Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 36 of 125
Found at i:7173734 original size:28 final size:28
Alignment explanation
Indices: 7173675--7173731 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
7173665 TACATATATT
* * *
7173675 AATACATAACAATAATAATAAATAATAA
1 AATACATAACAATAACAAAAAAAAATAA
*
7173703 AATACATAA-AATACCAAAAAAAAATAA
1 AATACATAACAATAACAAAAAAAAATAA
7173730 AA
1 AA
7173732 ATAATACAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 16 0.64
28 9 0.36
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (28 bp):
AATACATAACAATAACAAAAAAAAATAA
Found at i:7173911 original size:1 final size:1
Alignment explanation
Indices: 7173900--7173956 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
7173890 AACATTGTCA
* * * * * * *
7173900 TTTTTTATTTTTTTTTTGTTTTTTATGTTTTTTTTGTGTTTTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7173957 ACCAAAGCTC
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.04, C:0.00, G:0.09, T:0.88
Consensus pattern (1 bp):
T
Found at i:7173930 original size:20 final size:19
Alignment explanation
Indices: 7173900--7173955 Score: 85
Period size: 20 Copynumber: 2.9 Consensus size: 19
7173890 AACATTGTCA
*
7173900 TTTTTTATTTTTTTTTTGT
1 TTTTTTGTTTTTTTTTTGT
*
7173919 TTTTTATGTTTTTTTTGTGT
1 TTTTT-TGTTTTTTTTTTGT
7173939 TTTTTTGTTTTTTTTTT
1 TTTTTTGTTTTTTTTTT
7173956 TACCAAAGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.04, C:0.00, G:0.09, T:0.88
Consensus pattern (19 bp):
TTTTTTGTTTTTTTTTTGT
Found at i:7174056 original size:41 final size:41
Alignment explanation
Indices: 7173963--7174376 Score: 582
Period size: 41 Copynumber: 10.0 Consensus size: 41
7173953 TTTTACCAAA
* *
7173963 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATT
7174006 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
** * * *
7174047 GCTCCTCTAAACAGAAACACCACAACTTT-GAAAGTTAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
7174087 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAATAAATT
* *
7174129 GCTCCTCTAAACAGAGGTACCATGACTTT-GAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATT
* * *
7174170 GCTCCTCTAAACAAAGGCACCACGACTTTAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
7174211 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGATAAGTT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAA-ATAAATT
*
7174253 GCTCCTCTAAACAGAGGCACTACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATT
* *
7174295 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
7174336 GCTCCTCTAAATAGAGGCACCACGACTTT-GAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATT
7174377 ACTCATTGAC
Statistics
Matches: 332, Mismatches: 32, Indels: 16
0.87 0.08 0.04
Matches are distributed among these distances:
40 43 0.13
41 143 0.43
42 118 0.36
43 28 0.08
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
Found at i:7174270 original size:166 final size:163
Alignment explanation
Indices: 7173963--7174376 Score: 614
Period size: 166 Copynumber: 2.5 Consensus size: 163
7173953 TTTTACCAAA
*
7173963 GCTCCTCTAAACAGAGGCT-CAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACC
1 GCTCCTCTAAACAGAGG-TACCACGACTTTGA-AAA-ATAAATTGCTCCTCTAAACAGAGGCACC
* *
7174027 ACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAAACACCACAACTTTGAAAGTTAATTGCTCC
63 ACGACTTT-GAAAGTAAATTGCTCCTCTAAACAGAAACACCACAACTTTGAAAGATAATTGCTCC
7174092 TCTAAACAGAGGCACCACGACTTTGAAAAAATAAATT
127 TCTAAACAGAGGCACCACGACTTTGAAAAAATAAATT
* * *
7174129 GCTCCTCTAAACAGAGGTACCATGACTTTGAAAAGTAAATTGCTCCTCTAAACAAAGGCACCACG
1 GCTCCTCTAAACAGAGGTACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
** *
7174194 ACTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGATAAGTTGCTCCT
66 ACTTT-GAAAGTAAATTGCTCCTCTAAACAGAAACACCACAACTTT-GAAAGATAA-TTGCTCCT
* * *
7174259 CTAAACAGAGGCACTACGACTTTGGAAAAGTAAATT
128 CTAAACAGAGGCACCACGACTTTGAAAAAATAAATT
* * *
7174295 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAAATAAATTGCTCCTCTAAATAGAGGCACCACG
1 GCTCCTCTAAACAGAGGTACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
7174360 ACTTTGAAAAGTAAATT
66 ACTTTG-AAAGTAAATT
7174377 ACTCATTGAC
Statistics
Matches: 225, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
164 70 0.31
165 13 0.06
166 142 0.63
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (163 bp):
GCTCCTCTAAACAGAGGTACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGAAAGTAAATTGCTCCTCTAAACAGAAACACCACAACTTTGAAAGATAATTGCTCCTCTA
AACAGAGGCACCACGACTTTGAAAAAATAAATT
Found at i:7174685 original size:44 final size:44
Alignment explanation
Indices: 7174637--7174728 Score: 100
Period size: 43 Copynumber: 2.1 Consensus size: 44
7174627 AAAGGTTCTT
* *
7174637 ATTTGGCAAACTTGG-ACTTCATAT-CAAAAAGTCTAAAGCTTTTC
1 ATTTGG-AAACTTGGAAATTCACATCCAAAAAGTC-AAAGCTTTTC
** *
7174681 ATTT-GAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTTTC
1 ATTTGGAAACTTGGAAATTCACATCCAAAAAGTCAAAGCTTTTC
7174724 ATTTG
1 ATTTG
7174729 AGTTCAAAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
42 6 0.15
43 22 0.55
44 12 0.30
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (44 bp):
ATTTGGAAACTTGGAAATTCACATCCAAAAAGTCAAAGCTTTTC
Found at i:7176067 original size:18 final size:19
Alignment explanation
Indices: 7176046--7176090 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
7176036 CTTTTTTCCA
7176046 TTTTCTCATTC-T-TTTTT
1 TTTTCTCATTCATCTTTTT
*
7176063 TTTTTTCA-TCATCTTTTT
1 TTTTCTCATTCATCTTTTT
7176081 TTTTCTCATT
1 TTTTCTCATT
7176091 TTTCATCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 2 0.09
17 8 0.35
18 12 0.52
19 1 0.04
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTCTCATTCATCTTTTT
Found at i:7176068 original size:19 final size:19
Alignment explanation
Indices: 7176046--7176084 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7176036 CTTTTTTCCA
7176046 TTTTC-TCATTCTTTTTTTT
1 TTTTCATCA-TCTTTTTTTT
7176065 TTTTCATCATCTTTTTTTT
1 TTTTCATCATCTTTTTTTT
7176084 T
1 T
7176085 CTCATTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTCATCATCTTTTTTTT
Found at i:7176089 original size:15 final size:15
Alignment explanation
Indices: 7176059--7176093 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
7176049 TCTCATTCTT
7176059 TTTTTTTTTTCATCA
1 TTTTTTTTTTCATCA
7176074 TCTTTTTTTTTC-TCA
1 T-TTTTTTTTTCATCA
7176089 TTTTT
1 TTTTT
7176094 CATCTATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.21
15 5 0.26
16 10 0.53
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTTTTTTCATCA
Found at i:7180107 original size:59 final size:60
Alignment explanation
Indices: 7180015--7180418 Score: 467
Period size: 59 Copynumber: 6.7 Consensus size: 60
7180005 TCTTGTGTAG
* * *
7180015 GAAAAATTAATACTTTCAACTTTTCTCCAAAAATTATTTTTTTGGAAA-TTT-ACTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTTGGAAACTTTGATTTTTAA
* *
7180074 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTTGGAAACTTTGATTTTCAA
1 GAAAAATTGATACTTTCAACTTTTCCCCAAAAA----TATTTTTTTGGAAACTTTGATTTTTAA
* ** * *
7180138 GGAAAATTGATACTTTCAACTTTTCGTCAAAAATATTTTTTTTGAAAACTTTGATTTTCAA
