG
*
21210027 GGTTCATTCCCAGTCTAAGATCG
1 AGTTCATTCCCAGTCTAAGATCG
21210050 GATTGGACTG
Statistics
Matches: 185, Mismatches: 19, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
185 37 0.20
187 1 0.01
188 1 0.01
189 1 0.01
190 1 0.01
192 1 0.01
194 2 0.01
196 3 0.02
197 133 0.72
198 5 0.03
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (192 bp):
AGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTAGACAGTAGACAGACAGGATCGACAG
CATGCAGAGAGGGACTGCGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACAGACTGAACGCC
CACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
Found at i:21210065 original size:197 final size:198
Alignment explanation
Indices: 21209731--21210447 Score: 620
Period size: 197 Copynumber: 3.6 Consensus size: 198
21209721 GCCAATCCTC
* ** * * * *
21209731 GGCTTGCGCATTCTGCCTCTCCGGTC-AGCTGAACGCCCGCACGCTCGTTTCATGTGTTGGCTTA
1 GGCTTACGCATTCTGCCTCTCCGACCGACCTGAGCGCCCGCACGCTCGTTTCATGGGTTTGCTTA
* ** *
21209795 GGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAA
66 GGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGA
* * * * *
21209860 CCGAGGGTTACGACAGTAGGACCAGCAACAGGATCGATGGCATGCAGAGGGGGACTGCGCCGATC
131 CTGAGGGTTACGACAGCAGGACCAGCAGCAAGATCGATGGCATGCAGAGGGGGACTGAGCCGATC
21209925 CCT
196 CCT
* * ** *
21209928 GGCTTGCGCATTCTGCCTCTCCGACCGA-CTGAGTGCCCATACGCTTGTTTCATGGGTTTGCTTA
1 GGCTTACGCATTCTGCCTCTCCGACCGACCTGAGCGCCCGCACGCTCGTTTCATGGGTTTGCTTA
* * *
21209992 GGCATACGGAGTTCATTCGATGTCTAAGCATATGGGGTTCATTCCCAGTCTAAGATCGGATTGGA
66 GGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGA
** * * * * *
21210057 CTGAGGGTTACGGTAGCAGGACCAGCAGCAAGATCGGTAGG-ATGCA-AAGAGGA-TCGGGCTGA
131 CTGAGGGTTACGACAGCAGGACCAGCAGCAAGATCGAT-GGCATGCAGAGGGGGACT-GAGCCGA
21210119 T-CCT
194 TCCCT
* ** * * * * *
21210123 CGGTTTACGCATTCTATCTCTCTGACCGACCTCTTCGGTTGTCTGAGCACTTGGACGCTTGTTTC
1 -GGCTTACGCATTCTGCCTCTCCGACCGA-C-C-T--G-AG-C---GC-C-CGCACGCTCGTTTC
* * * * *
21210188 GTGGG-TTGACTTAGGCATACGGAGCTCATCCCCA-GTCTCAGCATACAGAGTTCATTCCCAGTC
53 ATGGGTTTG-CTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * ** *
21210251 T-A-A---GATTGGATTGAGGGTTACGACAGCAGGACCAACAGCATGATCGACAGCACGCAGAGG
116 TAAGATCGGATTGGACTGAGGGTTACGACAGCAGGACCAGCAGCAAGATCGATGGCATGCAGAGG
**
21210311 GGGACCAAGCCGATCCCT
181 GGGACTGAGCCGATCCCT
* * * * *
21210329 GACTTATGCATTCTGCCTCTCC-AGCCG-GCTGAGCGCCTGCACGCTCGTTTCGT-GGTTTGGCT
1 GGCTTACGCATTCTGCCTCTCCGA-CCGACCTGAGCGCCCGCACGCTCGTTTCATGGGTTT-GCT
* *
21210391 TAGGCATACGGTGTTCATTCCTTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
64 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
21210448 GTTTGTGCCA
Statistics
Matches: 415, Mismatches: 76, Indels: 61
0.75 0.14 0.11
Matches are distributed among these distances:
191 4 0.01
192 62 0.15
193 3 0.01
194 3 0.01
195 4 0.01
196 34 0.08
197 148 0.36
198 4 0.01
199 2 0.00
200 1 0.00
201 1 0.00
202 2 0.00
203 2 0.00
204 43 0.10
205 29 0.07
206 3 0.01
207 3 0.01
208 5 0.01
209 60 0.14
210 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (198 bp):
GGCTTACGCATTCTGCCTCTCCGACCGACCTGAGCGCCCGCACGCTCGTTTCATGGGTTTGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGA
CTGAGGGTTACGACAGCAGGACCAGCAGCAAGATCGATGGCATGCAGAGGGGGACTGAGCCGATC
CCT
Found at i:21210242 original size:26 final size:26
Alignment explanation
Indices: 21210202--21210251 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
21210192 GTTGACTTAG
*
21210202 GCATACGGAGCTCATCCCCAGTCTCA
1 GCATACAGAGCTCATCCCCAGTCTCA
* *
21210228 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGCTCATCCCCAGTCT
21210252 AAGATTGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.34, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAGTCTCA
Found at i:21210432 original size:26 final size:26
Alignment explanation
Indices: 21210394--21210446 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21210384 TTTGGCTTAG
* **
21210394 GCATACGGTGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21210420 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21210446 G
1 G
21210447 AGTTTGTGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21217445 original size:158 final size:156
Alignment explanation
Indices: 21217109--21217551 Score: 446
Period size: 157 Copynumber: 2.8 Consensus size: 156
21217099 GTGATAATAG
* * * *
21217109 GATCGACAGCACGT-AGGGGGACCGAGCCAATCCCCAGCTTACGTCATTCTGCCTCTCCGGCCGG
1 GATCGACAGCACGTGAGGGGGACCGGGCCAAT-CCCGGCTTGCG-CATTCTGCCTCTCCGACCGG
* * * *
21217173 CTGAGCGCCCGTACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAG
64 CTAAGCGCCCGTACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
* * * * *
21217237 CCCAGCCGGATCGAGGGTTGTGGCAGCGG
128 ACCAGCCGGACCGAGGGTTGCGACAGCGA
* * * * * * *
21217266 GACCGACAGCATGCAGAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGCCCAG
1 GATCGACAGCACG-TGAGGGGGACCGGGCCAATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGG
* * * * *
21217331 CTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTGAGA
64 CTAAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
* * *
21217396 CCAGATCGGACCGAGGTTTGCGACAGTGA
129 CCAG-CCGGACCGAGGGTTGCGACAGCGA
* * * *
21217425 GATCGACAGCACGTG-GGGGGGCTGGGCCGATCTCCGGCTTGCGCATTCTGCCTCTCCGACTGGC
1 GATCGACAGCACGTGAGGGGGACCGGGCCAATC-CCGGCTTGCGCATTCTGCCTCTCCGACCGGC
* ** *
21217489 TAAGCACTTGTATGCTCGTTTCATGGGTTGGCTTAGGCATACAGG-GTTCATTCC-ATGTCTAAG
65 TAAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC-GGAGTTCATTCCTA-GTCTAAG
21217552 CATATCGAGT
Statistics
Matches: 232, Mismatches: 46, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 98 0.42
158 82 0.35
159 51 0.22
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
GATCGACAGCACGTGAGGGGGACCGGGCCAATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCT
AAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGACC
AGCCGGACCGAGGGTTGCGACAGCGA
Found at i:21217872 original size:26 final size:26
Alignment explanation
Indices: 21217842--21217904 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
21217832 ACGTATTATG
*
21217842 CCCAGCCTAAGCATACGGAGTTCATC
1 CCCAGTCTAAGCATACGGAGTTCATC
*
21217868 CCCAGTCTAAGCATACGGAGTTCATT
1 CCCAGTCTAAGCATACGGAGTTCATC
21217894 CCCAGTCTAAG
1 CCCAGTCTAAG
21217905 ATTGGATCAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (26 bp):
CCCAGTCTAAGCATACGGAGTTCATC
Found at i:21218182 original size:159 final size:158
Alignment explanation
Indices: 21218019--21218381 Score: 415
Period size: 159 Copynumber: 2.3 Consensus size: 158
21218009 CGCATGCCCG
* * * * ** *
21218019 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCATCTGGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCAAACCAGACCGAGGGTT
** * * *
21218084 ATGGTAGCGGGATCGACAGCACGTAGACGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCT
66 ACAGTAGCAGGATCGACAGCACGTAGACGGGGACCGGGCCAATCCCCGG-ATGCGCATTATGCCT
* *
21218149 CTT-CAACCTGCTTAGCGCCCGCACACTCA
130 -TTCCAACCGGCTGAGCGCCCGCACACTCA
* * **
21218178 TTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCAAACCAGACCGAGGGT
* * ** * * *
21218242 TGCAGTAGCAGGATCGATAGCACGTAGGGGGGGACCGGGCCAATCCCCGGATGTGCATTCTGTCT
65 TACAGTAGCAGGATCGACAGCACGTAGACGGGGACCGGGCCAATCCCCGGATGCGCATTATGCCT
* * * *
21218307 TTCCAGCCGGCTGAGTGCCCGCACGCTCG
130 TTCCAACCGGCTGAGCGCCCGCACACTCA
*
21218336 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATTTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
21218382 ATACGGAGTT
Statistics
Matches: 168, Mismatches: 33, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
157 5 0.03
158 69 0.41
159 91 0.54
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCAAACCAGACCGAGGGTT
ACAGTAGCAGGATCGACAGCACGTAGACGGGGACCGGGCCAATCCCCGGATGCGCATTATGCCTT
TCCAACCGGCTGAGCGCCCGCACACTCA
Found at i:21218404 original size:26 final size:26
Alignment explanation
Indices: 21218354--21218406 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21218344 GTTGGCTTAG
*
21218354 GCATACGAAGTTCATTCCATTTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
21218380 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGAAGTTCATTCCAT-GTCTAA
21218406 G
1 G
21218407 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:21219112 original size:26 final size:26
Alignment explanation
Indices: 21219076--21219128 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21219066 GTTGAATTAG
21219076 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21219102 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21219128 G
1 G
21219129 ATCGGGTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21219574 original size:156 final size:156
Alignment explanation
Indices: 21219102--21219601 Score: 476
Period size: 159 Copynumber: 3.2 Consensus size: 156
21219092 CCCAGTCTAA
* * *
21219102 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGGTCGG-GCTGAGGGTTACGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-AGTCGGATC-GAGGGTTATGGCAGCAGGATCGA
* * * * *
21219165 CAGCACGTAGGGGGGATCGGGCCGATCCTC-AGCTTGTGCATTCTACCTCTCCGGTCGACTGAGC
