Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 113 of 125
Found at i:21245235 original size:159 final size:158
Alignment explanation
Indices: 21244967--21245271 Score: 416
Period size: 159 Copynumber: 1.9 Consensus size: 158
21244957 AAACCGAATC
* * * *
21244967 GAGGGTTGTGGCAATAGGATCGGCAGCACGCAAGGGGGACCGGGCCGATCACCGACTTGTGCATT
1 GAGGGTTGTAGCAACAGGACCGGCAGCACGCAAGGGGGACCGGGCCGATCACCGACTTGCGCATT
* * *
21245032 CTACCTCTCCGACCGGCTGATAACCTGTACGCCCATTTCGTGGGTTGGCATAGGCATAGGGAGTT
66 CTACCTCTCCGACCGGCTGATAACCTGCACGCCCATTTCATGGGTTGGCATAGGCATACGGAGTT
21245097 CATTCCATGTCTAAGCCCCAGCCAAACT
131 CATTCCATGTCTAAGCCCCAGCCAAACT
* * * * **
21245125 GAGGGTTGTAGCAGCAGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGTGT
1 GAGGGTTGTAGCAACAGGACCGGCAGCACGCA-AGGGGGACCGGGCCGATCACCGACTTGCGCAT
* * * *
21245190 TCTGCCTCTCCGACCGGCTGAGT-GCAC-GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGA
65 TCTACCTCTCCGACCGGCTGA-TAAC-CTGCACGCCCATTTCATGGGTTGGCATAGGCATACGGA
21245253 GTTCATTCCATGTCTAAGC
128 GTTCATTCCATGTCTAAGC
21245272 ATACGGAGTG
Statistics
Matches: 127, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
158 28 0.22
159 97 0.76
160 2 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GAGGGTTGTAGCAACAGGACCGGCAGCACGCAAGGGGGACCGGGCCGATCACCGACTTGCGCATT
CTACCTCTCCGACCGGCTGATAACCTGCACGCCCATTTCATGGGTTGGCATAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCCAAACT
Found at i:21245274 original size:26 final size:26
Alignment explanation
Indices: 21245244--21245295 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21245234 GTTGGCTTAG
*
21245244 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTGCATTCCTA-GTCTAA
21245270 GCATACGGAGTGCATTCCTAGTCTAA
1 GCATACGGAGTGCATTCCTAGTCTAA
21245296 AAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCTAGTCTAA
Found at i:21246014 original size:26 final size:26
Alignment explanation
Indices: 21245977--21246029 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21245967 GTTGACTTAG
*
21245977 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
21246003 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21246029 G
1 G
21246030 ATCGAACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21246356 original size:26 final size:26
Alignment explanation
Indices: 21246320--21246371 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21246310 GTTGGCTTAG
21246320 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
21246346 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21246372 AAGTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21247073 original size:26 final size:26
Alignment explanation
Indices: 21247043--21247095 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21247033 ATTGACTTAG
*
21247043 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
21247069 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
21247095 G
1 G
21247096 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:21247380 original size:159 final size:159
Alignment explanation
Indices: 21247144--21247471 Score: 442
Period size: 159 Copynumber: 2.1 Consensus size: 159
21247134 GCATGCAGGA
* * * ** *
21247144 GGGACCGGGTTGATCCCCGACTTGCGCATTCTGCCTCGTCGACCGACTGAGCGTCCGCACGCCTA
1 GGGATCGGGCTGATCCCCGACTTGCGCATTCTACCTCGTCGACCGACTGAGCACCCACACGCCTA
* *
21247209 TTTTGTGGGTTGGCTTAGGCATAGGAAGTTCATTCGATGTCTAAGCCACAGCCAGACCGAGGGTT
66 TTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTT
* *
21247274 GTGGCAGCGGGACCGATAGCACGTAGAAG
131 GTGGCAGCGGGACCGACAGCACGCAGAAG
* ** *
21247303 GGGATCGGGCTGATCCCCGACTTGCGCATTCTACCTC-TCCGATCGGTTGAGCACCCACATGCCT
1 GGGATCGGGCTGATCCCCGACTTGCGCATTCTACCTCGT-CGACCGACTGAGCACCCACACGCCT
* * * * *
21247367 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAGCCAGACTGAGGGT
65 ATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGT
* * *
21247432 TGTGGTAGCGGGACCGGCAGCACGCAGAGG
130 TGTGGCAGCGGGACCGACAGCACGCAGAAG
21247462 GGGATCGGGC
1 GGGATCGGGC
21247472 CAATCCCTGG
Statistics
Matches: 146, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
158 1 0.01
159 145 0.99
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.22
Consensus pattern (159 bp):
GGGATCGGGCTGATCCCCGACTTGCGCATTCTACCTCGTCGACCGACTGAGCACCCACACGCCTA
TTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTT
GTGGCAGCGGGACCGACAGCACGCAGAAG
Found at i:21247530 original size:159 final size:159
Alignment explanation
Indices: 21247201--21247592 Score: 416
Period size: 159 Copynumber: 2.5 Consensus size: 159
21247191 TGAGCGTCCG
* * *
21247201 CACGCCTATTTTGTGGGTTGGCTTAGGCATAGGAAGTTCATTCGATGTCTAAGCCACAGCCAGAC
1 CACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCACAGCCAGAC
* * ** *
21247266 CGAGGGTTGTGGCAGCGGGACCGATAGCACGTAGAAGGGGATCGGGCTGATCCCCGACTTGCGCA
66 CGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCCCGACTTACGCA
* * * *
21247331 TTCTACCTCTCCGATCGGTTGAGCACCCA
131 TTATACCTCTCCGATCGGCTCAACACCCA
* * * *
21247360 CATGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAGCCAGAC
1 CACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCACAGCCAGAC
* * * * * *
21247425 TGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGGGATCGGGCCAATCCCTGGCTTACGCA
66 CGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCCCGACTTACGCA
* * * * *
21247490 TTATGCCTCTTCG-GCTGGCTCAATACCCG
131 TTATACCTCTCCGATC-GGCTCAACACCCA
* * * * *
21247519 CACG-CTCGTTTCGTTGGTTGACTTATGCATACGAAGTTTATTCCCA-GTCTAAG--ATCAGACC
1 CACGCCT-GTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATT-CCATGTCTAAGCCA-CAG-CC
21247580 AGACCGAGGGTTG
62 AGACCGAGGGTTG
21247593 CAGTAGTAGG
Statistics
Matches: 191, Mismatches: 37, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
158 6 0.03
159 182 0.95
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCACAGCCAGAC
CGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCCCGACTTACGCA
TTATACCTCTCCGATCGGCTCAACACCCA
Found at i:21247834 original size:190 final size:190
Alignment explanation
Indices: 21247505--21247850 Score: 478
Period size: 190 Copynumber: 1.8 Consensus size: 190
21247495 CCTCTTCGGC
* * * * *
21247505 TGGCTCAATACCCGCACGCTCGTTTCGTTGGTTGACTTATGCATACGAAGTTTATTCCCAGTCTA
1 TGGCTCAATACCCGCACACTCGTTTCGTGGGTTGACTTACGCATACGAAGTTCATTCCCAATCTA
* * * * *
21247570 AGATCAGACCAGACCGAGGGTTGCAGTAGTAGGATCGACAGCACGTAGGGAGGATCGGGTCGGTC
66 AGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAACAGCACGTAGGGAGGATCAGGTCGATC
*
21247635 TCTGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCTCCCGTACGCCCGTTTCTTGGGT
131 TCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCTCCCGTACGCCCGTTTCTTGGGT
* * *
21247695 TGGCTCAGTGCCCGCACACTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAATCTA
1 TGGCTCAATACCCGCACACTCGTTTCGTGGGTTGACTTACGCATACGAAGTTCATTCCCAATCTA
* ** ** * **
21247760 GGATTGGACCAGATGGAGGGTTGC-GACAGCAGGATCAATAGCACGTAGGTTGGATCAGGTCGAT
66 AGATCAGACCAGACCGAGGGTTGCAG-CAGCAGGATCAACAGCACGTAGGGAGGATCAGGTCGAT
21247824 CTCCGGCTTGCGCATTCTGCCTCTCCG
130 CTCCGGCTTGCGCATTCTGCCTCTCCG
21247851 GTAGGCTGAG
Statistics
Matches: 133, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
189 1 0.01
190 132 0.99
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.26
Consensus pattern (190 bp):
TGGCTCAATACCCGCACACTCGTTTCGTGGGTTGACTTACGCATACGAAGTTCATTCCCAATCTA
AGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAACAGCACGTAGGGAGGATCAGGTCGATC
TCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCTCCCGTACGCCCGTTTCTTGGGT
Found at i:21247863 original size:190 final size:190
Alignment explanation
Indices: 21247505--21247889 Score: 475
Period size: 190 Copynumber: 2.0 Consensus size: 190
21247495 CCTCTTCGGC
* * * * *
21247505 TGGCTCAATACCCGCACGCTCGTTTCGTTGGTTGACTTATGCATACGAAGTTTATTCCCAGTCTA
1 TGGCTCAATACCCGCACACTCGTTTCGTGGGTTGACTTACGCATACGAAGTTCATTCCCAATCTA
* * * * *
21247570 AGATCAGACCAGACCGAGGGTTGCAGTAGTAGGATCGACAGCACGTAGGGAGGATCGGGTCGGTC
66 AGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAACAGCACGTAGGGAGGATCAGGTCGATC
* * * * * *
21247635 TCTGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCTCCCGTACGCCCGTTTCTTGGGT
131 TCCGGCTTGCGCATTCTGCCTCTCCGACAGGCTGAGCTCCCGCACACCCGTTTCGTGGGT
* * *
21247695 TGGCTCAGTGCCCGCACACTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAATCTA
1 TGGCTCAATACCCGCACACTCGTTTCGTGGGTTGACTTACGCATACGAAGTTCATTCCCAATCTA
* ** ** * **
21247760 GGATTGGACCAGATGGAGGGTTGC-GACAGCAGGATCAATAGCACGTAGGTTGGATCAGGTCGAT
66 AGATCAGACCAGACCGAGGGTTGCAG-CAGCAGGATCAACAGCACGTAGGGAGGATCAGGTCGAT
** * *
21247824 CTCCGGCTTGCGCATTCTGCCTCTCCGGTAGGCTGAGCTCCTGCACACTCGTTTCGTGGGT
130 CTCCGGCTTGCGCATTCTGCCTCTCCGACAGGCTGAGCTCCCGCACACCCGTTTCGTGGGT
21247885 TGGCT
1 TGGCT
21247890 TAGGCATACG
Statistics
Matches: 163, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
189 1 0.01
190 162 0.99
ACGTcount: A:0.18, C:0.26, G:0.29, T:0.27
Consensus pattern (190 bp):
TGGCTCAATACCCGCACACTCGTTTCGTGGGTTGACTTACGCATACGAAGTTCATTCCCAATCTA
AGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAACAGCACGTAGGGAGGATCAGGTCGATC
TCCGGCTTGCGCATTCTGCCTCTCCGACAGGCTGAGCTCCCGCACACCCGTTTCGTGGGT
Found at i:21247929 original size:26 final size:26
Alignment explanation
Indices: 21247893--21247945 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21247883 GTTGGCTTAG
21247893 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21247919 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21247945 G
1 G
21247946 ATTTTGAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21249868 original size:26 final size:26
Alignment explanation
Indices: 21249839--21249891 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21249829 ATTGACTTAG
* * *
21249839 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
*
21249865 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
21249891 G
1 G
21249892 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:21250185 original size:159 final size:158
Alignment explanation
Indices: 21249899--21250199 Score: 354
Period size: 159 Copynumber: 1.9 Consensus size: 158
21249889 AAGATCGGAT
* *
21249899 CAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCAGATCGATCCCTGGCTTG
1 CAGACCGAGGGTTGCAGCAGCAGGACCGACAGCACGCAGGGGGGACCAGATCGATCCCTGGCTTA
* *** ** * * * *
21249964 CGCATTCTACCTCTCTGGCCGGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
66 CGCATTATACCTCTCCAACCCATTGAGCGCCCGAACGCCCATTTCATGGGTTGACTTAGGCATAC
21250029 GGAGTTCATTCCATGTCTAAGCCCTAGC
131 GGAGTTCATTCCATGTCTAAGCCCTAGC
** * *
21250057 CAGACCGAGGGTTGTGGTAGC-GAGACCGACAGCACGCAGAGGGGGACC-GAGCTGATCCCTGGC
1 CAGACCGAGGGTTGCAGCAGCAG-GACCGACAGCACGCAG-GGGGGACCAGATC-GATCCCTGGC
* * * * * * *
21250120 TTACGCATTATGCCTCTCCAACCCATTTAGTGCCTGAACGCTCATTTCGTGGGTTGATTTAGGCA
63 TTACGCATTATACCTCTCCAACCCATTGAGCGCCCGAACGCCCATTTCATGGGTTGACTTAGGCA
21250185 TACGGAGTTCATTCC
128 TACGGAGTTCATTCC
21250200 CAATCTAAGC
Statistics
Matches: 117, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 36 0.31
159 80 0.68
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
CAGACCGAGGGTTGCAGCAGCAGGACCGACAGCACGCAGGGGGGACCAGATCGATCCCTGGCTTA
CGCATTATACCTCTCCAACCCATTGAGCGCCCGAACGCCCATTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCTAGC
Found at i:21250722 original size:26 final size:26
Alignment explanation
Indices: 21250685--21250737 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21250675 GTTGACTTAG
21250685 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21250711 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21250737 G
1 G
21250738 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21251004 original size:158 final size:156
Alignment explanation
Indices: 21250775--21251264 Score: 470
Period size: 158 Copynumber: 3.1 Consensus size: 156
21250765 CAAGATCGGT
* *
21250775 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGTCGGCTAAGCAC
1 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAG--C
**
21250840 CCGCACGCCCGTTTCATGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
64 GTGCACGCCCGTTTCATGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
*
21250905 GACGGAAGGTTGTGGCAGCGGGACTGAC
129 GACCGAAGGTTGTGGCAGCGGGACTGAC
* * * * *
21250933 AGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGTGCATTATGCCTCTTCGGTCAGCTCAGCG
1 AGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGC-
* * * * * * **
21250998 GTGCACGCTCATTTCGTGGG-TTGACTTATGCATACGGAGTTCATT-CTTAGTCTAAG-ATCAGA
64 GTGCACGCCCGTTTCATGGGTTTG-CTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGCCCCAG-
* * * * *
21251060 CCGGACTG-AGTGTTGCGACAGCAGGATCTG-T
126 CCGGACCGAAG-GTTGTGGCAGCGGGA-CTGAC
* * ** * ** *
21251091 AGCACGTAGGAGGGATTTGGTCGATCCTCGGCTTGTGCATTCTATCTCTCCGGTCGGCTGAGCGT
1 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGT
* * * * *
21251156 CCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCA
66 --GCACGCCCGTTTCATGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* *
21251221 AACCGAGGGTTGTGGCAGCGGGA-TCGAC
129 GACCGAAGGTTGTGGCAGCGGGACT-GAC
*
21251249 AGCACACAGAGGGGGA
1 AGCACGCAG-GGGGGA
21251265 CCAGACTGAT
Statistics
Matches: 259, Mismatches: 57, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 55 0.21
158 139 0.54
159 62 0.24
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGT
GCACGCCCGTTTCATGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
CCGAAGGTTGTGGCAGCGGGACTGAC
Found at i:21253978 original size:24 final size:24
Alignment explanation
Indices: 21253951--21254012 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
21253941 TGAGAACTCG
* *
21253951 TGGTCCACTGACTAACGTAGCTCA
1 TGGTCCACTGACCAACGCAGCTCA
*
21253975 TGGTCCACTGACCAATGCAGCTCA
1 TGGTCCACTGACCAACGCAGCTCA
21253999 TGGTCCACTGACCA
1 TGGTCCACTGACCA
21254013 TCCCACTTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (24 bp):
TGGTCCACTGACCAACGCAGCTCA
Found at i:21256207 original size:26 final size:26
Alignment explanation
Indices: 21256177--21256255 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
21256167 GTTGACTTAG
21256177 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
21256203 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21256229 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21256255 G
1 G
21256256 ATCAGACCAG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21256596 original size:26 final size:26
