Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 114 of 125
Found at i:21334554 original size:158 final size:157
Alignment explanation
Indices: 21334336--21334670 Score: 356
Period size: 158 Copynumber: 2.1 Consensus size: 157
21334326 AAGCATACAA
* * ** *
21334336 AGTTCATTTCGAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCAAGATCGGTAGCACACAT
1 AGTTCA-TTCCAGTCTAAGATCGGACCGGACCGAGGGTTACGAAAGCAAGATCGACAGCACACAG
* * * * *
21334401 GAGGGACC-GAGCTGAT-TCTCGGCTTGCGCATTCTGCCTCTT-TGG-CTGGTTGATCGCCCGCA
65 GAGGGACCGGATC-GATCCCT-GACTTGCGCATTCTGCCT-TTCCGGTC-GGTTGAGCGCCCGCA
* * *
21334462 C-ATCCGTTTCGTGGGTTGGCTTAGGCATACGG
126 CGCT-CGTTTCATGGGTTGGCTTAGACATACGG
* ** * * **
21334494 AGTTCATTCCCAGTCTAAGATCGGATCGGATGGAGGGTTACGAAAGTAAGATTGACAGCACGTAG
1 AGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTACGAAAGCAAGATCGACAGCACACAG
* * *
21334559 GGGGGATCGGATCGATCCCTGACTTGCGCATTCTGCCTTTCCGGTCGGTTGAGCGGCCGCACGCT
65 GAGGGACCGGATCGATCCCTGACTTGCGCATTCTGCCTTTCCGGTCGGTTGAGCGCCCGCACGCT
21334624 CGTTTCATGGGTTGGCTTAGACATACGG
130 CGTTTCATGGGTTGGCTTAGACATACGG
21334652 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCA-GTCTAAG
21334671 CATACAGAGT
Statistics
Matches: 147, Mismatches: 23, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
157 7 0.05
158 133 0.90
159 7 0.05
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (157 bp):
AGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTACGAAAGCAAGATCGACAGCACACAGG
AGGGACCGGATCGATCCCTGACTTGCGCATTCTGCCTTTCCGGTCGGTTGAGCGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGACATACGG
Found at i:21334675 original size:26 final size:26
Alignment explanation
Indices: 21334645--21334696 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21334635 TTGGCTTAGA
*
21334645 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACAGAGTTCATTCCTA-GTCTAAG
21334671 CATACAGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATTCCTAGTCTAAG
21334697 ATCGGACTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCTAGTCTAAG
Found at i:21335042 original size:158 final size:156
Alignment explanation
Indices: 21334734--21335184 Score: 478
Period size: 158 Copynumber: 2.8 Consensus size: 156
21334724 TAGGACCAGT
** * * *
21334734 AGCAGGATCGACAGCACATAAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTTTACCTCTCTG
1 AGCAGGATCGACAGCAC-GCAGGGGGGATCGGGTCGAT-CCCGGCTTGCGCATTTTACCTCTCCG
* * *
21334799 GCCGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GT
64 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATT-CCATGT
**
21334863 CTAAGATCAGATCGGACCGAAGGTTGA-GGC
127 CTAAGCCCAGATCGGACCGAAGGTT-ATGGC
* *
21334893 AGCAGGATCGACAGCACGCAGGGGGGATCGTGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGG
1 AGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCC-CGGCTTGCGCATTTTACCTCTCCGG
* * * * *
21334958 TCGGCTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTAT
65 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCT
* * *
21335023 AAGCCCTAGCT-GGATCGAAGGTTATGGT
129 AAGCCC-AGATCGGACCGAAGGTTATGGC
* * * * * *
21335051 AGCGGGA-CCAGCAGCACGCAGGGAGGGATCGGGCCGATCCCTAGCTTGCGTATTTTACCTTTCC
1 AGCAGGATCGA-CAGCACGCAGGG-GGGATCGGGTCGATCCC-GGCTTGCGCATTTTACCTCTCC
* * * * * * *
21335115 AGCCGGCTAAGCGCCAGCACGCTCGTTTCATAGGTTGGCTTAGGGATACGAGTTCATTCCATGTC
63 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTC
21335180 TAAGC
128 TAAGC
21335185 ATACGGAGTT
Statistics
Matches: 244, Mismatches: 41, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
157 8 0.03
158 146 0.60
159 90 0.37
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
AGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCGGCTTGCGCATTTTACCTCTCCGGC
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAA
GCCCAGATCGGACCGAAGGTTATGGC
Found at i:21335193 original size:26 final size:25
Alignment explanation
Indices: 21335160--21335209 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
21335150 TGGCTTAGGG
21335160 ATACGAGTTCATT-CCATGTCTAAGC
1 ATACGAGTTCATTCCCA-GTCTAAGC
21335185 ATACGGAGTTCATTCCCAGTCTAAG
1 ATAC-GAGTTCATTCCCAGTCTAAG
21335210 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 4 0.17
26 16 0.70
27 3 0.13
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (25 bp):
ATACGAGTTCATTCCCAGTCTAAGC
Found at i:21335910 original size:26 final size:26
Alignment explanation
Indices: 21335881--21335931 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21335871 TGACTTAGGC
*
21335881 ATACAGATTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
*
21335907 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
21335932 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:21336092 original size:26 final size:26
Alignment explanation
Indices: 21336062--21336114 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21336052 GTTGGCTTAG
*
21336062 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21336088 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21336114 G
1 G
21336115 ATCAGACCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21336117 original size:183 final size:185
Alignment explanation
Indices: 21335806--21336274 Score: 521
Period size: 183 Copynumber: 2.5 Consensus size: 185
21335796 ACCACCCATT
* * * * * * *
21335806 CGATCCCCGACTTGCGCATCCTGTCTCTCTGGTCGGCTGAACGTCTGCACGCTCGTTTCGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
21335871 TGACTTAGGCATACAGATTTCATCCCCAGTCTAAGTATACAGAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * *
21335936 GACCGGATCGAGGGTT-G-C-GTAGCAGGATCGACAGAATGCAGGGGGGACCGTGT
130 GACCGAATCGAGGGTTAGACAGTAGCAGGATCGACAGAACGCAGGGGGGACCGAGC
* * * *
21335989 CGGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGATTGAGCACCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
21336054 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * ** *
21336119 GACCTAATTGAGGGTTACAGCAGCAGGACCAGTAGCAGGATCGGTAGCACGCAGGGGGGACCGAG
130 GACCGAATCGAGGGTT--------A-GA-CAGTAGCAGGATCGACAGAACGCAGGGGGGACCGAG
21336184 C
185 C
* * * *
21336185 CGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
21336250 TGACTTAGGCATATGAAGTTCATTC
66 TGACTTAGGCATACGGAGTTCATTC
21336275 TTATTCTAAG
Statistics
Matches: 235, Mismatches: 37, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
182 3 0.01
183 122 0.52
193 1 0.00
195 1 0.00
196 108 0.46
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.25
Consensus pattern (185 bp):
CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
ACCGAATCGAGGGTTAGACAGTAGCAGGATCGACAGAACGCAGGGGGGACCGAGC
Found at i:21336441 original size:158 final size:158
Alignment explanation
Indices: 21336152--21336442 Score: 361
Period size: 158 Copynumber: 1.8 Consensus size: 158
21336142 CAGGACCAGT
** *** * * **
21336152 AGCAGGATCGGTAGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGG
1 AGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAACTTGCGCATTCTACCTCTCCAA
* * * * * *
21336217 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCTTATTCT
66 CCGACTAAGCACCCGCACACCCGTTTCGTGGGTTGACTTAGGCATAGGAAGTTCATTCTCATTCT
21336282 AAGATCAGACTAAACTGAGGGTTGCGAC
131 AAGATCAGACTAAACTGAGGGTTGCGAC
* * *
21336310 AGCAGGATCGACAGCGCGTAGGGGGGACCGTGCCGATCCCCAACTTGCGCATTCTACCTCTCCAA
1 AGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAACTTGCGCATTCTACCTCTCCAA
* * *
21336375 CC-AGCTAAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGGATAGGGAGTTCATTC-CATGT
66 CCGA-CTAAGCACCCGCACACCCGTTTCGTGGGTTGACTTAGGCATAGGAAGTTCATTCTCAT-T
21336438 CTAAG
129 CTAAG
21336443 CCCCAACCAG
Statistics
Matches: 110, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.03
158 107 0.97
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAACTTGCGCATTCTACCTCTCCAA
CCGACTAAGCACCCGCACACCCGTTTCGTGGGTTGACTTAGGCATAGGAAGTTCATTCTCATTCT
AAGATCAGACTAAACTGAGGGTTGCGAC
Found at i:21336611 original size:26 final size:26
Alignment explanation
Indices: 21336575--21336627 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21336565 GTTGGCTTAG
21336575 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21336601 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21336627 G
1 G
21336628 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21337334 original size:26 final size:26
Alignment explanation
Indices: 21337298--21337349 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21337288 TTGACTTCGA
*
21337298 CATACGAAGTTCAGCCCCAGTCTAAG
1 CATACAAAGTTCAGCCCCAGTCTAAG
**
21337324 CATACAAAGTTCATTCCCAGTCTAAG
1 CATACAAAGTTCAGCCCCAGTCTAAG
21337350 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (26 bp):
CATACAAAGTTCAGCCCCAGTCTAAG
Found at i:21338939 original size:26 final size:26
Alignment explanation
Indices: 21338903--21338955 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21338893 GTTGGCTTAG
21338903 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
21338929 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21338955 G
1 G
21338956 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21339308 original size:159 final size:158
Alignment explanation
Indices: 21338996--21339443 Score: 560
Period size: 159 Copynumber: 2.8 Consensus size: 158
21338986 GACCAGCAGT
* * * *
21338996 AGGATCGGCAGCATGCAG-GGGGGATCGGATCAATCCCCGACTTGCGCATTCTGCCTCTCCGATC
1 AGGACCGGCAGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATC
21339060 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAA
* ** * *
21339125 GCCCTAGCCGGACTGAGGGTTGTGGTAGC
130 GCCCCAGCCGGACCAAGGGCTGTGGTAAC
* * ** * * * *
21339154 GGGACCGGCAGCATGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCGTATTCTACCTCTCCGACC
1 AGGACCGGCAGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATC
* * * *
21339219 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTTGGCATAGGAAGTTCATTCCATG-CTTA
66 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGG-AGTTCATTCCATGTC-TA
21339283 AGCCCCAGCCGGACCAAGGGCTGTGGTAAC
129 AGCCCCAGCCGGACCAAGGGCTGTGGTAAC
* * * ** * * *
21339313 AGGACCAGCAACACGTTGAGGGGGACCAGGTTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTC
1 AGGACCGGCAGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATC
* *
21339378 GACTGAGTGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC-AA
66 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAA
21339442 GC
130 GC
21339444 ATATGGAGTT
Statistics
Matches: 242, Mismatches: 43, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
158 23 0.10
159 216 0.89
160 3 0.01
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
AGGACCGGCAGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATC
GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAG
CCCCAGCCGGACCAAGGGCTGTGGTAAC
Found at i:21340176 original size:26 final size:26
Alignment explanation
Indices: 21340140--21340192 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21340130 GTTAAGTTAG
*
21340140 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21340166 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21340192 G
1 G
21340193 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21340713 original size:26 final size:26
Alignment explanation
Indices: 21340663--21340715 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21340653 GTTGGCTTAG
* *
21340663 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATCTCTAA
21340689 GCATACAGAGTTCATTCCCA-CTCTAA
1 GCATACAGAGTTCATT-CCATCTCTAA
21340715 G
1 G
21340716 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATCTCTAA
Found at i:21340914 original size:197 final size:196
Alignment explanation
Indices: 21340557--21340914 Score: 488
Period size: 197 Copynumber: 1.8 Consensus size: 196
21340547 GGGTTGTGGT
* * * * * * *
21340557 AGCAGGATCGATAGCACGTAGGGGGGATCGGGCCGGTCCTCGGCTTGCGCATTCTGCCTCTCCGA
1 AGCAGGATCGACAACACGTAGGGGGGACCGGGCCGATCCCCGACTTGAGCATTCTGCCTCTCCGA
* * *
21340622 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 CCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
21340687 AAGCATACAGAGTTCATTCCCACTCTAAGATTGGATCGGACCGAGGGTTGCGGCCTTAGGACCAG
131 AAGCATACAGAGTTCATTCCCACTCTAAGATTGGATCGGACCGAGGGTTGCGGCCTTAGGACCAG
21340752 C
196 C
* * * * *
21340753 AGCAGGATCGACAACACGTAAGGGGGGACCGTGTCGATCCCCGACTTGAGTATTTTGCGTCTCCG
1 AGCAGGATCGACAACACGT-AGGGGGGACCGGGCCGATCCCCGACTTGAGCATTCTGCCTCTCCG
* * * *
21340818 GCCGGCTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTTATCCCCA-GT
65 ACCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGT
21340882 CTAAGCATAC-GAAGTTCATTCCCAAC-CTAAGAT
129 CTAAGCATACAG-AGTTCATTCCC-ACTCTAAGAT
21340915 CATACCAGAC
Statistics
Matches: 139, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
196 18 0.13
197 116 0.83
198 5 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (196 bp):
AGCAGGATCGACAACACGTAGGGGGGACCGGGCCGATCCCCGACTTGAGCATTCTGCCTCTCCGA
CCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
AAGCATACAGAGTTCATTCCCACTCTAAGATTGGATCGGACCGAGGGTTGCGGCCTTAGGACCAG
C
Found at i:21341238 original size:26 final size:26
Alignment explanation
Indices: 21341202--21341254 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21341192 GTTGGCTTAG
21341202 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21341228 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21341254 G
1 G
21341255 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21342165 original size:26 final size:26
Alignment explanation
Indices: 21342136--21342188 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21342126 GTTGGCTTAG
21342136 GCATAAAGAGTTCATT-CCATGTCTAA
1 GCATAAAGAGTTCATTCCCA-GTCTAA
**
21342162 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATTCCCAGTCTAA
21342188 G
1 G
21342189 ATCGACTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCAGTCTAA
Found at i:21342415 original size:196 final size:195
Alignment explanation
Indices: 21342030--21342385 Score: 446
Period size: 196 Copynumber: 1.8 Consensus size: 195
21342020 AGGTTGCGAT
* * * *
21342030 AGCAGGATCGATAACACGTAGGGGGGATCGGGCCAATCCCCAACTTGCGTATTCTGTCTCTCCGA
1 AGCAGGATCGATAACACGCAGGGGGGATCGGGCCAATACCCAACTTGCGCATTCTGCCTCTCCGA
* * * * *
21342095 CCGACTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCT
66 CCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCACGTCT
* **
21342160 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGACTGGACCAAGGGTTACGGTAGCAGGACCAGC
131 AAGCATATGGAGTTCATTCCAAGTCTAAGATCGACTGGACCAAGGGTTACGACAGCAGGACCAGC
* * * * * **
21342225 AGCAGGATCGGTAGCACGCATGGGGGGATCGGGCCGATACCCTACTTGCGCATTTTGCCTCTTTG
1 AGCAGGATCGATAACACGCA-GGGGGGATCGGGCCAATACCCAACTTGCGCATTCTGCCTCTCCG
* * * * * *
21342290 GCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGTAT-ACGAAGTTCA-TCCCCGT
65 ACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAAG-AGTTCATTCCACGT
*
21342353 CTAAGCATATGGAGTTTATTCCAAGTCTAAGAT
129 CTAAGCATATGGAGTTCATTCCAAGTCTAAGAT
21342386 TGGATCGGAT
Statistics
Matches: 135, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
195 55 0.41
196 80 0.59
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.26
Consensus pattern (195 bp):
AGCAGGATCGATAACACGCAGGGGGGATCGGGCCAATACCCAACTTGCGCATTCTGCCTCTCCGA
CCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCACGTCT
AAGCATATGGAGTTCATTCCAAGTCTAAGATCGACTGGACCAAGGGTTACGACAGCAGGACCAGC
Found at i:21343210 original size:26 final size:26
Alignment explanation
Indices: 21343174--21343226 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21343164 GTTGACTTAG
*
21343174 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
21343200 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21343226 G
1 G
21343227 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21343628 original size:159 final size:158
Alignment explanation
Indices: 21343200--21343631 Score: 420
Period size: 159 Copynumber: 2.7 Consensus size: 158
21343190 CCTAGTCTAA
* * * * * *