63 CAGCACGCAGGGGGGAT-GGGCCGATCCCCGA-CTTGCGCATTCTACCTCTTCGGTCGGCTGAGC
* *
21219229 GCCCGCACGC-CTATTTCATGGGTTGGCTTAG
126 GCCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * *
21219260 GCATAGGGAGTTCATTCCATGTCAAAGCCCCAGTCAGATCGAGGGTTGTGGCAGC-GAGA-CCAG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGTCGGATCGAGGGTTATGGCAGCAG-GATCGA-
* * * * * * * * * *
21219323 CAGCACGCAGAGAGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGC
63 CAGCACGCAG-GGGGGA-TGGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGGTCGGCTGAGC
* * *
21219388 GCCTGCACACTCGTTTCGTGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
21219419 GCATACGGAGTTCATTCCCA-GTCTAAGATTAGACTGGATCGAGGGTT-TGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGTC-GGATCGAGGGTTATGGCAGCAGGATCGAC
* * * * *
21219482 AGCACGCAGGGGGGATGGGTCGATCCCCGACCTGCGCATTCTACCTCTTCGATCGGTTGAGCACC
64 AGCACGCAGGGGGGATGGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGGTCGGCTGAGCGCC
21219547 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
21219575 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21219602 CATATGGAGT
Statistics
Matches: 270, Mismatches: 58, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
155 3 0.01
156 83 0.31
157 11 0.04
158 70 0.26
159 99 0.37
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGTCGGATCGAGGGTTATGGCAGCAGGATCGACAG
CACGCAGGGGGGATGGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGGTCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21219971 original size:26 final size:26
Alignment explanation
Indices: 21219942--21219992 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21219932 TTGACTTAGG
*
21219942 CATACGGTGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGTCTAAA
*
21219968 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
21219993 GATCGGACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAA
Found at i:21221297 original size:158 final size:158
Alignment explanation
Indices: 21220024--21221419 Score: 577
Period size: 159 Copynumber: 8.8 Consensus size: 158
21220014 ACGACAGCAA
* * * * * * * *
21220024 GATCAACAGCAAGCAG-GGGGG-CCGAGCTGATCCCCGGCTTGCGTATTCTGCCTCTTCGG-TTG
1 GATCGACAGCACGCAGAGGGGGACCGGGCTAAT-CCCGGCTTACGCATTCTGCCTCTCCGGCTCG
* * * * *
21220086 GCTGAGCGCCCGCACTCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
65 GCTGAGTG-CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * *
21220151 CCCCAGCCGGACCGAGGGTTGTGGTAGTGG
129 CCCCAGCCAGACCCAGGGTTGTAGTAGCGG
* * * * * * * *
21220181 GACCGACAGCACGCAGAGGGGGACC-GGATCGATCCCTGGCTTGCGTATTATACCTCTTCGGC-C
1 GATCGACAGCACGCAGAGGGGGACCGGGCT-AATCCC-GGCTTACGCATTCTGCCTCTCCGGCTC
** * ** * * * *
21220244 CACTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTGATTCCCA-GTCTA
64 GGCTGAG-TGCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
** * ** * ** ** *
21220308 AGATCGAAACGGACTGAGGGTTGCGGTAGCAG
127 AGCCCCAGCCAGACCCAGGGTTGTAGTAGCGG
* * * *** *
21220340 GATCGACAACACGCAGAGGGGTATCGGGCCGGTCCCTAGCTTACGCATTCTGCCTCTCCTGGC-C
1 GATCGACAGCACGCAGAGGGGGACCGGGCTAATCCC-GGCTTACGCATTCTGCCTCTCC-GGCTC
** ** * * * * * *
21220404 CACTGAGCACCCACACGCTCG-TTCATGGGTTGACTTAGGCATGCGAAGTTCATTCCATGTCTCA
64 GGCTGAG-TGCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * *
21220468 GCCCCAGTCGGATCGAGGGTTGTGGCAGCGCGG
128 GCCCCAGCCAGACCCAGGGTTGTAGTA--GCGG
* * * ** * * ** *
21220501 GACCGACAGCACGTAGAGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCC-TATTG
1 GATCGACAGCACGCAGAGGGGGACCGGGCTAAT-CCCGGCTTACGCATTCTGCCTCTCCGGCTCG
* * * *
21220565 GGTGAGTGCTCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GCTGAGTGC-CGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *** *
21220630 CCCCTATCGA-ACTGGGGGTTGTGGCAGCAGAACCGACAGCGG
129 CCCC-AGCCAGACCCAGGGTTGT---------A--G-TAGCGG
* * * * * * * * * *
21220672 GATTGGCAGCACGTAGAGGGGGATCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCTGGCT-G
1 GATCGACAGCACGCAGAGGGGGACCGGGCTAAT-CCCGGCTTACGCATTCTGCCTCTCCGGCTCG
*** * * * *
21220736 AAGGAGT---TCA-TCCC----CA---G-T--C-TAAGCATACGGAGTTCATTCCCA-ATCTAAG
65 GCTGAGTGCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
** * ** * * * *
21220785 -ATCGGACCAGACTGAGGGTTATGGCAGCAG
129 CCCCAG-CCAGACCCAGGGTTGTAGTAGCGG
** * * * * *
21220815 GATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCTGACTTACGTAATCTACCTCTCC-GATCG
1 GATCGACAGCACGCAGAGGGGGACCGGGCTAATCCC-GGCTTACGCATTCTGCCTCTCCGGCTCG
* * * * *
21220878 ACTGAGTGCTCGCACTCCCGTTTCATGGGTTGGCTTAGGCATAGGGTGTCCATTCCATGTCTAAG
65 GCTGAGTGC-CGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* ** *
21220943 CCCCAGCCGGACCTGGGGTTGTGGTAGCGG
129 CCCCAGCCAGACCCAGGGTTGTAGTAGCGG
* * * * * * * * * *
21220973 GACCGGCAGCACGTAGTGGGGTACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCTGG-TCG
1 GATCGACAGCACGCAGAGGGGGACCGGGCTAAT-CCCGGCTTACGCATTCTGCCTCTCCGGCTCG
* * * * *
21221037 GTTCG-GTGCCTGAACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTCTA
65 GCT-GAGTGCC-GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTA
** * * * * *
21221100 AG-ATCAGACCTGATCGAGGGTTGCAGTAGCAG
127 AGCCCCAG-CCAGACCCAGGGTTGTAGTAGCGG
* *
21221132 GATCGATAGCACGCAG-GGGGGATCGGGCCT-ATCTCCGGCTTACGCATTCTGCCTCTCCGGCT-
1 GATCGACAGCACGCAGAGGGGGACCGGG-CTAATC-CCGGCTTACGCATTCTGCCTCTCCGGCTC
* * *
21221194 GGCTGAGCT-CCGGCACGCCCGTTTCGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
64 GGCTGAG-TGCC-GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * *
21221258 AGCCCCAGCCAGACCCAGGGTTGTTGCAACGG
127 AGCCCCAGCCAGACCCAGGGTTGTAGTAGCGG
* ** * * * *
21221290 GATCGATAGCACATAGAGGGGGATCGGGCTAATCCTCGGC-TAGCGCATTTTGCTTCTCCGAC-C
1 GATCGACAGCACGCAGAGGGGGACCGGGCTAATCC-CGGCTTA-CGCATTCTGCCTCTCCGGCTC
* * * * *
21221353 GGCTGAGCGCCCCTACGCTCGTTTCGTGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAA
64 GGCTGAGTGCCGC-ACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
21221418 GC
128 GC
21221420 ATACGAAGTT
Statistics
Matches: 937, Mismatches: 228, Indels: 146
0.71 0.17 0.11
Matches are distributed among these distances:
141 5 0.01
142 35 0.04
143 18 0.02
144 1 0.00
146 2 0.00
147 4 0.00
151 2 0.00
154 4 0.00
155 35 0.04
156 3 0.00
157 21 0.02
158 188 0.20
159 403 0.43
160 47 0.05
161 99 0.11
162 5 0.01
166 2 0.00
167 2 0.00
171 57 0.06
172 2 0.00
173 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GATCGACAGCACGCAGAGGGGGACCGGGCTAATCCCGGCTTACGCATTCTGCCTCTCCGGCTCGG
CTGAGTGCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGCCAGACCCAGGGTTGTAGTAGCGG
Found at i:21221338 original size:317 final size:316
Alignment explanation
Indices: 21220758--21221418 Score: 731
Period size: 317 Copynumber: 2.1 Consensus size: 316
21220748 CCCAGTCTAA
* * **
21220758 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTATGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAGGATCGACA
*
21220823 GCACGCAGGGGGGACCGGGCCGATCCCTGACTTACGTAATCTACCTCTCCGATCGACTGAGTGCT
65 GCACGCAGGGGGGACCGGGCCGATCCCTGACTTACGCAATCTACCTCTCCGATCGACTGAGTGCT
* * *
21220888 CGCACTCCCGTTTCATGGGTTGGCTTAGGCATAGGGTGTCCATTCCATGTCTAAGCCCCAGCCGG
130 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAGCCAG
** * * * * * * * *
21220953 ACCTGGGGTTGTGGTAGCGGGACCGGCAGCACGTAGTGGGGTACCGGGCTGATCCCCAGCTTGCG
195 ACCCAGGGTTGTGGCAACGGGACCGACAGCACATAGAGGGGGACCGGGCTAATCCCCAGCTAGCG
* ** * * ** *
21221018 CATTATGCCTCTCTGGTCGGTTCG-GTGCCTGAACGCTCGTTTTATGGGTTGACTTAG
260 CATTATGCCTCTCCGACCGGCT-GAGCGCCCCAACGCTCGTTTCATGGGTTGACTTAG
* * * *
21221075 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCTGA-TCGAGGGTTGCAGTAGCAGGATCGAT
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCAGACT-GAGGGTTACAGCAGCAGGATCGAC
* * * * * * *
21221139 AGCACGCAGGGGGGATCGGGCCTATCTCC-GGCTTACGCATTCTGCCTCTCCG-GCTGGCTGA--
64 AGCACGCAGGGGGGACCGGGCCGATC-CCTGACTTACGCAATCTACCTCTCCGATC-GACTGAGT
* * *
21221200 GCTCCGGCACGCCCGTTTCGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
127 GCT-C-GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCA
* * * * * *
21221265 GCCAGACCCAGGGTTGTTGCAACGGGATCGATAGCACATAGAGGGGGATCGGGCTAATCCTCGGC
190 GCCAGACCCAGGGTTGTGGCAACGGGACCGACAGCACATAGAGGGGGACCGGGCTAATCCCCAGC
* * * * *
21221330 TAGCGCATTTTGCTTCTCCGACCGGCTGAGCGCCCCTACGCTCGTTTCGTGGGTTGGCTTAG
255 TAGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCCAACGCTCGTTTCATGGGTTGACTTAG
*
21221392 ACATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
21221419 CATACGAAGT
Statistics
Matches: 284, Mismatches: 52, Indels: 16
0.81 0.15 0.05
Matches are distributed among these distances:
315 3 0.01
316 7 0.02
317 272 0.96
318 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCTGACTTACGCAATCTACCTCTCCGATCGACTGAGTGCTC
GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAGCCAGA
CCCAGGGTTGTGGCAACGGGACCGACAGCACATAGAGGGGGACCGGGCTAATCCCCAGCTAGCGC
ATTATGCCTCTCCGACCGGCTGAGCGCCCCAACGCTCGTTTCATGGGTTGACTTAG
Found at i:21221422 original size:26 final size:26
Alignment explanation