Alignment explanation
Indices: 21256546--21256598 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
21256536 GTTGGCTTAG
*
21256546 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
21256572 GCATAC-GAAGTTCATTCCCA-ATCTAA
1 GCATACAG-AGTTCATT-CCATATCTAA
21256598 G
1 G
21256599 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:21257299 original size:26 final size:26
Alignment explanation
Indices: 21257269--21257321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21257259 GTTGACTTAG
*
21257269 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
21257295 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21257321 G
1 G
21257322 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21258086 original size:342 final size:344
Alignment explanation
Indices: 21257439--21258189 Score: 883
Period size: 342 Copynumber: 2.2 Consensus size: 344
21257429 CTCTTCGGTT
* * * * *
21257439 GGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACCA-AGTTCA-TCCCTAGTAT
1 GGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATA-CAGAGTTCATTCCATAGTCT
* * *
21257502 CAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGCTACGGCAGTAGGATCGG
65 AAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGCTACGGCAGTAGGATCGA
* * *** *
21257567 CAGAATGCAGGAGGGACTAGGTTGATCCCTGACTTACGCATTCTGCCTCTCAAGTCGGCTGAGCG
130 CAGAACGCAGGAGGGACGAGGCCAATCCCTGACTTACGCATTCTACCTCTCAAGTCGGCTGAGCG
** * *
21257632 CCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCAATGTCTAAGCCCAAGCC
195 CCCGCACACCCATTTCATGGGATGGCTTAGGCATAAGGAGTTCATTCAATGTCTAAGCCCAAGCC
* * * *
21257697 AGACCGAGGGTTGTGGCAGCGGGACCGGCAGCATGCAGAGTGGGACCAGGCTGATCCCCAGCTTG
260 AGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCAGCTTG
* *
21257762 CGCATTCTGCCTCTC-GACC
325 CGCATTATGCCTCTCTAACC
* * * * *
21257781 GGCTAAGCGCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTA
1 GGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATAGTCTA
* * * * *
21257845 AGGATATCG-AGTTCATTCCCAGTCTAAGATTGAATCAGACCGAGGGTTACGGTAGTAGGATCTA
66 AGCATA-CGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGCTACGGCAGTAGGATCGA
* * * ** *
21257909 TAGCACGCATGG-GGGACCGA-GCCAAT-CCTCGGCTTGTGCATTCTACCTCTC-CGATCGGCTG
130 CAGAACGCA-GGAGGGA-CGAGGCCAATCCCT-GACTTACGCATTCTACCTCTCAAG-TCGGCTG
* * * * *
21257970 AGTGCCCGTACACCCATTTCATGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
191 AGCGCCCGCACACCCATTTCATGGGATGGCTTAGGCATAAGGAGTTCATTCAATGTCTAAGCCCA
*** * *
21258035 AGTTGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCAGGCCGATCCCCGG
256 AGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCAG
*
21258100 CTTGCGCATTATGCCTCTCTAATC
321 CTTGCGCATTATGCCTCTCTAACC
* * * *
21258124 GGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTGGGCATACAGAGTTCATT-CATAGTCTA
1 GGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATAGTCTA
21258188 AG
66 AG
21258190 ATCGGATCAG
Statistics
Matches: 341, Mismatches: 59, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
341 5 0.01
342 271 0.79
343 65 0.19
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (344 bp):
GGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATAGTCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGCTACGGCAGTAGGATCGAC
AGAACGCAGGAGGGACGAGGCCAATCCCTGACTTACGCATTCTACCTCTCAAGTCGGCTGAGCGC
CCGCACACCCATTTCATGGGATGGCTTAGGCATAAGGAGTTCATTCAATGTCTAAGCCCAAGCCA
GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGC
GCATTATGCCTCTCTAACC
Found at i:21258328 original size:26 final size:26
Alignment explanation
Indices: 21258292--21258344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21258282 GTTGACTTAG
*
21258292 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21258318 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21258344 G
1 G
21258345 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21258526 original size:26 final size:26
Alignment explanation
Indices: 21258476--21258528 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21258466 GTTGGCTTAG
*
21258476 GCATAGGGAGTTCATTCCTTATCTAA
1 GCATAGGGAGTTCATTCCTCATCTAA
*
21258502 GCATATGGAGTTCATTCC-CAGTCTAA
1 GCATAGGGAGTTCATTCCTCA-TCTAA
21258528 G
1 G
21258529 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCTCATCTAA
Found at i:21260002 original size:26 final size:26
Alignment explanation
Indices: 21259966--21260018 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21259956 GTTAGCTTAG
21259966 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21259992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21260018 G
1 G
21260019 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21260198 original size:26 final size:26
Alignment explanation
Indices: 21260168--21260227 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
21260158 TAGGCAAACA
*
21260168 GAGTTCATCCCCAATCTAAGCATATG
1 GAGTTCATCCCCAATCTAAGCATACG
** *
21260194 GAGTTCATTTCCAGTCTAAGCATACG
1 GAGTTCATCCCCAATCTAAGCATACG
*
21260220 AAGTTCAT
1 GAGTTCAT
21260228 TCCCGAACCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GAGTTCATCCCCAATCTAAGCATACG
Found at i:21260965 original size:26 final size:26
Alignment explanation
Indices: 21260929--21260981 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21260919 GTTGGCTTAG
21260929 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21260955 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21260981 G
1 G
21260982 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21261170 original size:26 final size:26
Alignment explanation
Indices: 21261125--21261175 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
21261115 GTTGACTTAG
*
21261125 GCATACAGAGTTCGTCCCTAATCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
* * *
21261151 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACAGAGTTCATCCCTAATCTA
21261176 GGATCGGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:21261650 original size:26 final size:26
Alignment explanation
Indices: 21261611--21261663 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21261601 GTTGGCTTAG
21261611 GCATACAGAATTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
* *
21261637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
21261663 G
1 G
21261664 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:21261861 original size:26 final size:26
Alignment explanation
Indices: 21261832--21261884 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21261822 GTTGACTTAG
21261832 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21261858 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21261884 G
1 G
21261885 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21262210 original size:26 final size:26
Alignment explanation
Indices: 21262174--21262226 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21262164 GTTGGCTTAG
*
21262174 GCATGCGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
21262200 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
21262226 G
1 G
21262227 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:21262934 original size:26 final size:26
Alignment explanation
Indices: 21262898--21262948 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21262888 TGACTTAGGT
21262898 ATACGGAGTTCA-TCCCAAGTCTAAGC
1 ATACGGAGTTCATTCCC-AGTCTAAGC
21262924 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
21262949 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:21263386 original size:26 final size:26
Alignment explanation
Indices: 21263349--21263401 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21263339 GTTGGCTTAG
21263349 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCAT-TCTAA
*
21263375 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAAAGTTCATTCCCATTCTAA
21263401 G
1 G
21263402 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCATTCTAA
Found at i:21263992 original size:500 final size:502
Alignment explanation
Indices: 21262991--21264047 Score: 1336
Period size: 500 Copynumber: 2.1 Consensus size: 502
21262981 GGAGTTCATT
* * * *
21262991 CGGCTGAGCGCCCGCACGCACGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
*** *
21263056 AGCCCCAGCTGGACCGAGGGTAGTGGCAGTGGGACCGACAGCACCTAGAGGGGGACTAGGCCAAT
66 AGCCCCAGCCAAACCGAGGGTAGTGGCAGTGGGACCAACAGCACCTAGAGGGGGACTAGGCCAAT
** * * * *
21263121 CCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGAACGATCATTTCTTGGGTTGAC
131 CCCCAACTTACGCATTATGCCTCCCCGACCGGCTCAGCGCCCGAACGATCATTTCATGGGTTGAC
* ** * ***
21263186 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGATGATTGTGGCAATAGGATC
196 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGACGATTGCAACAATAGGATC
* * * * * ** *
21263251 AACAGCATGCAGGAGGGGATCAGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGTTAA
261 AACAACACGCAAGAGGGGACCAGGTCGGTCCCCGGCTTGAGCATTCTGCCTCTCCGACCGGCTAA
*
21263316 GTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATAC
326 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATAC
* * * * *
21263381 AGAGTTCATTCCCATTCTAAGATCAGACTAGACTGAAGGTTGGGACAGCAGGATCGATAGCACGC
391 AAAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAAGGTTGGGACAGCAGGATCGACAACACGC
* * * *
21263446 AAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCACTTCGAC
456 AAGGGGGATCCGGATGATCCCCGACTTGCACATTCTGCCACTTCGAC
* *
21263493 CGGCTGAGTGCCCGCACACTCGTCTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* *
21263558 AG-CCCAGCCAAACCGAGGGTTGTGGCAGTGGGACCAACAGCATGC-AGAGGGGGACTAGGCCAA
66 AGCCCCAGCCAAACCGAGGGTAGTGGCAGTGGGACCAACAGCA-CCTAGAGGGGGACTAGGCCAA
* ** * *
21263621 TCCTCAACTTACGCATTATGCCTCCCCGGTCGGCTCAGCGCCCGAACGCTCATTTCATGGTTTGA
130 TCCCCAACTTACGCATTATGCCTCCCCGACCGGCTCAGCGCCCGAACGATCATTTCATGGGTTGA
* * * *
21263686 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAAATCGACGGTTGCAACAGTAGGAT
195 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGACGATTGCAACAATAGGAT
* * * *
21263751 CAACAACACGTAAG-GGGGACC-GAGTCGGTCCTCGGCTTGAGCATTTTGCCTTTCCGACCGGCT
260 CAACAACACGCAAGAGGGGACCAG-GTCGGTCCCCGGCTTGAGCATTCTGCCTCTCCGACCGGCT
* * * ***
21263814 GAGCGCCTGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGCAT
324 AAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCAT
* * * * *
21263879 ACAAAGTTCATTCTCAGTCTAAGATCGGACTAGACCGAGGGTTGCGG-TAGCAGGATCGGCAACA
389 ACAAAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAAGGTTG-GGACAGCAGGATCGACAACA
* *
21263943 CG-TAGGGTGGA-CCGGATAGATCCCCGACTTGCACATTCTGCCTCTTCGAC
453 CGCAAGGG-GGATCCGGAT-GATCCCCGACTTGCACATTCTGCCACTTCGAC
* * * * * * *
21263993 TGGCTGAGTGCCCGCATGCTCATTTCGTAGGTTGACTTAGGCGTACGGAGTTCAT
1 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
21264048 CCCCAGTCTA
Statistics
Matches: 472, Mismatches: 78, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
499 9 0.02
500 228 0.48
501 173 0.37
502 62 0.13
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (502 bp):
CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGCCAAACCGAGGGTAGTGGCAGTGGGACCAACAGCACCTAGAGGGGGACTAGGCCAAT
CCCCAACTTACGCATTATGCCTCCCCGACCGGCTCAGCGCCCGAACGATCATTTCATGGGTTGAC
TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGACGATTGCAACAATAGGATC
AACAACACGCAAGAGGGGACCAGGTCGGTCCCCGGCTTGAGCATTCTGCCTCTCCGACCGGCTAA
GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATAC
AAAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAAGGTTGGGACAGCAGGATCGACAACACGC
AAGGGGGATCCGGATGATCCCCGACTTGCACATTCTGCCACTTCGAC
Found at i:21264016 original size:184 final size:183
Alignment explanation
Indices: 21263691--21264240 Score: 542
Period size: 184 Copynumber: 3.0 Consensus size: 183
21263681 TTTGACTTAG
* * ** * **
21263691 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAAATCGACGGTTGCAACAGTAGGATCAACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
21263756 ACACGTAAGGGGGACC-GAGTCGGTCCTCGGCTTGAGCATTTTGCCT-TTCCGACCGGCTGAGCG
66 ACACGT-AGGGGGACCGGA-TAGATCCCCGGCTTGAGCATTCTGCCTCTT-CGACTGGCTGAGCG
*
21263819 CCTGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAA
128 CCTGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
21263875 GCATACAAAGTTCATTCTCAGTCTAAGATCGGA-CTAGACCGAGGGTTGCGGTAGCAGGATCGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATC-AGATCGAGGGTTGCGGCAGCAGGATCGGC
* *
21263939 AACACGTAGGGTGGACCGGATAGATCCCCGACTTGCA-CATTCTGCCTCTTCGACTGGCTGAGTG
65 AACACGTAGGG-GGACCGGATAGATCCCCGGCTTG-AGCATTCTGCCTCTTCGACTGGCTGAGCG
* * * * * * * *
21264003 CCCGCATGCTCATTTCGTAGGTTGACTTAGGCGTACGGAGTTCATCCCCA-GTCTAG
128 CCTGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
** * * * * *
21264059 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGATTGAGGGTTGTGGCATCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * ** * * *
21264124 GCACGCAGGGGGGACTGGGCCA-ATCCCCGGCTTGAGCATTCTGCCTCTCCG-GTCGGCTGAGCA
66 ACACGTA-GGGGGAC-CGGATAGATCCCCGGCTTGAGCATTCTGCCTCTTCGACT-GGCTGAGCG
*
21264187 CCTGCACGC-C-TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
128 CCTGCACGCTCAT-TTT-GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
21264241 CAGGCCCAGC
Statistics
Matches: 296, Mismatches: 56, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
182 1 0.00
183 13 0.04
184 267 0.90
185 15 0.05
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (183 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
ACACGTAGGGGGACCGGATAGATCCCCGGCTTGAGCATTCTGCCTCTTCGACTGGCTGAGCGCCT
GCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:21264068 original size:26 final size:26
Alignment explanation
Indices: 21264030--21264083 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
21264020 TAGGTTGACT
*
21264030 TAGGCGTACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
21264056 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
21264082 TA
1 TA
21264084 AGATTGGATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:21264361 original size:159 final size:158
Alignment explanation
Indices: 21264096--21264399 Score: 407
Period size: 159 Copynumber: 1.9 Consensus size: 158
21264086 ATTGGATCGG
* * *
21264096 ATTGAGGGTTGTGGCATCAGGATCGGCAGCACGCAGGGGGGACTGGGCCAATCCCCGGCTTGAGC
1 ATTGAGGGTTGTGGCATCAGGATCGGCAGCACGCAGGGGGGACCGGGCCAATCCCCGACATGAGC
** * *
21264161 ATTCTGCCTCTCCGGTCGGCTGAGCACCTGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGA
66 ATTCTGCCTCTCCGACCGGCTGAGCACATGCACACCTGTTTCATGGGTTGGCTTAGGCATACGGA