21343200 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGAGTTGCAGCAGTAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGAAGGATTGACA
* * * * *
21343265 GCACGTAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCCCTCCAGCCGGCTGAGTGCC
66 GCACGTAGGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGACTCAGTGCC
* *
21343330 CGTACACCCGTTTCGTGGGTTGGCCTAG
131 CGAACACCCGTTTCGTGGGTTGACCTAG
** * * ** * ** * ** *
21343358 GCATAGGGAGTTCATT-CAATTTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTGAC
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGAAGGATTGAC
* * * * *
21343422 AGCACGTAGAGGGGGACCAGGTCGATCCTC-AGCTTACGTATTATGCCTCTCC-GATCGACTCAG
65 AGCACGTAG-GGGGGACCAGGTCGATCCCCGA-CTTGCGCATTCTGCCTCTCCAG-CCGACTCAG
* * ** *
21343485 TGCCTGAACGCTTGTTTCGTGGGTTGACTTAG
127 TGCCCGAACACCCGTTTCGTGGGTTGACCTAG
** *
21343517 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGAAGGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGAAGGATTGACA
* * *
21343582 GCACGTAGGGGAGGATCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTC
66 GCACGTAGGGG-GGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTC
21343632 TGACTAGCTG
Statistics
Matches: 210, Mismatches: 57, Indels: 13
0.75 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 56 0.27
159 149 0.71
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGAAGGATTGACA
GCACGTAGGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGACTCAGTGCC
CGAACACCCGTTTCGTGGGTTGACCTAG
Found at i:21343903 original size:26 final size:26
Alignment explanation
Indices: 21343872--21343924 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21343862 ATAGACTTAG
21343872 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21343898 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21343924 G
1 G
21343925 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21344611 original size:26 final size:26
Alignment explanation
Indices: 21344561--21344613 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21344551 GTTTACTTAG
* *
21344561 GCATACGTAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCTCAATCTAA
21344587 GCATACGGAGTTCATTCCT-AATCTAA
1 GCATACGGAGTTCA-TCCTCAATCTAA
21344613 G
1 G
21344614 ATAAAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAATCTAA
Found at i:21345175 original size:26 final size:26
Alignment explanation
Indices: 21345144--21345196 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21345134 GTTGACTTAG
* *
21345144 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
*
21345170 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
21345196 G
1 G
21345197 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:21347214 original size:158 final size:158
Alignment explanation
Indices: 21346784--21347237 Score: 474
Period size: 159 Copynumber: 2.9 Consensus size: 158
21346774 AACAGGACCA
* * * * *
21346784 GTAGTAGGATCAACAGCACGCAGGGGGGATTGGGCCGATCCCCGGCTTACGCATTCTACCTCTCC
1 GTAGCAGGATCCACAGCACGCAGAGGGGATCGGG-CGATCCCCGGCTTACGCATTCTGCCTCTCC
* * * * * * *
21346849 GACCGGCTGAGCACCTGCACACCCGTTTCGTGGGTTGGCTTAGGTATA-GCGAGTTCATT-TCAT
65 GATCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCTCAG
*
21346912 GTCTAAGCCCCAGCCGGACCAAGGGTTATG
129 GTCTAAGCACCAGCCGGACCAAGGGTTATG
* * ** *
21346942 GTAGCAGGA-CCGATAGCACGTAGAAGGGGA-CTGGGCTGATCCCTAGCTTACGCATTATGCCTC
1 GTAGCAGGATCC-ACAGCACGCAG-AGGGGATC-GGGC-GATCCCCGGCTTACGCATTCTGCCTC
* * * * *
21347005 TCCGATGGGCTCAG-TGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCT
62 TCCGATCGGCTGAGCT-CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCT
* * *
21347069 C-GGTCTAAG-ATCAGACCGTATCAAGGGTTATG
126 CAGGTCTAAGCACCAG-CCGGACCAAGGGTTATG
* * * *
21347101 GTAGCAGGATCCACAGTACGCAGAGGGGATCGGGTCGGTCCCCGGCTTGCCCATTCTGCCTCTCC
1 GTAGCAGGATCCACAGCACGCAGAGGGGATCGGG-CGATCCCCGGCTTACGCATTCTGCCTCTCC
* * *
21347166 GATCGGCTGAGCTCCCGCACGTTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTC-CATG
65 GATCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTCAGG
21347230 TCTAAGCA
130 TCTAAGCA
21347238 TACGAAGTTC
Statistics
Matches: 239, Mismatches: 43, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
157 2 0.01
158 111 0.46
159 121 0.51
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GTAGCAGGATCCACAGCACGCAGAGGGGATCGGGCGATCCCCGGCTTACGCATTCTGCCTCTCCG
ATCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTCAGGT
CTAAGCACCAGCCGGACCAAGGGTTATG
Found at i:21347246 original size:26 final size:26
Alignment explanation
Indices: 21347206--21347261 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
21347196 TGGGTTGGCT
*
21347206 TAAGCATACGGAGTTCA-TTCCATGTC
1 TAAGCATACGAAGTTCATTTCCA-GTC
21347232 TAAGCATACGAAGTTCATTTCCAGTC
1 TAAGCATACGAAGTTCATTTCCAGTC
21347258 TAAG
1 TAAG
21347262 ATTGGACCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTTCCAGTC
Found at i:21347443 original size:26 final size:26
Alignment explanation
Indices: 21347407--21347459 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21347397 GTTGACTTTG
21347407 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21347433 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21347459 G
1 G
21347460 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21347785 original size:26 final size:26
Alignment explanation
Indices: 21347749--21347800 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21347739 TTGGCTTAGC
21347749 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
*
21347775 CATACGTAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
21347801 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:21349492 original size:159 final size:159
Alignment explanation
Indices: 21349266--21349712 Score: 488
Period size: 159 Copynumber: 2.8 Consensus size: 159
21349256 CAGGATCGGT
* * * * ** *
21349266 AGCACACAG-GGGGGACCAGGTCGATCCTCGGCTTGCGTATTCTGCCTCTCTGACCAGCTGAGTG
1 AGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCG
** * *
21349330 CCCGCACACCTATTTCATCGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCTAGCC
66 CCCGCATGCCTATTTCATGGGTTGGCTTAGGCATAGG-AGTTCATTCCATGTCTAAGCCCCAGCC
* *
21349395 GGA-TCGAGGGTTG-TGGCAGCGGGACCTAC
130 AGACT-GAGGGTTGATGGCAGCGGGACCGAC
*
21349424 AGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCG
1 AGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCG
* *
21349489 CCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
66 CCCGCATGCCTATTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGCC
* *
21349554 AGACTGAGGGTTGATGGTAGCGGGATCGAC
130 AGACTGAGGGTTGATGGCAGCGGGACCGAC
* * * * * *
21349584 AGCAC-GAGAGGGGGATCGGGTCCGATTCCCTGACTTTGCGCCATTCTACCTCTGCCGATTCGGC
1 AGCACACAGAGGGGGACCGGGT-CGA-TCCCCGGC-TTGCG-CATTCTGCCTCT-CCGACT-GGC
* * * * * *
21349648 TAAACAACCCGTATGCCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG
60 TGAGC-GCCCGCATGCCT-ATTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAG
21349713 TATACGAAGT
Statistics
Matches: 243, Mismatches: 34, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
158 9 0.04
159 127 0.52
160 24 0.10
161 6 0.02
162 5 0.02
163 11 0.05
164 4 0.02
165 6 0.02
166 9 0.04
167 42 0.17
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
AGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCG
CCCGCATGCCTATTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCCA
GACTGAGGGTTGATGGCAGCGGGACCGAC
Found at i:21349718 original size:26 final size:26
Alignment explanation
Indices: 21349688--21349738 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21349678 TGGCTTAGGC
*
21349688 ATACGGAGTTCATTCCATA-TCTAAGT
1 ATACGAAGTTCATTCC-TAGTCTAAGT
21349714 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATTCCTAGTCTAAG
21349739 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (26 bp):
ATACGAAGTTCATTCCTAGTCTAAGT
Found at i:21349931 original size:26 final size:26
Alignment explanation
Indices: 21349895--21349947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21349885 GTTGACTTAG
*
21349895 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21349921 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21349947 G
1 G
21349948 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21350445 original size:26 final size:26
Alignment explanation
Indices: 21350395--21350447 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21350385 GTGGGCTTAG
*
21350395 GCATATGGAATTCATTCCATGTCTAA
1 GCATATGGAATTCATTCCATCTCTAA
*
21350421 GCATATGGAGTTCATTCCCA-CTCTAA
1 GCATATGGAATTCATT-CCATCTCTAA
21350447 G
1 G
21350448 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATGGAATTCATTCCATCTCTAA
Found at i:21350717 original size:13 final size:13
Alignment explanation
Indices: 21350699--21350725 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21350689 ATGCATTATT
21350699 CCTCTCCGACCGA
1 CCTCTCCGACCGA
21350712 CCTCTCCGACCGA
1 CCTCTCCGACCGA
21350725 C
1 C
21350726 TGAGTGCCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.56, G:0.15, T:0.15
Consensus pattern (13 bp):
CCTCTCCGACCGA
Found at i:21351299 original size:26 final size:26
Alignment explanation
Indices: 21351263--21351315 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21351253 GTTGGCTTAG
21351263 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
21351289 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21351315 G
1 G
21351316 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21352024 original size:26 final size:27
Alignment explanation
Indices: 21351987--21352040 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
21351977 GTTAACTTAG
*
21351987 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGAAGTTCATTCCCCAGTCTAA
*
21352013 GCATACGAAGTTCATTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCCAGTCTAA
21352040 G
1 G
21352041 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (27 bp):
GCATACGAAGTTCATTCCCCAGTCTAA
Found at i:21352421 original size:158 final size:157
Alignment explanation
Indices: 21352013--21352514 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 157
21352003 CCCAGTCTAA
** * * * *
21352013 GCATACGAAGTTCATTTCCCAGTCTAAGATTGGACCGGATCGTGGGTTACGGTAGCAGGATCGAC
1 GCATACGAAGTTCA-TTCCCAGTCTAAGATCAGACCGGAT-GAGGGTTGCGGCAGTAGGATCGAC
* * ** * * *
21352078 AGCACGCAGG-GGGGATCGGGCCGTTCCCTGGGTTGCGCATTTTGCCTCTCCGGTCGGCTGAGCG
64 AGCACGCAGGAGGGGACCAGGCCAATCCCTGGCTTGCGCATTATGCCTCTTC-GTCGGCTGAGCG
* * *
21352142 CCCGCATGCCCATTT-ATCGGTTGGCTTAG
128 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * * * * *
21352171 GCATAGGGATTTCATT-CCATGTCTAAGGCTCAG-CCAGACTGAGGGTTGTGGCAGTGGGATCGG
1 GCATACGAAGTTCATTCCCA-GTCTAA-GATCAGACCGGA-TGAGGGTTGCGGCAGTAGGATCGA
* * *
21352234 TAGCACGCA-GAGGAAGACCAGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCAGTCGGCTCAG
63 CAGCACGCAGGAGG-GGACCAGGCCAATCCCTGGCTTGCGCATTATGCCTCTTC-GTCGGCTGAG
*
21352298 CGCCCGCACGCTCATTTCATGGGTTGACTTAG
126 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* ** *
21352330 GCATACGAAGTTCATTCCCAGTATAAGATCAGACCGGATAGAGGGTTGCCACAGTAGGATTGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAT-GAGGGTTGCGGCAGTAGGATCGACA
* * * * * *
21352395 GCACGTAGGAGGGGACCAGGCC-ATCCCTGACTTGCGCATTCTGCCTTTTCGACCGGCTGAACGC
65 GCACGCAGGAGGGGACCAGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCG-TCGGCTGAGCGC
* * * * *
21352459 CCGTACACTTATTTCGTGGGTTGGTTTAG
129 CCGCACGCTCATTTCATGGGTTGGCTTAG
*
21352488 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
21352515 CATACGGAGT
Statistics
Matches: 274, Mismatches: 58, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.01
157 42 0.15
158 154 0.56
159 67 0.24
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATGAGGGTTGCGGCAGTAGGATCGACAG
CACGCAGGAGGGGACCAGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGTCGGCTGAGCGCCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:21352524 original size:26 final size:26
Alignment explanation
Indices: 21352488--21352540 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21352478 GTTGGTTTAG
21352488 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
21352514 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
21352540 G
1 G
21352541 ATTAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:21352904 original size:26 final size:26
Alignment explanation
Indices: 21352868--21352920 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21352858 GTTGACTTTG
*
21352868 GCATATGGAGTTCATGACCAGTCTAA
1 GCATACGGAGTTCATGACCAGTCTAA
**
21352894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGACCAGTCTAA
21352920 G
1 G
21352921 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATGACCAGTCTAA
Found at i:21353964 original size:686 final size:687
Alignment explanation
Indices: 21352647--21354084 Score: 2207
Period size: 686 Copynumber: 2.1 Consensus size: 687
21352637 CTCCGATCGA
* *
21352647 CTGAGCGCCCCCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGC
* * * * * *
21352712 CTCTGTCAAATCGAGGGTTATGGTAGTAAGACTGGCAGTGGGATCGGTAGCACGCAGAGGGGGAT
66 CACTGTCAAATCGAGGGTTATGGTAGCAAGACTGGCAGCGGGATCGGCAACACGCAGAAGGGGAT
* * * * * *
21352777 CAGGCTGATCCCTGACTTACGCATTATGCCTCTCCGGTCGGCCTCTTTGGTCGGCTGAGCGCTCG
131 CAGGCTGATCCCCGACTTACGCATTATGCCTCTCCGATCAGCCTCTCTGGCCGGCTGAGCGCCCG
* *
21352842 CACGCTCGTTTTGTGGGTTGACTTTGGCATATGGAGTTCATGACCAGTCTAAGCATACGGAGTTC
196 CACGCTCGTTTCGTGGGTTGACTTTGGCATATGGAGTTCAGGACCAGTCTAAGCATACGGAGTTC
* * **
21352907 ATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAAGATCGGCAGCAAGCATGGGGG
261 ATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAAGATCGGCAGCAAGCATGGGGG
* * * * *
21352972 GACCAAACCGATCCCTGGCTTACGTATTCTACCTCTCCTGTCGGTTGAACGCCTGTACGCCCGTT
326 GACCAAACCGATCCCTAGCTTACGCATTCTACCTCTCCTATCGGTTGAACGCCCGCACGCCCGTT
* *
21353037 TCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGTCAGACCGAGGGTTGT
391 TCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAATCAGACCAAGGGTTGT
* * *
21353102 GGTAGCGGGACCGACAGCACGAAGAGGGGGATCGGGTCGATCCCTGACTTGCACATTATGCCTAT
456 GGCAGCGGGACAGACAGCACGAAGAGGGGGACCGGGTCGATCCCTGACTTGCACATTATGCCTAT
* * *
21353167 TCAGCCGATTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA
521 TCAGCCGATTCAACACCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA
** * *
21353232 GTCTAAGATTGGACCAAACCGAGGGTTACGACAGCATGATTGATAACACCCAGAGGGGGATCGGG
586 GTCTAAGATCAGACCAAACCGAGGGTTACGACAGCAGGATTGATAACACCCAGAGGGGGATCAGG
21353297 CCAAACCCTGGCTT-TCGCATTCTGCCTCTCCGGCTGG
651 CCAAACCCTGGCTTCT-GCATTCTGCCTCTCCGGCTGG
* ** * *
21353334 CTGAGCGCCCGTACGCTCGTTTTATGGGTTGGATTAGGCATATGGAGTTCATTCCATGTTTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGC
**
21353399 CACTGTCGGATCGAGGGTTATGGTAGCAAGACTGGCAGCGGGATCGGCAACACGCAGAAGGGGAT
66 CACTGTCAAATCGAGGGTTATGGTAGCAAGACTGGCAGCGGGATCGGCAACACGCAGAAGGGGAT
* *
21353464 CAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCAAG-CTCTCTGGCCGGTTGAGCGCCC
131 CAGGCTGATCCCCGACTTACGCATTATGCCTCTCCGATC-AGCCTCTCTGGCCGGCTGAGCGCCC
* * * *
21353528 GCATGCTCGTTTCGTGGGTTGACTTTGGTATATGGAGTTCAGGTCTAGTCTAAGCATACGGAGTT
195 GCACGCTCGTTTCGTGGGTTGACTTTGGCATATGGAGTTCAGGACCAGTCTAAGCATACGGAGTT
* *
21353593 CATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGACAGCAAGATCGGTAGCAAGCA-GGGG
260 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAAGATCGGCAGCAAGCATGGGG
* * * *
21353657 GGACCGAGCCGATCCCTAGCTTACGCATTCTGCCTCTCCTATCGGTTGAGCGCCCGCACGCCCGT
325 GGACCAAACCGATCCCTAGCTTACGCATTCTACCTCTCCTATCGGTTGAACGCCCGCACGCCCGT
* ** *
21353722 TTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGATCAAGGGTTG
390 TTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAATCAGACCAAGGGTTG
*
21353787 TGGCAGCGGGACAGACAGCACGAAGAGGGGGACCGGGTCGATCCCTGACTTGCGCATTATGCCTA
455 TGGCAGCGGGACAGACAGCACGAAGAGGGGGACCGGGTCGATCCCTGACTTGCACATTATGCCTA
* *
21353852 TTCAGTCGGTTCAACACCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCC
520 TTCAGCCGATTCAACACCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCC
* * * **
21353917 AGTCTAAGATCAGACCGAACCGAGGGTTGCGATAGCAGGATTGATAACACGTAGAGGGGGATCAG
585 AGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCAGGATTGATAACACCCAGAGGGGGATCAG
21353982 GCCAAACCCTGGCTTCTGCATTCTGCCTCTCCGGCTGG
650 GCCAAACCCTGGCTTCTGCATTCTGCCTCTCCGGCTGG
* *
21354020 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGC
21354085 ATACGGAGTT
Statistics
Matches: 674, Mismatches: 75, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
686 390 0.58
687 283 0.42
688 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (687 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGC
CACTGTCAAATCGAGGGTTATGGTAGCAAGACTGGCAGCGGGATCGGCAACACGCAGAAGGGGAT
CAGGCTGATCCCCGACTTACGCATTATGCCTCTCCGATCAGCCTCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTTGGCATATGGAGTTCAGGACCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCAAGATCGGCAGCAAGCATGGGGG
GACCAAACCGATCCCTAGCTTACGCATTCTACCTCTCCTATCGGTTGAACGCCCGCACGCCCGTT
TCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAATCAGACCAAGGGTTGT
GGCAGCGGGACAGACAGCACGAAGAGGGGGACCGGGTCGATCCCTGACTTGCACATTATGCCTAT
TCAGCCGATTCAACACCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCAAACCGAGGGTTACGACAGCAGGATTGATAACACCCAGAGGGGGATCAGG
CCAAACCCTGGCTTCTGCATTCTGCCTCTCCGGCTGG
Found at i:21358643 original size:26 final size:26
Alignment explanation
Indices: 21358607--21358659 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21358597 GTTGACTTAG
*
21358607 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
21358633 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21358659 G
1 G
21358660 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21359006 original size:159 final size:157
Alignment explanation
Indices: 21358633--21359054 Score: 361
Period size: 159 Copynumber: 2.7 Consensus size: 157
21358623 CCCAGTCTAA
* * *
21358633 GCATACGGAGTTCATTCCCAATCTAAGATC-GAACCAGACCGAGGGTTGCGACAGTAGGATCGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCG-CAGCAGGA-CCAG
** * * * * ** * * *
21358697 -AGCACGTTGGGGGAATTGGGTCAATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCG
63 CAGCACGCAGGGGGGATCGGGTCGATCCTTGGCTTGCACATTATGCCTCTCCGATCGGCTCAGCA
* * *
21358761 CCTGCACGCCCATTTCGTGAGTTGGCTTAG
128 CCCGCACACCCATTTCGTGAGTTGACTTAG
* * * ** * * *
21358791 GCATAGGGAGTTCATT-CTATGACTAAGCCCCAG-CCAGACCGAGCGTTGTGGTAGCAGGACCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTG-CGCAGCAGGACCAG
* * * *
21358854 CAGCACGCAGAGGGGGATCGGGTCGATCCTTGGCTTGCACATTATGCCTTTTCGGTCGGTTCAGC
63 CAGCACGCAG-GGGGGATCGGGTCGATCCTTGGCTTGCACATTATGCCTCTCCGATCGGCTCAGC
** * *
21358919 ACCCGCACATTCGTTTCGTGGGTTGACTTAG
127 ACCCGCACACCCATTTCGTGAGTTGACTTAG
* *
21358950 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATC-GAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCAGGACCAG-C
* * * *
21359014 AGCACACAGGGGGGA-CTGGGTTGATCCTCGACTTGCACATT
64 AGCACGCAGGGGGGATC-GGGTCGATCCTTGGCTTGCACATT
21359055 TTTCTTCTCC
Statistics
Matches: 206, Mismatches: 47, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
157 6 0.03
158 78 0.38
159 119 0.58
160 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGCAGCAGGACCAGCAG
CACGCAGGGGGGATCGGGTCGATCCTTGGCTTGCACATTATGCCTCTCCGATCGGCTCAGCACCC
GCACACCCATTTCGTGAGTTGACTTAG
Found at i:21359137 original size:26 final size:26
Alignment explanation
Indices: 21359108--21359160 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21359098 GTTGGCTTAG
* *
21359108 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCAAAGTCTAA
21359134 GCATACGGAGTTCATTCAAAGTCTAA
1 GCATACGGAGTTCATTCAAAGTCTAA
21359160 G
1 G
21359161 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCAAAGTCTAA
Found at i:21359908 original size:159 final size:159
Alignment explanation
Indices: 21359633--21360003 Score: 388
Period size: 159 Copynumber: 2.3 Consensus size: 159
21359623 TAAGTGCCTA
* * * *
21359633 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGAT
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAAACGGAT
*** * * *
21359698 CGAGGGTTGTGGTAGCGGGACCAACAGCACATAGAGGGGGACCAGGCTGATCCCCAGCTTGCGCA
66 CGAGGGTTACAGTAGCAGGACCAACAGCACACAGAGGGGGACCAGGCTGATCCCCAGCTTGCACA
* *
21359763 TCATGCCTCTTCGACC-AGCTCAGCACCCT
131 TCATGCCTCTCCGACCGA-CTCAGCACCCG
* * *
21359792 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAAAACGGA
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAAAACGGA
* * * * * ** * * * *
21359856 TCGAGGGTTACAGTAGCATGATCGATAGTATGCAG-GGGGAGACCGGGTTGATCCTCGGCTTGCA
65 TCGAGGGTTACAGTAGCAGGACCAACAGCACACAGAGGGG-GACCAGGCTGATCCCCAGCTTGCA
* ** * ** *
21359920 TATTTTGCCTCTCCGACCGACTGAGTGCCGG
129 CATCATGCCTCTCCGACCGACTCAGCACCCG
*
21359951 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
21360004 CATACATAAT
Statistics
Matches: 172, Mismatches: 36, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
158 7 0.04
159 161 0.94
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAAACGGAT
CGAGGGTTACAGTAGCAGGACCAACAGCACACAGAGGGGGACCAGGCTGATCCCCAGCTTGCACA
TCATGCCTCTCCGACCGACTCAGCACCCG
Found at i:21360213 original size:868 final size:867
Alignment explanation
Indices: 21358571--21360899 Score: 2873
Period size: 868 Copynumber: 2.7 Consensus size: 867
21358561 TCTGGTCGGT
*
21358571 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCA
* * * * *
21358636 TACGGAGTTCATTCCCAATCTAAGATC-GAACCAGACCGAGGGTTGCGACAGTAGGATCGAGAGC
66 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGTAGGATCGACAAC
* * * * *
21358700 ACGTTGGGGGAATTGGGTCAATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCTG
130 ACGTAGGGGGGACT-GGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGCCTG
* * * * * *
21358765 CACGCCCATTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCTATGACTAAGCCCCAGCCAGAC
194 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * *
21358830 CGAGCGTTGTGGTAGCAGGACCAGCAGCACGCAGAGGGGGATCGGGTCGATCCTTGGCTTGCACA
259 CGAGGGTTGTGGTAGCGGGACCAACAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGCACA
* ** *
21358895 TTATGCCTTTTCGGTCGGTTCAGCACCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACAGAG
324 TTATGCCTCTTCGACCGGTTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAG
*
21358960 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACACAGGG
389 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACACAGGG
* * * * * *
21359025 GGGACTGGGTTGATCCTCGACTTGCACATTTTTCTTCTCCGGCCGACTGAGTGCCCGTACGATCG
454 GGGACCGGGTTGATCCTCGACTTGCACATTTTGCCTCTCCGACCGACTGAGTGCCCGCACGCTCG
* * *
21359090 TTTCGCGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCAAAG
519 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAATTCATTCAAAG
* * ** * * * * * * *
21359155 TCTAAGATCGGATCGGGCTGAGGGTTGCAGTAACAGGACCAGTAGCAGGATTGGTAGCACGTAAG
584 TCTAAGATCGGATCAGACCAAGGGTTGCAGCAACAAGACCAGCAACAGGATCGGCAGCAAGTAAG
** * * * * *
21359220 GGGGGACCGGATTGATCCTCGACTTGCGCATTCTAACTCTCCGGCCGGTTGAGCGCCCGCATGCT
649 AAGGGACCGGACTGATCCCCGACTTGCGCATTCTAACTCTCCGGCCGGCTGAACGCCCGCAAGCT
21359285 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCAAGGG
714 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCAAGGG
* * ** * *
21359350 TTGT-GCAAGCAGGATCGGTAGTGGGATCGACAGCACGCA-AAGGGGACCGGGTTGATCCCCGGC
779 TTGTGGC-AGCAAGACCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCGGGCTGATCCCCAGC
21359413 TT-GTGCATTATGCCTCTCCGACC-AGC
843 TTAGTG--TTATGCCTCTCCGACCGA-C
* *
21359439 TGAGCACCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCA
* * *
21359504 TACAGAGTTCATTCCGAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGTAGGATCGACAACA
66 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAACA
* * * * * * *
21359569 CGTAGGGGGGACTGGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCAGTTAAGTGCCTAC
131 CGTAGGGGGGACTGG-TCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGCCTGC
* *
21359634 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATC
195 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
** * * ** *
21359699 GAGGGTTGTGGTAGCGGGACCAACAGCACATAGAGGGGGACCAGG-CTGATCCCCAGCTTGCGCA
260 GAGGGTTGTGGTAGCGGGACCAACAGCACGCAGAGGGGGATCGGGTC-GATCCCTGGCTTGCACA
* * * ** * *
21359763 TCATGCCTCTTCGACCAGCTCAGCACCCTTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
324 TTATGCCTCTTCGACCGGTTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAG
* * * * * * * * **
21359828 TTCATTCCCAGTCTAAGATCAAAACGGATCGAGGGTTACAGTAGCATGATCGATAGTATGCAGGG
389 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACACAGGG
* * *
21359893 GGAGACCGGGTTGATCCTCGGCTTGCATATTTTGCCTCTCCGACCGACTGAGTGCCGGCACGCTC
454 GG-GACCGGGTTGATCCTCGACTTGCACATTTTGCCTCTCCGACCGACTGAGTGCCCGCACGCTC
* * **
21359958 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACATAATTCATTCCCA
518 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAATTCATTCAAA
*
21360023 GTCTATA-ATCGGATCAGACCAAGGGTTGC-GACAATAAGACCAGCAACAGGATCGGCAGCAAG-
583 GTCTA-AGATCGGATCAGACCAAGGGTTGCAG-CAACAAGACCAGCAACAGGATCGGCAGCAAGT
* * * * * * * *
21360085 CAGAAGGGATCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAATGCCCGTAA
646 AAGAAGGGACCGGACTGATCCCCGACTTGCGCATTCTAACTCTCCGGCCGGCTGAACGCCCGCAA
* * *
21360150 GCTC-TGTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCTATGTCTAAGCCCCAATCGAACCA
711 GCTCGT-TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCA
* * *
21360214 AGGGTTGTGGCAGCAAGACCGGTAGCAGGATCGACAGCTCGCAGAGGGGGATCGGGCTGATCCCC
775 AGGGTTGTGGCAGCAAGACCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCGGGCTGATCCCC
* *
21360279 AGCTTACGTGTTATGCCTCTCTGGCCGAC
840 AGCTTA-GTGTTATGCCTCTCCGACCGAC
* ** * * *
21360308 TGAGCATCTACACGCTCCTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCTAGTCTATGCA
1 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCA
* * * * *
21360373 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGTGGCAGCAAGATCGGCAACA
66 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAACA
* * * * * * * *
21360438 CGCAAGGGGGACCAGGTCGAT-CCTCAGCTTGTGCATTCTACCTCTCCGGTTGGCTGAGTGCCCG
131 CGTAGGGGGGA-CTGGTCGATCCCT-GGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGCCTG
* * *
21360502 CTCG-TCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA
194 CACGCT-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * * *
21360566 CCGAGGGTTGTGGCAACGGGACCGACAGCATGCAGAGGGGGATCGGGTCGATCCCTGGCTTGCAC
258 CCGAGGGTTGTGGTAGCGGGACCAACAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGCAC
* ** *
21360631 ATTATACCTCTTCGACCGGTTCAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAAGCATACAGA
323 ATTATGCCTCTTCGACCGGTTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGA
* ** * *
21360696 GTTCATTCCCAGTCTAAGATCAGACCAGACCGATGGTTGTGGTAGCAGGATGGACAGCACATAGG
388 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACACAGG
* * * ** * * * * *
21360761 AGGGACCGAGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACACTC
453 GGGGACCGGGTTGATCCTCGACTTGCACATTTTGCCTCTCCGACCGACTGAGTGCCCGCACGCTC
* * * * * **
21360826 GTTTCGTGGGTTGGCTTACGCATACGGAGTTCATTACATGTCTAAGCATACGGAGTTTATTCTCA
518 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAATTCATTCAAA
21360891 GTCTAAGAT
583 GTCTAAGAT
21360900 TTTGAGCCCG
Statistics
Matches: 1229, Mismatches: 215, Indels: 34
0.83 0.15 0.02
Matches are distributed among these distances:
867 5 0.00
868 648 0.53
869 567 0.46
870 6 0.00
871 3 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (867 bp):
TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAACA
CGTAGGGGGGACTGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGCCTGCA
CGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCG
AGGGTTGTGGTAGCGGGACCAACAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGCACATT
ATGCCTCTTCGACCGGTTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACACAGGGGG
GACCGGGTTGATCCTCGACTTGCACATTTTGCCTCTCCGACCGACTGAGTGCCCGCACGCTCGTT
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAATTCATTCAAAGTC
TAAGATCGGATCAGACCAAGGGTTGCAGCAACAAGACCAGCAACAGGATCGGCAGCAAGTAAGAA
GGGACCGGACTGATCCCCGACTTGCGCATTCTAACTCTCCGGCCGGCTGAACGCCCGCAAGCTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCAAGGGTT
GTGGCAGCAAGACCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCGGGCTGATCCCCAGCTTA
GTGTTATGCCTCTCCGACCGAC
Found at i:21360380 original size:26 final size:26
Alignment explanation
Indices: 21360344--21360394 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21360334 GTTGACTTAG
*
21360344 GCATATGGAGTTCA-TCCCTAGTCTAT
1 GCATACGGAGTTCATTCCC-AGTCTAT
21360370 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
21360395 AGATCAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:21360734 original size:159 final size:157
Alignment explanation
Indices: 21360370--21360860 Score: 524
Period size: 158 Copynumber: 3.1 Consensus size: 157
21360360 CCTAGTCTAT
* * * *
21360370 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGTGGCAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
21360435 ACACGCAAGGGGGACCAGGTCGATCCTCAGCTTGTGCATTCTACCTCTCCGGTTGGCTGAGTGCC
66 GCA-GCAAGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTACCTCTCCGATCGGCTGAGTGCC
* * * *
21360500 CGCTC-GTCCGTTTCATGGGTTGGCTTAG
130 CGCACACT-CGTTTCGTGGGTTGGCTTAA
* ** * * * *
21360528 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAACGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGTGGCAGCAGGATCGA
* ** * * * * *
21360591 CAGCATGCAGAGGGGGATCGGGTCGATCC-CTGGCTTGCACATTATACCTCTTCGACCGGTTCAG
64 CAGCA-GCA-AGGGGGACCGGGTCGATCCTC-GGCTTGTGCATTCTACCTCTCCGATCGGCTGAG
*
21360655 TGCCCGCACACTCGTTTCGTGGGTTGACTTAA
126 TGCCCGCACACTCGTTTCGTGGGTTGGCTTAA
* * * *
21360687 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGATGGTTGTGGTAGCAGGATGGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
21360752 GCA-CATAGGAGGGACCGAGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGC
66 GCAGCA-AGG-GGGACCGGGTCGATCCTCGGCTTGTGCATTCTACCTCTCCGATCGGCTGAGTGC
*
21360816 CCGCACACTCGTTTCGTGGGTTGGCTTAC
129 CCGCACACTCGTTTCGTGGGTTGGCTTAA
21360845 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
21360861 ACATGTCTAA
Statistics
Matches: 267, Mismatches: 57, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 8 0.03
158 137 0.51
159 118 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCAGCAAGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTACCTCTCCGATCGGCTGAGTGCCC
GCACACTCGTTTCGTGGGTTGGCTTAA
Found at i:21367001 original size:159 final size:159
Alignment explanation
Indices: 21366757--21367279 Score: 575
Period size: 159 Copynumber: 3.3 Consensus size: 159
21366747 CCCACATGCC
* * ** * * ** *
21366757 CGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGG
1 CGTTTCGTGGGTTGGCTTATGCATACAGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGG
** * *
21366822 TTGTGGCAGCGGGACCGACAGCACACAGAGGGGGACCGGGCCGATCCCTGGCTTGCACATTATGC
66 TTGTGGCAGTAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCACATTATAC
* * *
21366887 CTCTTCGACCGACTCAGCTCCCGCACGCT
131 CTCTCCGACCGGCTCAGCACCCGCACGCT
* * * **
21366916 CGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGG
1 CGTTTCGTGGGTTGGCTTATGCATACAGAGTTCATT-CCATGTCTAAGACCCAACCAGACCGAGG
* * ** * * ** *
21366980 GTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGGACAAGGTCGATCCCTAGCTTGCGTATTCTA
65 GTTGTGGCAGTAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCACATTATA
* * * * *
21367045 CCTCTCCGATCGGCTGAGCGCTCGCACGCC
130 CCTCTCCGACCGGCTCAGCACCCGCACGCT
** * *
21367075 CGTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
1 CGTTTCGTGGGTTGGCTTATGCATACAGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGG
* * * **
21367140 TTGTGGCAGTTGGACCCACAGCACGCAGAGGGGAACCGGGCCGAT-CCTCGGCTTG-TGATTATA
66 TTGTGGCAGTAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCT-GGCTTGCACATTATA
* * *
21367203 CCTCTCCGACCGGCTCAGCACCTGGATGCT
130 CCTCTCCGACCGGCTCAGCACCCGCACGCT