Indices: 21221393--21221444 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21221383 TTGGCTTAGA
*
21221393 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
21221419 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
21221445 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:21222624 original size:26 final size:26
Alignment explanation
Indices: 21222587--21222639 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21222577 ATTGGCTTAG
*
21222587 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
21222613 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21222639 G
1 G
21222640 TTCAAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21223174 original size:26 final size:26
Alignment explanation
Indices: 21223138--21223190 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21223128 GTTGGATTAG
*
21223138 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
*
21223164 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
21223190 G
1 G
21223191 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:21223884 original size:26 final size:26
Alignment explanation
Indices: 21223855--21223907 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21223845 GTTGACTTAG
*
21223855 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21223881 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21223907 G
1 G
21223908 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21224386 original size:25 final size:26
Alignment explanation
Indices: 21224346--21224397 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
21224336 TTTGGCTTAG
*
21224346 GCATACGGTGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
21224372 GCATAC-GAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21224397 G
1 G
21224398 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21224580 original size:26 final size:26
Alignment explanation
Indices: 21224544--21224594 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21224534 TGACTTAGGG
21224544 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
* *
21224570 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
21224595 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:21225068 original size:159 final size:157
Alignment explanation
Indices: 21224568--21225068 Score: 503
Period size: 159 Copynumber: 3.2 Consensus size: 157
21224558 CCCAGTCTAA
* *
21224568 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCA-ATCGGACTGAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
21224632 AGCACGTAG-GGGGGATCGGGTCGATCCCTGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGCG
64 AGCACGTAGAGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCG
* * * *
21224696 CCCGTACGCCCATTTCATGGGTTGGCTTAG
129 CCC-AATGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * * *
21224726 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGATTGTGGTAGCGGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAATCGGACTGAGGGTTGCGGTAGCAGGATCGACA
*** * * * *
21224791 GCACGTAGAGGGGGACCAAACCGATCCCTGGTTTGCGCATTATGCCTCTCCGGTTGGCTCAA-CG
65 GCACGTAGAGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGTCGGCT-AAGCG
*
21224855 CCCGAATGCTCGTTTTATGGG-TGGACTTAG
129 CCC-AATGCTCGTTTCATGGGTTGG-CTTAG
* * *
21224885 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGACTGAGGGTTGCAGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-AATCGGACTGAGGGTTGCGGTAGCAGGATCGAC
*
21224949 AGCACGTAGAGGGGGACCGGGCC-AGT-CCTAGGCTTACGCATTCTGGCTCTCCGGTCGGCTAAG
64 AGCACGTAGAGGGGGACCGGGCCGA-TCCCT-GGCTTACGCATTCTGCCTCTCCGGTCGGCTAAG
* * * * *
21225012 TGTCCACATGTTCGTTTCGTGGGTTGGCTCAG
127 CGCCCA-ATGCTCGTTTCATGGGTTGGCTTAG
21225044 GCATACGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCATGTCTA
21225069 GCCATACGGA
Statistics
Matches: 275, Mismatches: 55, Indels: 25
0.77 0.15 0.07
Matches are distributed among these distances:
158 71 0.26
159 197 0.72
160 7 0.03
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAATCGGACTGAGGGTTGCGGTAGCAGGATCGACAG
CACGTAGAGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
CAATGCTCGTTTCATGGGTTGGCTTAG
Found at i:21225081 original size:26 final size:26
Alignment explanation
Indices: 21225045--21225094 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
21225035 TTGGCTCAGG
21225045 CATACGGAGTTCA-TTCCATGTCTAGC
1 CATACGGAGTTCATTTCCA-GTCTAGC
21225071 CATACGGAGTTCATTTCCAGTCTA
1 CATACGGAGTTCATTTCCAGTCTA
21225095 AGTTCAGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (26 bp):
CATACGGAGTTCATTTCCAGTCTAGC
Found at i:21225269 original size:26 final size:26
Alignment explanation
Indices: 21225240--21225292 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21225230 GTTGGCTTAG
*
21225240 GCATACGGAGTTTAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
**
21225266 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
21225292 G
1 G
21225293 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:21225771 original size:26 final size:26
Alignment explanation
Indices: 21225741--21225793 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21225731 GTTGCCTTAG
21225741 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21225767 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21225793 G
1 G
21225794 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21226148 original size:709 final size:708
Alignment explanation
Indices: 21223805--21227737 Score: 3398
Period size: 709 Copynumber: 5.6 Consensus size: 708
21223795 ACGCATCCTG
* * * * * *
21223805 CCTCTCTGGTCGGCTGAGCGTCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTAT
1 CCTCTCCGATCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
21223870 CCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGACCGAAGGGTTGCGACA
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CG-AGGGTTGCGATA
* * * * * * *
21223935 ACAGGATCGACAACACGCAAGGGGGATCGGGTCGATCC-CTGGCTTACCCATTCTGCCTCTCCGA
129 GCAGGATCGACAGCACGTAAGGGGGATCGAGCCGATCCTC-GGCTTACGCATTCTGCCTCTCTGA
* * *
21223999 TCGACTGAGCACCCGCATGCCCATCTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
193 TCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * * * * *
21224064 AAGCCCCAACCAGACTGAAGGTTGTGGC-AGCGGGACC-GACAGCATGTAGAGGGGGACCGGGTC
258 AAGCCCCAGCCAGACCGAGGGTTGTGGCTAGCGGGACCAG-CAGCACGCAGAGGAGGACCAGGTC
* * * **
21224127 GATCCTCGGCTTGCACATTATGCCTCTCCGACCGGCTCAGCGCTTGAACGTTCATTTCATGGGTT
322 GATCC-CGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACGTTCATTTCATGGGTT
* * * *
21224192 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGAACTGAGGGTTAC-AGCAGTAG
386 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGATC-GGACTGAGGGTTACGAGTAGCAG
* * ** * * *
21224256 GATCCACAGCACACAGGAGGGATC--G--G------G-CTTGCGCATTCTGCCTCTCCGATCGGC
450 GATCGATAGCACGTAGGGGGGATCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGC
* * *
21224310 TGAGTGCCCACACGCTCGTTTCGTGGTTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGCA
515 TGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* * * * * * ** * **
21224375 TACGAGTTCATTCCTAGTCTAAGATCGGATTGGATCGAAGCTGGCGGCAGCAGGATTAGCAGCAG
580 TACGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCAGGACCAGCAGCAG
* * * * * * ** *
21224440 GATCGACGGCACGTTGGGGGGGACCGAGCTGATCCCTGGCTTGCGCATTCTACTTCTCCGACC-A
645 GATCGACAGCACG-TAGGAGGGACTGGGCCGATCCCTGGCTTATGCATTCTACCTCTCCGACCGA
* * * *
21224504 ----GCCGA---G-T----GCCCGCGTGCTCATTTCGTGGGTTGACTTAGGGATACGGAGTTCAT
1 CCTCTCCGATCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
21224557 CCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGATAG
* * * * * *
21224622 TAGGATCGACAGCACGTAGGGGGGATCGGGTCGATCC-CTGGCTTACGCATTCTACCTCT-TCGG
130 CAGGATCGACAGCACGTAAGGGGGATCGAGCCGATCCTC-GGCTTACGCATTCTGCCTCTCT-GA
* * * *
21224685 CCGGCTGAGCGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
193 TCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * * * * * ***
21224750 AAGCCCCAGTCAGACTGAGGATTGTGG-TAGCGGGATCGGCAGCACGTAGAGGGGGACCAAACCG
258 AAGCCCCAGCCAGACCGAGGGTTGTGGCTAGCGGGACCAGCAGCACGCAGAGGAGGACCAGGTCG
** ** * * * * * *
21224814 ATCCCTGGTTTGCGCATTATGCCTCTCCGGTTGGCTCAACGCCCGAATGCTCGTTTTATGGGTGG
323 ATCCC-GACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACGTTCATTTCATGGGTTG
* *
21224879 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGC-AGCAGCAGG
387 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-ATCGGACTGAGGGTTACGAGTAGCAGG
* * ** * ** *
21224943 ATCGATAGCACGTAGAGGGGGACCGGGCC-AGTCCTAGGCTTACGCATTCTGGCTCTCCGGTCGG
451 ATCGATAGCACGTAG-GGGGGATCAGGCCGA-TCCCCGACTTGTGCATTCTGCCTCTCCGGTCGG
* * * * * *
21225007 CTAAGTGTCCACATGTTCGTTTCGTGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCT-AGC
514 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-
* * * * * * * * **
21225071 CATACGGAGTTCATTTCCAGTCTAAGTTCAGGCTGAACTGAAGGTTACAAAAATAGGACCAGCAG
578 CATAC-GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCAGGACCAGCAG
*** * ** * *
21225136 CA-GATCGACAGCATACAGAGAAGGA-TCGGATCGATCCTTGAC-T-TGCA--C-A--T-T----