21264226 GTTCATTCCATGTCTCAGGCCCAGCCAA
131 GTTCATTCCATGTCTCAGGCCCAGCCAA
* * **
21264254 ATTGAGGGTTGTGGCAGT-GGGA-CTGGCAGCACGTAGAGGGGGACCGGGCTGATCCCCGACATG
1 ATTGAGGGTTGTGGCA-TCAGGATC-GGCAGCACGCAG-GGGGGACCGGGCCAATCCCCGACATG
* ** *
21264317 CGCATTCTGCCTCTCCGACCGGCTGAGTGCATGCACA-CTCGTTTCGTGGGTTGGCTTAGGCATA
63 AGCATTCTGCCTCTCCGACCGGCTGAGCACATGCACACCT-GTTTCATGGGTTGGCTTAGGCATA
*
21264381 CTGAGTTCATTCCATGTCT
127 CGGAGTTCATTCCATGTCT
21264400 AAGCATACGG
Statistics
Matches: 126, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
157 1 0.01
158 32 0.25
159 93 0.74
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
ATTGAGGGTTGTGGCATCAGGATCGGCAGCACGCAGGGGGGACCGGGCCAATCCCCGACATGAGC
ATTCTGCCTCTCCGACCGGCTGAGCACATGCACACCTGTTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTCAGGCCCAGCCAA
Found at i:21264412 original size:26 final size:26
Alignment explanation
Indices: 21264376--21264428 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21264366 GTTGGCTTAG
*
21264376 GCATACTGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21264402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21264428 G
1 G
21264429 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21265681 original size:26 final size:26
Alignment explanation
Indices: 21265652--21265702 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21265642 GTTGACTTAG
21265652 GCATACGGAGTTCA-TCCACAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
21265678 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
21265703 TGATCAAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21265884 original size:26 final size:26
Alignment explanation
Indices: 21265848--21265900 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21265838 GTTGACTTAG
* *
21265848 GCATATGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21265874 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21265900 G
1 G
21265901 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21266433 original size:27 final size:29
Alignment explanation
Indices: 21266395--21266449 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 29
21266385 TGGGTTGGCT
21266395 AGCATACGGAG-TCATCCCTAGT-CTAAA
1 AGCATACGGAGTTCATCCCTAGTACTAAA
21266422 AGCATACGGAGTTCATCCCTAGTACTAA
1 AGCATACGGAGTTCATCCCTAGTACTAA
21266450 GACGAACCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 11 0.42
28 11 0.42
29 4 0.15
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (29 bp):
AGCATACGGAGTTCATCCCTAGTACTAAA
Found at i:21273651 original size:26 final size:26
Alignment explanation
Indices: 21273622--21273674 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21273612 GTTGACTTAG
21273622 GCATATGCAGTTCATCCCCAGTCTAA
1 GCATATGCAGTTCATCCCCAGTCTAA
* * *
21273648 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATATGCAGTTCATCCCCAGTCTAA
21273674 G
1 G
21273675 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGCAGTTCATCCCCAGTCTAA
Found at i:21273965 original size:159 final size:158
Alignment explanation
Indices: 21273681--21274148 Score: 401
Period size: 159 Copynumber: 3.0 Consensus size: 158
21273671 TAAGATTGGA
* *
21273681 TCGGATCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGACCAGGCTGATCCCTGACTT
1 TCGGATCGAGGGTTACGGTAGCAGGATCGACAGCACACAGGGGGGACCAGGCTGATCCCCGACTT
* * * * * * * * *
21273746 ACGCATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACGCCCGTTTCGTCGGTTAGGTTAGGCATA
66 ACGCATTATGCCTCTCCGACCAGCTCAGTGCCCGAACACCCGTTTCATCGGTTAGCTTAGGCATA
*
21273811 GGGAGTTCATT-CCATGTCTAAGCCCCAG
131 CGGAGTTCATTCCCA-GTCTAAGCCCCAG
** * * * * *
21273839 TCGGATCGAGGGTTGTGGTAGC-GAGATCGATAGCACACAGATGGGGATCGGGCTGATCCCCGGC
1 TCGGATCGAGGGTTACGGTAGCAG-GATCGACAGCACACAG-GGGGGACCAGGCTGATCCCCGAC
* *
21273903 TTACGCATTATGCCTCTCCGACCAGCTCAGTGCCCGAACACTCGTTTCATGGGTT-GACTTAGGC
64 TTACGCATTATGCCTCTCCGACCAGCTCAGTGCCCGAACACCCGTTTCATCGGTTAG-CTTAGGC
**
21273967 ATACGGAGTTCATTCCCAGTCTAAG-ATCAG
128 ATACGGAGTTCATTCCCAGTCTAAGCCCCAG
* * * * * ** * * *
21273997 ACTGGACCGAGGGTTGCGGCAGCAAGATCGACAATACATA-GGGGGACCAGGTTGATCTCCGACT
1 TC-GGATCGAGGGTTACGGTAGCAGGATCGACAGCACACAGGGGGGACCAGGCTGATCCCCGACT
* * * * ** * * * * * * *
21274061 TGCACATTCTGCCTCTCTGGTCGGCTAAGCGCCC--ACACGCTCATTTCGTGGGTTGGCTTAGGC
65 TACGCATTATGCCTCTCCGACCAGCTCAGTGCCCGAACAC-C-CGTTTCATCGGTTAGCTTAGGC
*
21274124 AGACGGAGTTCATTCCCAGTCTAAG
128 ATACGGAGTTCATTCCCAGTCTAAG
21274149 ATCAGACTGG
Statistics
Matches: 250, Mismatches: 51, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
155 4 0.02
157 86 0.34
158 40 0.16
159 117 0.47
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
TCGGATCGAGGGTTACGGTAGCAGGATCGACAGCACACAGGGGGGACCAGGCTGATCCCCGACTT
ACGCATTATGCCTCTCCGACCAGCTCAGTGCCCGAACACCCGTTTCATCGGTTAGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCCCCAG
Found at i:21274320 original size:26 final size:26
Alignment explanation
Indices: 21274291--21274343 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21274281 GTTGACTTAG
*
21274291 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21274317 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21274343 G
1 G
21274344 ATTGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21275620 original size:158 final size:158
Alignment explanation
Indices: 21275394--21275736 Score: 413
Period size: 158 Copynumber: 2.2 Consensus size: 158
21275384 CGTAGTCTAA
* ** * **
21275394 GCATACAGAGTTCATTCTGAGTCTAAGATTAGACCGGATCAAGGGTTACGATAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCAAGGGTTACGAAAGCAAGATCGACA
* * * * * *
21275459 GCACGCAGGGGGGACCGAA-CCGAT-TCTCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGATCG
66 GCACGCAAGGGGGACC-AAGCCGATCCCT-GACTTGCACATTCTGCCTCTCAGACCGGTTGAGCG
* * *
21275522 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 ACCACACGCCCGTTTCATGGGTTAGCTTAG
** * *
21275552 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATGGAGGGTTACGAAAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCAAGGGTTACGAAAGCAAGATCGACA
* *
21275617 GCACGTAAGGGGGACCAAGCCGATCCCTGACTTGCACATTCTGCCTCTCAGGCCGGTTGAGCGAC
66 GCACGCAAGGGGGACCAAGCCGATCCCTGACTTGCACATTCTGCCTCTCAGACCGGTTGAGCGAC
* * *
21275682 CACATGCTCGTTTCGTGGGTTAGCTTAG
131 CACACGCCCGTTTCATGGGTTAGCTTAG
*
21275710 GCATACGGAGTTTATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
21275737 CATACGGAGT
Statistics
Matches: 157, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
157 5 0.03
158 150 0.96
159 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCAAGGGTTACGAAAGCAAGATCGACA
GCACGCAAGGGGGACCAAGCCGATCCCTGACTTGCACATTCTGCCTCTCAGACCGGTTGAGCGAC
CACACGCCCGTTTCATGGGTTAGCTTAG
Found at i:21275788 original size:26 final size:26
Alignment explanation
Indices: 21275710--21275779 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
21275700 GTTAGCTTAG
*
21275710 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
21275736 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
21275762 GCATACGAAGTTCATTCC
1 GCATACGGAGTTCATTCC
21275780 CAGTGTAAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21276133 original size:157 final size:157
Alignment explanation
Indices: 21275824--21276276 Score: 459
Period size: 157 Copynumber: 2.9 Consensus size: 157
21275814 AGGAGGACCA
* *
21275824 GTAGCAGGATC-GACAGCACGTATGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTC
1 GTAGCAGGATCAG-CAGCACGTATGGGGGACCGGCT-GATCCCCAGCTTGCGCATTCTGCCTCTC
* * * * ** *
21275888 TGGCCGACTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAAACATACGGAGTTTATTCCCA-
64 TGGCCGGCTGAGCGCCCGCAC-CCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
*
21275952 GTCTAAG-ATCAGACCGGACCGAGGGTTGA-G
127 GTCTAAGCACCAGACCGGACCGAGGGTT-ATG
* * * *
21275982 GTAGCAGCATCAGCAGCACGTA-GGGGGATCGTGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC
1 GTAGCAGGATCAGCAGCACGTATGGGGGACCG-GCTGATCCCCAGCTTGCGCATTCTGCCTCTCT
* * *
21276046 GGTCGGCTGAGCACCCGCACACCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
65 GGCCGGCTGAGCGCCCGCAC-CCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *
21276111 CTAAGCCCCAG-CTGGACCGAGGGTTATG
129 CTAAGCACCAGACCGGACCGAGGGTTATG
* * * * * * * * *
21276139 GCAGCGGGACCAGCAGCATGCAATGAGGGACCGAGCCGATCCCCAGCTTGCGCATTTTGCCTTTC
1 GTAGCAGGATCAGCAGCACG-TATGGGGGACCG-GCTGATCCCCAGCTTGCGCATTCTGCCTCTC
* * * * * * *
21276204 TAGCCGGCTGAGCGCCAGTACGCTCGTTTCATGGGTTGGCTTAGGGATACGAAGTTCATTCCATG
64 TGGCCGGCTGAGCGCCCGCACCCT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
21276269 TCTAAGCA
128 TCTAAGCA
21276277 TACGGAGTTC
Statistics
Matches: 242, Mismatches: 45, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
156 4 0.02
157 118 0.49
158 27 0.11
159 93 0.38
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GTAGCAGGATCAGCAGCACGTATGGGGGACCGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCTG
GCCGGCTGAGCGCCCGCACCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCACCAGACCGGACCGAGGGTTATG
Found at i:21276280 original size:26 final size:26
Alignment explanation
Indices: 21276250--21276300 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21276240 TGGCTTAGGG
21276250 ATACGAAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
*
21276276 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
21276301 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:21276997 original size:26 final size:26
Alignment explanation
Indices: 21276968--21277023 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
21276958 TGGGTTGACT
* *
21276968 TAAGCATATAGATTTCA-TCCTCAGTC
1 TAAGCATACAGAGTTCATTCC-CAGTC
*
21276994 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
21277020 TAAG
1 TAAG
21277024 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:21277209 original size:183 final size:188
Alignment explanation
Indices: 21276897--21277365 Score: 549
Period size: 183 Copynumber: 2.5 Consensus size: 188
21276887 TACCACCCAT
* * * *
21276897 TCGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGTCTGCACGCTCGTTTCGTGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
21276962 TTGACTTAAGCATATAGATTTCA-TCCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
66 TTGACTTAGGCATACAGAGTTCATTCCTCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* * ** *
21277026 CGGACCGGACCGAGGGTT-GC-G-A-TAGCAGGATCGGTAGAACGCAGGGGGACCGTG
131 CGGACCGAACCGAGGGTTAGCAGCAGCAGCAGGATCGACAGAACGCAGGGGGACCGGG
* * * * * *
21277080 TCGGTCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
21277145 TTGGCTTAGGCATACGGAGTTCATTCCAT-A-TCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
66 TTGACTTAGGCATACAGAGTTCATTCC-TCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* *
21277208 TCGGACCTAACCGAGGGTTACGGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGACCG
130 TCGGACCGAACCGAGGGTT-----AGCA-G--CAGCAGCAGGATCGACAGAACGCAGGGGGACCG
21277273 GG
187 GG
* * *
21277275 TCGATCCCC-AGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTTGTTTCGTGG
1 TCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGG
*
21277339 GTTGACTTAGGCATACAAAGTTCATTC
65 GTTGACTTAGGCATACAGAGTTCATTC
21277366 TTATTCTAAG
Statistics
Matches: 236, Mismatches: 35, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
183 122 0.52
184 4 0.02
185 1 0.00
189 2 0.01
191 1 0.00
194 2 0.01
195 104 0.44
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (188 bp):
TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACAGAGTTCATTCCTCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
CGGACCGAACCGAGGGTTAGCAGCAGCAGCAGGATCGACAGAACGCAGGGGGACCGGG
Found at i:21277532 original size:158 final size:157
Alignment explanation
Indices: 21277242--21277560 Score: 345
Period size: 158 Copynumber: 2.0 Consensus size: 157
21277232 AGCAGGACCA
* **** * * * *
21277242 GCAGCAGGATCGACAGCACGCAGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCG
1 GCAGCAGGATCAACAGCACGCAGGGGGACCCAACCGATCCCCAACTTGCGCATTCTACCTCTCCA
* * ** *
21277307 ATCGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCTTATTC
66 ACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCTCATTC
* *
21277372 TAAG-ATCAGACTAAACTGAGGGTTGCG
131 TAAGCACCAG-CCAAACTGAGGGTTGCG
* **
21277399 GCAGCAGGATCAACAGCACGCAGGGGGGACCCAACCGATCCCTAACTTGCGCATTCTACCTCTTT
1 GCAGCAGGATCAACAGCACGCA-GGGGGACCCAACCGATCCCCAACTTGCGCATTCTACCTCTCC
* * * * ***
21277464 AACCGGCTGAGCACCTGCACGCCCGTTTCGTGGGTTGGCTTAGGGATAGGGAGTTCATTC-CATG
65 AACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCTCAT-
* *
21277528 TCTAAGCCCCAGCCAGACTGAGGGTTGCG
129 TCTAAGCACCAGCCAAACTGAGGGTTGCG
21277557 GCAG
1 GCAG
21277561 TAAGACTGGC
Statistics
Matches: 131, Mismatches: 28, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
157 23 0.18
158 105 0.80
159 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCAGCAGGATCAACAGCACGCAGGGGGACCCAACCGATCCCCAACTTGCGCATTCTACCTCTCCA
ACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCTCATTC
TAAGCACCAGCCAAACTGAGGGTTGCG
Found at i:21277574 original size:158 final size:159
Alignment explanation
Indices: 21277331--21277693 Score: 338
Period size: 159 Copynumber: 2.3 Consensus size: 159
21277321 CGCACGCTTG
* ** * ** * *
21277331 TTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCTTAT-TCTAAG-ATCAGACTAAACTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCCAG-CCAGACTGAGGG
* * * * *
21277394 TTGCGGCAGCAGGATCAACAGCACGCAG-GGGGGACCCAACCGATCCCTAACTTGCGCATTCTAC
64 TTGCGGCAGCAAGATCAACAGCACGAAGAGGGAGACCCAACAGATCCCCAACTTGCGCATTCTAC
** * * *
21277458 CTCTTTAACCGGCTGAGCACCTGCACGCCCG
129 CTCTCCAACCGGCTGAGCACCTACACACCCA
* *
21277489 TTTCGTGGGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTT
* ** * *** ** * *
21277554 GCGGCAGTAAGA-CTGGCAGCACGAAGAGGGAGATCGGGCAGATCCCCGGCTTGCGTATTCTGCC
66 GCGGCAGCAAGATC-AACAGCACGAAGAGGGAGACCCAACAGATCCCCAACTTGCGCATTCTACC
* ** **
21277618 TCTCCGATTGGCTGAGCACCTACACACTTA
130 TCTCCAACCGGCTGAGCACCTACACACCCA
*
21277648 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21277694 ATACAAAGTT
Statistics
Matches: 162, Mismatches: 39, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
157 3 0.02
158 67 0.41
159 92 0.57
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTT
GCGGCAGCAAGATCAACAGCACGAAGAGGGAGACCCAACAGATCCCCAACTTGCGCATTCTACCT
CTCCAACCGGCTGAGCACCTACACACCCA
Found at i:21278796 original size:159 final size:159
Alignment explanation