*
21367233 CGTTTCGTGGGGTGGCTTATGCATACAGAGTTCATTCCATGTCTAAG
1 CGTTTCGTGGGTTGGCTTATGCATACAGAGTTCATTCCATGTCTAAG
21367280 CATACATAGT
Statistics
Matches: 296, Mismatches: 65, Indels: 7
0.80 0.18 0.02
Matches are distributed among these distances:
158 77 0.26
159 216 0.73
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTATGCATACAGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGG
TTGTGGCAGTAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCACATTATAC
CTCTCCGACCGGCTCAGCACCCGCACGCT
Found at i:21367290 original size:26 final size:26
Alignment explanation
Indices: 21367253--21367305 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21367243 GGTGGCTTAT
21367253 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
21367279 GCATACATAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
21367305 G
1 G
21367306 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:21367764 original size:158 final size:160
Alignment explanation
Indices: 21367602--21367967 Score: 409
Period size: 158 Copynumber: 2.3 Consensus size: 160
21367592 TCCACAGGCC
* * * * **
21367602 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAAACCGAGG
* * * * ** * *
21367666 GTTGTGGTAGTGGGATCGGTAGCACGCAGAGCGG-GATTAGGCCGATCCCTG-CTTGCGCATTAT
66 GTTATAGCAGTAGGATCGACAGCACGCAG-GCGGAGATCAGGCCGATCCCTGACTTGCACATTAT
* *
21367729 GCCTCTCCGATCGGCTCAGTGCCCGAACACT
130 GCCTCTCCGATAGGCTCAGCGCCCGAACACT
* * *
21367760 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCAAACCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAAACCGAG
* * * * *
21367823 GGTTATAGCAGTAGGATCGACAGCACGTAGGGGGAGATCGGGCCGGTCCCTGACTTGCACATTCT
65 GGTTATAGCAGTAGGATCGACAGCACGCAGGCGGAGATCAGGCCGATCCCTGACTTGCACATTAT
* * * *
21367888 GCCTCTCCGGTAGGCTGAGCGCCCGCACGCT
130 GCCTCTCCGATAGGCTCAGCGCCCGAACACT
* *
21367919 CGTTTCGTGGGGTGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCA
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
21367968 TATGGAGTTT
Statistics
Matches: 171, Mismatches: 31, Indels: 10
0.81 0.15 0.05
Matches are distributed among these distances:
157 6 0.04
158 86 0.50
159 78 0.46
160 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (160 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAAACCGAGG
GTTATAGCAGTAGGATCGACAGCACGCAGGCGGAGATCAGGCCGATCCCTGACTTGCACATTATG
CCTCTCCGATAGGCTCAGCGCCCGAACACT
Found at i:21368170 original size:26 final size:26
Alignment explanation
Indices: 21368134--21368186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21368124 GTTGACTTAG
*
21368134 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21368160 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21368186 G
1 G
21368187 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21368504 original size:26 final size:26
Alignment explanation
Indices: 21368474--21368526 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21368464 GTTGGCTTAG
21368474 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
21368500 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21368526 G
1 G
21368527 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21369237 original size:26 final size:26
Alignment explanation
Indices: 21369207--21369285 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
21369197 GTTGACTTAG
*
21369207 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
21369233 GCATACGGAGTTCATCCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
21369259 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
21369285 G
1 G
21369286 ATCAGACTGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:21369639 original size:155 final size:155
Alignment explanation
Indices: 21369255--21369788 Score: 468
Period size: 155 Copynumber: 3.4 Consensus size: 155
21369245 CATCCCTAAT
* * * *
21369255 CTAA-GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGAGTTGCGACAACAGGAT
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGAT
* * * * *
21369319 CGGCAGCACGCAGGGGGACTGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGG-CTGGCTGA
66 CGACAGCACGTA-GGGGA-GGAGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGA
* * * *
21369383 GCGCCCGTACGCCCGATTCGTGGGTTGG
128 GCGCCCGAATGCTCGTTTCGTGGGTTGG
* * * * ** * * * * * *
21369411 GTTAGGCATAGGGAGTCCATT-CCATGTCTAAGCCCCA-ATCGGACGGAGGTTTGTGGCAGCGGG
1 CTAAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGACAGCAGG
* * * * * * *
21369474 ACCGACAGCACGTAGAGGAGGAGCCGATCCCCTACTTGTGCATTATGCCTCTCCGGTCGACTCAG
64 ATCGACAGCACGTAGGGGAGGAGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* *
21369539 CGCCCGAATGCTCGTTTTGTGGGTTGA
129 CGCCCGAATGCTCGTTTCGTGGGTTGG
* *
21369566 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGATAGTAGGAT
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGAT
* * * * * * *
21369631 CGATAGCACATAGGGGGGGA-CCGGGTCGGACCCTGGCTTGCGCATTCTGTCTTTTCGGTCGGCT
66 CGACAGCACGTAGGGGAGGAGCC-GATC---CCCT-GCTTGCGCATTCTGCCTCTCCGGTCGGCT
* * * * *
21369695 GAGTGCTCGCATGTTCATTTCGTGGGTTGG
126 GAGCGCCCGAATGCTCGTTTCGTGGGTTGG
* * *
21369725 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTC-GACTGGACCGAGGGTTGCGACAGCAGGA
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACTGAGGGTTGCGACAGCAGGA
21369789 CCAGTAGCAA
Statistics
Matches: 292, Mismatches: 74, Indels: 21
0.75 0.19 0.05
Matches are distributed among these distances:
154 4 0.01
155 119 0.41
156 13 0.04
157 48 0.16
158 6 0.02
159 100 0.34
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (155 bp):
CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGAT
CGACAGCACGTAGGGGAGGAGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
CCCGAATGCTCGTTTCGTGGGTTGG
Found at i:21369950 original size:26 final size:26
Alignment explanation
Indices: 21369900--21369952 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21369890 GTTGACTTAG
*
21369900 GCATACGGAGTTCATCCCCTGTCCAA
1 GCATACGGAGTTCATCCCATGTCCAA
*
21369926 GCATATGGAGTTCATTCCCAT-TCCAA
1 GCATACGGAGTTCA-TCCCATGTCCAA
21369952 G
1 G
21369953 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCCAA
Found at i:21370617 original size:25 final size:26
Alignment explanation
Indices: 21370588--21370639 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
21370578 GTTGACTTAT
* *
21370588 GCATACGGAGTTCA-TCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21370613 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21370639 G
1 G
21370640 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21371976 original size:159 final size:158
Alignment explanation
Indices: 21371760--21372264 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 158
21371750 AGGAATGGAC
* * ** *
21371760 CGATCCCCGGCTTGCACATTCTGCCTCTCCGATCAGCTGAAC-CCCCACGTGCCCGTTTTGTGGG
1 CGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCAGCTGAGCGCCGAAC--GCTCGTTTTGTGGG
* *
21371824 TTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCAAACCGAAGGTTGTGGCAGTG
64 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCGAACCGAAGGTTGTGGCAGTG
*
21371889 GGACCGACAGCATACAGAGAGGGACCGGGT
129 GGACCGACAGCATGCAGAGAGGGACCGGGT
* * * * *
21371919 CGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCGCTCGAACGCTCGTTTCGTGTGT
1 CGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCAGCTGAGCGC-CGAACGCTCGTTTTGTGGGT
* ** ** * ** *
21371984 TGACTTAGGCATTTGGAGTTCATTCCCA-GTCTAA-GATCAGACCGAACCGAGGGTTACGACAGT
65 TGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGGCCCAG-CCGAACCGAAGGTTGTGGCAGT
* * * * * *
21372047 AGGATCGATAGCGTGCAG-GGGGGGCCGGGT
128 GGGACCGACAGCATGCAGAGAGGGACCGGGT
* * ** * * *
21372077 CGATCCTCGGCTTACGTATTCTACCTCTCCGGTCAGCTGAGTGCCTGTACGCTCGTTTTGTGGGT
1 CGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCAGCTGAGCGCC-GAACGCTCGTTTTGTGGGT
* * * * * **
21372142 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCGGACTGAAGGTTGTGGTAACGG
65 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCGAACCGAAGGTTGTGGCAGTGG
* *
21372207 GACCGGCAGCATGCAGAGAGGGACCGGGC
130 GACCGACAGCATGCAGAGAGGGACCGGGT
* ** *
21372236 CGATCCCTGGCTTGCGTATTCTACCTCTC
1 CGATCCCCGGCTTGCACATTCTGCCTCTC
21372265 TGACTGGCTG
Statistics
Matches: 271, Mismatches: 67, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
157 4 0.01
158 117 0.43
159 143 0.53
160 4 0.01
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCAGCTGAGCGCCGAACGCTCGTTTTGTGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCGAACCGAAGGTTGTGGCAGTGGG
ACCGACAGCATGCAGAGAGGGACCGGGT
Found at i:21372222 original size:158 final size:158
Alignment explanation
Indices: 21371813--21372264 Score: 489
Period size: 158 Copynumber: 2.8 Consensus size: 158
21371803 CCCACGTGCC
* * *
21371813 CGTTTTGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCAAACCGAAGG
1 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGAACCGAAGG
* ** * *
21371878 TTGTGGCAGTGGGACCGACAGCATACAGAGAGGGACCGGGTCGATCCCCGGCTTGCACATTATGC
66 TTGTGGCAGTGGGACCGACAGCATGCAGAGAGGGACCGGGTCGAT-CCCGGCTTGCGTATTCTAC
*
21371943 CTCTCCGGTCGGCTCAGCGCTCGAACGCT
130 CTCTCCGGTCAGCTCAGCGCTCGAACGCT
* * * ** * *
21371972 CGTTTCGTGTGTTGACTTAGGCATTTGGAGTTCATTCCCA-GTCTAAGA-TCAGACCGAACCGAG
1 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGACCCAG-CCGAACCGAA
** * * * * * * * *
21372035 GGTTACGACAGTAGGATCGATAGCGTGCAG-GGGGGGCCGGGTCGATCCTCGGCTTACGTATTCT
64 GGTTGTGGCAGTGGGACCGACAGCATGCAGAGAGGGACCGGGTCGATCC-CGGCTTGCGTATTCT
* * *
21372099 ACCTCTCCGGTCAGCTGAGTGC-CTGTACGCT
128 ACCTCTCCGGTCAGCTCAGCGCTC-GAACGCT
* * *
21372130 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCGGACTGAAGG
1 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGAACCGAAGG
* ** * *
21372195 TTGTGGTAACGGGACCGGCAGCATGCAGAGAGGGACCGGGCCGATCCCTGGCTTGCGTATTCTAC
66 TTGTGGCAGTGGGACCGACAGCATGCAGAGAGGGACCGGGTCGATCCC-GGCTTGCGTATTCTAC
21372260 CTCTC
130 CTCTC
21372265 TGACTGGCTG
Statistics
Matches: 231, Mismatches: 54, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 6 0.03
158 117 0.51
159 105 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGAACCGAAGG
TTGTGGCAGTGGGACCGACAGCATGCAGAGAGGGACCGGGTCGATCCCGGCTTGCGTATTCTACC
TCTCCGGTCAGCTCAGCGCTCGAACGCT
Found at i:21372288 original size:159 final size:159
Alignment explanation
Indices: 21371813--21372323 Score: 510
Period size: 159 Copynumber: 3.2 Consensus size: 159
21371803 CCCACGTGCC
* * * * *
21371813 CGTTTTGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCAAACCGAAGG
1 CGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGAACCGAAGG
* * ** * *
21371878 TTGTGGCAGTGGGACCGACAGCATACAGAGAGGGACCGGGTCGATCCCCGGCTTGCACATTATGC
66 TTGTGGCAGTGGGACCGACAGCATGCAGAGAGGGACCGGGTCGATCCCTGGCTTGCGTATTCTAC
* * *
21371943 CTCTCCGGTCGGCTCAGCGCTCGAACGCT
131 CTCTCCGGTCGGCTGAGCGCCCGTACGCT
* ** * *
21371972 CGTTTCGTGTGTTGACTTAGGCATTTGGAGTTCATTCCCA-GTCTAAGA-TCAGACCGAACCGAG
1 CGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCTAAGACCCAG-CCGAACCGAA
** * * * * * * * *
21372035 GGTTACGACAGTAGGATCGATAGCGTGCAG-GGGGGGCCGGGTCGAT-CCTCGGCTTACGTATTC
64 GGTTGTGGCAGTGGGACCGACAGCATGCAGAGAGGGACCGGGTCGATCCCT-GGCTTGCGTATTC
* * *
21372098 TACCTCTCCGGTCAGCTGAGTGCCTGTACGCT
128 TACCTCTCCGGTCGGCTGAGCGCCCGTACGCT
* * * * *
21372130 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCGGACTGAAGG
1 CGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGAACCGAAGG
* ** * *
21372195 TTGTGGTAACGGGACCGGCAGCATGCAGAGAGGGACCGGGCCGATCCCTGGCTTGCGTATTCTAC
66 TTGTGGCAGTGGGACCGACAGCATGCAGAGAGGGACCGGGTCGATCCCTGGCTTGCGTATTCTAC
* * *
21372260 CTCT-CTGACTGGCTGAGCACCCGTACGCT
131 CTCTCCGGTC-GGCTGAGCGCCCGTACGCT
* * * *
21372289 TGTTTCATGAGTTGACTTAGGCATACGGAGTTCAT
1 CGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCAT
21372324 CCCCAGTCTA
Statistics
Matches: 275, Mismatches: 69, Indels: 16
0.76 0.19 0.04
Matches are distributed among these distances:
157 5 0.02
158 118 0.43
159 146 0.53
160 6 0.02
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (159 bp):
CGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGAACCGAAGG
TTGTGGCAGTGGGACCGACAGCATGCAGAGAGGGACCGGGTCGATCCCTGGCTTGCGTATTCTAC
CTCTCCGGTCGGCTGAGCGCCCGTACGCT
Found at i:21372339 original size:26 final size:26
Alignment explanation
Indices: 21372309--21372361 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21372299 GTTGACTTAG
21372309 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
21372335 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21372361 G
1 G
21372362 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21372628 original size:343 final size:341
Alignment explanation
Indices: 21371992--21373009 Score: 1229
Period size: 343 Copynumber: 3.0 Consensus size: 341
21371982 GTTGACTTAG
* * * *
21371992 GCATTTGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCGAGGGTTACGACAGTAGGATCGAT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGACAGCAGGATCGAT
* * * * * * *
21372056 AG-CGTGCAGGGGGGGCCGGGTCGATCCTCGGCTTACGTATTCTACCTCTCCGGTCAGCTGAGTG
65 AGACGT--A-GGGGGGACGGGCCGATCCTCGACTTGCGTATTCTGCCTCTTCGGTCGGCTGAGTG
* * *
21372120 CCTGTACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTC
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTC
* * *
21372185 GGACTGAAGGTTGTGGTAACGGGACCGGCAGCATGCAGAGAGGGACCGGGCCGATCCCTGGCTTG
192 GGACTGAAGGTTGTGGCAACGGGACTGGCAGCACGCAGAGAGGGACCGGGCCGATCCCTGGCTTG
* *
21372250 CGTATTCTACCTCTCTGACTGGCTGAGCACCCGTACGCTTGTTTCATGAGTTGACTTAGGCATAC
257 CGTATTCTACCTCTCTGACTGGCTGAGCACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATAC
21372315 GGAGTTCATCCCCAGTCTAA
322 GGAGTTCATCCCCAGTCTAA
* * *
21372335 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAACAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGATA
* * * * *
21372400 GTACGTAGGAGGGATCGAGCCGATCCTCGACTTGCATATTCTGCTTCTTCGG-CTGGCTGGGTGC
66 G-ACGTAGGGGGGA-CGGGCCGATCCTCGACTTGCGTATTCTGCCTCTTCGGTC-GGCTGAGTGC
* * *
21372464 CCGCACGTTCGTTTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGGCCCAGTCG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCG
* *** * *
21372529 GACTGAAGGTTGTGGCAATGGGACTGGCAGCACGCAGAGAGGGACCAAACCGATCCCTAGCTTAC
193 GACTGAAGGTTGTGGCAACGGGACTGGCAGCACGCAGAGAGGGACCGGGCCGATCCCTGGCTTGC
* * * * *
21372594 GTATTCTACCTCTCTGACTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGACATACA
258 GTATTCTACCTCTCTGACTGGCTGAGCACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACG
* *
21372659 AAGTTCATCCCTAGTCTAA
323 GAGTTCATCCCCAGTCTAA
*** * * * *
21372678 GCATGCAGAGTTCATTGCCAATCTAAGATCGGATCAGACCGAGGGTTGCGACAACAGGATCGATA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGATA
* * * * ** * *
21372743 GCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAATCGACTGAGCGCC
66 G-ACGTAGGGGGGAC-GGGCCGATCCTCGACTTGCGTATTCTGCCTCTTCGGTCGGCTGAGTGCC
* * * *
21372808 CGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCGG
* * * *
21372873 ATTGAAGGTTGTGGCAACGGCA-TCGGTAGCACGCAGAGAGGGACCGGGCAGATCCCTGGCTTGC
194 ACTGAAGGTTGTGGCAACGGGACT-GGCAGCACGCAGAGAGGGACCGGGCCGATCCCTGGCTTGC
* * * * * * *
21372937 GGATTCTGCCTCTCTGAACT-GTTGAGCACCCGCAC-ATTCGTTTCGTGGGTTGGCTTAAGCATA
258 GTATTCTACCTCTCTG-ACTGGCTGAGCACCCGTACGCTT-GTTTCGTGGGTTGACTTAGGCATA
21373000 CGGAGTTCAT
321 CGGAGTTCAT
21373010 TCCATCTCTA
Statistics
Matches: 569, Mismatches: 96, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
342 9 0.02
343 552 0.97
344 5 0.01
345 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (341 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGATA
GACGTAGGGGGGACGGGCCGATCCTCGACTTGCGTATTCTGCCTCTTCGGTCGGCTGAGTGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCGGAC
TGAAGGTTGTGGCAACGGGACTGGCAGCACGCAGAGAGGGACCGGGCCGATCCCTGGCTTGCGTA
TTCTACCTCTCTGACTGGCTGAGCACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATCCCCAGTCTAA
Found at i:21372979 original size:159 final size:159
Alignment explanation
Indices: 21372736--21373090 Score: 419