642 CAGGATCGACAGCACGTAG-GAGGGACT-GGGCCGATCCCTGGCTTATGCATTCTACCTCTCCGA
*
21225187 CTG-
705 CCGA
* * * * *
21225190 CCTCTTCGATCGATTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTAA
1 CCTCTCCGATCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * ** *
21225255 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACAGTTGC-AGCA
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGA-TA
* * * * * * * *
21225319 GCAGGATTGGCAACACGTAAAGGGGATC-AGGCTGAT--TCGTGACTTGCGCATTCTGACTCTCC
129 GCAGGATCGACAGCACGTAAGGGGGATCGA-GCCGATCCTCG-G-CTTACGCATTCTGCCTCTCT
* ** * * * * *
21225381 GACCGGTTGAGCGCCTGCATGCCCGTTTCATGGGTCGGCTTAGGCATAGGGAGTTCATTCCATGT
191 GATCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * *
21225446 CTAAGACCCAGTCAGACCGAGGGTTGTGGCGA-CGGGGCCAGCAGCACGCAGAGGAAGACCAGGT
256 CTAAGCCCCAGCCAGACCGAGGGTTGTGGCTAGCGGGACCAGCAGCACGCAGAGGAGGACCAGGT
** * * * * *
21225510 CGATCCTCGACTTGCATATTATGCCTATCCGGTCGGCTTAGTGCCCGAACGTTCATTTCGTGGGT
321 CGATCC-CGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACGTTCATTTCATGGGT
* *
21225575 TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCTGACCGGACTGAGGGTTACGA-TAGCA
385 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACTGAGGGTTACGAGTAGCA
** * * *
21225639 GGATCGATAGCACACAGGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCTGGTCGA
449 GGATCGATAGCACGTAGGGGGGATCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGG
** * *
21225704 CTGAGCACCCGCACGCTCGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
514 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* *
21225769 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTATC-ACAGTAAGACCAGCAG
579 ATAC-GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTA-CGACAGCAGGACCAGCAG
* *
21225833 TAGGATCGACAGCACGTAGGAGGGACTGGGCCAATCCCTGGCTTATGCATTCTACCTCTCCGACC
642 CAGGATCGACAGCACGTAGGAGGGACTGGGCCGATCCCTGGCTTATGCATTCTACCTCTCCGACC
21225898 GA
707 GA
* * * * * *
21225900 CCTCTCCGATCGGCT-AGCGCCCGCGTACTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCAG
1 CCTCTCCGATCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
21225964 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGGATCGAGGGTTGCGATAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGATAG
* * * * **
21226029 TAGGATCGACAGCACGCAAGGGGGACCGAGCCAATCCTCGGCTTGTGCATTCTGCCTCTCTGATC
130 CAGGATCGACAGCACGTAAGGGGGATCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGATC
* **
21226094 GATTGAGCACCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
195 GACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * ** * * * *
21226159 GCCCCAGTC-GAACCGAGGGTTGTGG-TAGCGGGAGC-GATAAAATGCAGAGAAGGACCGGGCCG
260 GCCCCAGCCAG-ACCGAGGGTTGTGGCTAGCGGGACCAG-CAGCACGCAGAGGAGGACCAGGTCG
* * ** * * * *
21226221 ATCCCTGACTTGCGCATTATGCCTATCCGGCCAGCTCAGCATCCGAATGCTCGTTTCATGGTTTG
323 ATCCC-GACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACGTTCATTTCATGGGTTG
* * * **
21226286 ACTTAGGCATATGGAGTTCATTCCCAATCTAAGATCGGATCAGACTGAGGGTTGTG-GTAGCAGG
387 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACTGAGGGTTACGAGTAGCAGG
* * * * *
21226350 ATCGACAGCACGTAGGGCGGATCAGGCCGATCCCCGACTTATGCATTCTACCTCTCCAGTCGGCT
451 ATCGATAGCACGTAGGGGGGATCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGCT
*
21226415 GAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
516 GAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
* * ** * *
21226480 ACAGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATCGAGGGTTACGGTAGCAAGACCAGCAGTA
581 AC-GAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTACGACAGCAGGACCAGCAGCA
* * * * *
21226544 GGATCGACAGCACGTAAGAGGGGACTGGGCCAATCCCTGGCTTATGCATTCTGCCTCTTCGATCG
644 GGATCGACAGCACGTAGGA-GGGACTGGGCCGATCCCTGGCTTATGCATTCTACCTCTCCGACCG
*
21226609 G
708 A
* * * * *
21226610 CCTCTCCAATCGGTTGAGCGCCC-TACGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCAT
1 CCTCTCCGATCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *** * * *
21226674 CCCCAGTCTATGCATATAAAGTTCATTCCCAGTGTAAGATCAGACCGGATCGATGGTTGCGAGAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGATAG
* ** * ** * *
21226739 CAGGATTGGTAGCACG-AAGGGGGGACCG-GACCGATCCTCGGCTTGTGCATTCTGTCTCTC-CA
130 CAGGATCGACAGCACGTAA-GGGGGATCGAG-CCGATCCTCGGCTTACGCATTCTGCCTCTCTGA
** ** * * *
21226801 TCCGACTGAGTGCCTACACGCCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTC
193 T-CGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * *
21226866 TAAGCCCCAGCCGGACCGAGGGTTGT-GCCAGCGAGACCTGCAGCACGCAGA-GAGGGACCAGGT
257 TAAGCCCCAGCCAGACCGAGGGTTGTGGCTAGCGGGACCAGCAGCACGCAGAGGA-GGACCAGGT
* * * * * * * *
21226929 CGATCCCTAGCTTGTGCGTTATACCTCTCTGGCTGGCTCAGCGCCTGAACGCTT--GTTCTATGG
321 CGATCCCGA-CTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACG-TTCATTTC-ATGG
* * *
21226992 GTTAACTTAGGCATACAGAGTTCATTTCCAGTCTAAGATCGGATCGGACTGAGGGTT--GTAGTA
383 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACTGAGGGTTACG-AGTA
* * * * * * * * * *
21227055 GCAAGATCAATAGCACGTTGGGCTGGACCAGGTCGGTCCCCGGCATGCT-CATTCTGCCTCTTCG
446 GCAGGATCGATAGCACGTAGGG-GGGATCAGGCCGATCCCCGACTTG-TGCATTCTGCCTCTCCG
* * *
21227119 ATCGACTGAGTGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTCA-GT
509 GTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGT
* ** * * * * * *
21227183 CTAAG-AT-CGA-ATCAGACCGAGGGT-TACGGT-AG-CAGGACCAGCTGCAGGAT-CGACAGCA
573 CTAAGCATACGAGTTCATTCCCA--GTCTAAGATCAGACTGGACC-G-AG--GGTTACGACAGCA
* * * * * ** *
21227241 GGACCAGCTGCAGGATCGACAGCATGCATGAGGGA-TCGGGTCGATCCCTGGCTTGCGTATTCTA
632 GGACCAGCAGCAGGATCGACAGCACGTAGGAGGGACT-GGGCCGATCCCTGGCTTATGCATTCTA
* ** *
21227305 CCTTTTTGATCGA
696 CCTCTCCGACCGA
* * * * *
21227318 CCTCTCTGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
1 CCTCTCCGATCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
21227383 CCCCAGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCGGACTGATGGTTGC-AGTC
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGA-TA
** * * * * * * *
21227447 TTAGGATCGACAGCATGTAGGGGGGATCGAACAGATCTTCGGCTTACGTATTCTACCTCTCT-AG
129 GCAGGATCGACAGCACGTAAGGGGGATCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGA-
** * * *
21227511 TCGGTTGAGCACCCGCACACCCATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
193 TCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * * *
21227576 AAGCCCCAGCCAGATCGATGGTTGTGG-TAGCGGGA-CTGACAGCACACAGAGGGGGACC-GAGT
258 AAGCCCCAGCCAGACCGAGGGTTGTGGCTAGCGGGACCAG-CAGCACGCAGAGGAGGACCAG-GT
* * * * * * * * * * *
21227638 CGATCTCTAGCTTGCACATTCTGCCTTTCCGGCAGGCTAAGCACTCGCACGCTCATTTCATGGGT
321 CGATCCCGA-CTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACGTTCATTTCATGGGT
* *
21227703 TGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAG
385 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
21227738 CATATGGAGT
Statistics
Matches: 2627, Mismatches: 492, Indels: 220
0.79 0.15 0.07
Matches are distributed among these distances:
685 1 0.00
686 293 0.11
687 99 0.04
689 1 0.00
690 4 0.00
691 2 0.00
692 1 0.00
693 1 0.00
694 2 0.00
695 2 0.00
696 4 0.00
697 165 0.06
698 485 0.18
699 51 0.02
701 1 0.00
702 1 0.00
704 1 0.00
705 1 0.00
706 4 0.00
707 9 0.00
708 78 0.03
709 884 0.34
710 430 0.16
711 104 0.04
712 3 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (708 bp):
CCTCTCCGATCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGATAGC
AGGATCGACAGCACGTAAGGGGGATCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGATCG
ACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
CCCCAGCCAGACCGAGGGTTGTGGCTAGCGGGACCAGCAGCACGCAGAGGAGGACCAGGTCGATC
CCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACGTTCATTTCATGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGATCGGACTGAGGGTTACGAGTAGCAGGATCGA
TAGCACGTAGGGGGGATCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAG
TTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGA
CAGCACGTAGGAGGGACTGGGCCGATCCCTGGCTTATGCATTCTACCTCTCCGACCGA
Found at i:21226486 original size:26 final size:26
Alignment explanation
Indices: 21226450--21226502 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21226440 GTTGGCTTAG
*
21226450 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21226476 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21226502 G
1 G
21226503 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21227231 original size:12 final size:12
Alignment explanation
Indices: 21227214--21227255 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
21227204 GGTTACGGTA
21227214 GCAGGACCAGCT
1 GCAGGACCAGCT
* *
21227226 GCAGGATC-GACA
1 GCAGGACCAG-CT
21227238 GCAGGACCAGCT
1 GCAGGACCAGCT
21227250 GCAGGA
1 GCAGGA
21227256 TCGACAGCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.29, C:0.29, G:0.36, T:0.07
Consensus pattern (12 bp):
GCAGGACCAGCT
Found at i:21227240 original size:24 final size:24
Alignment explanation
Indices: 21227213--21227264 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
21227203 GGGTTACGGT