Indices: 21278415--21278915 Score: 412
Period size: 159 Copynumber: 3.2 Consensus size: 159
21278405 CCCAGTCTAA
* * ** * * *
21278415 GCATACAAAGTTCATTCCTAGTCTAAGATCGGACTGGACCAAAGGTTACGGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * * * *
21278480 GCATGCAAAG-GGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGG-TCGACTAAGCG
66 GCACGCAAAGAGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCT-GGCTAAGCG
* *
21278543 CCCGCACAC-C-CATTATGTGGGTTGGCCTAG
130 CCCGCACGCTCGC-TT-TGTGGGTTGGCTTAG
** * * ** * * ** * *
21278573 GCATAGGGAGTTAATT-CCATGTCTAA-ACCACAGCCAGATCGAGGATTGTGGCAGCGGGACCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGA-CCAGACCGAGGGTTACGGCAGCAGGATCGA
* *
21278636 CAGCACGCAAAGAGGGACCGGGTCGATCCCCGACTTGCGTATTATGCCTCTTCGGCTGGCTCAGC
64 CAGCACGCAAAGAGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCTGGCTAAGC
* * *
21278701 ACCCGCACGCTCGCTTCGTGGGTTGACTTAG
129 GCCCGCACGCTCGCTTTGTGGGTTGGCTTAG
* *
21278732 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
** * * * * * ** *
21278797 GCACGCAGGGA-GAACTGGG-CTGATCCTCGACTTG-GCATTTTGCCTCTCTCGTC-GGCTGGGT
66 GCACGCAAAGAGGGACCGGGTC-GATCCCCGACTTGCGCATTATGCCTCT-TCGGCTGGCTAAGC
*
21278858 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
129 GCCCGCACGCTCGCTTTGTGGGTTGGCTTAG
* *
21278889 GCATACGGAGTTCACT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
21278916 CATACGGAGT
Statistics
Matches: 266, Mismatches: 66, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
156 3 0.01
157 69 0.26
158 70 0.26
159 113 0.42
160 10 0.04
161 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAAAGAGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCTGGCTAAGCGC
CCGCACGCTCGCTTTGTGGGTTGGCTTAG
Found at i:21278925 original size:26 final size:26
Alignment explanation
Indices: 21278889--21278941 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21278879 GTTGGCTTAG
21278889 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
21278915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
21278941 G
1 G
21278942 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:21279927 original size:635 final size:622
Alignment explanation
Indices: 21278730--21279957 Score: 1407
Period size: 635 Copynumber: 2.0 Consensus size: 622
21278720 GGGTTGACTT
* *
21278730 AGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAGGATCGA
1 AGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTACGGTAGCAGGATCGA
* ** * * *
21278795 CAGCACGCAGGGAGAACTGGGCTGATCCTCGACTTGGCATTTTGCCTCTCTCGTCGGCTGGGTGC
66 CAGCACGCAGGGAGAACTGGGCTGATCCCCGACTTCACATTCTGCCTCTCTCGTCGGCTGAGCGC
* * * * *
21278860 CCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGGAG
131 CCGCACGCTCGTTTTGTGGGCTGACTTAGGCATACAGAGTTCACCCCATATCTAAGCATACGGAG
* * ** *
21278925 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGCCTAACAGCAAGATCGG
196 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGACCTAACAGCAAGATCGG
* * * *
21278990 TAACACGCAAGGGGGGATCGGACCGATCCCTAGCTTACGCATTCTGCCTCTCCGGTCAGTTGAGT
261 CAACACACAAGGGGGGATCGGACCAATCCCTAGCTTACACATTCTGCCTCTCCGGTCAGTTGAGT
** * * *
21279055 GCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG
326 GCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTCCATCCCCAGTCTAAACAAACAG
* *
21279120 AGTTCATTCCCAGTCCAAGATCGGACTGGAGCAAGAGTTACAGAAAGAGGATCGATAGCATGCAA
391 AGTTCATTCCCAGTCCAAGATCGGACTGGACCAAGAGTTACAGAAAGAGGATCGACAGCATGCAA
* * * ** *
21279185 GGGGGACTAGGTCGATCCTCAGCTTGTGCATTCTAACTCTCCGGTCGGCTGAGTGCCCGCACGCC
456 GGGGGACTAGGCCGATCCTCAGCTTATGCATTCTAACTCTCCAGTCGGCTGAGAACCCGCACACC
* *
21279250 CGTTTTGTGAGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
521 CGTTTTGTGAGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
21279315 TTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGATG
586 TTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGATG
** * *
21279352 AGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTATGGTAGCAGGATCGA
1 AGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTACGGTAGCAGGATCGA
* * * *
21279417 TAGCACGTAGTGGAGATC-GGG-TCGATCCCCGACTTACACATTCTGCCTCTC-CGGTCTGCTGA
66 CAGCACGCAG-GGAGAACTGGGCT-GATCCCCGACTT-CACATTCTGCCTCTCTC-GTCGGCTGA
* *
21279479 GCGCCCGTACGCTCG-TTTGATGGGCTGACTTAGGCATATAGAG-TCATCCCCA-ATCTAAGCAT
127 GCGCCCGCACGCTCGTTTTG-TGGGCTGACTTAGGCATACAGAGTTCA-CCCCATATCTAAGCAT
* * *
21279541 ACGGAGTTCATTCCCAGT-TAAAGATCGGATCAGACCGAGGGTTGCGACAGCAAGACC-AGCAGC
190 ACGGAGTTCATTCCCAGTCT-AAGATCAGACCAGACCGAGGGTTGCGACAGC-AGACCTAACAGC
* * *
21279604 AGGATCGGCAGCACAC-AGGGGGGAATCGGGCCAATCCCT-GACTTACACATTC-GACCTCTCCG
253 AAGATCGGCAACACACAAGGGGGG-ATCGGACCAATCCCTAG-CTTACACATTCTG-CCTCTCCG
**
21279666 GTTGGCCTCTCCGGTAGGCTAAGCGCC-CACACGTTCGTTTCATGGGTTGACTTAGGCATAC-GA
315 GTCAG--T-T---G-A-G-T--GC-CCGCACAC--TCGTTTCATGGGTTGACTTAGGCATACAG-
* * * *
21279729 AGTCCATCCCCAGTCTAAACAAACATAGTTCATTCTCAGTCTAAGATCGGA-TCGGACCGACG-G
365 AGTCCATCCCCAGTCTAAACAAACAGAGTTCATTCCCAGTCCAAGATCGGACT-GGACC-AAGAG
** * * * *
21279792 TTAC-GGCAGCAGGATCGGCAGCATGCAAGGGGGAC-GGGACCTATCC-CTGGCTTATGCATTCT
428 TTACAGAAAG-AGGATCGACAGCATGCAAGGGGGACTAGG-CCGATCCTC-AGCTTATGCATTCT
*
21279854 ACCTCTCCAGTCGGCTGAGAACCCGCACACCCGTTTCT-T-AGGTTGGCTTAGGCATAGGAAGTT
490 AACTCTCCAGTCGGCTGAGAACCCGCACACCCGTTT-TGTGA-GTTGGCTTAGGCATAGGAAGTT
* *
21279917 CATTCCATGTCTAAGCCCCAGTCGGACCGCGGGTTGTGGCA
553 CATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
21279958 ATGGGACCCG
Statistics
Matches: 505, Mismatches: 68, Indels: 53
0.81 0.11 0.08
Matches are distributed among these distances:
621 11 0.02
622 192 0.38
623 65 0.13
624 1 0.00
625 1 0.00
628 1 0.00
629 1 0.00
630 1 0.00
631 1 0.00
633 7 0.01
634 11 0.02
635 210 0.42
636 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.22
Consensus pattern (622 bp):
AGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTACGGTAGCAGGATCGA
CAGCACGCAGGGAGAACTGGGCTGATCCCCGACTTCACATTCTGCCTCTCTCGTCGGCTGAGCGC
CCGCACGCTCGTTTTGTGGGCTGACTTAGGCATACAGAGTTCACCCCATATCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGACCTAACAGCAAGATCGG
CAACACACAAGGGGGGATCGGACCAATCCCTAGCTTACACATTCTGCCTCTCCGGTCAGTTGAGT
GCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTCCATCCCCAGTCTAAACAAACAG
AGTTCATTCCCAGTCCAAGATCGGACTGGACCAAGAGTTACAGAAAGAGGATCGACAGCATGCAA
GGGGGACTAGGCCGATCCTCAGCTTATGCATTCTAACTCTCCAGTCGGCTGAGAACCCGCACACC
CGTTTTGTGAGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
TTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGATG
Found at i:21280394 original size:159 final size:159
Alignment explanation
Indices: 21280082--21280462 Score: 496
Period size: 159 Copynumber: 2.4 Consensus size: 159
21280072 AGTAGGACCA
* * * * *** *
21280082 GCAGCAGGATCGGCAGCACGCAG-GGGGGATCGGATTGATCCCCAGCTTGCGCATTCTGCCTCTC
1 GCAGCAGGACCAGCAACACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * * *
21280146 CGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGATTTCATTCCATG
66 CGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATG
* *
21280211 TCTAAGCCCTAGCCAGACCGAGGGTTGTG
131 TCTAAGCCCCAGCCAGACCAAGGGTTGTG
** * * ** * *
21280240 GCAGTGGGACC-GACAGCATGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCGTATTCTACCTCT
1 GCAGCAGGACCAG-CAACACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
21280304 CCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCAT
65 CCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCAT
*
21280369 GTCTAAGCCCCAGCCGGACCAAGGGTTGTG
130 GTCTAAGCCCCAGCCAGACCAAGGGTTGTG
* **
21280399 GTAGCAGGACCAGCAACACGTTGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
1 GCAGCAGGACCAGCAACACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
21280463 TCGATCGGCT
Statistics
Matches: 188, Mismatches: 32, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
157 1 0.01
158 17 0.09
159 169 0.90
160 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.21
Consensus pattern (159 bp):
GCAGCAGGACCAGCAACACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
CGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATG
TCTAAGCCCCAGCCAGACCAAGGGTTGTG
Found at i:21281361 original size:22 final size:22
Alignment explanation
Indices: 21281336--21281378 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
21281326 CCAATCCTCG
21281336 GCTTGCGCATTTTACCTCTCCA
1 GCTTGCGCATTTTACCTCTCCA
*
21281358 GCTTGCGCATTTTGCCTCTCC
1 GCTTGCGCATTTTACCTCTCC
21281379 GACCAGTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.37, G:0.16, T:0.37
Consensus pattern (22 bp):
GCTTGCGCATTTTACCTCTCCA
Found at i:21281777 original size:26 final size:26
Alignment explanation
Indices: 21281741--21281791 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21281731 TGGCTTAGGC
*
21281741 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
21281767 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
21281792 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:21282315 original size:26 final size:26
Alignment explanation
Indices: 21282279--21282331 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21282269 GTTGGCTTAG
21282279 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21282305 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21282331 G
1 G
21282332 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21283075 original size:26 final size:26
Alignment explanation
Indices: 21282999--21283077 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
21282989 GTTGACTTAG
*
21282999 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
21283025 GCACACGGAGTTCA-TCACCAATCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
21283051 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21283077 G
1 G
21283078 ATCAGACCGG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.02
26 41 0.93
27 2 0.05
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21284279 original size:26 final size:26
Alignment explanation
Indices: 21284249--21284301 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21284239 GTTGACTTAG
*
21284249 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
21284275 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21284301 G
1 G
21284302 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21284736 original size:159 final size:157
Alignment explanation
Indices: 21284275--21284767 Score: 383
Period size: 159 Copynumber: 3.1 Consensus size: 157
21284265 CCTAGTCTAA
* ** **
21284275 GCATACAGAGTTCATTCCCAGTCTAAGATC-GAATTGGATCGAGGGTTGCAGCAGCAGGATCGGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACTGGATCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
21284339 AGCACGCAGGGGGGACCAGGTCT-ATCCCCGGCTTGCGCATTCTGCCCCTCC-AGCCGGCTGAGT
65 AGCACGTAGGGGGGA-C-GGACTGATCCCCGACTTGCGCATTCTGCCTCTCCGA-CTGGCTAAGC
* * * * *
21284402 GCCGGCACACCCGTTTCATGGGTTGGCTTAG
127 GCCCGCACGCTCATTTCATGGGTTGACTTAG
** * ** * * * * *
21284433 GCATAGGGAGTTCATT-CCATTTCTAAGCCCCAGTC-AGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGA
** * * * * * *
21284496 CAGCACGTAGAGGGGGACCAAGTCGATCCTC-AGCTTGCGTATTATGCCTCTCCGA-TCGACTCA
64 CAGCACGTAG-GGGGGACGGACT-GATCCCCGA-CTTGCGCATTCTGCCTCTCCGACT-GGCTAA
* * * * * *
21284559 GCACTCGAATGCTTATTTCGTGGGTTGACTTAG
125 GCGCCCGCACGCTCATTTCATGGGTTGACTTAG
* *
21284592 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGAAGGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGACA
*
21284657 GCACGTAGGGGAGGATCGGACTGGTCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTAAGCGC
66 GCACGTAGGGG-GGA-CGGACTGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTAAGCGC
* *
21284722 CCGCACGCTCATTTCAAGGGTT-AGTTTAG
129 CCGCACGCTCATTTCATGGGTTGA-CTTAG
21284751 GCATAC-GAAGTTCATTC
1 GCATACAG-AGTTCATTC
21284768 AATGTCTAAG
Statistics
Matches: 249, Mismatches: 69, Indels: 33
0.71 0.20 0.09
Matches are distributed among these distances:
157 4 0.02
158 59 0.24
159 176 0.71
160 10 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGACGGACTGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTAAGCGCCC
GCACGCTCATTTCATGGGTTGACTTAG
Found at i:21284978 original size:26 final size:26
Alignment explanation
Indices: 21284947--21284999 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21284937 ATAGACTTAG
21284947 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21284973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21284999 G
1 G
21285000 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21285000 original size:196 final size:197
Alignment explanation
Indices: 21284656--21285031 Score: 508
Period size: 196 Copynumber: 1.9 Consensus size: 197
21284646 AAGGATTGAC
* * * * *
21284656 AGCACGTAGGGGAGGATCGGACTGGTCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTAAGCG
1 AGCACGTAGAGGAGGATCGGACCGATCCCCGACTTGCGCATTCTACCTCTCCGACAGGCTAAGCG
* * * * *
21284721 CCCGCACGCTCATTTCAAGGGTTAGTTTAGGCATACGAAGTTCATTCAATGTCTAAGCATATGGA
66 CCCGCACGCTCATTTCAAGCGATAGCTTAGGCATACGAAGTTCATCCAATGTCTAAGCATACGGA
21284786 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTAC-AGCAGCAGGACCAGCAGTAGGATC
131 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGA-CAGCAGGACCAGCAGTAGGATC
21284850 GGT
195 GGT
* * * *
21284853 AGCACGTA-AGGAGGATTGGACCGATCCCCGACTTGTGCATTCTACCTCTCCGGCAGGCTGAGCG
1 AGCACGTAGAGGAGGATCGGACCGATCCCCGACTTGCGCATTCTACCTCTCCGACAGGCTAAGCG
* * * * *
21284917 CCTGCACGCTCGTTTC-ATCGATAGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACG
66 CCCGCACGCTCATTTCAAGCGATAG-CTTAGGCATACGAAGTTCAT-CCAATGTCTAAGCATACG
* *
21284980 GAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTACGACAGCAGGA
129 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGA
21285032 TCGACAGCAC
Statistics
Matches: 155, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
195 5 0.03
196 139 0.90
197 11 0.07
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (197 bp):
AGCACGTAGAGGAGGATCGGACCGATCCCCGACTTGCGCATTCTACCTCTCCGACAGGCTAAGCG
CCCGCACGCTCATTTCAAGCGATAGCTTAGGCATACGAAGTTCATCCAATGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGACCAGCAGTAGGATCG
GT
Found at i:21285509 original size:686 final size:692
Alignment explanation
Indices: 21284222--21285521 Score: 1714
Period size: 686 Copynumber: 1.9 Consensus size: 692
21284212 CTGACCGTCC
* * * *
21284222 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTT
1 GCACGCTCATTTCATCGATAGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