Period size: 159 Copynumber: 2.2 Consensus size: 159
21372726 CGACAACAGG
* * *
21372736 ATCGATAGCACGCAG-GGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAATCGAC
1 ATCGGTAGCACGCAGAGGGGGACCGGGCAGATCCCCGACTTGCGCATTCTGCCTCTCCAATCGAC
* * * *
21372800 TGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
66 TGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATCTCTAAGCC
** * **
21372865 CCAGTCGGATTGAAGGTTGTGGCAACGGC
131 CCAACCAGACGGAAGGTTGTGGCAACGGC
* * * * *
21372894 ATCGGTAGCACGCAGAGAGGGACCGGGCAGATCCCTGGCTTGCGGATTCTGCCTCTCTGAA-CTG
1 ATCGGTAGCACGCAGAGGGGGACCGGGCAGATCCCCGACTTGCGCATTCTGCCTCTC-CAATC-G
* ** *
21372958 -TTGAGCACCCGCACATTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATCTCTAAG
64 ACTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATCTCTAAG
* * * *
21373022 CCCTAACCAGACGGAGGGTTGTGGCAGCGGG
129 CCCCAACCAGACGGAAGGTTGTGGCAACGGC
* * *
21373053 ATTGGTAGCACGCAGAGGGGGACCGGGCTGATCTCCGA
1 ATCGGTAGCACGCAGAGGGGGACCGGGCAGATCCCCGA
21373091 TCGGTTCAGT
Statistics
Matches: 163, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
158 14 0.09
159 146 0.90
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (159 bp):
ATCGGTAGCACGCAGAGGGGGACCGGGCAGATCCCCGACTTGCGCATTCTGCCTCTCCAATCGAC
TGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATCTCTAAGCC
CCAACCAGACGGAAGGTTGTGGCAACGGC
Found at i:21373457 original size:158 final size:159
Alignment explanation
Indices: 21373084--21373631 Score: 444
Period size: 159 Copynumber: 3.5 Consensus size: 159
21373074 ACCGGGCTGA
* * * * *
21373084 TCTCCGATCGGTTCAGTGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTC
1 TCTCCGACCGGATCAGTGCCCAAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** * *** * * * * *
21373149 CA-GTCTAAGATCAGACCGGACCGAGGGTTACGATAGTAGAATCGATAGCATGCAGA-GGGGATC
66 CATGTCTAAGACCAGACCGAACCAAGGGTTGTGGTAACGGGACCGAAAGCACGCAGAGGGGGACC
** * * * * * *
21373212 GGGTTGATCCCCGGCTTGCGCATTCTTCC
131 GGGCCGATCCTCAGCATACGCATTATGCC
* * * * ** ** * * *
21373241 TCTCTGGCC-TACTGAGCACCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT
1 TCTCCGACCGGA-TCAGTGCCCAAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
21373305 CCATGTCTAAGCCCAG-CCGGACCAAGGGTTGTGGTAGCGGGACCGGCAA-CACGCAGAGGGGGA
65 CCATGTCTAAGACCAGACCGAACCAAGGGTTGTGGTAACGGGACC-GAAAGCACGCAGAGGGGGA
*
21373368 CCGGGCCGATTCCT-AGCTTACGCATTATGCC
129 CCGGGCCGA-TCCTCAGCATACGCATTATGCC
* * * * * * *
21373399 TTTCCGACCGGCTCAGTGCCTAAACGCTCGTTTCGTGGGTAGACTTAGTCATACGGAGTTCATTC
1 TCTCCGACCGGATCAGTGCCCAAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-
* * * * * *
21373464 CCA-GTCTAAGATCAGATCGAACCGAGGGTTGTGGTAACGGGACCGAAAGCATGTAGAGGGGGAT
65 CCATGTCTAAGACCAGACCGAACCAAGGGTTGTGGTAACGGGACCGAAAGCACGCAGAGGGGGAC
* *
21373528 CGGGCCGATCCTCAGCATATGCATTCTGCC
130 CGGGCCGATCCTCAGCATACGCATTATGCC
* ** * *
21373558 TCTCCGACCGGATGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTC
1 TCTCCGACCGGATCAGTGCCCAAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
21373623 CATGTCTAA
66 CATGTCTAA
21373632 CCATATAGAG
Statistics
Matches: 302, Mismatches: 78, Indels: 20
0.75 0.19 0.05
Matches are distributed among these distances:
157 79 0.26
158 101 0.33
159 122 0.40
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
TCTCCGACCGGATCAGTGCCCAAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
CATGTCTAAGACCAGACCGAACCAAGGGTTGTGGTAACGGGACCGAAAGCACGCAGAGGGGGACC
GGGCCGATCCTCAGCATACGCATTATGCC
Found at i:21373832 original size:26 final size:26
Alignment explanation
Indices: 21373802--21373854 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21373792 GTTAACTTAG
*
21373802 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
21373828 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21373854 G
1 G
21373855 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21374889 original size:26 final size:26
Alignment explanation
Indices: 21374859--21374911 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21374849 GTTGACTTAG
*
21374859 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
21374885 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
21374911 G
1 G
21374912 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:21375226 original size:159 final size:158
Alignment explanation
Indices: 21374924--21375218 Score: 360
Period size: 159 Copynumber: 1.9 Consensus size: 158
21374914 CGGATCGGAT
* ** * *
21374924 CGACGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGACCGAATCGATCCCCGGCTTGTGCAT
1 CGACGGTTGCGGCAGCAGGACCGACAGCACACAGGGGGGACCGAACCGATCCCCGGCTTGGGCAT
* * * * * * * * * *
21374989 TCTGTCTCTCTGGTCGGCTGAGCGCCTACACATCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TATGCCTCTCCGATCGGCTCAGCGCCGACACATCCGATTCATGGGTTGACTTAGGCATACGGAGT
21375054 TCATTCCATGTCTAAGCCCCAGCTGGAC
131 TCATTCCATGTCTAAGCCCCAGCTGGAC
* * * *
21375082 CGACGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGATCGAGCCGATCCCCGGCTTGGGCA
1 CGACGGTTGCGGCAGCAGGACCGACAGCACACAG-GGGGGACCGAACCGATCCCCGGCTTGGGCA
* *
21375147 TTATGCCTCTCCGATCGGCTCAGCGCCCGA-AC-GCTCGATTCATGGGTTGACTTAGGCGTACGG
65 TTATGCCTCTCCGATCGGCTCAGCG-CCGACACATC-CGATTCATGGGTTGACTTAGGCATACGG
21375210 AGTTCATTC
128 AGTTCATTC
21375219 GTAGTCTAAA
Statistics
Matches: 113, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
158 30 0.27
159 80 0.71
160 3 0.03
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (158 bp):
CGACGGTTGCGGCAGCAGGACCGACAGCACACAGGGGGGACCGAACCGATCCCCGGCTTGGGCAT
TATGCCTCTCCGATCGGCTCAGCGCCGACACATCCGATTCATGGGTTGACTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCTGGAC
Found at i:21375856 original size:159 final size:157
Alignment explanation
Indices: 21375448--21375897 Score: 505
Period size: 157 Copynumber: 2.8 Consensus size: 157
21375438 TAGGACCAGC
** * * * * *
21375448 AGCAAGATTGGCAGCACGCA-AGGAGGGACTAGGCCGATCCCTGGCTTGCGCATTCTGCCTTTTT
1 AGCAAGACCGGCAGCACACAGAGG-GGGACCAAGCCGATCCCCGGCTTGCGCATTCTGCC-TCTT
** * * *
21375512 GACCGGTTGAGCGCCCGCACGCTCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTTATTCCCAG
64 GGTCGGCTGAGCGCCCGCACGCTCGTTTCGA-GGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* *
21375576 TCTAAGATCAGATCAGACCGAGGGTTACGG
128 TCTAAGACCAGACCAGACCGAGGGTTACGG
* * *
21375606 AGCAAGATCGGTAGCACACAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCG
1 AGCAAGACCGGCAGCACACAGAGGGGGACCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTT-G
* * * *
21375670 GTCGGCTGAGCGCCCGTACGCCCGTTTCGAGTGTTGGCTTAGGCATAGGGAGTTCATT-CCATGT
65 GTCGGCTGAGCGCCCGCACGCTCGTTTCGAGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GT
* * **
21375734 CTAAGCCCCAG-CCAGACCGATGGTTGTGG
129 CTAAG-ACCAGACCAGACCGAGGGTTACGG
** *
21375763 CAGCGGGACCGGCAGCACACAGAGGGGGACCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCT
1 -AGCAAGACCGGCAGCACACAGAGGGGGACCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCT-T
** * *
21375828 GGTCGGCTGAGCATCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
64 GGTCGGCTGAGCGCCCGCACGCTCGTTTCGAGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
21375893 CTAAG
129 CTAAG
21375898 GGTTTGAGCC
Statistics
Matches: 246, Mismatches: 37, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
156 6 0.02
157 100 0.41
158 40 0.16
159 96 0.39
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
AGCAAGACCGGCAGCACACAGAGGGGGACCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTGG
TCGGCTGAGCGCCCGCACGCTCGTTTCGAGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGACCAGACCAGACCGAGGGTTACGG
Found at i:21379976 original size:117 final size:117
Alignment explanation
Indices: 21379770--21379998 Score: 352
Period size: 117 Copynumber: 2.0 Consensus size: 117
21379760 GAGACCGGGC
* * *** * * *
21379770 CGATCCCCAGCTTGCTCATTCTGCCTTTCTGGCCAGCTAAGCGCCTGCATGCCCGTTTCATGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCAGCTAAGCACCCGCATACCCGTTTCATGGGT
*
21379835 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACTAGGT
66 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGACTAGGT
*
21379887 CGATCCCCAGCTTGCGCATTCTGCCTCTCCAACC-GACTAAGCACCCGCATACCCGTTTCGTGGG
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCAG-CTAAGCACCCGCATACCCGTTTCATGGG
21379951 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGAC
65 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGAC
21379999 CGAGGGTTGT
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
116 1 0.01
117 100 0.99
ACGTcount: A:0.18, C:0.31, G:0.24, T:0.27
Consensus pattern (117 bp):
CGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCAGCTAAGCACCCGCATACCCGTTTCATGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGACTAGGT
Found at i:21380312 original size:26 final size:26
Alignment explanation
Indices: 21380275--21380327 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21380265 GTTAACTTAG
*
21380275 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
*
21380301 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
21380327 G
1 G
21380328 ATCGGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:21380488 original size:26 final size:26
Alignment explanation
Indices: 21380459--21380511 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21380449 GTTGGCTTAG
*
21380459 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
21380485 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21380511 G
1 G
21380512 AGTTTGAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21381218 original size:26 final size:26
Alignment explanation
Indices: 21381182--21381232 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
21381172 TGACTTATTC
*
21381182 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
* **
21381208 ATACGAAGTTCTTTTCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
21381233 ATCGGACCGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:21382276 original size:26 final size:27
Alignment explanation
Indices: 21382246--21382299 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
21382236 GTTGACTTAG
21382246 GCATACGGA-GTTCATCCCCAGTCTAA
1 GCATACGGATGTTCATCCCCAGTCTAA
*
21382272 GCATACGGATGTTCATTCCCAGTCTAA
1 GCATACGGATGTTCATCCCCAGTCTAA
21382299 G
1 G
21382300 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
GCATACGGATGTTCATCCCCAGTCTAA
Found at i:21384082 original size:26 final size:26
Alignment explanation
Indices: 21384046--21384096 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21384036 GTTGACTTAG
*
21384046 GCATATGGAGTTCA-TCCCTAGTCTAT
1 GCATACGGAGTTCATTCCC-AGTCTAT
21384072 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
21384097 AGATCAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:21385313 original size:26 final size:26
Alignment explanation
Indices: 21385277--21385329 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21385267 GTTAACTTAG
*
21385277 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
21385303 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21385329 G
1 G
21385330 ATTGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21390919 original size:160 final size:159
Alignment explanation
Indices: 21390418--21390991 Score: 561
Period size: 159 Copynumber: 3.6 Consensus size: 159
21390408 GATCGTGACA
* * * ** * *
21390418 CCCGACTTGCGCATTCTACCTCTCTGATTGGCTGAGTGCCCGCACGCCCGTTTCATTGGTTGGCT
1 CCCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCT
* * * *
21390483 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTATGGCAGCGGGACCG
66 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCTGGACCG
* * *
21390548 ACAGCACACAGAGGGGGACTG-GGCTGATC
131 ACAGCACGCAGAGGGGGACCGAGTC-GATC
* * * * * * * * * *
21390577 CTCGGCTTGCGCATTATGCCTCTTCGGCCGACTCAGCTCCCGCACGCTCGTTTCGTGGGTTGACT
1 CCCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCT
* ** * * *
21390642 TAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTCTGGTAG-TAGGA
66 TAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTATGGCAGCT-GGA
* * *
21390704 TCGACAGCACGTA-AGGGGGGA-CAAGGTCGAT-
128 CCGACAGCACGCAGA-GGGGGACCGA-GTCGATC
* * *
21390735 CCCTAGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGC
1 CCCGA-CTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGC
* * *
21390800 TTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCCGGACCGAGGGTTGTGGCAGCTGGAC
65 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAA-CCGGACCGAGGGTTATGGCAGCTGGAC
21390865 CGACAGCACGCAGAGGGGGACCGAGTCGATC
129 CGACAGCACGCAGAGGGGGACCGAGTCGATC
** * * * * ** **
21390896 CCCGACTTATGCATTATGCCTCTCCGATCGGCTTAGCACCCG-AGCGCTCGTTTTGTGGGGAGGC
1 CCCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCA-CGCCCGTTTCATGGGTTGGC
*
21390960 TTATGCATACGGAGTTCATTCCATGTCTAAGC
65 TTAGGCATACGGAGTTCATTCCATGTCTAAGC
21390992 ATACGAAGTT
Statistics
Matches: 329, Mismatches: 71, Indels: 29
0.77 0.17 0.07
Matches are distributed among these distances:
158 8 0.02
159 186 0.57
160 127 0.39
161 8 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
CCCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCTGGACCG
ACAGCACGCAGAGGGGGACCGAGTCGATC
Found at i:21391001 original size:26 final size:26
Alignment explanation
Indices: 21390964--21391016 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21390954 GGAGGCTTAT
*
21390964 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
21390990 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21391016 G
1 G
21391017 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21391201 original size:26 final size:27
Alignment explanation
Indices: 21391148--21391201 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
21391138 GTTGACTTAC
21391148 GCATACGGAGTTCATCCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCCAGTCTAA
*
21391175 GCATACGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCCCCCAGTCTAA
21391201 G
1 G
21391202 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (27 bp):
GCATACGGAGTTCATCCCCCAGTCTAA
Found at i:21391326 original size:185 final size:182
Alignment explanation
Indices: 21390838--21391360 Score: 498
Period size: 185 Copynumber: 2.8 Consensus size: 182
21390828 AAGCCCCAAC
* * * ** * * * *
21390838 CCGGACCGAGGGTTGTGGCAGCTGGACCGACAGCACGCAGAGGGGGACCGAGTCGATCCCCGACT
1 CCGGACCGACGGTTGCGGCTGCAAGATCGACAGCACG-A-AGGGGGACCGGGCCGATCCCCGGCT
* * ** *
21390903 TATGCATTATGCCTCTCCGATCGGCTTAGCA-CCCGAGCGCTCGTTTTGTGGGGAGGCTTATGCA
64 TATGCATTCTGCCTCTCCGATCGGCTGAGCATCCC-A-CGCTCGTTTTGTGGGTTGGCTTACGCA
*
21390967 TACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
127 TACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
* * * * * ** *
21391023 CTGGACCGAGGGTTGCGGCTGTAGGATCGACAGCACGTAGGTGGGATTGGGCTGATCCCCGGCTT
1 CCGGACCGACGGTTGCGGCTGCAAGATCGACAGCACGAAGG-GGGACCGGGCCGATCCCCGGCTT
* * * * * * * *
21391088 GTGCATCCTGCCACT-CTAGTCGACTGAACATCCGCACGCTCGTTTCGTGGGTTGACTTACGCAT
65 ATGCATTCTGCCTCTCCGA-TCGGCTGAGCATCC-CACGCTCGTTTTGTGGGTTGGCTTACGCAT
* *
21391152 ACGGAGTTCATCCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
128 ACGGAGTTCAT--CCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
* ** *
21391208 CCGGACTGACGGTTGCGG-TAGCAAGATCGGTAGCTA-GCAAGGGGGACCGGGCCGATCCCTGGC
1 CCGGACCGACGGTTGCGGCT-GCAAGATCGACAGC-ACG-AAGGGGGACCGGGCCGATCCCCGGC
* * * * *
21391271 TTATGCATTCTGCCTCTCCGACCGGCTGAGCATCCACACGCCCGTTTTATGGGTTGGCTTAGGTA
63 TTATGCATTCTGCCTCTCCGATCGGCTGAGCATCC-CACGCTCGTTTTGTGGGTTGGCTTACGCA
* *
21391336 TAGGGAGTTCATTCCATGTCTAAGC
127 TACGGAGTTCATCCCATGTCTAAGC
21391361 CCCAGCTGGA
Statistics
Matches: 270, Mismatches: 57, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
183 8 0.03
184 79 0.29
185 173 0.64
186 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (182 bp):
CCGGACCGACGGTTGCGGCTGCAAGATCGACAGCACGAAGGGGGACCGGGCCGATCCCCGGCTTA
TGCATTCTGCCTCTCCGATCGGCTGAGCATCCCACGCTCGTTTTGTGGGTTGGCTTACGCATACG
GAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