21227213 AGCAGGACCAGCTGCAGGATCGAC
1 AGCAGGACCAGCTGCAGGATCGAC
21227237 AGCAGGACCAGCTGCAGGATCGAC
1 AGCAGGACCAGCTGCAGGATCGAC
21227261 AGCA
1 AGCA
21227265 TGCATGAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.31, C:0.29, G:0.33, T:0.08
Consensus pattern (24 bp):
AGCAGGACCAGCTGCAGGATCGAC
Found at i:21227741 original size:26 final size:26
Alignment explanation
Indices: 21227711--21227763 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21227701 GTTGGCTTAG
21227711 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
21227737 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21227763 G
1 G
21227764 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21228646 original size:26 final size:26
Alignment explanation
Indices: 21228608--21228660 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21228598 GGCTCAAACT
*
21228608 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
21228634 CTTAGACTTGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21228660 C
1 C
21228661 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21229001 original size:26 final size:26
Alignment explanation
Indices: 21228950--21229002 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21228940 CTGATCAGAT
*
21228950 CTTAGACTGGGAATGAAATGCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* *
21228976 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAAATCCATATG
21229002 C
1 C
21229003 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:21229100 original size:184 final size:182
Alignment explanation
Indices: 21228791--21229343 Score: 610
Period size: 184 Copynumber: 3.0 Consensus size: 182
21228781 TCCGACTGGG
* * * * *
21228791 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAG
* * * * * *
21228856 CCGACTGGAGAGGTAGAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGAC-CGAGAGGTAGAATGCGTAAGTCGAGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
* *
21228921 TATTGTCGCAACCCTCGATCTGATCAGATCTTAGACTGGGAATGAAATGCATAT
130 TACTGTCGCAACCCTCGATCTGATC-GATCTTAGACTGGGAATGAAATCCATAT
* * * *
21228975 GCTTAGAC-TGAGGATGAACTCCGTATGCCTAAGTCAATCCACAAAATGAGCGTACGGGTGCTCA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCA
* * * *
21229039 GTCGGCCAGAGAGGTAGAATGCATAAGTCGAGGATCAGCCCGTTCCCCCCTGCGTGCTGTCGATC
65 GCCGACC-GAGAGGTAGAATGCGTAAGTCGAGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATC
* * *
21229104 CTACTGTCGCAACCCTC-ACTCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
129 CTACTGTCGCAACCCTCGA-TCTGAT-CGATCTTAGACTGGGAATGAAATCCATAT
* * * * * *
21229159 TCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACCAAACGAACGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAG
* * ** ** * *
21229224 CCGACCGAAAAGGCAGAATGCGTAAGTC-AGGGA-CTAGCCCGATCCTTCCAACCTGCTGTCAAT
66 CCGACCG-AGAGGTAGAATGCGTAAGTCGA-GGATC-AGCCCGATCCCCCCTGCGTGCTGTCGAT
* * * *
21229287 CCTGCTATCGCAACCCTCGATCTGACTCGATCTTAGACTGGGAATGAACTCCGTAT
128 CCTACTGTCGCAACCCTCGATCTGA-TCGATCTTAGACTGGGAATGAAATCCATAT
21229343 G
1 G
21229344 ATTAAGTCAA
Statistics
Matches: 308, Mismatches: 51, Indels: 20
0.81 0.13 0.05
Matches are distributed among these distances:
183 6 0.02
184 297 0.96
185 5 0.02
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAG
CCGACCGAGAGGTAGAATGCGTAAGTCGAGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCT
ACTGTCGCAACCCTCGATCTGATCGATCTTAGACTGGGAATGAAATCCATAT
Found at i:21229661 original size:158 final size:159
Alignment explanation
Indices: 21229159--21229661 Score: 412
Period size: 158 Copynumber: 3.2 Consensus size: 159
21229149 AACTCCATAT
* * * *
21229159 TCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCACCAAACGAACGTGCGGGTGCTCA
1 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * ** *
21229223 ACCGACCGAAAAGGCAGAATGCGTAAGTC-AGGGA-CTAGCCC-GAT-CCTTCCAACCTGCTGTC
65 GCCGGCTGGAGAGGCAGAATGCATAAGCCGA-GGATCGA-CCCAG-TCCCTCCCTGCATGCTGTC
* * * * *
21229284 AATCCTGCTATCGCAACCCTCGATCTGACTCGA
127 GATCCTGCTGTCGCAACCCTCGGTCCGGCTCGA
** * * * * *
21229317 TCTTAGACTGGGAATGAACTCCGTATGATTAAGTCAACCCACGAAACGAGTGTTCGGGTGCTGAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
21229382 CCGGCTGGAGAGGCATAATGCGTAAGTCGAGGATCGACCCGGTCCCTCTCTGCATGCTG-CTGGT
66 CCGGCTGGAGAGGCAGAATGCATAAGCCGAGGATCGACCCAGTCCCTCCCTGCATGCTGTC-GAT
* * * * *
21229446 CCTGCTGTCACAACCCTCAGTCTGGCTGGG
130 CCTGCTGTCGCAACCCTCGGTCCGGCTCGA
* ** * * *
21229476 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAAGCCACGAAACGGGCGTGCGGGCGCTCAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** **
21229541 TCGG-TCGGAGAGGCAGAATTCATAAGCCGAGGATCGGTCCAGTCCC-CCCTGTGTGCTGTCGAT
66 CCGGCT-GGAGAGGCAGAATGCATAAGCCGAGGATCGACCCAGTCCCTCCCTGCATGCTGTCGAT
*
21229604 CCTGCTGTCGTAACCCTCGGTCCGG-TCTGA
130 CCTGCTGTCGCAACCCTCGGTCCGGCTC-GA
21229634 TCTTAGACTGGGAATGAACTCCGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
21229662 TTAGGCTGGG
Statistics
Matches: 271, Mismatches: 65, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 142 0.52
159 127 0.47
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCTGGAGAGGCAGAATGCATAAGCCGAGGATCGACCCAGTCCCTCCCTGCATGCTGTCGATC
CTGCTGTCGCAACCCTCGGTCCGGCTCGA
Found at i:21229664 original size:26 final size:26
Alignment explanation
Indices: 21229635--21229687 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21229625 CCGGTCTGAT
*
21229635 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
21229661 CTTAGGCTGGGGATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21229687 C
1 C
21229688 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21230395 original size:26 final size:26
Alignment explanation
Indices: 21230357--21230409 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21230347 GGCTCAAACT
21230357 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21230383 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21230409 C
1 C
21230410 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21230646 original size:26 final size:26
Alignment explanation
Indices: 21230610--21230662 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21230600 CTGATCTGAT
21230610 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21230636 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21230662 C
1 C
21230663 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21230778 original size:185 final size:185
Alignment explanation
Indices: 21230457--21231006 Score: 536
Period size: 185 Copynumber: 3.0 Consensus size: 185
21230447 CATTCGGAGG
* * * * * * * *
21230457 CATGGAACGAACTCCCTATGCCTAAGGTAACCCACAAAACGGGCGTGCGAGTGCTCAGACTG-TC
1 CATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAATGAGCATGCGAGTGCTCA-ACCGACC
* * * * * ** * *
21230521 GAAAAAGGCAGAATGCGCAAGCTGGGGATCGGCCCGAT-CCCTCCTGCGTGCTGCCGATCCTGCT
65 G-GAGAGGCAAAATACACAAGCCAGGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATCCTGCT
* * * *
21230585 GTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
129 GCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * * *
21230642 C-TGGGGATGAACTCCGTATGCCTAAG-TCAACCTACAAAATGAGCGTGCGAGTGCTCAATCGAC
1 CAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACAAAATGAGCATGCGAGTGCTCAACCGAC
* * * * * * *
21230705 CGGAGAGGTAGAATACGCAAGTC-GAGGATCGGCCCGGTCCCCCCCTGCGTGCTACCAATCCCGC
64 CGGAGAGGCAAAATACACAAGCCAG-GGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATCCTGC
* *
21230769 TGCCGCAACCC-CAGGTCCGGTCCGATCCTAGACTGGGAATGAACTCTGTATGCTTAGA
128 TGCCGCAACCCTC-GGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* ** * * **
21230827 CATGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAATGAGCATGCGGGTGCTCAGCCGGTCG
1 CATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAATGAGCATGCGAGTGCTCAACCGACCG
* * * * * * ** *
21230892 GAGAGGCAAAATGCACAAGCCAGGGACCGACCCTGTCCCCGCCTACGTGCTGTTGATCCTACTGC
66 GAGAGGCAAAATACACAAGCCAGGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATCCTGCTGC
* *
21230957 CGCAACCCTTGGTCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATGC
131 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
21231007 CTAAGTCAAC
Statistics
Matches: 298, Mismatches: 57, Indels: 20
0.79 0.15 0.05
Matches are distributed among these distances:
183 1 0.00
184 32 0.11
185 262 0.88
186 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
CATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAATGAGCATGCGAGTGCTCAACCGACCG
GAGAGGCAAAATACACAAGCCAGGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATCCTGCTGC
CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
Found at i:21231300 original size:158 final size:154
Alignment explanation
Indices: 21230821--21231322 Score: 484
Period size: 158 Copynumber: 3.2 Consensus size: 154
21230811 ACTCTGTATG
21230821 CTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAATGAGCATGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAATGAGCATGCGGGTGCTCAGC
* * * * *
21230886 CGGTCGGAGAGGCAAAATGCACAAGCCAGGGACCGACCCTGTCCCCGCCTACGTGCTGTTGATCC