* * ** *
21284287 CATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGGGGG
66 CATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACAGCAGCAGGATCGACAGCACGCAGAGGG
* * * * *
21284352 GACCAGGTCTATCCCCGGCTTGCGCATTCTGCCCCTCCAGCCGGCTGAGTGCCGGCACACCCGTT
131 GACCAGGCCGATCCCCGACTTGCGCATTCTGCCCCTCCAGCCGGCTGAGCGCCGGCACACCCATT
* * *
21284417 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTTCTAAGCCCCAGTCAGACCGAGGGTTGT
196 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGT
** * * *
21284482 GGCAGCGGGACCGACAGCACGTAGAGGGGGACCAAGTCGATCCTCAGCTTGCGTATTATGCCTCT
261 GGCAGCGAAACCGACAGCACGCAGAGGGGGACCAAGCCGATCCCCAGCTTGCGTATTATGCCTCT
* * *
21284547 CCGATCGACTCAGCACTCGAATGCTTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA
326 CCGA--GA-TCAGCA--C-AATGCTCATTTCATGGGTTGACTTAGGCATACAGAGATCATTCCCA
* * * * * * *
21284612 GTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGAAGGATTGACAGCACGTAGGGGAGGATCGGA
385 GTCTAAGATCAAACTAGACCGAGGGTTGTAGCAGAAGGATTGACAGCACGTAAGAGAGGACCGGA
**
21284677 CTGGTCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTAAGCGCCCGCACGCTCATTTCAAGGG
450 CTGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTAAGCGCCCGCACGCTCATTTCAAGGG
* *
21284742 TTAGTTTAGGCATACGAAGTTCATTCAATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
515 TTAGCTTAGGCATACGAAGTTCATTCAATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
21284807 AGACCGGACTGAGGGTTACAGCAGCAGGACCAGCAGTAGGATCGGTAGCACGTAAGGAGGATTGG
580 AGACCGGACTGAGGGTTACAGCAGCAGGACCAGCAGTAGGATCGGTAGCACGTAAGGAGGATTGG
21284872 ACCGATCCCCGACTTGTGCATTCTACCTCTCCGGCAGGCTGAGCGCCT
645 ACCGATCCCCGACTTGTGCATTCTACCTCTCCGGCAGGCTGAGCGCCT
* *
21284920 GCACGCTCGTTTCATCGATAGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCATTTCATCGATAGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
* *
21284985 CATTCCCAGTCTAAGATC-AGATCGGATTGAGGGTTAC-GACAGCAGGATCGACAGCACGTA-AG
66 CATTCCCAGTCTAAGATCGA-ATCGGATCGAGGGTTACAG-CAGCAGGATCGACAGCACGCAGAG
* * **
21285047 GGGACC-GAGCCGATCCCCGACTTGCGCATTCTGCCTCTCC-GATCGGCTGAGCGCCCGG-ATGC
129 GGGACCAG-GCCGATCCCCGACTTGCGCATTCTGCCCCTCCAG-CCGGCTGAGCG-CCGGCACAC
*
21285109 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGG
191 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGG
* * * * ** *
21285174 GTTGTGGTAGTGAAACCGACAGCATGCAGAGGGGGATCGGGCCGATCCCCTGCTTGC-TCATTAT
256 GTTGTGGCAGCGAAACCGACAGCACGCAGAGGGGGACCAAGCCGATCCCCAGCTTGCGT-ATTAT
* *
21285238 GCCTCTCCG-G-TC-G-A-AATGCTCGTTTCATGGGTTGATTTAGGCATAC-GAAGATCATTCCC
320 GCCTCTCCGAGATCAGCACAATGCTCATTTCATGGGTTGACTTAGGCATACAG-AGATCATTCCC
*
21285297 AGTCTAAGATCAAACTAGACCGAGGGTTGTAGCAGCAGGATCT-ACAGCACGTAAGAGAGGACC-
384 AGTCTAAGATCAAACTAGACCGAGGGTTGTAGCAGAAGGAT-TGACAGCACGTAAGAGAGGACCG
* * * * * * *
21285360 GAGCTGGTCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGCCTGTACGCTCGTTTCAT
448 GA-CTGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTAAGCGCCCGCACGCTCATTTCAA
** * * *
21285425 GGGTTAGCTTAGGCATGTGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAG
512 GGGTTAGCTTAGGCATACGAAGTTCATTCAATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* **
21285490 ATCAGATCGGA-TCGAGGGTTGTAGCAGCAGGA
577 ATCAGACCGGACT-GAGGGTTACAGCAGCAGGA
21285522 TTAGCAACAT
Statistics
Matches: 522, Mismatches: 70, Indels: 32
0.84 0.11 0.05
Matches are distributed among these distances:
685 4 0.01
686 229 0.44
687 1 0.00
690 1 0.00
691 1 0.00
692 2 0.00
694 1 0.00
696 3 0.01
697 167 0.32
698 113 0.22
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (692 bp):
GCACGCTCATTTCATCGATAGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
CATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACAGCAGCAGGATCGACAGCACGCAGAGGG
GACCAGGCCGATCCCCGACTTGCGCATTCTGCCCCTCCAGCCGGCTGAGCGCCGGCACACCCATT
TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGT
GGCAGCGAAACCGACAGCACGCAGAGGGGGACCAAGCCGATCCCCAGCTTGCGTATTATGCCTCT
CCGAGATCAGCACAATGCTCATTTCATGGGTTGACTTAGGCATACAGAGATCATTCCCAGTCTAA
GATCAAACTAGACCGAGGGTTGTAGCAGAAGGATTGACAGCACGTAAGAGAGGACCGGACTGGTC
CCCGACTTGCGCATTCTGCCTCTCCGACCAGCTAAGCGCCCGCACGCTCATTTCAAGGGTTAGCT
TAGGCATACGAAGTTCATTCAATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
GACTGAGGGTTACAGCAGCAGGACCAGCAGTAGGATCGGTAGCACGTAAGGAGGATTGGACCGAT
CCCCGACTTGTGCATTCTACCTCTCCGGCAGGCTGAGCGCCT
Found at i:21285685 original size:26 final size:26
Alignment explanation
Indices: 21285632--21285687 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
21285622 TGGGTTGACT
* *
21285632 TAAGCATACGTAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAATC
* *
21285658 TAAGCATACGGAGTTCATTCCTAATC
1 TAAGCATACGGAGTTCATCCCCAATC
21285684 TAAG
1 TAAG
21285688 ATAAAATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAATC
Found at i:21286248 original size:26 final size:26
Alignment explanation
Indices: 21286219--21286271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21286209 GTTGGCTTAG
*
21286219 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
*
21286245 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
21286271 G
1 G
21286272 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:21286700 original size:11 final size:11
Alignment explanation
Indices: 21286684--21286720 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
21286674 CCTGGGGCAC
21286684 CATCATCAGAG
1 CATCATCAGAG
*
21286695 CATCATCGGAG
1 CATCATCAGAG
*
21286706 CATCACCAGAG
1 CATCATCAGAG
21286717 CATC
1 CATC
21286721 GTCGGAGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.16
Consensus pattern (11 bp):
CATCATCAGAG
Found at i:21286715 original size:22 final size:22
Alignment explanation
Indices: 21286684--21286727 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
21286674 CCTGGGGCAC
*
21286684 CATCATCAGAGCATCATCGGAG
1 CATCACCAGAGCATCATCGGAG
*
21286706 CATCACCAGAGCATCGTCGGAG
1 CATCACCAGAGCATCATCGGAG
21286728 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.25, T:0.16
Consensus pattern (22 bp):
CATCACCAGAGCATCATCGGAG
Found at i:21287642 original size:159 final size:157
Alignment explanation
Indices: 21287382--21287834 Score: 480
Period size: 159 Copynumber: 2.8 Consensus size: 157
21287372 GTGGGTTACG
* * * **
21287382 GCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGTTCCCTGGGTTGCGCATTCTGCCTCTCT
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCATACCC-GACTTGCGCATTCTGCCTCT-T
* * * * * * *
21287447 GGTCGACTGAGCGCCCACATGCCCATTTCATCGGTTGGCTTAGGCATAGGGATTTCATTCCATGT
64 CGTCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * ** **
21287512 CTAAGGCTCA-GCCAGACCGAGGGTTGTG
129 CTAAGGATCATACCAGAAAGAGGGTTGCC
** * *
21287540 GCAGTGGGATCGACAGCACGGAGAGGGGGACCGGGCCAATACCCGACTTGCGCATTATGCCTCTT
1 GCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCC-ATACCCGACTTGCGCATTCTGCCTCTT
* * * *
21287605 CAGTCGACTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-
64 C-GTCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
21287669 GTCTAA-GATCATACCAGAAAGAGGGTTGCC
127 GTCTAAGGATCATACCAGAAAGAGGGTTGCC
* * * *
21287699 GCAGCAGGATTGACAGCACGCAGGAGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTT
1 GCAGCAGGATCGACAGCACGCAGG-GGGGACC-GGGCCATACCCGACTTGCGCATTCTGCCTCTT
** * * * *
21287764 CGATCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATG
64 CG-TCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
21287829 TCTAAG
128 TCTAAG
21287835 CATACGGAGT
Statistics
Matches: 241, Mismatches: 44, Indels: 18
0.80 0.15 0.06
Matches are distributed among these distances:
158 30 0.12
159 201 0.83
160 10 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCATACCCGACTTGCGCATTCTGCCTCTTCG
TCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGGATCATACCAGAAAGAGGGTTGCC
Found at i:21287858 original size:26 final size:26
Alignment explanation
Indices: 21287805--21287860 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
21287795 TGGGTTGGCT
*
21287805 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATATC
21287831 TAAGCATACGGAGTTCATTCCCA-ATC
1 TAAGCATACGGAGTTCATT-CCATATC
21287857 TAAG
1 TAAG
21287861 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATATC
Found at i:21288523 original size:159 final size:158
Alignment explanation
Indices: 21288326--21288733 Score: 399
Period size: 159 Copynumber: 2.6 Consensus size: 158
21288316 CTGTCGATTG
* * * * *
21288326 AGCGCCCGCTCGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCAC
* * * * * *
21288391 AGTCGGACCGAGGGTTGTGGTAGCGAGACCGGCAGCACGTAGAGGGGGACCGGGTCAATCCCTGA
66 AGTCGGACCGAGGGTTGTGGTAGC-AGACCGACAACACGCAGAGAGGGACCGGGCCAAACCCTGA
*
21288456 CTTACGCATTATGCCTATTCAACTGGCTC
130 CTTACGCATTATGCCTATCCAACTGGCTC
* * * *
21288485 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCA-GTCTAAG--A
1 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCA
* * ** ** * *
21288547 TCAGACCGAACCGAGGGTTGTGACAGCAGGATTGATAACACGCAGAGAGGGATCGGGCCAAACCC
65 -CAG-TCGGACCGAGGGTTGTGGTAGCA-GACCGACAACACGCAGAGAGGGACCGGGCCAAACCC
* * * * ** *
21288612 TGGCTTTCGCATTCTGCCTCTCCGGCTGGCTG
127 TGACTTACGCATTATGCCTATCCAACTGGCTC
* ** * *
21288644 AGCGCCTGCACGCTCATTTTATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTTTAAGCCAC
1 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCAC
* * *
21288709 TGTCGGATCGAGGGTTATGGTAGCA
66 AGTCGGACCGAGGGTTGTGGTAGCA
21288734 AGACTGGTAG
Statistics
Matches: 195, Mismatches: 47, Indels: 14
0.76 0.18 0.05
Matches are distributed among these distances:
158 6 0.03
159 184 0.94
160 4 0.02
161 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCAC
AGTCGGACCGAGGGTTGTGGTAGCAGACCGACAACACGCAGAGAGGGACCGGGCCAAACCCTGAC
TTACGCATTATGCCTATCCAACTGGCTC
Found at i:21288898 original size:26 final size:26
Alignment explanation
Indices: 21288862--21288914 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21288852 GTTGACTTTG
*
21288862 GCATATGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
*
21288888 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
21288914 G
1 G
21288915 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:21289252 original size:159 final size:159
Alignment explanation
Indices: 21288888--21289392 Score: 370
Period size: 159 Copynumber: 3.2 Consensus size: 159
21288878 CCCAGTCTAA
* * * * * * *
21288888 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGTGACAGCAGGACCGACA
* * * * * * * * * * * ** * * *
21288953 GCAAGCAG-GAGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCTG-TCGGTTGAGCG
66 ACACGAAGAGGGGGATCGGGCCAAACCCCGACTTCCGCATTATGCCTCTCAGGCT-GGCTCAACG
* * * * * **
21289016 GCCGCACGCCCATTTCGTAGGTTGGCTTAG
130 CCCGCACGCTCGTTACGTGGGTTAACTTAG
* * ** * ** * * * * *
21289046 GCATAGGGAGTTCATT-CCATGTTTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGAACCGAGGGTTGTGACAGCAGGACCGAC
* * * * * * * * *
21289110 AGCACGAAGTGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTATTCAGTC-GGCTCAAT
65 AACACGAAGAGGGGGATCGGGCCAAACCCCGACTTCCGCATTATGCCT-CTCAGGCTGGCTCAAC
* *
21289174 GCCCGCACGCTCGTTTCGTGGGTTAACTTAT
129 GCCCGCACGCTCGTTACGTGGGTTAACTTAG
* ** *
21289205 GCATACGGAGTTTATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGTGACAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGTGACAGCAGGACCGACA
* * * * * *
21289270 ACACGTAGAGGGGGATCGGGCCAAACCCTGGCTTCCGCATTCTGCCTCTCCGGCTGGCTGAACGC
66 ACACGAAGAGGGGGATCGGGCCAAACCCCGACTTCCGCATTATGCCTCTCAGGCTGGCTCAACGC
**
21289335 CCGCACGCTCGTTACGTGGGTTGGCTTAG
131 CCGCACGCTCGTTACGTGGGTTAACTTAG
21289364 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
21289393 TTTGAGCCAC
Statistics
Matches: 266, Mismatches: 75, Indels: 11
0.76 0.21 0.03
Matches are distributed among these distances:
157 3 0.01
158 55 0.21
159 203 0.76
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGTGACAGCAGGACCGACA
ACACGAAGAGGGGGATCGGGCCAAACCCCGACTTCCGCATTATGCCTCTCAGGCTGGCTCAACGC
CCGCACGCTCGTTACGTGGGTTAACTTAG
Found at i:21289267 original size:686 final size:674
Alignment explanation
Indices: 21287927--21289381 Score: 2207
Period size: 686 Copynumber: 2.1 Consensus size: 674
21287917 ATGGGTGACT
* * * ** *
21287927 GGGCCAATCCCCGGCTTGT-GCATTCTGCCTCTCCGG-TCGACTGAGTACCCCCACGCTCGTTTC
1 GGGCCAAACCCTGGCTT-TCGCATTCTGCCTCTCCGGCT-GGCTGAGCGCCCGCACGCTCGTTTC
*
21287990 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCCTCTGTCGGATCGAGGGTTATGG
64 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCCACTGTCGGATCGAGGGTTATGG
* *
21288055 CAGCAAGACTGGCAGCGAGATCGGTAGCACGCAAAGGGGGATCAGGCTGATCCCCGACTTATGCA
129 CAGCAAGACTGGCAGCGAGATCGGCAGCACGCAAAGGGGGATCAGGCTGATCCCCGACTTACGCA
* * *
21288120 TTATGCCTCTCCGGTCGGCCTCTCTGGCCGGCAGAGCACCCGCACGCTCGTTTCGTGGGTTGACT
194 TTATGCCTCTCCGGCCGGCCTCTCTGGCCGACAGAGCACCAGCACGCTCGTTTCGTGGGTTGACT
**
21288185 TTGGCATATAGAGTTCATGCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
259 TTGGCATATAGAGTTCATGCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCG
21288250 AACCGAAGGTTGCGACAGCAAGCAGAGGGGATCGAGCCAATCCCTGGCTTGCGCATTCTGCCTCT
324 AACCGAAGGTTGCGACAGCAAGCAGAGGGGATCGAGCCAATCCCTGGCTTGCGCATTCTGCCTCT
* *
21288315 CCTGTCGATTGAGCGCCCGCTCGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
389 CCTGTCGATTGAGCGCCCGCACGCCCATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
* *
21288380 GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGAGACCGGCAGCACGTAGAGGGGGACCGGG
454 GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGAAGAGGGGGACCGGG
* *
21288445 TCAATCCCTGACTTACGCATTATGCCTATTCAACTGGCTCAGTGCCCGCACGCTCGTTTCGTGGG
519 TCAATCCCCGACTTACGCATTATGCCTATTCAACTGGCTCAATGCCCGCACGCTCGTTTCGTGGG
* *
21288510 TTGACTTATGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGCA
584 TTAACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGCA
21288575 GGATTGATAACACGCAGAGAGGGATC
649 GGATTGATAACACGCAGAGAGGGATC
* * *
21288601 GGGCCAAACCCTGGCTTTCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCTGCACGCTCATTTTAT
1 GGGCCAAACCCTGGCTTTCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCAT
* *
21288666 GGGTTGGCTTAGGCATATGGAGTTCATTCCATGTTTAAGCCACTGTCGGATCGAGGGTTATGGTA
66 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCCACTGTCGGATCGAGGGTTATGGCA
* * * * * *
21288731 GCAAGACTGGTAGCGGGATCGGCAGCACGCAGAGGGGGATTAGGCTGATCCCTGACTTGCGCATT
131 GCAAGACTGGCAGCGAGATCGGCAGCACGCAAAGGGGGATCAGGCTGATCCCCGACTTACGCATT
* * * *