Found at i:21391476 original size:159 final size:159
Alignment explanation
Indices: 21391247--21391679 Score: 428
Period size: 159 Copynumber: 2.7 Consensus size: 159
21391237 GTAGCTAGCA
* * ** * *
21391247 AGGGGGACCGGGCCGATCCCTGGCTTATGCATTCTGCCTCTCCGACCGGCTGAGCATCC-ACACG
1 AGGGGGATCGGGCCGATCCC-AGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGA-ACG
* ** * * * * *
21391311 CCCGTTTTATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCGA
64 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATAGAACCGA
** * * **
21391375 GGGTTGTGGTAGCGGGA-CTGGTAGCACGCAG
129 GGGTTACGATAGCAGGATC-GACAGCACGCAG
* * **
21391406 AGGGGGATCGGGCCGATCCTCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCGAACGC
1 AGGGGGATCGGGCCGATCC-CAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGAACGC
* * *
21391471 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCGGATAGAACCGA
65 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGATAGAACCGA
*
21391534 GGGTTACGATAGCAGGATCGACAGCGCGCAG
129 GGGTTACGATAGCAGGATCGACAGCACGCAG
* * * * * * *
21391565 -GGGGAGATCGGGCCGGTCCCCAACTTGCACATTCTGCCTCTCCGGTAGGTTGAGCACCCGCACG
1 AGGGG-GATCGGGCCGAT-CCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGAACG
* *
21391629 TTCGTTTCGTGGGGTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
21391680 TATGTAGTTC
Statistics
Matches: 223, Mismatches: 42, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
158 8 0.04
159 208 0.93
160 7 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
AGGGGGATCGGGCCGATCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGAACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATAGAACCGAGG
GTTACGATAGCAGGATCGACAGCACGCAG
Found at i:21391888 original size:196 final size:197
Alignment explanation
Indices: 21391547--21391921 Score: 459
Period size: 196 Copynumber: 1.9 Consensus size: 197
21391537 TTACGATAGC
* * * * **
21391547 AGGATCGACAGCGCGCAGGGGGAGATCGGGCCGGTCCCCAACTTGCACATTCTGCCTCTCCGGTA
1 AGGATCGACAACACACAGGGGGAGATCGGGCCGATCCCCAACTTGCACATTCTGCCTCTCCGACA
* * * * * *
21391612 GGTTGAGCACCCGCACGTTCGTTTCGTGGGGTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GGCTGAGCACCCGAACGCTCGTTTCATGGGGTGACTTAGGCATACGGAGTTCATGCCATGTCTAA
* *
21391677 GCATATGTAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGACCAGCA
131 GCATAAGTAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGACCAGCA
21391742 GT
196 GT
* ** * * *
21391744 AGGATCGACAACACACAGGGGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTTCGACC
1 AGGATCGACAACACACAGGGGGAGATCGGGCCGATCCCCAACTTGCACATTCTGCCTCTCCGACA
* * * * *
21391808 GGCTGAGCGCCCGAATGCTCGTTTTATGGGTTGACTTAGGCATATGGAGTTCATCGCCA-GTCTA
66 GGCTGAGCACCCGAACGCTCGTTTCATGGGGTGACTTAGGCATACGGAGTTCAT-GCCATGTCTA
* * *
21391872 AGCATACAGT-GTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTGC
130 AGCATA-AGTAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
21391922 GACAGCAAGA
Statistics
Matches: 148, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
196 113 0.76
197 35 0.24
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (197 bp):
AGGATCGACAACACACAGGGGGAGATCGGGCCGATCCCCAACTTGCACATTCTGCCTCTCCGACA
GGCTGAGCACCCGAACGCTCGTTTCATGGGGTGACTTAGGCATACGGAGTTCATGCCATGTCTAA
GCATAAGTAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGACCAGCA
GT
Found at i:21392024 original size:698 final size:683
Alignment explanation
Indices: 21390619--21392213 Score: 1568
Period size: 698 Copynumber: 2.3 Consensus size: 683
21390609 TCAGCTCCCG
* * * ** **
21390619 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAG
1 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAG
* * ** * ** * *
21390682 ACCGAGGGTTCTGGTAGTAGGATCGACAGCACGTAAG-GGGGGACAAGGTCGATCC-CTAGCTTG
64 ACCGAGGGTTGTGGCAGCGGGACCG--A-C-CGTAAGAGGGGGACCGGGCCGATCCTCGA-CTTG
* * * * * * * * *
21390745 CGCATTCTGCCTCTCCAACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTATGCATAG
124 CGCATTATGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATAC
* ** ** ** * ** ** * * *
21390810 GGAGTTCATTCCATGTCTAAGCCCCAACCCGGACCGAGGGTTGTGGCAGCTGGACCGACAGCACG
189 AGAGTTCATTCCATGTCTAAGATCGGA-TAGAACCGAGGGTTACGATAGCAGGATCGACAGCGCG
* * * * * *** *
21390875 CAGAGGGG-GACCGAGTCGATCCCCGACTTATGCATTATGCCTCTCCGATCGGCTTAGCACCCGA
253 CAG-GGGGAGATCGGGCCGGTCCCCAACTTGCACATTATGCCTCTCCGATAGGCTTAGCACCCGA
* *
21390939 GCGCTCGTTTTGTGGGGAGGCTTATGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCA
317 GCGCTCGTTTCGTGGGGAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCA
* ** * * ** *
21391004 TTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCTGTAGGATCGACAGCACGTAGGTGGGA
382 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAACACACAGGGGGGA
* * * * * * *
21391069 TTGGGCTGATCCCCGGCTTGTGCATCCTGCCACTCTAGTCGACTGAACATCCGCACGCTCGTTTC
447 TCGGGCCGATCCCCGGCTTGCGCATCCTGCCACTCGAGCCGACTGAACACCCGAACGCTCGTTTC
* *
21391134 GTGGGTTGACTTACGCATACGGAGTTCATCCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
512 ATGGGTTGACTTACGCATACGGAGTTCATCCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT
* * ** *
21391199 AAGATTGGACCGGACTGACGGTTGCGGTAGCAAGATCGGTAGCTAGCAAGGGGGACCGGGCCGAT
577 AAGATCGGACCAGACTGACGGTTGCGACAGCAAGATCGGTAGCTAGCAAGGGGGACCGAGCCGAT
* *
21391264 CCCTGGCTTATGCATTCTGCCTCTCCGACCGGCTGAGCATCCA
642 CCCTGGCTTACGCATTCTGCCTCTCCGACCGGCGGAGCAT-CA
* * **
21391307 CACGCCCGTTTTATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGAC
1 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
* * * *
21391372 CGAGGGTTGTGGTAGCGGGACTGGTAGCACG-CAGAGGGGGATCGGGCCGATCCTC-AGCTTGCG
66 CGAGGGTTGTGGCAGCGGGAC-CG-A-C-CGTAAGAGGGGGACCGGGCCGATCCTCGA-CTTGCG
* * *
21391435 CATTATGCCTCTCCGATCGGCTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
126 CATTATGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAG
21391500 AGTTCATTCC-TAGTCTAAGATCGGATAGAACCGAGGGTTACGATAGCAGGATCGACAGCGCGCA
191 AGTTCATTCCAT-GTCTAAGATCGGATAGAACCGAGGGTTACGATAGCAGGATCGACAGCGCGCA
* *
21391564 GGGGGAGATCGGGCCGGTCCCCAACTTGCACATTCTGCCTCTCCGGTAGG-TTGAGCACCCGCA-
255 GGGGGAGATCGGGCCGGTCCCCAACTTGCACATTATGCCTCTCCGATAGGCTT-AGCACCCG-AG
* * * *
21391627 CGTTCGTTTCGTGGGGTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGTAGTTCAT
318 CGCTCGTTTCGTGGGGAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCAT
*
21391692 TCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGACCAGCAGTAGGATCGACAACA
383 TCCCAGTCTAAGATCAGACCAGACCGAGGGTT------GC--G----GCAGTAGGATCGACAACA
* * * * *
21391757 CACAGGGGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTTCGA-CCGGCTGAGCGCCC
436 CACA-GGGGGGATCGGGCCGATCCCCGGCTTGCGCATCCTGCCAC-TCGAGCCGACTGAACACCC
* * * * * *
21391820 GAATGCTCGTTTTATGGGTTGACTTAGGCATATGGAGTTCAT-CGCCAGTCTAAGCATACAGTGT
499 GAACGCTCGTTTCATGGGTTGACTTACGCATACGGAGTTCATCCCCCAGTCTAAGCATACAGAGT
* * *
21391884 TCATTCCCAGTCTAAGATCGGACTAGA-TCGAGGGTTGCGACAGCAAGATCGGTAGC-ACGCAGG
564 TCATTCCCAGTCTAAGATCGGACCAGACT-GACGGTTGCGACAGCAAGATCGGTAGCTA-GCAAG
* *** * *
21391947 GGGGACCGAGCCGAT-CCTCGGCTTACGTATTCTGCCTCTCCGGTTGGCAGGGCGCAT-G
627 GGGGACCGAGCCGATCCCT-GGCTTACGCATTCTGCCTCTCCGACCGGC--GGAGCATCA
* ** *
21392005 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGCCAGAT
1 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
* * * * * * *
21392070 TGAGGGTTGTGGCAGTGGGACCGACGGTAAGAGGGGGACCTGGTCGATCGTCGACTTGCGCATTC
66 CGAGGGTTGTGGCAGCGGGACCGACCGTAAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTA
* * * ** *
21392135 TGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGTTTAGGCATTCAGAGTTC
131 TGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
21392200 ATTCCATGTCTAAG
196 ATTCCATGTCTAAG
21392214 CATACGGAGT
Statistics
Matches: 739, Mismatches: 137, Indels: 55
0.79 0.15 0.06
Matches are distributed among these distances:
686 6 0.01
687 164 0.22
688 165 0.22
689 5 0.01
693 2 0.00
694 1 0.00
695 99 0.13
696 3 0.00
697 6 0.01
698 184 0.25
699 82 0.11
700 22 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (683 bp):
CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
CGAGGGTTGTGGCAGCGGGACCGACCGTAAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTA
TGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
ATTCCATGTCTAAGATCGGATAGAACCGAGGGTTACGATAGCAGGATCGACAGCGCGCAGGGGGA
GATCGGGCCGGTCCCCAACTTGCACATTATGCCTCTCCGATAGGCTTAGCACCCGAGCGCTCGTT
TCGTGGGGAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTC
TAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAACACACAGGGGGGATCGGGCCGA
TCCCCGGCTTGCGCATCCTGCCACTCGAGCCGACTGAACACCCGAACGCTCGTTTCATGGGTTGA
CTTACGCATACGGAGTTCATCCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACTGACGGTTGCGACAGCAAGATCGGTAGCTAGCAAGGGGGACCGAGCCGATCCCTGGCTT
ACGCATTCTGCCTCTCCGACCGGCGGAGCATCA
Found at i:21393451 original size:26 final size:26
Alignment explanation
Indices: 21393415--21393467 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21393405 GTGAATGCCC
* *
21393415 GCATACGGAGTTGATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
21393441 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
21393467 G
1 G
21393468 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:21393661 original size:26 final size:26
Alignment explanation
Indices: 21393611--21393663 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21393601 GTTGACTTAG
* *
21393611 GCATACAGATTTCATCCCCTATCCAA
1 GCATACAGAGTTCATCCCATATCCAA
21393637 GCATACAGAGTTCATTCCCAT-TCCAA
1 GCATACAGAGTTCA-TCCCATATCCAA
21393663 G
1 G
21393664 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.32, G:0.11, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCATATCCAA
Found at i:21394280 original size:688 final size:669
Alignment explanation
Indices: 21393310--21394578 Score: 1436
Period size: 688 Copynumber: 1.9 Consensus size: 669
21393300 TAAGGGTTGC
* * * * * * * * *
21393310 AGTAGTAGGATCGATAGCACGTAGGGGGGATCGGGTCGGACCCTGGCTTATGCATTCTACCTTTC
1 AGTAGCAGGATCAACAGCACGTAGGGGGGACCAGGCCGGACCCCGGCTTACGCATTCTACCTCTC
* * *
21393375 CGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGAATGCCCGCATACGGAGTTGATTCCATGTCTA
66 CGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGAATGCACGCATAAGGAGTTCATTCCATGTCTA
** * * * * *
21393440 AGCATACGGAGTTCATTCCAAGTCTAAGATTGGACTGGATCGAGGGTTGCGACAGCAAGACTAGT
131 AGCATACAAAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAAGACCAGC
* *
21393505 AGCAGGATCGACAGCACGAAGGGGGAGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCA
196 AGCAGGATCGACAGCACGAAGGGGGAGACCGGGCCGATCCCCGGCTTACACATTCTACCTCTCCA
*
21393570 GCTAGCTGAACGTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGATTTCATCCCC-TATC
261 GCTAGCTGAACGTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAT-TC
* * * *
21393634 CAAGCATAC-AGAGTTCATTCCCATTCCAAGATCAGACCAGACCGAGGGTTG-TGACAGCAGGAT
325 CAAGCATACGA-AGTTCATTCCCAATCCAAGATCAGACCAGACCAAGGGTTGCAG-CAGCAAGAT
* * * * * * ** *
21393697 CGACAGCACGTAGGGGGGACCGAG-TCGA-TCCTCAACTTGCGTATTCTACGTCTCCGGCCGGTT
388 CGACAGCACGCACGAGAGACCGGGCT-GATTCC-CAACTTACACATTCTACCTCTCCGGCCGGTT
* *
21393760 GAGCGCCCCCACGACCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGCCC
451 GAGCGCCCCCACGACCATTTCGTGGGTTGGCTTAGGCACAGGGAGTTCATCCCATGTCTAAGCCC
** ** * * * *
21393825 CAGCCAGACCGAGGTTTGTGGCAGTGGGATCGACAGCATGCAGAGGGGGACTGGGCTGATCCCCG
516 CAGCCAGACCGAGGGCTGTGGCAACGGGACCGACAACACGCAGAGGGGAACTGGGCTGATCCCCG
21393890 GCTTGATTATTATGCCTCTCCGACCGGCTCAGTGCTCGAACGCTCATTTCGTGGGTTGACTTAGG
581 GCTTGATTATTATGCCTCTCCGACCGGCTCAGTGCTCGAACGCTCATTTCGTGGGTTGACTTAGG
21393955 CGTATAGAGTTCATTCCCAGTCTA
646 CGTATAGAGTTCATTCCCAGTCTA
* * *
21393979 AGTAGCAGGATCAACAGCACGTAGGGTGGGACCAGGCCGGTCCCCGGCTTGCGCATTCTGCCTCT
1 AGTAGCAGGATCAACAGCACGTAGGG-GGGACCAGGCCGGACCCCGGCTTACGCATTCTACCTCT
* ** *
21394044 CCGACTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAT
65 CCGACCGGCTGAGTGCCCGCACGCTCGTTTCGT-GAAT-GC--ACGCATAAGGAGTTCATTCCAT
* * * *
21394109 GTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGA
126 GTCTAAGCATACAAAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAAGA
* * * * * * *
21394174 CCAGCAGCAGGATTGGA-AGCATGTAGGGTTG-GACCTGGCCGATCCCTGGCTTACGCATTCTAC
191 CCAGCAGCAGGA-TCGACAGCACGAAGGG-GGAGACCGGGCCGATCCCCGGCTTACACATTCTAC
** * *
21394237 CTCTCCGATCGACCTCTCTGACCGACTGAGCTCCTGTACGCTCGTTTCATGGGTTGACTTATGCA
254 CTCTCC-A--G--CTAGCTGA---AC---G-T-C-GCACGCTCGTTTCATGGGTTGACTTAGGCA
* ** * ** *
21394302 TACGGAGTTCATCCCCATTTTAAGCATACGAAGTTCATTCCCAATCTAAGATTGGACCGGACCAA
305 TACAGAGTTCATCCCCATTCCAAGCATACGAAGTTCATTCCCAATCCAAGATCAGACCAGACCAA
* * ** *
21394367 GGGTTGCAGTAGCAAGATCGACAGCACGCACGAGAGATCGGGCTGATTCCCGGCTTACACATTTT
370 GGGTTGCAGCAGCAAGATCGACAGCACGCACGAGAGACCGGGCTGATTCCCAACTTACACATTCT
* * * * * * *
21394432 GCCTCTCCGGTCGGTTGAGCTCCCGCACGCCCATTTTGTGGGTTTGCTTAGGCACAGGGAGTTCA
435 ACCTCTCCGGCCGGTTGAGCGCCCCCACGACCATTTCGTGGGTTGGCTTAGGCACAGGGAGTTCA
* * * * *
21394497 TTCCATGTCTAAGCCCCAGCCGGACCGTGGGCTGTGGCAACGGGACCGGCAACACGTAGAGGGGA
500 TCCCATGTCTAAGCCCCAGCCAGACCGAGGGCTGTGGCAACGGGACCGACAACACGCAGAGGGGA
21394562 ACTGGGCTGATCCCCGG
565 ACTGGGCTGATCCCCGG
21394579 TTTACGCATT
Statistics
Matches: 483, Mismatches: 91, Indels: 33
0.80 0.15 0.05
Matches are distributed among these distances:
669 23 0.05
670 61 0.13
671 2 0.00
672 2 0.00
674 126 0.26
675 5 0.01
677 1 0.00
679 6 0.01
682 2 0.00
685 1 0.00
686 1 0.00
687 1 0.00
688 245 0.51
689 7 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (669 bp):
AGTAGCAGGATCAACAGCACGTAGGGGGGACCAGGCCGGACCCCGGCTTACGCATTCTACCTCTC
CGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGAATGCACGCATAAGGAGTTCATTCCATGTCTA
AGCATACAAAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAAGACCAGC
AGCAGGATCGACAGCACGAAGGGGGAGACCGGGCCGATCCCCGGCTTACACATTCTACCTCTCCA
GCTAGCTGAACGTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCATTCC
AAGCATACGAAGTTCATTCCCAATCCAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGA
CAGCACGCACGAGAGACCGGGCTGATTCCCAACTTACACATTCTACCTCTCCGGCCGGTTGAGCG
CCCCCACGACCATTTCGTGGGTTGGCTTAGGCACAGGGAGTTCATCCCATGTCTAAGCCCCAGCC
AGACCGAGGGCTGTGGCAACGGGACCGACAACACGCAGAGGGGAACTGGGCTGATCCCCGGCTTG
ATTATTATGCCTCTCCGACCGGCTCAGTGCTCGAACGCTCATTTCGTGGGTTGACTTAGGCGTAT
AGAGTTCATTCCCAGTCTA
Found at i:21394351 original size:26 final size:26
Alignment explanation
Indices: 21394299--21394351 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21394289 GTTGACTTAT
* * *
21394299 GCATACGGAGTTCATCCCCATTTTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
21394325 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
21394351 G
1 G
21394352 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:21394678 original size:26 final size:26
Alignment explanation
Indices: 21394642--21394694 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21394632 GTTGGCTTAG
21394642 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21394668 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21394694 G
1 G
21394695 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21395411 original size:26 final size:26
Alignment explanation
Indices: 21395365--21395415 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21395355 TGACTTAGGT
*
21395365 ATACGAAGTTCATCTCTAGTCTAAGC
1 ATACGAAGTTCATCTCCAGTCTAAGC
*
21395391 ATACGGAGTTCAT-TCCCAGTCTAAG
1 ATACGAAGTTCATCT-CCAGTCTAAG
21395416 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATCTCCAGTCTAAGC
Found at i:21396052 original size:26 final size:26
Alignment explanation
Indices: 21396022--21396074 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21396012 GTTGACTTAG
21396022 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
21396048 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
21396074 G
1 G
21396075 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:21396339 original size:343 final size:340
Alignment explanation
Indices: 21395712--21396712 Score: 1320