65 C-GTCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCC-GTCCCC-CCTGCGTGCTGTCGATCC
* *** * *
21230951 TACTGCCGCAACCCTTGGTCCGGTCTAAT
127 TGCTGCCGCAACCCTCAATCCGAT-TGAT
* * * * *
21230980 CTTAGACTGGGAATGAACTCTGTATGCCTAAG-TCAACCCACGAAACGAGCGTTCGGGTGCTAAG
1 CTTAGACT-GGAATGAACTCTGTATGCCTAAGCT-AACCCATGAAATGAGCATGCGGGTGCTCAG
* * ** * * * *
21231044 CCGATCGAAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGGTCCCCTCTGCGTGTTGTCGGTCC
64 CCG-TCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCC-GTCCCCCCTGCGTGCTGTCGATCC
* * * **
21231109 TGCTGCCACAACCCTCAATCTGACTGGGG
127 TGCTGCCGCAACCCTCAATCCGA-TTGAT
** *
21231138 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAGCCCATGAAATGAGCATGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAATGAGCATGCGGGTGCTCAGC
** * * *
21231203 CAGTCGGAGAGATAGAATGCACAAGCCGGGGATCGGTCCGATCCCCCCTGCGTGCTGCCGATCCT
65 C-GTCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCG-TCCCCCCTGCGTGCTGTCGATCCT
** *
21231268 GCTATCGTAACCCTCAATCCGATATGAT
128 GCTGCCGCAACCCTCAATCCGAT-TGAT
* *
21231296 CTTAGACTGGTAGTGAACTCTATATGC
1 CTTAGACTGG-AATGAACTCTGTATGC
21231323 TTAGACTAGG
Statistics
Matches: 272, Mismatches: 61, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 172 0.63
159 95 0.35
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (154 bp):
CTTAGACTGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAATGAGCATGCGGGTGCTCAGCC
GTCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGTCCCCCCTGCGTGCTGTCGATCCTGCT
GCCGCAACCCTCAATCCGATTGAT
Found at i:21231347 original size:26 final size:26
Alignment explanation
Indices: 21231296--21231348 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21231286 CCGATATGAT
* *
21231296 CTTAGACTGGTAGTGAACTCTATATG
1 CTTAGACTGGGAGTGAACTCCATATG
*
21231322 CTTAGACTAGGGA-TGAACTCCGTATG
1 CTTAGACT-GGGAGTGAACTCCATATG
21231348 C
1 C
21231349 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAGTGAACTCCATATG
Found at i:21232212 original size:26 final size:26
Alignment explanation
Indices: 21232176--21232228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21232166 CTGGTCCAAT
*
21232176 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21232202 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21232228 C
1 C
21232229 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21232556 original size:26 final size:26
Alignment explanation
Indices: 21232520--21232572 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21232510 CCAGTCTGAT
21232520 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21232546 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21232572 C
1 C
21232573 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21232939 original size:26 final size:25
Alignment explanation
Indices: 21232891--21232940 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
21232881 GATCTGATCA
*
21232891 TAGACTGGAATGAACTCCGTATGCT
1 TAGACTGGAATGAACTCCATATGCT
*
21232916 TAGACATGGAATGAACTTCATATGC
1 TAGAC-TGGAATGAACTCCATATGC
21232941 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (25 bp):
TAGACTGGAATGAACTCCATATGCT
Found at i:21235399 original size:26 final size:26
Alignment explanation
Indices: 21235360--21235411 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21235350 GGCTCAAAAT
21235360 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
21235386 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
21235412 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:21237458 original size:158 final size:156
Alignment explanation
Indices: 21236865--21237723 Score: 757
Period size: 158 Copynumber: 5.4 Consensus size: 156
21236855 AGTCTTACTG
*
21236865 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAG
1 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAG
* * * * * * * * * *
21236930 GAAACGGGCGTGCGGGGGTGCTCAGCCGGTCGAAGAGGCAGAATGAGTAAGCCGGAGACCGACTC
66 GAAATGAGCGT--GTGGGCGCTCAACCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGAC-C
* *
21236995 CGGTCCTCCC-TGCATGCTGTCGATCCTACTA
128 C-GTCC-CCCTTGCATGCTGCCGGTCC-ACTA
* *** * * * *
21237026 CCGCAACCCTCGGTCTGGTCT-AATCTTAGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCA
1 CCACAACCCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCC
* * * ** * * * *
21237089 ACGAAATGAGCGTGTGGGCACT-AAGCCAGCCAAAGAGGCATAATGCGTAAGCCGGGGATTGGCT
64 AGGAAATGAGCGTGTGGGCGCTCAA-CCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACC
* * * * *
21237153 CGATCCCCCTCTACGTGCTGGCGGTCCCGCTG
128 CG-TCCCCCT-TGCATGCTGCCGGT-CCACTA
* * *
21237185 CCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCAT
1 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAG
* * * * * ** *
21237250 GAAA-CAGGGAATGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCC
66 GAAATGAGCG--TGTGGGCGCTCAACCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCC
21237314 AGTCCCCCTTTGCATGCTGCCGGTCTCACTA
129 -GTCCCCC-TTGCATGCTGCCGGTC-CACTA
* * *
21237345 CCACAACCCTCGATCCGACTGGGGCTT-GACATGGAATGAACTCCCTATGCCTAAGCCAACCCAG
1 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAG
* * *
21237409 GAAATGAGTGTGTGGGCGCTCAACCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGA
66 GAAATGAGCGTGTGGGCGCTCAACCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCG-
* * * *
21237474 TCCTCCC-TGCCTGCTGTCGATCCTGCTA
130 TCC-CCCTTGCATGCTGCCGGTCC-ACTA
** * * ** ** *
21237502 CTGCAACCCTCGGTCTGGTTCGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCA
1 CCACAACCCTCGGTCTGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * ** * *
21237566 TGAAATGAGCGT-TCGGGCACTGAGTCAGTCGGAGAGGCATAATGCGTAAGTCGGGGATCGACCC
65 GGAAATGAGCGTGT-GGGCGCTCAACCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCC
*
21237630 AGTCCCCCTCTGCATGCTG-CGGTACCGCTA
129 -GTCCCCCT-TGCATGCTGCCGGT-CCACTA
*
21237660 CCATAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
21237724 CAAAACAGGT
Statistics
Matches: 557, Mismatches: 114, Indels: 57
0.77 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 43 0.08
158 205 0.37
159 155 0.28
160 88 0.16
161 63 0.11
162 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAG
GAAATGAGCGTGTGGGCGCTCAACCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGT
CCCCCTTGCATGCTGCCGGTCCACTA
Found at i:21237694 original size:316 final size:316
Alignment explanation
Indices: 21237279--21237861 Score: 778
Period size: 316 Copynumber: 1.8 Consensus size: 316
21237269 CTCAACCGGC
*
21237279 CGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCTTTGCATGCTGCCGGTCTCACT
1 CGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTGCATGCTGCCGGTCTCACT
*
21237344 ACCACAACCCTCGATCCGACTGGGGCTTGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAG
66 ACCACAACCCTCGATCCGACTGGGGCTTGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
21237409 GAAA-TGAGTGTGTGGGCGCTCAACC-AGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCC
131 AAAACAG-GTGTGCGGGCGCTCAACCGACT-GGAGAGGCAAAATGCGCAAGCCGGGGACCGACCC
* * * * * *
21237472 GATCCTCCCTGCCTGCTGTCGATCCTGCTACTGCAACCCTCGGTCTGGTTCGATCTTAGACTGGG
194 GATCCCCCCTACCTGCTATCGATCCTGCTACAGCAACCCTCGATCCGGTTCGATCTTAGACTGGG
21237537 AATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAGTCAGT
259 AATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAGTCAGT
* ** * * *
21237595 CGGAGAGGCATAATGCGTAAGTCGGGGATCGACCCAGTCCCCCTCTGCATGCTG-CGGTAC-CGC
1 CGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTGCATGCTGCCGGT-CTCAC
* * * *
21237658 TACCATAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
65 TACCACAACCCTCGATCCGACTGGGGCTT-GACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* ** * * * **
21237723 ACAAAACAGGTGTGCGGGTGCTCAGTCGACTGGATAGGCAAAATGTGCAAGCCGGGGATCGGTCC
129 ACAAAACAGGTGTGCGGGCGCTCAACCGACTGGAGAGGCAAAATGCGCAAGCCGGGGACCGACCC
* * * * *
21237788 GGTCCCCCCTACGTGCTATCGATCCTGCTACAGCAACCTTTGATCCGGTTTGATCTTAGACTGGG
194 GATCCCCCCTACCTGCTATCGATCCTGCTACAGCAACCCTCGATCCGGTTCGATCTTAGACTGGG
21237853 AATGAACTC
259 AATGAACTC
21237862 CATATGCTTA
Statistics
Matches: 227, Mismatches: 36, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
315 31 0.14
316 193 0.85
317 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
CGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTGCATGCTGCCGGTCTCACT
ACCACAACCCTCGATCCGACTGGGGCTTGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
AAAACAGGTGTGCGGGCGCTCAACCGACTGGAGAGGCAAAATGCGCAAGCCGGGGACCGACCCGA
TCCCCCCTACCTGCTATCGATCCTGCTACAGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAA
TGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAGTCAGT
Found at i:21237883 original size:26 final size:26
Alignment explanation
Indices: 21237842--21237894 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21237832 CCGGTTTGAT
21237842 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21237868 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
21237894 C
1 C
21237895 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21238949 original size:26 final size:26