21288796 ATGCCTCTTCGGCCGGCCTCTCTGGCCGACTGAGCGCCAGCACGCTCGTTTTGTGGGTTGACTTT
196 ATGCCTCTCCGGCCGGCCTCTCTGGCCGACAGAGCACCAGCACGCTCGTTTCGTGGGTTGACTTT
* *
21288861 GGCATATGGAGTTCATGCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGA
261 GGCATATAGAGTTCATGCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAA
* * *
21288926 TCGAGGGTTGCGACAGTAAGATCGACAGCAAGCAGGAGGGATCGAGCCGATCCCTGGCTTGCGCA
326 CCGAAGGTTGCGAC----AG--C-A-AGC-AG-A-G-GGGATCGAGCCAATCCCTGGCTTGCGCA
* *
21288991 TTCTGCCTCTCCTGTCGGTTGAGCGGCCGCACGCCCATTTCGTAGGTTGGCTTAGGCATAGGGAG
379 TTCTGCCTCTCCTGTCGATTGAGCGCCCGCACGCCCATTTCGTAGGTTGGCTTAGGCATAGGGAG
* * * *
21289056 TTCATTCCATGTTTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGAAGTG
444 TTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGAAGAG
* * * *
21289121 GGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTATTC-AGTCGGCTCAATGCCCGCACGCT
509 GGGGACCGGGTCAATCCCCGACTTACGCATTATGCCTATTCAACT-GGCTCAATGCCCGCACGCT
*
21289185 CGTTTCGTGGGTTAACTTATGCATACGGAGTTTATTCCCAGTCTAAGATC-GAACCGAACCGAGG
573 CGTTTCGTGGGTTAACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCGAGG
* *
21289249 GTTGTGACAGCAGGATTGATAACACGTAGAGGGGGATC
637 GTTGTGACAGCAGGATTGATAACACGCAGAGAGGGATC
* * * *
21289287 GGGCCAAACCCTGGCTTCCGCATTCTGCCTCTCCGGCTGGCTGAACGCCCGCACGCTCGTTACGT
1 GGGCCAAACCCTGGCTTTCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCAT
21289352 GGGTTGGCTTAGGCATACGGAGTTCATTCC
66 GGGTTGGCTTAGGCATACGGAGTTCATTCC
21289382 CAGTCTAAGA
Statistics
Matches: 702, Mismatches: 63, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
673 1 0.00
674 302 0.43
675 1 0.00
678 2 0.00
680 1 0.00
681 1 0.00
682 3 0.00
683 2 0.00
684 1 0.00
685 4 0.01
686 384 0.55
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (674 bp):
GGGCCAAACCCTGGCTTTCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCAT
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCCACTGTCGGATCGAGGGTTATGGCA
GCAAGACTGGCAGCGAGATCGGCAGCACGCAAAGGGGGATCAGGCTGATCCCCGACTTACGCATT
ATGCCTCTCCGGCCGGCCTCTCTGGCCGACAGAGCACCAGCACGCTCGTTTCGTGGGTTGACTTT
GGCATATAGAGTTCATGCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAA
CCGAAGGTTGCGACAGCAAGCAGAGGGGATCGAGCCAATCCCTGGCTTGCGCATTCTGCCTCTCC
TGTCGATTGAGCGCCCGCACGCCCATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGAAGAGGGGGACCGGGTC
AATCCCCGACTTACGCATTATGCCTATTCAACTGGCTCAATGCCCGCACGCTCGTTTCGTGGGTT
AACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGCAGG
ATTGATAACACGCAGAGAGGGATC
Found at i:21291436 original size:26 final size:26
Alignment explanation
Indices: 21291399--21291451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21291389 GTTGACTTAG
*
21291399 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
21291425 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
21291451 G
1 G
21291452 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:21291644 original size:26 final size:26
Alignment explanation
Indices: 21291608--21291660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21291598 GTTGACTTAG
*
21291608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21291634 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21291660 G
1 G
21291661 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21292611 original size:26 final size:26
Alignment explanation
Indices: 21292581--21292633 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21292571 GTTGACTTAG
*
21292581 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
21292607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21292633 G
1 G
21292634 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21292943 original size:26 final size:26
Alignment explanation
Indices: 21292893--21292945 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21292883 GTTGGCTTAG
* *
21292893 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATAGAGTTCATTCCATCTCTAA
21292919 GCATATAGAGTTCATTCCCA-CTCTAA
1 GCATATAGAGTTCATT-CCATCTCTAA
21292945 G
1 G
21292946 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCATCTCTAA
Found at i:21294458 original size:26 final size:26
Alignment explanation
Indices: 21294422--21294474 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21294412 GTTGGCTTAG
**
21294422 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21294448 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21294474 G
1 G
21294475 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21294686 original size:26 final size:26
Alignment explanation
Indices: 21294623--21294689 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
21294613 ACTTAGGCAA
*
21294623 ACAGAGTTCATCCCCAATCTAAGCAT
1 ACAGAGTTCATTCCCAATCTAAGCAT
* * *
21294649 ACGGAGTTCATTTCCAGTCTAAGCAT
1 ACAGAGTTCATTCCCAATCTAAGCAT
21294675 ACAGAGTTCATTCCC
1 ACAGAGTTCATTCCC
21294690 GAACCACAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (26 bp):
ACAGAGTTCATTCCCAATCTAAGCAT
Found at i:21295418 original size:26 final size:26
Alignment explanation
Indices: 21295389--21295439 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21295379 TTGGCTTAGG
21295389 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
21295415 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
21295440 GATCGGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:21296102 original size:26 final size:26
Alignment explanation
Indices: 21296066--21296118 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21296056 GTTGGCTTAG
21296066 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21296092 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21296118 G
1 G
21296119 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21296303 original size:26 final size:26
Alignment explanation
Indices: 21296274--21296326 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21296264 GTTGACTTAG
*
21296274 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21296300 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21296326 G
1 G
21296327 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21297374 original size:26 final size:26
Alignment explanation
Indices: 21297338--21297390 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21297328 GTTGACTTAG
21297338 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCCAA-TCTAA
*
21297364 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21297390 G
1 G
21297391 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21297828 original size:26 final size:26
Alignment explanation
Indices: 21297791--21297843 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21297781 GTTGGCTTAG
21297791 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCAT-TCTAA
*
21297817 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAAAGTTCATTCCCATTCTAA
21297843 G
1 G
21297844 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCATTCTAA
Found at i:21298105 original size:158 final size:156
Alignment explanation
Indices: 21297911--21298318 Score: 408
Period size: 159 Copynumber: 2.6 Consensus size: 156
21297901 TGATCCCCGG
* * * * * *
21297911 CTTGCGCATTCTGCCACTTCGACCTGCTGAGTGCCCGCACGCCCATCTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* * * * ** *
21297976 ATAGGGAGTTTATTCCATGTCTAAGCCCAGCCAGTCTGAGGGTCGTGGCAGTGGGACCAACAGCA
66 ATACGGAGTTCATTCCATGTCTAAGCCCAGCAAAT-TGAGGGTCACGGCAGTAGGACCAACAGCA
21298041 C-ACAGAGGGGGACTAG-GTCGATCCTCAA
130 CGA-AG-GGGGGAC-AGAGTCGATCCTCAA
* * * * * * *
21298069 CTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCATTTCATGGTTTGACTTAGGC
1 CTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* ** * * * * *
21298134 ATACAGAGTTCATTCCCA-GTCTAAGATCGGATCAAATTGAGGGTTACGGTAGTAGGATCGACAG
66 ATACGGAGTTCATT-CCATGTCTAAG--CCCAGCAAATTGAGGGTCACGGCAGTAGGACCAACAG
* * *
21298198 CACGTAAGGGGGGACCGAGTCGGTCCTCGA
128 CACG-AAGGGGGGACAGAGTCGATCCTCAA
* * *
21298228 CTTGAGCATTTTGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGC
1 CTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
*
21298293 ATACGGTGTTCATTCCATGTCTAAGC
66 ATACGGAGTTCATTCCATGTCTAAGC
21298319 ATACAAAGTT
Statistics
Matches: 200, Mismatches: 43, Indels: 15
0.78 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 74 0.37
159 117 0.58
160 7 0.04
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (156 bp):
CTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCAGCAAATTGAGGGTCACGGCAGTAGGACCAACAGCAC
GAAGGGGGGACAGAGTCGATCCTCAA
Found at i:21298501 original size:26 final size:26
Alignment explanation
Indices: 21298472--21298525 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
21298462 TAGGTTGACT
*
21298472 TAGGCATACGGAGTTCATACCCAGTC
1 TAGGCATACAGAGTTCATACCCAGTC
*
21298498 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATACCCAGTC
21298524 TA
1 TA
21298526 AGATTGGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATACCCAGTC
Found at i:21298547 original size:184 final size:185
Alignment explanation
Indices: 21298129--21298682 Score: 555
Period size: 184 Copynumber: 3.0 Consensus size: 185
21298119 TGGTTTGACT
* *
21298129 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAAATTGAGGGTTACGGTAGTAGGATCG
1 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGATTGAGGGTTACGGTAGCAGGATCG
* * * * * *
21298194 ACAGCACGTAAGGGGGGACCGAGTCGGTCCTCGACTTGAGCATTTTGCCTCTCCGACCGGCTGAG
66 ACAACACGTAAGGGGGGACCGAGTAGATCCCCGACTTGAACATTCTGCCTCTCCGACCGGCTGAG
* * * * * *
21298259 TGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTC
131 CGCCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCATGTC
* * * * **
21298314 TAAGCATACAAAGTTCATTCTCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAGGATCG
1 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGATTGAGGGTTACGGTAGCAGGATCG
** * * * *
21298379 GTAACACGT-AGGGTGGACCGAGTAGATCCCCGA-TTTACACATTCTGCCTCTTCGACTGGCTGA
66 ACAACACGTAAGGGGGGACCGAGTAGATCCCCGACTTGA-ACATTCTGCCTCTCCGACCGGCTGA
*
21298442 GCGCCCGCATGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATACCCA-GTC
130 GCGCCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTC
* * ** * *
21298498 TAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGATTGAGGGTTGTGGCATCAGGATCG
1 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGATTGAGGGTTACGGTAGCAGGATCG
* * * * * * * ** *
21298563 GCAGCAC--ACAGGAGGGACTGGGCCA-ATCCCCGACTTGAGCATTCTGCCTCTCCGGTCGACTG
66 ACAACACGTA-AGGGGGGACCGAG-TAGATCCCCGACTTGAACATTCTGCCTCTCCGACCGGCTG
* * * * * * * *
21298625 AGCACCTGCATG-TCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
129 AGCGCCCGCACGCTC-ATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCATGTC
21298682 T
1 T
21298683 CAGCCCTAGC
Statistics
Matches: 301, Mismatches: 60, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
183 8 0.03
184 223 0.74
185 70 0.23
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.26
Consensus pattern (185 bp):
TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGATTGAGGGTTACGGTAGCAGGATCG
ACAACACGTAAGGGGGGACCGAGTAGATCCCCGACTTGAACATTCTGCCTCTCCGACCGGCTGAG
CGCCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCATGTC
Found at i:21300998 original size:552 final size:539
Alignment explanation
Indices: 21299984--21301008 Score: 1258
Period size: 552 Copynumber: 1.9 Consensus size: 539
21299974 TCGGTCCATG
* * *
21299984 GCTTGCGCATTATGCCTCTCCGACTGACTGAGCGCCCACACACTCGTTTCATGGGTTGGCTTCGA
1 GCTTGCGCATTATGCCTCTCCGACTGACTGAGCACCCACACACTCGTTTCATGGCTTGGCTTAGA
* *
21300049 CATACGGAGTTCATTACATGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCAAACCGGACC
66 CATACGGAGTTCATTACATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACC
* * * *
21300114 GAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGACAACACACAAGGGGGATCGGGCTGATCCCC
131 GAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAACACACAAGGGGGACCAGCCTGATCCCC
* * * * **
21300179 GGCTTACGTATTCTGTCTCTCCGGCCGGTTGAGTGCCCGCACATTTGTTTCGTGGGTTGACTTAG
196 GACTTACGTATTCTCTCTCTCCCGCCGGCTGAGTGCCCGCACATTCATTTCGTGGGTTGACTTAG
* * * *
21300244 GCATATAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
261 GCATACAGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * *
21300309 CGAGGGTTACGACAGTAGGATCAGTAGCACGCAGGGGGGACCGAGCCAATCCCCGACTTACGCAT
326 CGAGGGTTACGACAGGAGGATCAGCAGCACGCAGGGGGGACCGAGCCAATCCCAGACTTACGCAT
* ** ** * *
21300374 TCTGCCTCTTCGACCGGCTGAGCTTCCGTACGCCCGTTTCATGGGTTGGCTTAGGCGTAGGGAGT
391 TCTGCCTCTTCGACCGACTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
21300439 TCATTCCATGTCTAAGCCCCAGCCAGACAGAGGGTTGTGGTAGTGGGACTGACAGCACGTAGAGG
456 TCATTCCATGTCTAAGCCCCAGCCAGACAGAGGGTTGTGGTAGTGGGACTGACAGCACGTAGAGG
21300504 GGGACCGGGCCGATCCCCA
521 GGGACCGGGCCGATCCCCA
* * * ** *
21300523 GCTTGCGCATTCTGCCTCTTCGA-TCGGCTGAGCACCCGTACACTCGTTTTATGGCTTGGCTTAG
1 GCTTGCGCATTATGCCTCTCCGACT-GACTGAGCACCCACACACTCGTTTCATGGCTTGGCTTAG
* * ** *
21300587 GCATACGGAGTTCAGTT-CATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATTGGT
65 ACATACGGAGTTCA-TTACATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGA
* * * * *
21300651 CCGAGGGTTGCTGCAGCAGGACCAGCAGCAGGATC-AGTAGCACGCAGGGGGGACCAAGCCT-AT
129 CCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGA-CAACACACAAGGGGGACC-AGCCTGAT
* *
21300714 CCCCGACTTGCGTATTCTACCTCTACGATCAGCCTCTCTGGCTG-GCTGAACACC-CACATGCTC
192 CCCCGACTTACGTATTCT--CTCT-C--TC--CCGC-C-GGCTGAG-TG--C-CCGCACAT--TC
* * *
21300777 ATTTCGTGGGTTGGCTTAGGCATACCGAGTTCATCCCTAGTCTAAGCATAAGGAGTTCATTCCCA
242 ATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCA
* * * *
21300842 GTCTAAGATCAGACCCGATCGAGGGTTGCGGCAGGAGGATC-GACAGCACGCAGGGGGGACCGAG
307 GTCTAAGATCAGACCAGACCGAGGGTTACGACAGGAGGATCAG-CAGCACGCAGGGGGGACCGAG
* * * * *
21300906 TCGATGCCCAG-CTTATGCATTTTGCCTC-TCTGACCGACTGAGCACCCACACGCCCATTTCGTG
371 CCAAT-CCCAGACTTACGCATTCTGCCTCTTC-GACCGACTGAGCACCCACACGCCCATTTCATG
21300969 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
434 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
21301009 ATAGTCGGAC
Statistics
Matches: 405, Mismatches: 59, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
538 2 0.00
539 171 0.42
540 5 0.01
541 3 0.01
542 1 0.00
544 2 0.00
546 2 0.00
547 2 0.00
548 6 0.01
550 6 0.01
551 5 0.01
552 196 0.48
553 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (539 bp):
GCTTGCGCATTATGCCTCTCCGACTGACTGAGCACCCACACACTCGTTTCATGGCTTGGCTTAGA
CATACGGAGTTCATTACATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACC
GAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAACACACAAGGGGGACCAGCCTGATCCCC
GACTTACGTATTCTCTCTCTCCCGCCGGCTGAGTGCCCGCACATTCATTTCGTGGGTTGACTTAG
GCATACAGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTACGACAGGAGGATCAGCAGCACGCAGGGGGGACCGAGCCAATCCCAGACTTACGCAT
TCTGCCTCTTCGACCGACTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
TCATTCCATGTCTAAGCCCCAGCCAGACAGAGGGTTGTGGTAGTGGGACTGACAGCACGTAGAGG
GGGACCGGGCCGATCCCCA
Found at i:21301643 original size:26 final size:26
Alignment explanation
Indices: 21301614--21301666 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21301604 GTTGTCGTAG
21301614 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
21301640 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21301666 G
1 G
21301667 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21308047 original size:26 final size:26
Alignment explanation
Indices: 21308017--21308069 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21308007 GTTGACTTAG
*
21308017 GCATATGCAGTTCATCCCCAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
* * *
21308043 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
21308069 G
1 G
21308070 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATCCCCAGTCTAA
Found at i:21309005 original size:159 final size:158
Alignment explanation
Indices: 21308776--21309214 Score: 467
Period size: 159 Copynumber: 2.8 Consensus size: 158
21308766 TAGCATCGGT
* * * ** ** * * **
21308776 AGCACGCAGGG-GGGACCGGGCTGATCCCCTCCTTGAACATTCTACCTCTTCGGTCGGCTGAGTG
1 AGCACGCAGGGAGGGACCAGGCCGATCACCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
*
21308840 CCCGCACGCCCGTTTCGTGGGTTGGCTTTCGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-T
66 CCCGCACGCCCGTTTCGTGGGTTGGCTTTGGCATAGGGAGTTCATTCCA-GTCTAAGCCCCAGCT
* *
21308904 CGGATCGAGGGTTGTGGCAGCGGGACCAGC
130 -GGACCGAGGGTTATGGCAGCGGGACCAGC
* * *
21308934 AGCACGTAGAGG-GGGACCAGGTCGATC-CTC-GACTTGCGCATTCTGCCTCTCCGGTCGGTTGA
1 AGCACGCAG-GGAGGGACCAGGCCGATCAC-CAG-CTTGCGCATTCTGCCTCTCCGGTCGGCTGA
* *
21308996 GCACCCGCACACCCGTTTCGTGCGTTGG-TTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCC
63 GCACCCGCACGCCCGTTTCGTGGGTTGGCTTT-GGCATAGGGAGTTCATTCCA-GTCTAAGCCCC
21309060 AGCTGGACCGAGGGTTATGGCAGCGGGACCAGC
126 AGCTGGACCGAGGGTTATGGCAGCGGGACCAGC
* * * * * * *
21309093 AGCACGCAGGGAGGGATCGGGCCGATCACCAGCTTGCGCATTTTGCCTTTCCCGCCAGCTGAGCA
1 AGCACGCAGGGAGGGACCAGGCCGATCACCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
** * * * * *
21309158 CTAGCACGCTCGTTTCATGGGTTGGCTTAGGGATACGGAGTTCATTCCCAGTCTAAG
66 CCCGCACGCCCGTTTCGTGGGTTGGCTTTGGCATAGGGAGTTCATT-CCAGTCTAAG
21309215 AGTTTGAGCC
Statistics
Matches: 234, Mismatches: 37, Indels: 19
0.81 0.13 0.07
Matches are distributed among these distances:
158 14 0.06
159 212 0.91
160 8 0.03
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (158 bp):
AGCACGCAGGGAGGGACCAGGCCGATCACCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
CCCGCACGCCCGTTTCGTGGGTTGGCTTTGGCATAGGGAGTTCATTCCAGTCTAAGCCCCAGCTG
GACCGAGGGTTATGGCAGCGGGACCAGC
Found at i:21309930 original size:26 final size:26
Alignment explanation
Indices: 21309885--21309937 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21309875 GTTGACTTAG
* *
21309885 GCATACGGATTTTATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
21309911 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
21309937 G
1 G
21309938 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:21310099 original size:26 final size:26
Alignment explanation
Indices: 21310069--21310121 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21310059 GTTGGCTTAG
*
21310069 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
21310095 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21310121 G
1 G
21310122 ATCGGACCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21310124 original size:184 final size:189
Alignment explanation
Indices: 21309811--21310281 Score: 533
Period size: 184 Copynumber: 2.5 Consensus size: 189
21309801 TACCACCCAT
* * * * * * *
21309811 TCGATCCCCGACTTGCGTATCCTGCCTCTCTGGTCGGCTGAGCGTCTGCACGCTCGTTTCGTGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * * * *
21309876 TTGACTTAGGCATACGGATTTTA-TCCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
66 TTGACTTAGGCATACGGAGTTCATTCCATAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * * * *
21309940 CGGACCGGACCGAGGGTT-GC-A-A-TAGCAGGATCGGTAGAACATAGGGGGGACCGTG
131 CGGACCGAACCAAGGGTTAGCGACAGCAGCAGGATCGGCAGAACACAGGGGGGACCGGG
* * *
21309995 TCGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
*
21310060 TTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
66 TTGACTTAGGCATACGGAGTTCATTCCATAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* * *
21310124 CGGACCTAACCAAGGGTTACGGCAGCAGGACCAGCAGCAGGATCGGCAGCACGCAGGGGGGACCG
131 CGGACCGAACCAAGGGTT-----AGC--GA-CAGCAGCAGGATCGGCAGAACACAGGGGGGACCG
21310189 GG
188 GG
* * * * *
21310191 TTGAT-CCCTAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACACTTGTTTCATGG
1 TCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGG
*
21310255 GTTGACTTAGGCATACGAAGTTCATTC
65 GTTGACTTAGGCATACGGAGTTCATTC
21310282 TTATTCTAAG
Statistics
Matches: 238, Mismatches: 35, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
184 123 0.52
185 4 0.02
190 2 0.01
193 1 0.00
195 5 0.02
196 103 0.43
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (189 bp):
TCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACGGAGTTCATTCCATAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
CGGACCGAACCAAGGGTTAGCGACAGCAGCAGGATCGGCAGAACACAGGGGGGACCGGG
Found at i:21310486 original size:157 final size:159
Alignment explanation
Indices: 21310247--21310608 Score: 354
Period size: 157 Copynumber: 2.3 Consensus size: 159
21310237 CGCACACTTG
* * * * ** * * *
21310247 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCTTAT-TCTAAG-ATCAGACTAAACTAAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCCAG-CCAGACTGAGGG
* ** * *
21310310 TTACGACAGCAGGATCGACAGCACGCAG-GGGGGACCCAACCGATCCCCAACTTACGTATTCTAC
64 TTACGACAGCAGGACCGACAGCACAAAGAGGGAGACCCAACAGATCCCCAACTTACGTATTCTAC
**
21310374 CTCTCCAACCGGCTGAGCACC-GCATGCCCA
129 CTCTCCAACCGGCTGAGCACCTGCACACCCA
* *
21310404 TTTCGTGGGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTT
* * * * *** * * *
21310469 ATGGCAGTAGGACCGACAGCACAAAGAGGGAGATCGGGCAGATCCCCAGCTTGCGTATTCTGCCT
66 ACGACAGCAGGACCGACAGCACAAAGAGGGAGACCCAACAGATCCCCAACTTACGTATTCTACCT
**** ***
21310534 CTCCGGTTGGCTGAGCACCTGCACACTTG
131 CTCCAACCGGCTGAGCACCTGCACACCCA
*
21310563 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
21310609 ATACAGAGTT
Statistics
Matches: 163, Mismatches: 38, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
156 2 0.01
157 67 0.41
158 47 0.29
159 47 0.29
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTT
ACGACAGCAGGACCGACAGCACAAAGAGGGAGACCCAACAGATCCCCAACTTACGTATTCTACCT
CTCCAACCGGCTGAGCACCTGCACACCCA
Found at i:21310617 original size:26 final size:26
Alignment explanation
Indices: 21310581--21310633 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21310571 GTTGGCTTAG
*
21310581 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21310607 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21310633 G
1 G
21310634 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21311684 original size:159 final size:158
Alignment explanation
Indices: 21311366--21311816 Score: 401
Period size: 159 Copynumber: 2.8 Consensus size: 158
21311356 GATCGGACTG
** * * ** *
21311366 GACCGAGGGTTACGACAGTAGGATCGACAGCATGCAAA-GGGGACCGGGCTGATCTCCGGCTTAC
1 GACCGAGGGTTACGGTAGCAGGACCGACAGCACACAAAGGGGGACCGGGCTGATCCCCGGCTTAC
* * * * * * * * *
21311430 GCATTCTACCTCTCCGACCGACTAAGCGCCCGCACACCCGTTACGTGGGTTGGCCTAGGCATAGG
66 GCATTATACCTCTTCGA-CGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
21311495 GAG-TTAATACCATGCCTAAACCATAGCCA
130 GAGTTTAATACCAT-CCTAAACCAGAGCCA
* ** * *
21311524 GATCGAGGGTTTTGGTAGCGGGACCGACAGCACACAAAGGGGGACCGGGCTGATCCCCGGCTTGC
1 GACCGAGGGTTACGGTAGCAGGACCGACAGCACACAAAGGGGGACCGGGCTGATCCCCGGCTTAC
* * * *
21311589 GTATTATGCCTCTTCGACTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
66 GCATTATACCTCTTCGAC-GGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
21311654 GAGTTTATTCCCAAT-CTAAGATCAGA-CCA
130 GAGTTTAATACC-ATCCTAA-ACCAGAGCCA
** * ** * * * * *
21311683 GACCGAGGGTTACGGTAGCAGGATTGATAG--CACGTAGGGTGAACTGTGCTGATCCTCGACTTA
1 GACCGAGGGTTACGGTAGCAGGACCGACAGCACACAAAGGG-GGACCGGGCTGATCCCCGGCTTA
* * **
21311746 CGCATTTTACCTCTCTCGTCGGCTGGGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
65 CGCATTATACCTCT-TCGACGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
21311811 GAAGTT
129 GGAGTT
21311817 CACTCCATGT
Statistics
Matches: 234, Mismatches: 52, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 7 0.03
158 104 0.44
159 111 0.47
160 10 0.04
161 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GACCGAGGGTTACGGTAGCAGGACCGACAGCACACAAAGGGGGACCGGGCTGATCCCCGGCTTAC
GCATTATACCTCTTCGACGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTTAATACCATCCTAAACCAGAGCCA
Found at i:21311842 original size:26 final size:26
Alignment explanation
Indices: 21311805--21311857 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21311795 GTTGGCTTAG
21311805 GCATACGAAGTTCACT-CCATGTCTAA
1 GCATACGAAGTTCACTCCCA-GTCTAA
* *
21311831 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
21311857 G
1 G
21311858 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:21313309 original size:159 final size:158
Alignment explanation
Indices: 21313032--21313449 Score: 563
Period size: 159 Copynumber: 2.6 Consensus size: 158
21313022 GGGATCGGAT
* * * *
21313032 CGATCCCCGGCTTACGCATTCTGCCTCTCC-AGTCGACTGAACGCCCGCACGCTCGTTTCGTGGG
1 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
21313096 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCAGGCTGAGGGTTGTGGCAGCG
65 TTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAACCAGGATAAGGGTTGTGGCAGCA
* *
21313161 GGACCGGCAGCATGCAGAGGGGGACCGGGC
129 GGACCAGCAACATGCAGAGGGGGACCGGGC
* * * *
21313191 CGATCCTTGGCTTGCGTATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
1 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
21313256 TGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACC-GGATCAAGGGTTGTGGTAGCA
66 TGGCTTAGGCATAGG-AGTTCATTCCATGTCTAAGCCCCAACCAGGAT-AAGGGTTGTGGCAGCA
**
21313320 GGACCAGCAACATGTTGAGGGGGACCGGGC
129 GGACCAGCAACATGCAGAGGGGGACCGGGC
* * * * * *
21313350 TGATTCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTTGTTTCGTGGGT
1 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
21313415 TGGCTTAGGCATACGGAGTTCATTCCATGTC-AAGC
66 TGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGC
21313450 ATATGGAGTT
Statistics
Matches: 228, Mismatches: 27, Indels: 9
0.86 0.10 0.03
Matches are distributed among these distances:
158 9 0.04
159 216 0.95
160 3 0.01
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
CGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAACCAGGATAAGGGTTGTGGCAGCAGG
ACCAGCAACATGCAGAGGGGGACCGGGC
Found at i:21314172 original size:26 final size:26
Alignment explanation
Indices: 21314142--21314197 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
21314132 TGGGTTGACT
*
21314142 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
21314168 TAAGCATACAGAGTTTATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
21314194 TAAG
1 TAAG
21314198 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:21314290 original size:22 final size:22
Alignment explanation
Indices: 21314265--21314307 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
21314255 CCAATCCTCG
21314265 GCTTGCGCATTTTGCCTCTCCA
1 GCTTGCGCATTTTGCCTCTCCA
21314287 GCTTGCGCATTTTGCCTCTCC
1 GCTTGCGCATTTTGCCTCTCC
21314308 GGCCAGTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.07, C:0.37, G:0.19, T:0.37
Consensus pattern (22 bp):
GCTTGCGCATTTTGCCTCTCCA
Found at i:21314669 original size:158 final size:159
Alignment explanation
Indices: 21314331--21314694 Score: 448
Period size: 158 Copynumber: 2.3 Consensus size: 159
21314321 CCCGCACACC
21314331 CATTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGA
1 CATTTCGTGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGA
* * * * * *
21314395 GTTGTGGCAGCGGGATCGGTAGCACGTAGAGGGGGATCGAGTTGATCCTCGGCTTGCGCATTATG
65 GTTGTGGCAGCAGGATCGATAGCACGTAGAGAGGAATCGAGTCGATCCTCGGCTTACGCATTATG
* *
21314460 CCTCTCCGGTCAACTCAAAACCTGAACGCT
130 CCTCTCCGATCAACTCAAAACCCGAACGCT
* ** * * *
21314490 CATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGGATCGAG
1 CATTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATT-CCATGTCTAAGCCCCAGCT-GGACCGAG
* * * *
21314553 GGTTGTGGTAGCAGGATCGATAGCACGTAGA-AGGAATCGGGTCGATCCTCGGCTTACGCATTCT
64 AGTTGTGGCAGCAGGATCGATAGCACGTAGAGAGGAATCGAGTCGATCCTCGGCTTACGCATTAT
* * * *
21314617 GCCTCTCCGATCGACTGAACACCCGCACGCT
129 GCCTCTCCGATCAACTCAAAACCCGAACGCT
* * *
21314648 CGTTTCGGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CATTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAG
21314695 TATACAGAGT
Statistics
Matches: 175, Mismatches: 26, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
157 3 0.02
158 95 0.54
159 74 0.42
160 3 0.02
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (159 bp):
CATTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGAG
TTGTGGCAGCAGGATCGATAGCACGTAGAGAGGAATCGAGTCGATCCTCGGCTTACGCATTATGC
CTCTCCGATCAACTCAAAACCCGAACGCT
Found at i:21314706 original size:26 final size:26
Alignment explanation
Indices: 21314670--21314720 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21314660 TGGCTTAGGC
*
21314670 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
21314696 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
21314721 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:21315243 original size:26 final size:26
Alignment explanation
Indices: 21315207--21315259 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21315197 GTTGGCTTAG
21315207 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21315233 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21315259 G
1 G
21315260 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21317214 original size:26 final size:26