Period size: 343 Copynumber: 2.9 Consensus size: 340
21395702 TTAGGCATTT
** ** * * *
21395712 GGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGGTAATAGGATCGATAGCGCGC
1 GGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGCGACAACAGGATCGACAGCACGC
* * * * * * *
21395777 AGGGGGGTCGGGTCGATCTTCGGTTTACGTATTCTACCTCTTCAGTCAGCTGAGTGCCCGTACAC
65 AGGGGGATCGGGTCGATCCTCGGCTTACGTATTCTGCCTC-TCCGTCGGCTGAGTGCCCGCACAC
* * *
21395842 TCGTTTTGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGGCCCAGCCAGACTGAAG
129 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCGGACTGAAG
21395907 GTTGTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGGTCGATCCCTGGCTTGCGTATTCTA
194 GTTGTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGGTCGATCCCTGGCTTGCGTATTCTA
*
21395972 CCTCTCTGACTGGCTGAACGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
259 CCTCTCTGACTGGCTGAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
21396037 CCCCAGTCTAAGCATAC
324 CCCCAGTCTAAGCATAC
* * *
21396054 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCAGGATCGGCAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGACAACAGGATCGACAGCACGC
* * * *
21396119 AGAGGGGATCGGGTCGATCCTCGGCTTGCATATTCTGCCTCTCCGGCTGGCTGGGTGCCCGCACA
65 AG-GGGGATCGGGTCGATCCTCGGCTTACGTATTCTGCCTCTCCGTC-GGCTGAGTGCCCGCACA
* *
21396184 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAACCGGACTGAA
128 CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCGGACTGAA
* * * * **
21396249 GGTTGTGGTAACGGGACTGGCAACACGCAGAGAGGGACCGGGCCGATCCCTGGCTTATGTATTCT
193 GGTTGTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGGTCGATCCCTGGCTTGCGTATTCT
** * * *
21396314 ACCTCTCTGACTGGCTGAGCGCCCGTACGCTCATTTCGTCGATTGACTTAGGCATACGGAGTTCA
258 ACCTCTCTGACTGGCTGAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
*
21396379 TCCCTAGTCTAAGCATAC
323 TCCCCAGTCTAAGCATAC
* * * * * * *
21396397 AGAGTTCATTACCAATCTAAGATCGGATCGGACCGAGGGTTGCGACAACAAGATCGACAACACAC
1 GGAGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGGTTGCGACAACAGGATCGACAGCACGC
* * * * * * * *
21396462 AGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCAATCGACTGAGTGCCCGCACG
65 A-GGGGGATCGGGTCGATCCTCGGCTTACGTATTCTGCCTCTCC-GTCGGCTGAGTGCCCGCACA
* * * *
21396527 CTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATTGAA
128 CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCGGACTGAA
* *
21396592 GGTTGTGGCAACGGGACCGACAGCACGCAGAGAGGGACCGGGTCGATCCCTGGCTTGCGAATTCT
193 GGTTGTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGGTCGATCCCTGGCTTGCGTATTCT
* * * * * *
21396657 ACCTCTCTGACCGACTGAGCACCCGTAC-ATTCGTTTCATGGGTTGGCTTAAGCATA
258 ACCTCTCTGACTGGCTGAGCGCCCGTACGCTT-GTTTCATGGGTTGACTTAGGCATA
21396713 TGAAGTTTAT
Statistics
Matches: 566, Mismatches: 86, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
342 60 0.11
343 503 0.89
344 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (340 bp):
GGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGACAACAGGATCGACAGCACGCA
GGGGGATCGGGTCGATCCTCGGCTTACGTATTCTGCCTCTCCGTCGGCTGAGTGCCCGCACACTC
GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCGGACTGAAGGT
TGTGGCAACGGGACCGGCAGCACGCAGAGAGGGACCGGGTCGATCCCTGGCTTGCGTATTCTACC
TCTCTGACTGGCTGAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
CCAGTCTAAGCATAC
Found at i:21397152 original size:158 final size:159
Alignment explanation
Indices: 21396805--21397344 Score: 408
Period size: 159 Copynumber: 3.4 Consensus size: 159
21396795 GATCTCTGAT
* * * * * *
21396805 CGGCTCAGTGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTA
1 CGGCTCAATGCCCAAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTA
* * * ** ** * * * * * *
21396869 AGATCGGATCGGACCAAGGGTTACGGCAGTAGA-ATCGATAGCACGCA-AGGGGGATCGGGTCGA
66 AGACCAGACCAAACCAAGGGTTGTGGTAG-AGAGACCGAAAGCACGCAGAGAGGGACCGGGCCGA
* * * * * **
21396932 TCCCCAGCTTGCGCATTCTTCCTCTCTGGC
130 TCCCTAGCATACGCATTATGCCTCTCCAGC
* ** *** ** * *
21396962 CTGCGGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTA
1 CGGCTCAATGCCCAAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTA
* * ** * *
21397027 AGCCCAG-CCAAACCAAGGGTTGTGGTAGCGAGACCGGTAGCACGTAGAGGGGGACCGGGCCGAT
66 AGACCAGACCAAACCAAGGGTTGTGGTAGAGAGACCGAAAGCACGCAGAGAGGGACCGGGCCGAT
* *
21397091 CCCTAGCTTACGCATTATGCCTTTCC-GAC
131 CCCTAGCATACGCATTATGCCTCTCCAG-C
* * * *
21397120 CGGCTCAGTGCCCAAACGCTCGTTTCGTGGGTTGACTTAGTCATACGAAGTTTATTCCCA-GTCT
1 CGGCTCAATGCCCAAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATT-CCATGTCT
* * ** * * *
21397184 AAGATCAGACCGAACTGAGGGTTGTGGTAGAGGGATCGAAAGCACGCAGAGAGGGATCGGGCCGA
65 AAGACCAGACCAAACCAAGGGTTGTGGTAGAGAGACCGAAAGCACGCAGAGAGGGACCGGGCCGA
* * * * *
21397249 TCCTTGGCATATGCATTCTGCCTCTCCAGT
130 TCCCTAGCATACGCATTATGCCTCTCCAGC
* ** * * * *
21397279 CGGCTGAATGCCCGTACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 CGGCTCAATGCCCAAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTA
21397344 A
66 A
21397345 CCATATAGAG
Statistics
Matches: 299, Mismatches: 76, Indels: 14
0.77 0.20 0.04
Matches are distributed among these distances:
156 2 0.01
157 74 0.25
158 102 0.34
159 120 0.40
160 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
CGGCTCAATGCCCAAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTA
AGACCAGACCAAACCAAGGGTTGTGGTAGAGAGACCGAAAGCACGCAGAGAGGGACCGGGCCGAT
CCCTAGCATACGCATTATGCCTCTCCAGC
Found at i:21397545 original size:26 final size:26
Alignment explanation
Indices: 21397515--21397567 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21397505 GTTGACTTAG
*
21397515 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
21397541 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
21397567 G
1 G
21397568 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:21397725 original size:184 final size:182
Alignment explanation
Indices: 21397161--21397726 Score: 526
Period size: 196 Copynumber: 3.0 Consensus size: 182
21397151 TTGACTTAGT
* * ** **
21397161 CATACGAAGTTTATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAGAGGGATCGAAAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCG-ACTGAGGGTTACGACAGA-GGATCGAAAG
* * * * ** * *
21397226 CACGCAGAGAGGGATCGGGCCGATCCTTGGCATATGCATTCTGCCTCTCCAGTCGGCTGAATGCC
64 CACGCAG-GGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCC
*
21397291 CGTACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAC
128 CGTACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * *
21397346 CATA-TAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGTAGCAGGACCAGCA
1 CATACGA-AGTTCATTCCCAGTCTAAGATCGGA-CCGACTGAGGG-T----TA-C--G---A-CA
** * * *
21397410 GCAGGATCGACAA-CATACAGGGGGGATCGGGCTGATCCCCTGCTTGCGCATTCTGCCTCTCCGA
52 G-AGGATCGA-AAGCACGCAGGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGG
** * * * * * * *
21397474 TCAACTGAGCGCTCGTACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTC
115 TCGGCTGAGTGCCCGTACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTC
21397538 TAAG
179 TAAG
*
21397542 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGACAGTAGGATCGATAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCGGACC-GACTGAGGGTTACGACAG-AGGATCGAAAG
** * * *
21397607 CACGCAGGGGGGATCGAACTGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGTTGGGTGCCC
64 CACGCAGGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCC
* ** *
21397672 GTACACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
129 GTACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
21397726 C
1 C
21397727 CGCAGCCGGA
Statistics
Matches: 298, Mismatches: 62, Indels: 43
0.74 0.15 0.11
Matches are distributed among these distances:
183 4 0.01
184 105 0.35
185 34 0.11
186 3 0.01
188 1 0.00
190 2 0.01
191 2 0.01
193 1 0.00
195 2 0.01
196 123 0.41
197 18 0.06
198 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (182 bp):
CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGACTGAGGGTTACGACAGAGGATCGAAAGCA
CGCAGGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGT
ACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
Found at i:21399462 original size:158 final size:158
Alignment explanation
Indices: 21399171--21399623 Score: 545
Period size: 158 Copynumber: 2.9 Consensus size: 158
21399161 CAGTAGGACC
* * * *
21399171 AGCAGCAAGATTGGCAGCACGCAGGGGGGGACTAGGCCGATCCCTGGCTTGCGCATTCTGCCTCT
1 AGCAGCAAGATCGGCAGCACACA-GGGGGGACCAAGCCGATCCCTGGCTTGCGCATTCTGCCTCT
** * * *
21399236 -CGACCGGTTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
65 CCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * *
21399300 GTCTAAG-ATCAGATCAGGCCGAGGGTTAC-
130 GTCTAAGCACCAG-CCAGACCGAGGGTT-CT
* * * * *
21399329 GGTAGCAAGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
1 AGCAGCAAGATCGGCAGCACACAGGGGGGACCAAGCCGATCCCTGGCTTGCGCATTCTGCCTCTC
* * * *
21399394 CGGTCAGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCAT
66 CGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-
* *
21399458 GTCTAAGCCCCAGCCAGACCGATGGTTCT
130 GTCTAAGCACCAGCCAGACCGAGGGTTCT
** * * *
21399487 AGCAGCGGGACCGGTAGCACACAGAGGGGGACCAAGCCGATCCCTGACTTGCGCATTCTGCCTCT
1 AGCAGCAAGATCGGCAGCACACAG-GGGGGACCAAGCCGATCCCTGGCTTGCGCATTCTGCCTCT
** * *
21399552 CCGGTCGGCTGAGCATCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
65 CCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
21399617 GTCTAAG
130 GTCTAAG
21399624 GGTTTGAGCC
Statistics
Matches: 248, Mismatches: 41, Indels: 11
0.83 0.14 0.04
Matches are distributed among these distances:
157 41 0.17
158 104 0.42
159 100 0.40
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
AGCAGCAAGATCGGCAGCACACAGGGGGGACCAAGCCGATCCCTGGCTTGCGCATTCTGCCTCTC
CGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCACCAGCCAGACCGAGGGTTCT
Found at i:21403221 original size:24 final size:24
Alignment explanation
Indices: 21403194--21403255 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
21403184 CGAGAACTTG
*
21403194 TGGTCCACTGACCAACGTAGCTCA
1 TGGTCCACTGACCAACGCAGCTCA
* * *
21403218 TGGTTCACTAACCAATGCAGCTCA
1 TGGTCCACTGACCAACGCAGCTCA
21403242 TGGTCCACTGACCA
1 TGGTCCACTGACCA
21403256 TCTCGCTTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (24 bp):
TGGTCCACTGACCAACGCAGCTCA
Found at i:21405866 original size:26 final size:26
Alignment explanation
Indices: 21405830--21405882 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21405820 GTTGACTTAG
21405830 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
21405856 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21405882 G
1 G
21405883 ATTGAAAGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21406211 original size:26 final size:26
Alignment explanation
Indices: 21406173--21406225 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21406163 GTTGGCTTAG
*
21406173 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
21406199 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21406225 G
1 G
21406226 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21406907 original size:26 final size:27
Alignment explanation
Indices: 21406877--21406930 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
21406867 GTTGACTTAG
*
21406877 GCATACGGA-GTTCATCCCCAGTCTAA
1 GCATACGAATGTTCATCCCCAGTCTAA
*
21406903 GCATACGAATGTTCATTCCCAGTCTAA
1 GCATACGAATGTTCATCCCCAGTCTAA
21406930 G
1 G
21406931 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (27 bp):
GCATACGAATGTTCATCCCCAGTCTAA
Found at i:21407206 original size:158 final size:158
Alignment explanation
Indices: 21406903--21407405 Score: 397
Period size: 158 Copynumber: 3.2 Consensus size: 158
21406893 CCCAGTCTAA
* * ** * * * * * *
21406903 GCATACGAATGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGA-GTTCATTCCAAGTCTAAGCCCAGACCGGACCGAGGGTTACGACAGCAAGATCGAC
* * * * * * * * * * * * *
21406968 AGCACGAACGGGGGACCGGATCGATCCCCGGCTTGCGC-ATTCTGCCTCTTCGATCGGCTGAGCG
65 AGCACGCAGGGGGGACCGGGTCGATCCCAGACATGCACTA-TATGCCTCTCCGACCAGCTCAGTG
* **
21407032 CCCGCACGCTTATTTCGTGGGTTGGCTTAG
129 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
21407062 GCATAGGGAGATCATTCCAAGTC-AAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCGAGATCGGC
1 GCATACGGAGTTCATTCCAAGTCTAAG-CCCAGACCGGACCGAGGGTTACGACAGCAAGATCGAC
* * *
21407125 AGCACGCAGAGGGGGACCGGG-CTGATCCCAGGCTTG-AGTAATATGCCTCTCC-AGCCAGCTCA
65 AGCACGCAG-GGGGGACCGGGTC-GATCCCAGACATGCACT-ATATGCCTCTCCGA-CCAGCTCA
* **
21407187 GTGCCTGAACGCTCGTTTCGTGGGTTAACTTAG
126 GTGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * **
21407220 GCATACGAAGTTGATTCCCAGTCTAAGTTCAGACCGGACCGAGGGTTACGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGCCCAGACCGGACCGAGGGTTACGACAGCAAGATCGACA
* * * * * *
21407285 GCACGTAGGGGGGACCGGGTCGATCCCCGACATGCACTTTCTGCCTCTCCGATCAGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCAGACATGCACTATATGCCTCTCCGACCAGCTCAGTGCC
* *
21407350 CGTACGCTCGTTTCATGGGTTGGCTTAG
131 CGAACGCTCGTTTCGTGGGTTGGCTTAG
* * *
21407378 GCTTACGGAGTTCATTCCATGCCTAAGC
1 GCATACGGAGTTCATTCCAAGTCTAAGC
21407406 ATACAGAGTT
Statistics
Matches: 269, Mismatches: 64, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
157 37 0.14
158 184 0.68
159 48 0.18
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAAGTCTAAGCCCAGACCGGACCGAGGGTTACGACAGCAAGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCAGACATGCACTATATGCCTCTCCGACCAGCTCAGTGCC
CGAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:21408625 original size:26 final size:24
Alignment explanation
Indices: 21408585--21408662 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 24
21408575 GCTGAAAACT
*
21408585 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACAT-GAATGAACT-CGTATG
21408611 CTTAGACATGAAATGAACTTCGTATG
1 CTTAGACATG-AATGAAC-TCGTATG
21408637 CTTAGACATCGAATGAACTCGTATG
1 CTTAGACAT-GAATGAACTCGTATG
21408662 C
1 C
21408663 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
25 9 0.19
26 37 0.77
27 2 0.04
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (24 bp):
CTTAGACATGAATGAACTCGTATG
Found at i:21408935 original size:157 final size:152
Alignment explanation
Indices: 21408636--21408939 Score: 348
Period size: 157 Copynumber: 2.0 Consensus size: 152
21408626 AACTTCGTAT
*
21408636 GCTTAGACATCGAATGAACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGGCTCAACCG
1 GCTTAGACATCGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGGCTCAACCG
* * *
21408701 ACCGGAGAGGCAGAATGCAAGCTGGGGATCGAACCGGTCCCCTCTGTGTGCTACCGATCCACTGC
66 ACCGGAGAGGCAGAATGCAAGCTAGGGATCGAACCGATCCCCCCTGTGTGCTACCGATCCACTGC
21408766 CACAACCCTCGATCCAGCTAGG
131 CACAACCCTCGATCCAGCTAGG
* *
21408788 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACATCGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGA-GCGTG-GGG-GCTCA
*** * * * *
21408852 GTTGATCGGAGAGGCAGAATAAGGAAGGC-AGGGATCG-GCTCGATCCCCCCTCGTG-G-TGCCG
62 ACCGACCGGAGAGGCAGAAT--GCAA-GCTAGGGATCGAAC-CGATCCCCCCT-GTGTGCTACCG
* *
21408913 ATCCTGCTGCCATAACCCTCGATCCAG
122 ATCC-ACTGCCACAACCCTCGATCCAG
21408940 TCTGATCTTA
Statistics
Matches: 127, Mismatches: 15, Indels: 15
0.81 0.10 0.10
Matches are distributed among these distances:
152 20 0.16
153 29 0.23
154 3 0.02
155 21 0.17
156 9 0.07
157 40 0.31
158 5 0.04
ACGTcount: A:0.25, C:0.31, G:0.28, T:0.17
Consensus pattern (152 bp):
GCTTAGACATCGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGGCTCAACCG
ACCGGAGAGGCAGAATGCAAGCTAGGGATCGAACCGATCCCCCCTGTGTGCTACCGATCCACTGC
CACAACCCTCGATCCAGCTAGG
Found at i:21408975 original size:26 final size:26
Alignment explanation
Indices: 21408946--21408998 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21408936 CCAGTCTGAT
* *
21408946 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACCCCGTATG
* *
21408972 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAAACTGGGAATGAACCCCGTATG
21408998 C
1 C
21408999 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACCCCGTATG
Found at i:21409193 original size:26 final size:26
Alignment explanation
Indices: 21409155--21409207 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21409145 CCGGTTCGAT
21409155 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21409181 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
21409207 C
1 C
21409208 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21409434 original size:134 final size:136
Alignment explanation
Indices: 21409179--21409451 Score: 347
Period size: 134 Copynumber: 2.0 Consensus size: 136
21409169 GAACTCCATA
* * *
21409179 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGGGCGCTC
1 TGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATAAAACGAGCATGCAGGGCACTC
* * *
21409244 AGCCGGTCGGAGAGGCAGAATGTGCAAGCTGGGGACCAACTCGGTCCCCTCCTGCGTGCTGCCGA
66 AGACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCAACTCGGTCCCCTCCTGCGTGCTGCCGA
*
21409309 TCCTAC
131 TCCCAC
* * * *
21409315 TGCTTAGAC-TGGGAATGAACTCTATATGCCTAAGTCAACCCATAAAATGAGCGTTC-GGGCACT
1 TGCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCATAAAACGAGCATGCAGGGCACT
* * * **
21409378 GAGAC-GTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCC-CTCTGCGTGCTGCC
65 CAGACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCAACTCGGTCCCCTC-CTGCGTGCTGCC
*
21409441 GGTCCCAC
129 GATCCCAC
21409449 TGC
1 TGC
21409452 CACAACCCTC
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
133 1 0.01
134 59 0.50
135 10 0.08
136 48 0.41
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (136 bp):
TGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATAAAACGAGCATGCAGGGCACTC
AGACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCAACTCGGTCCCCTCCTGCGTGCTGCCGA
TCCCAC
Found at i:21409619 original size:158 final size:158
Alignment explanation
Indices: 21409316--21409603 Score: 364
Period size: 158 Copynumber: 1.8 Consensus size: 158
21409306 CGATCCTACT
* * * ** *
21409316 GCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCATAAAATGAGCGTTCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGAGCGGGCACTCAG
* * * * * *
21409381 ACGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGGTCC
66 ACGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCC
21409446 CACTGCCACAACCCTCGATCCTGCTGGG
131 CACTGCCACAACCCTCGATCCTGCTGGG
* * * *
21409474 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGAGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGAGCGGGCACTCA
* * * *
21409538 GTCGGTCGGAGAGGCAGAATGGGCAAGCCGGGGATCAGCCCAGTCTCCC-CTGCGTGCTATCGAT
65 GAC-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGAT
21409602 CC
129 CC
21409604 TGGTGCCATA
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
158 68 0.63
159 40 0.37
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGAGCGGGCACTCAG
ACGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCC
CACTGCCACAACCCTCGATCCTGCTGGG
Found at i:21409637 original size:158 final size:158
Alignment explanation
Indices: 21409316--21409652 Score: 349
Period size: 158 Copynumber: 2.1 Consensus size: 158
21409306 CGATCCTACT
* * * ** *
21409316 GCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCATAAAATGAGCGTTCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGAGCGGGCACTCAG
* * * * * *
21409381 ACGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGGTCC
66 ACGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCC
* * *
21409446 CACTGCCACAACCCTCGATCCTGCTGGG
131 CACTGCCACAACCCTCGATCCTGATCGA
* * * *
21409474 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGAGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGAGCGGGCACTCA
* * * *
21409538 GTCGGTCGGAGAGGCAGAATGGGCAAGCCGGGGATCAGCCCAGTCTCCC-CTGCGTGCTATCGAT
65 GAC-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGAT
*** *
21409602 CCTGGTGCCATAACCCTC-AGTCC-GATCCGA
129 CCCACTGCCACAACCCTCGA-TCCTGAT-CGA
* *
21409632 TCTTAGATTGGGAATGAACTC
1 GCTTAGACTGGGAATGAACTC
21409653 TGTATGCTTA
Statistics
Matches: 145, Mismatches: 29, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.03
158 101 0.70
159 40 0.28
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGAGCGGGCACTCAG
ACGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCC
CACTGCCACAACCCTCGATCCTGATCGA
Found at i:21409669 original size:26 final size:26
Alignment explanation
Indices: 21409633--21409685 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21409623 CCGATCCGAT
* *
21409633 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21409659 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21409685 C
1 C
21409686 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21410393 original size:26 final size:26
Alignment explanation
Indices: 21410355--21410407 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21410345 GGCTCAAACT
21410355 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
21410381 CTTAGACAT-GGAATGAACTTTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
21410407 C
1 C
21410408 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21410852 original size:25 final size:26
Alignment explanation
Indices: 21410824--21410875 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21410814 CCGGTTCGAT
21410824 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21410849 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21410875 C
1 C
21410876 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21411350 original size:156 final size:159
Alignment explanation
Indices: 21410998--21411361 Score: 364
Period size: 159 Copynumber: 2.3 Consensus size: 159
21410988 TCCTGCTACG
* * * * * * *
21410998 ACAACCCTCAGTCCAGTCCGATCTTAGACTGTGAATTAACTCCGTATGCCTAAGTCAACTCATGA
1 ACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * * * * *
21411063 AACGAGCGTTCGGGTACTGAGCCGGCTGGAGAGGCATAATGCACAAGCTGGGGATCGACCCGATC
66 AACGAGCGTGCGAGCACTCAGCCGGCTGGAGAGGCAGAATGCACAAGCCGGGGATAGACCCGATC
21411128 CCCCTCTGTATGCTGCCAGTCCCGCTGCC
131 CCCCTCTGTATGCTGCCAGTCCCGCTGCC
* * ** *
21411157 ACAACCCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 ACAACCCTCAGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * ** *
21411220 GAAATGGGTGTGCGAGCGCTCAGCCGGC-GGAGAGGCAGAATGCGTAAGCCGGGGATAGGCCC-A
64 GAAACGAGCGTGCGAGCACTCAGCCGGCTGGAGAGGCAGAATGCACAAGCCGGGGATAGACCCGA
* * * *
21411283 GTCCCCCT-T-TGTGCTGTC-GATCCTGCTGTC
129 -TCCCCCTCTGTATGCTGCCAG-TCCCGCTGCC
*
21411313 GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 ACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
21411362 TTAGATTGGA
Statistics
Matches: 163, Mismatches: 36, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
155 2 0.01
156 53 0.33
157 4 0.02
158 36 0.22
159 67 0.41
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
ACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AACGAGCGTGCGAGCACTCAGCCGGCTGGAGAGGCAGAATGCACAAGCCGGGGATAGACCCGATC
CCCCTCTGTATGCTGCCAGTCCCGCTGCC
Found at i:21411364 original size:26 final size:26
Alignment explanation
Indices: 21411335--21411387 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21411325 CCGGTCTGAT
21411335 CTTAGACTGGGA-ATGAACTCCGTATG
1 CTTAGA-TGGGAGATGAACTCCGTATG
*
21411361 CTTAGATTGGAGATGAACTCCGTATG
1 CTTAGATGGGAGATGAACTCCGTATG
21411387 C
1 C
21411388 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGAGATGAACTCCGTATG
Found at i:21412105 original size:26 final size:26
Alignment explanation
Indices: 21412067--21412119 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21412057 GGCTCAAACT
21412067 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21412093 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21412119 C
1 C
21412120 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21412438 original size:26 final size:26
Alignment explanation
Indices: 21412409--21412458 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
21412399 ATCCGATCTC
21412409 AGATT-AGGAATGAACTCCGTATGCTT
1 AGATTGAGG-ATGAACTCCGTATGCTT
21412435 AGATTGAGGATGAACTCCGTATGC
1 AGATTGAGGATGAACTCCGTATGC
21412459 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
AGATTGAGGATGAACTCCGTATGCTT
Found at i:21418666 original size:22 final size:22
Alignment explanation
Indices: 21418636--21418678 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
21418626 CCTTAGTCTT
21418636 GACAAATGCTTCGACCACCATC
1 GACAAATGCTTCGACCACCATC
*
21418658 GACACATGCTTCGACCACCAT
1 GACAAATGCTTCGACCACCAT
21418679 TAGCCCCCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.37, G:0.14, T:0.19
Consensus pattern (22 bp):
GACAAATGCTTCGACCACCATC
Found at i:21451239 original size:21 final size:21
Alignment explanation
Indices: 21451213--21451281 Score: 129
Period size: 21 Copynumber: 3.3 Consensus size: 21
21451203 CCTACAACTA
21451213 TCCCTGGTGCTCAAGCCTTGG
1 TCCCTGGTGCTCAAGCCTTGG
21451234 TCCCTGGTGCTCAAGCCTTGG
1 TCCCTGGTGCTCAAGCCTTGG
*
21451255 TCCCCGGTGCTCAAGCCTTGG
1 TCCCTGGTGCTCAAGCCTTGG
21451276 TCCCTG
1 TCCCTG
21451282 AAGCTTGGGC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.09, C:0.36, G:0.28, T:0.28
Consensus pattern (21 bp):
TCCCTGGTGCTCAAGCCTTGG
Found at i:21461363 original size:59 final size:59
Alignment explanation
Indices: 21461246--21461372 Score: 173
Period size: 59 Copynumber: 2.2 Consensus size: 59
21461236 TATGCACCTA
* * * *
21461246 CTGGACATGACCATCACACCAATTGTATACTTGTAGCTCCTACTCTTCGATACGCCCCT
1 CTGGACATGACCATCACACCAACTGCATACTTATAGCTCCTACTCTTCGATACACCCCT
* * * *
21461305 CTGGATATGACCATCGCACCAACTGCATGCTTATAGCTCCTACTCTTCGATGCACCCCT
1 CTGGACATGACCATCACACCAACTGCATACTTATAGCTCCTACTCTTCGATACACCCCT
*
21461364 TTGGACATG
1 CTGGACATG
21461373 GTGTTTAGGT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (59 bp):
CTGGACATGACCATCACACCAACTGCATACTTATAGCTCCTACTCTTCGATACACCCCT
Found at i:21487954 original size:181 final size:181
Alignment explanation
Indices: 21487542--21488260 Score: 715
Period size: 181 Copynumber: 4.0 Consensus size: 181
21487532 GAATCTTCAA
* ** * * *
21487542 AATATTAATAGATTAGTATTATTTTATTCTA-AATAATTTTGCATGAATAGAAATAATTGTTTTA
1 AATATTAATAAATTAGTATTATTTTATTC-AGAATAAGCTTGTATGAATAGAAACAATTATTTTA
* * ** * * * * * * *
21487606 TGACAAAATAGGAGGTCATAATGATTTGAACTAGATAATTGTTAAAATGGACATGACTATTTGAA
65 TAACAAAACAAAAGATCATAATAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA
* * * * * * * *
21487671 CTTGTTCGGCAAATATA-TTAATTTTTAAATCTCCTACCTATTAATTTTCAA
130 CTTGTTCAGAAAATAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAG
* * * *
21487722 AATATTCATAAATCAGTATTATTTTATTCAGAATAAACTTATATGAATAGAAACAATTATTTTAT
1 AATATTAATAAATTAGTATTATTTTATTCAGAATAAGCTTGTATGAATAGAAACAATTATTTTAT
* * * * *
21487787 AACAAAACAAAATATAATAACT-ATTTGAAATAAATAATTGTTCAAACAGTGATAACTATTTGAA
66 AACAAAACAAAAGATCATAA-TAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA
* * * * *
21487851 CTTGCTCAGTAAATAGATTTATTTTTTAAATCTTTTACTTATTTATTTTTGG
130 CTTGTTCAGAAAATAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAG
* * ***
21487903 AATATTAATAAATTAGTATTATTTTATTTCA-AATATGCTCGTATGAATAGAAACAATTGGATTA
1 AATATTAATAAATTAGTATTATTTTA-TTCAGAATAAGCTTGTATGAATAGAAACAATTATTTTA
* * * **
21487967 TGACAAAACTAAAGGTCATAACT-ATTTGAAATAGATAATTACTCAAATTA-TCATAACTATTTG
65 TAACAAAACAAAAGATCATAA-TAATTTGAAATAGATAATTGTTCAAA-TAGTCATAACTATTTG
* * * *
21488030 AA-TATGTTCAAAAAATAGATTTCTTTTTTAAAT-TTTTACTTATTAATTTCTAG
128 AACT-TGTTCAGAAAATAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAG
* *
21488083 AATATTAATAAATTTA-TATTATTTTATTCAGACTAAGCTTTTATGAATAGAAACAATTATTTTA
1 AATATTAATAAA-TTAGTATTATTTTATTCAGAATAAGCTTGTATGAATAGAAACAATTATTTTA
21488147 TGATA-AAAACAAAAGGA-CATAATAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTT
65 T-A-ACAAAACAAAA-GATCATAATAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTT
* * * * *
21488210 GAACTTGATC-GAAAAATAAAATCATTTTTTAAATCTCTTACTCATTAATTT
127 GAACTTGTTCAG-AAAATAGATTTATTTTTTAAATCTCTTACTTATTAATTT
21488261 CCAAATNNNN
Statistics
Matches: 441, Mismatches: 82, Indels: 30
0.80 0.15 0.05
Matches are distributed among these distances:
179 5 0.01
180 184 0.42
181 230 0.52
182 22 0.05
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (181 bp):
AATATTAATAAATTAGTATTATTTTATTCAGAATAAGCTTGTATGAATAGAAACAATTATTTTAT
AACAAAACAAAAGATCATAATAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC
TTGTTCAGAAAATAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAG
Found at i:21489883 original size:26 final size:26
Alignment explanation
Indices: 21489845--21489897 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21489835 GGCTGAAACT
*
21489845 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21489871 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21489897 C
1 C
21489898 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21490242 original size:159 final size:158
Alignment explanation
Indices: 21489978--21490340 Score: 385
Period size: 159 Copynumber: 2.3 Consensus size: 158
21489968 CTGCTACCGT
* * *
21489978 AACCCTCGGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
1 AACCCTCGGTCCGATCCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
* * * *
21490043 CGAGCGTTCGGGCACTGAGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATC-AGCCCGATCC
66 CGAGCGTTCGGGCACTCAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCC
21490107 CCCTCTGCGTGCTGTCGGTCCCATTGCCAC
130 CCC-CTGCGTGCTGTCGGTCCCATTGCCAC
** * * * *
21490137 AACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCTTATGCTTAAGCCAACCCATGAAT
1 AACCCTCGGTCCGATCCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
** * * *
21490202 C-AG-GTGTGCGGGTGCTCAGCTGGCCAGAGAGGTAGAATGCGCAAGCTGAGGATCGACTCGATC
66 CGAGCGT-T-CGGGCACTCAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATC
* ** *** * **
21490265 CCCCCTGCGTACTG-CTATCCTGCTACCGT
129 CCCCCTGCGTGCTGTCGGTCCCATTGCCAC
* *
21490294 AACCCTCGGTCCGGTCCGATCTTAGAC-TGTGAATGAACTCCGTATGC
1 AACCCTCGGTCCGATCCGAGCTTAGACATG-GAATGAACTCCGTATGC
21490341 TTAGATTGGG
Statistics
Matches: 167, Mismatches: 33, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
156 2 0.01
157 47 0.28
158 12 0.07
159 105 0.63
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
AACCCTCGGTCCGATCCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
CGAGCGTTCGGGCACTCAGCTGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCC
CCCTGCGTGCTGTCGGTCCCATTGCCAC
Found at i:21490343 original size:26 final size:26
Alignment explanation
Indices: 21490314--21490366 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21490304 CCGGTCCGAT
*
21490314 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21490340 CTTAGATTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21490366 C
1 C
21490367 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21490870 original size:26 final size:26
Alignment explanation
Indices: 21490829--21490881 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21490819 CTGGTCTGAT
21490829 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21490855 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
21490881 C
1 C
21490882 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21491601 original size:26 final size:26
Alignment explanation
Indices: 21491563--21491615 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21491553 GGCTCAAACT
21491563 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21491589 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
21491615 C
1 C
21491616 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21491938 original size:26 final size:26
Alignment explanation
Indices: 21491909--21491958 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21491899 ATCCGATCTC
*
21491909 AGATTGTGAATGAACTCCGTATGCTT
1 AGATTGAGAATGAACTCCGTATGCTT
*
21491935 AGATTGAGGATGAACTCCGTATGC
1 AGATTGAGAATGAACTCCGTATGC
21491959 CTAAGTCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
AGATTGAGAATGAACTCCGTATGCTT
Done.