Alignment explanation
Indices: 21238908--21238960 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21238898 CCGGTCCAAT
*
21238908 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
21238934 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21238960 C
1 C
21238961 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21239523 original size:160 final size:158
Alignment explanation
Indices: 21239145--21239574 Score: 441
Period size: 160 Copynumber: 2.7 Consensus size: 158
21239135 CTCCATATGG
* * *
21239145 TTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACTAGTGTCCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTCCGGGCGCTCAGTC
* * * * * * *
21239210 GGTCAGAGACGTAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCGATCCT
66 GGTCAGAGAGGCAGAATGCGCAAG-CCGGGATCGGCCCGATCCCCCCCTGCATGCTGTCGATCCC
* ** *
21239275 GCTACGGCAACCCTCAATGCGGTCTGATC
130 ACTACCACAACCCTCAATGCGGTCTGAGC
* * * * ** * *
21239304 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACTCGCGAAACGAGCGTTTGGGCGCTAAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTCCGGGCGCTCAGT
* * * * *
21239368 CAGCCAGAGAGGGCATAATGCGCAAGCCAGGGATCGGCCCGATCGCCCTCTGCATGCTGTCGATC
65 CGGTCAGAGA-GGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCCCTGCATGCTGTCGATC
* ** ** *
21239433 CCACTGCCACAACCCTCGGTTTGG-CTGGGGC
128 CCACTACCACAACCCTCAATGCGGTCT-GAGC
* * *
21239464 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTCCGGGCGCTCAGTC
* * *
21239529 GGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCC
66 GGTCAGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCCC
21239575 ATGCGTGCTG
Statistics
Matches: 215, Mismatches: 50, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
158 2 0.01
159 93 0.43
160 119 0.55
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTCCGGGCGCTCAGTC
GGTCAGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCCCTGCATGCTGTCGATCCCA
CTACCACAACCCTCAATGCGGTCTGAGC
Found at i:21239650 original size:26 final size:26
Alignment explanation
Indices: 21239621--21239673 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21239611 CTGGTCTGAT
*
21239621 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
21239647 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
21239673 C
1 C
21239674 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:21239916 original size:13 final size:12
Alignment explanation
Indices: 21239890--21239923 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
21239880 TTTTTCATGA
21239890 TTTTTGAAACTT
1 TTTTTGAAACTT
21239902 TTTTTGAAACTT
1 TTTTTGAAACTT
21239914 TTTTTAGAAA
1 TTTTT-GAAA
21239924 GCGTTTTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.56
Consensus pattern (12 bp):
TTTTTGAAACTT
Found at i:21240368 original size:26 final size:26
Alignment explanation
Indices: 21240330--21240382 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21240320 GGCTCAAACT
21240330 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21240356 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21240382 C
1 C
21240383 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21240647 original size:158 final size:158
Alignment explanation
Indices: 21240355--21240658 Score: 351
Period size: 158 Copynumber: 1.9 Consensus size: 158
21240345 AACTCCATAT
* * * * *
21240355 GCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
** * * * * * * *
21240420 CCGGTCGGAGCGACAGATTGTGCAAGCTGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCGGTCA
66 CCAATCGGAGAGACAGAATGCGCAAGCCGGGATCAGCCCGATCCCCCTCAGCATGCTGTCGATCA
21240485 TGCTGCCACAACCCTCGGTCTGACTGGG
131 TGCTGCCACAACCCTCGGTCTGACTGGG
* *
21240513 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * ** * * *
21240578 TCAATTGGAGAGGTAGAATGCGTAAGCCGAGGATC-GACCTGATCCCCC-CAGCGTGCTGTCGAT
66 CCAATCGGAGAGACAGAATGCGCAAGCCG-GGATCAG-CCCGATCCCCCTCAGCATGCTGTCGAT
* *
21240641 CCTGCTGCCGCAACCCTC
129 CATGCTGCCACAACCCTC
21240659 AGTCCTGTCC
Statistics
Matches: 119, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 105 0.88
159 14 0.12
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CCAATCGGAGAGACAGAATGCGCAAGCCGGGATCAGCCCGATCCCCCTCAGCATGCTGTCGATCA
TGCTGCCACAACCCTCGGTCTGACTGGG
Found at i:21241655 original size:26 final size:26
Alignment explanation
Indices: 21241626--21241678 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21241616 CCGGTCTGAT
*
21241626 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
21241652 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21241678 C
1 C
21241679 CTACGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21242178 original size:26 final size:26
Alignment explanation
Indices: 21242127--21242179 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21242117 CTAGTCTGAT
* *
21242127 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21242153 CTTAGACCTGGG-ATGAACTCCATATG
1 CTTAGA-CTGGGAATGAACTCCATATG
21242179 C
1 C
21242180 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21242220 original size:775 final size:758
Alignment explanation
Indices: 21240798--21242268 Score: 1868
Period size: 775 Copynumber: 1.9 Consensus size: 758
21240788 TCGAGAATTA
* * *
21240798 GCCCTGTCCCACCTGGGTGCTGCCGATCCTGCTACAGGTCCTGCTGCCTCAACCCTCAGTCCAGT
1 GCCCGGTCCCACCTGGGTGCTGCCGATCCTGCTACAGGTCCTACTGCCACAACCCTCAGTCCAGT
21240863 CTGATCGTAGACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCATATGCCTAAGCC
66 CTGATCGTAGACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCATATGCCTAAGCC
* * ** * * *
21240928 AACCCACTAAATGAGTGTGCGAGCGCTTAGTCGGTTGGAAAGGCAGAATGCGCAAGCCAGGGATA
131 AACCCACTAAACGAGTGTGCGAGCGCTGAGTCGGTCAGAAAGGAAGAATGCACAAGCCAGGGACA
* *** * * * * * *
21240993 GGCCCGATCCCCCTTGCGTGCTATCGATCCTGGTATCGCAACCCTTGATCTGGTCTGATCTTAGA
196 GGCCCGATCCCCCATGCAAACTATCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGA
* * **
21241058 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTGGGCACTGAGCCGACTG
261 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGAGCACTGAGCCGACCA
* * * *
21241123 GAAAGGCATAATGCTCGATCCCCCTCTGTGTGCTGCCGGTCCCACTGCCATAACCCTCGGTCCGG
326 GAAAGGCATAATGCTCGATCCCCCTCTGCGTGCTACCGGTCCCACTGCCACAACCCTCGGTCCAG
* **
21241188 CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACGCACGAAATAGGCATGCGGGTG
391 CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCATGCGGGCA
* * *
21241253 CTCAGCCGACTGGAGAGGTAAAATGCAGAAGTCGGGGATCGGCCTATTCCCCCCTGCGTGCTATC
456 CTCAGCCGACTGGAAAGGTAAAATGCAGAAGTCGGGGATCGGCCCAATCCCCCCTGCGTGCTATC
* * *
21241318 GATCCTGCTGCCGCAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
521 GATCCTGCTGCCGCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* **
21241383 ACTAGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGAATACGAGCGCTCATCCGATC
586 ACTAGAGATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGAATACGAGCGCTCATCCGATC
* * * *
21241448 GAAGAGGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCACAAAACGAGCGTACGAG
651 AAAAAGGCCAACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCACAAAACGAGCGTACGAG
21241513 CGCTCAGTCGACCGGAGAGGTAAAATGCGTAAGTCGGGGATCG
716 CGCTCAGTCGACCGGAGAGGTAAAATGCGTAAGTCGGGGATCG
* * * * * * * *
21241556 GCCCGGTCCCCCCTGGGTGCTGTCGATCTTGTTGCTGGTCCTACTGCCACAACCCTCGGTCCGGT
1 GCCCGGTCCCACCTGGGTGCTGCCGATCCTGCTACAGGTCCTACTGCCACAACCCTCAGTCCAGT
* ** * * *
21241621 CTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTACGCC
66 CTGATCGTAGACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCATATGCCTAAGCC
* * * * *
21241686 AACCCA-TGAAACGAGTGTGCGGGTGCTGAGTCGGTCAGAGAGGAAGAATGCATAAGCCGGGGAC
131 AACCCACT-AAACGAGTGTGCGAGCGCTGAGTCGGTCAGAAAGGAAGAATGCACAAGCCAGGGA-
*
21241750 CA-GCCCGGTCCCCCATGCAAACTATCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTA
194 CAGGCCCGATCCCCCATGCAAACTATCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTA
* * *
21241814 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCGA-TGAGCCGA
259 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGAGC-ACTGAGCCGA
* *
21241878 CCAGAGAGGCATAATACACAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGTCCCAC
323 CCAGAAAGGCATAAT------G-C-----T-----CGATCCCCCTCTGCGTGCTACCGGTCCCAC
** *
21241943 TGCCACAGTCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
371 TGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* *
21242008 AC-AAA-ACGAGCGTGCGGGCACTCAGCCGA-TCGGAAAGGTAGAATGTGCA-AA-TCGGGGATC
436 ACGAAATA-G-GCATGCGGGCACTCAGCCGACT-GGAAAGGTA-AA-ATGCAGAAGTCGGGGATC
* * *
21242068 GGCCCAATCCCCCCTGCGTGCTA-CTGATCC-GACTGTCGTAACCCTCAATCTAGTCTGATCTTA
496 GGCCCAATCCCCCCTGCGTGCTATC-GATCCTG-CTGCCGCAACCCTCAATCCAGTCTGATCTTA
* *
21242131 GACTGGGAATGAACTTCGTATGCTTAGACCT-GGGATGAACTCCATATGCCTAAGTCAACCCACA
559 GACTGGGAATGAACTCCGTATGCTTAGA-CTAGAGATGAACTCCATATGCCTAAGTCAACCCACA
* *
21242195 AAATGAGAATGC-AGGCGCTCATCCGATCAAAAAGGCCAATCGGAGAGGCAGAATGCGCAAGCCA
623 AAATGAGAATACGA-GCGCTCATCCGATCAAAAAGGCCAACCGGAGAGGCAGAATGCGCAAGCCA
21242259 AGGATCGACC