Alignment explanation
Indices: 21317184--21317236 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21317174 GTTGACTTAG
*
21317184 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
21317210 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21317236 G
1 G
21317237 ATTGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21320834 original size:26 final size:26
Alignment explanation
Indices: 21320798--21320850 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21320788 GTTGACTTAG
21320798 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
*
21320824 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
21320850 G
1 G
21320851 ATCAAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:21321178 original size:26 final size:26
Alignment explanation
Indices: 21321142--21321193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21321132 TTGGCTTAGA
21321142 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
*
21321168 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
21321194 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:21321404 original size:26 final size:26
Alignment explanation
Indices: 21321344--21321405 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
21321334 TAGGCAAACA
*
21321344 GAGTTCATCCCCAATCTAAGCATACG
1 GAGTTCATTCCCAATCTAAGCATACG
*
21321370 GAGTTCATTCCCAGTCTAAGCATACG
1 GAGTTCATTCCCAATCTAAGCATACG
21321396 GAGTTCATTC
1 GAGTTCATTC
21321406 ACGAACCATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GAGTTCATTCCCAATCTAAGCATACG
Found at i:21321699 original size:26 final size:26
Alignment explanation
Indices: 21321647--21321699 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21321637 GTTGACTTAG
* **
21321647 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGGCTAA
*
21321673 GCATACGAAGTTCATTCCCAGGCTAA
1 GCATACGAAGTTCATCCCCAGGCTAA
21321699 G
1 G
21321700 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGGCTAA
Found at i:21322137 original size:26 final size:26
Alignment explanation
Indices: 21322108--21322160 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21322098 GTTGGCTTAG
21322108 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
21322134 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21322160 G
1 G
21322161 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21323048 original size:26 final size:26
Alignment explanation
Indices: 21323012--21323064 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21323002 GTTGACTTAG
21323012 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21323038 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21323064 G
1 G
21323065 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21323390 original size:26 final size:26
Alignment explanation
Indices: 21323354--21323406 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21323344 GTTGGCTTAG
*
21323354 GCATATGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
21323380 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
21323406 G
1 G
21323407 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:21324113 original size:26 final size:26
Alignment explanation
Indices: 21324077--21324129 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21324067 GTTGACTTAG
*
21324077 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
21324103 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21324129 G
1 G
21324130 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21325057 original size:159 final size:156
Alignment explanation
Indices: 21324556--21325058 Score: 492
Period size: 159 Copynumber: 3.2 Consensus size: 156
21324546 CCATGTCTAA
* * *
21324556 GCATACGGAGTTCATTCCTAT-TCTAAGATCAGACCAGACTGAAGGTTACGGCAGTAGGATCAGT
1 GCATACGGAGTTCATTCC-ATGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCAGT
* * * * * * * *
21324620 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCACTTCGACTGGCTGAGTGC
64 AGCACGCAGGGGGGA-CGAGTCGATCCTCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCGC
* *
21324685 CCGCACGCCCGTCTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
21324714 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGACCAGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCAGT
* * * * * * *
21324778 AGCACGCAGAGAGGGACTAGGCCAATCCTCAACTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
64 AGCACGCAG-GGGGGACGA-GTCGATCCTCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCG
* * * *
21324843 CCCGAACGCTCGTTTCATGGTTTGACTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * **
21324873 GCATACAGAGTTCATTCCCA-ATCTAAGATCAGATCAAATCGAGGGTTGCGATAGCAGGATC-GA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCAG-
* * * *
21324936 TAGCACGCAAGGGGGGATCGAGTCGGTCCTCGACCTAAGCATTTTGCCTCTCCGACCGGCTGAGC
63 TAGCACGC-AGGGGGGA-CGAGTCGATCCTCGACTTACGCATTATGCCTCTCCGACCGGCTGAGC
21325001 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
21325032 GCATACGGTGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
21325059 CATACAAAGT
Statistics
Matches: 271, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 62 0.23
159 200 0.74
160 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCAGGATCAGTAG
CACGCAGGGGGGACGAGTCGATCCTCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21325140 original size:502 final size:502
Alignment explanation
Indices: 21324181--21325182 Score: 1289
Period size: 502 Copynumber: 2.0 Consensus size: 502
21324171 TCGGCTGACC
* *
21324181 GCCCACACGCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
1 GCCCACACGCACGTCTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
** * * * *
21324246 TGGAACGAGGGTAGTGGCAGCGGGACCGGCAGCACCTAGAGGGGGACTAGGCCGATCCCTGACTT
66 CAGAACGAGGGTAGTGGCAGCGGGACCAGCAGCACCTAGAGAGGGACTAGGCCAATCCCTAACTT
* * * *
21324311 GTGCATTATGCCTCTCCAACCAGCTCAGTGCCTGAACGCTCGTTTCTTGGGTTGACTTAGGCATA
131 GCGCATTATGCCTCTCCAACCAGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATA
* * ** ** *
21324376 CGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAACGATTGTCGCAACAGGATCGACAACATG
196 CAGAGTTCATTCCCAATCTAAGATCAGACCAAACCAACGATTGTCGCAACAGGATCGACAACACG
* * ** * * *
21324441 CAGGAGGGGATCAGGTCGGTCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGTA
261 CAGGAGGGGATCAGGTCGGTCCCGAGCCTAAGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCA
* **
21324506 CGCTCGTTTCGTGGGTTGGCTTAGGTATACAAAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
326 CGCTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACAAAGTTCAT
* * * * * *
21324571 TCCTATTCTAAGATCAGACCAGACTGAAGGTTACGGCAGTAGGATCAGTAGCACGCAGGGGGGAC
391 TCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGCAAGATCAGTAACACGCAGGGGGGAC
* * * *
21324636 CGGGTCGATCCCCGGCTTACGCATTCTGCCACTTCGACTGGCTGAGT
456 CGGATAGATCCCCGACTTACACATTCTGCCACTTCGACTGGCTGAGT
* *
21324683 GCCCGCACGCCCGTCTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
1 GCCCACACGCACGTCTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* *
21324748 CAGACCGAGGGTTGTGGCAGCGGGACCAGCAGCACGC-AGAGAGGGACTAGGCCAAT-CCTCAAC
66 CAGAACGAGGGTAGTGGCAGCGGGACCAGCAGCAC-CTAGAGAGGGACTAGGCCAATCCCT-AAC
* * *
21324811 TTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCGTTTCATGGTTTGACTTAGGCA
129 TTGCGCATTATGCCTCTCCAACCAGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCA
* * * * * * *
21324876 TACAGAGTTCATTCCCAATCTAAGATCAGATCAAATCGAGGGTTG-CG-ATAGCAGGATCGATAG
194 TACAGAGTTCATTCCCAATCTAAGATCAGACCAAACCAACGATTGTCGCA-A-CAGGATCGACAA
*
21324939 CACGCAAGG-GGGGATC-GAGTCGGTCCTCGA-CCTAAGCATTTTGCCTCTCCGACCGGCTGAGC
257 CACGC-AGGAGGGGATCAG-GTCGGTCC-CGAGCCTAAGCATTCTGCCTCTCCGACCGGCTGAGC
***
21325001 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGCATACAA
319 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACAA
* * * * * *
21325066 AGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGTAGCAAGATCGGTAACACGTAG
384 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGCAAGATCAGTAACACGCAG
* * * *
21325131 GGTGGACCGGATAGATCCCCGACTTGCACATTCTGCCTCTTTGACTGGCTGA
449 GGGGGACCGGATAGATCCCCGACTTACACATTCTGCCACTTCGACTGGCTGA
21325183 ACACCCACAT
Statistics
Matches: 426, Mismatches: 67, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
500 1 0.00
501 7 0.02
502 412 0.97
503 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (502 bp):
GCCCACACGCACGTCTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
CAGAACGAGGGTAGTGGCAGCGGGACCAGCAGCACCTAGAGAGGGACTAGGCCAATCCCTAACTT
GCGCATTATGCCTCTCCAACCAGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATA
CAGAGTTCATTCCCAATCTAAGATCAGACCAAACCAACGATTGTCGCAACAGGATCGACAACACG
CAGGAGGGGATCAGGTCGGTCCCGAGCCTAAGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACAAAGTTCAT
TCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGCAAGATCAGTAACACGCAGGGGGGAC
CGGATAGATCCCCGACTTACACATTCTGCCACTTCGACTGGCTGAGT
Found at i:21325249 original size:26 final size:26
Alignment explanation
Indices: 21325213--21325266 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
21325203 TAGGTTGACT
21325213 TAGGCATACGAAGTTCATCCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
*
21325239 TAGGCATACGAAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
21325265 TA
1 TA
21325267 AGATTGGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATCCCCAGTC
Found at i:21325335 original size:184 final size:184
Alignment explanation
Indices: 21324873--21325354 Score: 400
Period size: 184 Copynumber: 2.6 Consensus size: 184
21324863 TTTGACTTAG
* * * * ** * *
21324873 GCATACAGAGTTCATTCCCAATCTAAGATCAGA-TCAAATCGAGGGTTGCGATAGCAGGATCGAT
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCAAGATCGAC
* * * * * * * * * * ** * *
21324937 AGCACGCAAGGGGGGATCGAGTC-GGTCCTCGACCTAAGCATTTTGCCTCTCCGACCGGCTGAGC
65 AACACG-TAGGGGGGACCG-GACAGATCCCCGACTTGAGCATTCTACCTCTTTGACTGGCTGAAC
* * * * * * ** *
21325001 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAA
128 ACCCACATGCTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAA
* **
21325058 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGTAGCAAGATCGGTA
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAAGATCGACA
* * *
21325123 ACACGTAGGGTGGACCGGATAGATCCCCGACTTGCA-CATTCTGCCTCTTTGACTGGCTGAACAC
66 ACACGTAGGGGGGACCGGACAGATCCCCGACTTG-AGCATTCTACCTCTTTGACTGGCTGAACAC
*
21325187 CCACATGCTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAG
130 CCACATGCTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCAT-CCCATGTCTAA
* ** * ** * * *
21325242 GCATACGAAGTTCATTCCCAGTCTAAGATTGGA-TCGGATTGAGGGTTGTGGCATCAGGATCGAC
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCAAGATCGAC
* * * *
21325306 AGCACGTAGGGGGGACTGGGCCA-ATCCCCGGCTTGAGCATTCTACCTCT
65 AACACGTAGGGGGGAC-CGGACAGATCCCCGACTTGAGCATTCTACCTCT
21325355 CCGGTCGGCT
Statistics
Matches: 239, Mismatches: 51, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
183 3 0.01
184 168 0.70
185 67 0.28
186 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
GCATACAAAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAAGATCGACA
ACACGTAGGGGGGACCGGACAGATCCCCGACTTGAGCATTCTACCTCTTTGACTGGCTGAACACC
CACATGCTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAA
Found at i:21326670 original size:158 final size:158
Alignment explanation
Indices: 21326294--21326798 Score: 377
Period size: 158 Copynumber: 3.2 Consensus size: 158
21326284 CCTAGTCTAA
* * * * * *
21326294 GCATACAGAGTTCATTCCCATTCTAAGAT-TGAAC-CAGACCGAGGGTTACGACAGTAGGATCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGA-ACCGAGGGTTACGGCAGTAGGATCCG
* ** * * *
21326357 TAGCACGTAGAGGGGACTGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCTGCCCGGTTGAGCA
64 CAGCACACAGAGGGGACTGGGTCGATCCTCGGCTTACGCATTATGCCTCTCTGCCAGCTTGAGCA
**
21326422 CCCGCACAATCATTTCATGGGTTTGCTTAG
129 CCCGCACAATCATTTCATGGGTTAACTTAG
* ** * ** ***
21326452 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTTG-ATCGAGGGTTGTGGCAACGGGATCC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGAC-TGAACCGAGGGTTACGGCAGTAGGATCC
* *
21326514 GCA-CACACAGAGGAGGA-TCGGGTCGATCCTCGGCTTACGCATTATTCCTC-CTTGGTCAGCTT
63 GCAGCACACAGAGG-GGACT-GGGTCGATCCTCGGCTTACGCATTATGCCTCTC-T-GCCAGCTT
* ** *
21326576 -AGCACCCGTACGCTCGTTTCATGGGTTAACTTAG
124 GAGCACCCGCACAATCATTTCATGGGTTAACTTAG
* **
21326610 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGGTAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGGCAGTAGGATCCGCA
** * * * * *
21326675 GCATGCAG-GAGGGACCGGGTCGGTCCAT-GGCTTACGCATTATGCCTCTCCGACTGAC-TGAGC
66 GCACACAGAG-GGGACTGGGTCGATCC-TCGGCTTACGCATTATGCCTCTCTGCCAG-CTTGAGC
* * ** ** *
21326737 GCCCACACGCTCATTTCATGGGTTGGCTTCG
128 ACCCGCACAATCATTTCATGGGTTAACTTAG
** *
21326768 GCATACGGAGTTCATTCTTAGTCTATGATCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA
21326799 AACCAGATCG
Statistics
Matches: 269, Mismatches: 59, Indels: 38
0.73 0.16 0.10
Matches are distributed among these distances:
157 22 0.08
158 230 0.86
159 16 0.06
160 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGGCAGTAGGATCCGCA
GCACACAGAGGGGACTGGGTCGATCCTCGGCTTACGCATTATGCCTCTCTGCCAGCTTGAGCACC
CGCACAATCATTTCATGGGTTAACTTAG
Found at i:21326974 original size:26 final size:26
Alignment explanation
Indices: 21326938--21326990 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21326928 GTTGACTTAG
*
21326938 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21326964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21326990 G
1 G
21326991 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21332591 original size:27 final size:27
Alignment explanation
Indices: 21332559--21332614 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
21332549 TGGTTGACTT
21332559 AGGCATACGCAGTTCATCCCCAGTCTA
1 AGGCATACGCAGTTCATCCCCAGTCTA
* * *
21332586 AGGCATACGGAGTTCATTCTCAGTCTA
1 AGGCATACGCAGTTCATCCCCAGTCTA
21332613 AG
1 AG
21332615 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (27 bp):
AGGCATACGCAGTTCATCCCCAGTCTA
Found at i:21333254 original size:26 final size:26
Alignment explanation
Indices: 21333225--21333277 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21333215 GTTGACTTAG
*
21333225 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
21333251 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21333277 G
1 G
21333278 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Done.