687 AGGATCGACC
21242269 TAGTCCCTCC
Statistics
Matches: 603, Mismatches: 81, Indels: 41
0.83 0.11 0.06
Matches are distributed among these distances:
757 1 0.00
758 283 0.47
759 2 0.00
764 1 0.00
765 1 0.00
770 1 0.00
773 1 0.00
774 8 0.01
775 295 0.49
776 6 0.01
777 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (758 bp):
GCCCGGTCCCACCTGGGTGCTGCCGATCCTGCTACAGGTCCTACTGCCACAACCCTCAGTCCAGT
CTGATCGTAGACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCATATGCCTAAGCC
AACCCACTAAACGAGTGTGCGAGCGCTGAGTCGGTCAGAAAGGAAGAATGCACAAGCCAGGGACA
GGCCCGATCCCCCATGCAAACTATCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGA
CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGAGCACTGAGCCGACCA
GAAAGGCATAATGCTCGATCCCCCTCTGCGTGCTACCGGTCCCACTGCCACAACCCTCGGTCCAG
CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCATGCGGGCA
CTCAGCCGACTGGAAAGGTAAAATGCAGAAGTCGGGGATCGGCCCAATCCCCCCTGCGTGCTATC
GATCCTGCTGCCGCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
ACTAGAGATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGAATACGAGCGCTCATCCGATC
AAAAAGGCCAACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCACAAAACGAGCGTACGAG
CGCTCAGTCGACCGGAGAGGTAAAATGCGTAAGTCGGGGATCG
Found at i:21242366 original size:26 final size:26
Alignment explanation
Indices: 21242337--21242389 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21242327 CTGGTCCGAT
*
21242337 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21242363 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21242389 C
1 C
21242390 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21243305 original size:158 final size:160
Alignment explanation
Indices: 21242920--21243333 Score: 450
Period size: 159 Copynumber: 2.6 Consensus size: 160
21242910 TGCGCACACC
* *
21242920 CCCCGG-TTAACGCATTCTGCCTCTTC-GGTCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
1 CCCCGGCTT-ACGCATTCTGCCTCTTCTGGTCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTG
* * * *
21242983 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTAGACCGAGGGTTGTGGCAGCAGGA
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGCGGCAACAGGA
** * *
21243048 TTGGTAGCACATAGAGGGGGATCAAGCCAAT
130 TTGACAGCACACAGAGGGGGACCAAGCCAAT
* * * * *
21243079 CCCCGGCTTGCGCATTATGCCTCTT-TGG-CTGGCTCAGCGCCCGA-ATGCTCGTTTCATGGGTT
1 CCCCGGCTTACGCATTCTGCCTCTTCTGGTC-GGCTGAGCGCCC-ACACGCTCGTTTCGTGGGTT
** ** * *
21243141 AACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACCGAGGGTTGCGGCAACA
64 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGCGGCAACA
** ** * *
21243204 GGATTGACAGCATGCA-AGGGGGACCGGGTCGAT
127 GGATTGACAGCACACAGAGGGGGACCAAGCCAAT
* *
21243237 CCCCGGCTTACGCATTCTGCCT-TTCTGGTCAGCTGAGCACCCACACGCTCGTTTCGTGGGTTGG
1 CCCCGGCTTACGCATTCTGCCTCTTCTGGTCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGG
*
21243301 CTTAGGCATACGGAGTTTATTCCATGTCTAAGC
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21243334 ATACGGAGTT
Statistics
Matches: 207, Mismatches: 37, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
157 6 0.03
158 90 0.43
159 106 0.51
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (160 bp):
CCCCGGCTTACGCATTCTGCCTCTTCTGGTCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGCGGCAACAGGAT
TGACAGCACACAGAGGGGGACCAAGCCAAT
Found at i:21243335 original size:26 final size:26
Alignment explanation
Indices: 21243306--21243358 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21243296 GTTGGCTTAG
*
21243306 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21243332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21243358 G
1 G
21243359 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21243574 original size:196 final size:196
Alignment explanation
Indices: 21243209--21243713 Score: 475
Period size: 196 Copynumber: 2.6 Consensus size: 196
21243199 CAACAGGATT
* * * * **
21243209 GACAGCATGCAAGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTTTCTGGTCAGCTGAG
1 GACAGCACGCAAGGGGGACCGGATCAATCCCCGACTTACGCATTCTGCCTTTCTGACCAGCTGAG
* * * * *
21243274 CACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACG
66 CACCCACAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCATGTCTAAGCATACA
21243339 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGACCAGCATCAAGAT
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGACCAGCATCAAGAT
21243404 C
196 C
* * * *
21243405 GACAGCACGCAGGGGGGACCGGATCAATCCCCGACTTACGTATTTTGCCTCTTC-GACCGGCTGA
1 GACAGCACGCAAGGGGGACCGGATCAATCCCCGACTTACGCATTCTGCCT-TTCTGACCAGCTGA
* ** * * *
21243469 GCGCCCGTAAGCTCGTTTCATGGGTTGACTTCGGTATATGGAGTTTATCCCCA-GTCTAAGCATA
65 GCACCCACAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTAT-CCCATGTCTAAGCATA
* ** ** *
21243533 CAGAGTTTATTCCCAGTCTAAGATCAGATTAGATTGAGGG-T-T-GC-----GA-CAG---CAGG
129 CAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGACCAGCATCAAG
21243586 ATC
194 ATC
* * * * * * * * *
21243589 GACAGCACGTAAGGGGGACCGGACCGATCCCAGACCTACACATTCTGCCTCTCCGACCGGCTGAG
1 GACAGCACGCAAGGGGGACCGGATCAATCCCCGACTTACGCATTCTGCCTTTCTGACCAGCTGAG
* * * * * * *
21243654 CGCCTGCAC-A-CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 CACC--CACAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCATGTCTAAGC
21243714 CCCAGTCCAA
Statistics
Matches: 256, Mismatches: 47, Indels: 24
0.78 0.14 0.07
Matches are distributed among these distances:
183 5 0.02
184 100 0.39
185 1 0.00
186 1 0.00
187 3 0.01
188 2 0.01
193 2 0.01
194 1 0.00
195 1 0.00
196 134 0.52
197 6 0.02
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (196 bp):
GACAGCACGCAAGGGGGACCGGATCAATCCCCGACTTACGCATTCTGCCTTTCTGACCAGCTGAG
CACCCACAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCATGTCTAAGCATACA
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGACCAGCATCAAGAT
C
Found at i:21243712 original size:184 final size:183
Alignment explanation
Indices: 21243148--21243713 Score: 571
Period size: 184 Copynumber: 3.0 Consensus size: 183
21243138 GTTAACTTAG
* * * * *
21243148 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAACAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * ** * *
21243213 GCATGCAAGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTTTCTGGTCAGCTGAGCACC
66 GCACGCAAGGGGGACCGGATCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
*
21243278 -CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
131 GCACAC-C-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
*
21243332 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGG-T-T-GC-----GA-CAG--
* * * * * *
21243397 TCAAGATCGACAGCACGCAGGGGGGACCGGATCAATCCCCGACTTACGTATTTTGCCTCTTCGAC
55 -CAGGATCGACAGCACGCAAGGGGGACCGGATCGATCCCCGACTTACGCATTCTGCCTCTCCGAC
* * * * * * *
21243462 CGGCTGAGCGCCCGTA-AGCTCGTTTCATGGGTTGACTTCGGTATATGGAGTTTATCCCCA-GTC
119 CGGCTGAGCG-CCGCACA-CCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTAT-TCCATGTC
21243525 TAA
181 TAA
* * * **
21243528 GCATACAGAGTTTATTCCCAGTCTAAGATCAGATTAGATTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * *
21243593 GCACGTAAGGGGGACCGGACCGATCCCAGACCTACACATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACGCAAGGGGGACCGGATCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
21243658 TGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
131 -GCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
21243712 GC
1 GC
21243714 CCCAGTCCAA
Statistics
Matches: 308, Mismatches: 55, Indels: 38
0.77 0.14 0.09
Matches are distributed among these distances:
183 5 0.02
184 145 0.47
185 2 0.01
186 1 0.00
187 5 0.02
188 2 0.01
192 1 0.00
193 4 0.01
194 1 0.00
195 1 0.00
196 133 0.43
197 6 0.02
198 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAAGGGGGACCGGATCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
GCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
Found at i:21243894 original size:26 final size:26
Alignment explanation
Indices: 21243858--21243907 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21243848 GTTGACTTAG
*
21243858 GCATGCGGAGTTCATCCCCAGTCTGA
1 GCATACGGAGTTCATCCCCAGTCTGA
*
21243884 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
21243908 AAAATCAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTGA
Found at i:21244208 original size:26 final size:26
Alignment explanation
Indices: 21244179--21244231 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21244169 GTTGGCTTAG
*
21244179 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21244205 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21244231 G
1 G
21244232 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21244931 original size:26 final size:26
Alignment explanation
Indices: 21244901--21244953 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21244891 GTTGACTTAG
*
21244901 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21244927 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21244953 G
1 G
21244954 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Done.