1 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAAACTTTGATTTTTAA
* * *** *
7180199 GAAAAATCGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTAGAAACTTTG-TTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTTAA
* * * *
7180258 GAAAGATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTTGATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTTAA
* * * *** *
7180318 GGAAAATTGATACTTTCAATTTTTCCTCAAAACCCTTTTTTT-GAAA-TTTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTTAA
*
7180376 GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTG
1 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTG
7180419 ATTTTTATTT
Statistics
Matches: 291, Mismatches: 46, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
58 46 0.16
59 82 0.28
60 56 0.19
61 54 0.19
62 14 0.05
63 3 0.01
64 36 0.12
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (60 bp):
GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTTAA
Found at i:7180478 original size:18 final size:18
Alignment explanation
Indices: 7180455--7180508 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
7180445 AACAAAATTG
7180455 AAAATAAATAAAGATAAA
1 AAAATAAATAAAGATAAA
*
7180473 AAAATAAAGAAATG-TAAA
1 AAAATAAATAAA-GATAAA
* *
7180491 ACAA-AAATAAAAATAAA
1 AAAATAAATAAAGATAAA
7180508 A
1 A
7180509 TAAAGATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
17 11 0.37
18 18 0.60
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (18 bp):
AAAATAAATAAAGATAAA
Found at i:7180517 original size:17 final size:17
Alignment explanation
Indices: 7180455--7180520 Score: 54
Period size: 17 Copynumber: 4.2 Consensus size: 17
7180445 AACAAAATTG
7180455 AAAAT-AAATAAAGAT-
1 AAAATAAAATAAAGATA
7180470 -AAA-AAAATAAAG--A
1 AAAATAAAATAAAGATA
** * *
7180483 AATGTAAAACAAAAATA
1 AAAATAAAATAAAGATA
7180500 AAAATAAAATAAAGATA
1 AAAATAAAATAAAGATA
7180517 AAAA
1 AAAA
7180521 ATTTTAAATA
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
14 12 0.32
15 7 0.19
17 18 0.49
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (17 bp):
AAAATAAAATAAAGATA
Found at i:7180548 original size:4 final size:4
Alignment explanation
Indices: 7180541--7180584 Score: 52
Period size: 4 Copynumber: 10.5 Consensus size: 4
7180531 AATCTAATCT
* *
7180541 AATA AATA AATAA AATA AATA AATAA AACA AATA AACA AATA AA
1 AATA AATA AAT-A AATA AATA AAT-A AATA AATA AATA AATA AA
7180585 AAAAAAAACC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
4 27 0.79
5 7 0.21
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:7180559 original size:13 final size:13
Alignment explanation
Indices: 7180541--7180576 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
7180531 AATCTAATCT
7180541 AATAAATAAATAA
1 AATAAATAAATAA
7180554 AATAAATAAATAA
1 AATAAATAAATAA
*
7180567 AACAAATAAA
1 AATAAATAAA
7180577 CAAATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (13 bp):
AATAAATAAATAA
Found at i:7180563 original size:17 final size:16
Alignment explanation
Indices: 7180541--7180588 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 16
7180531 AATCTAATCT
7180541 AATAAATAAATAAAATA
1 AATAAATAAA-AAAATA
7180558 AATAAATAAAACAAATA
1 AATAAATAAAA-AAATA
*
7180575 AACAAATAAAAAAA
1 AATAAATAAAAAAA
7180589 AAAACCTGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 4 0.14
17 25 0.86
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (16 bp):
AATAAATAAAAAAATA
Found at i:7180927 original size:20 final size:20
Alignment explanation
Indices: 7180904--7180942 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7180894 GGTGAAATTT
7180904 TCGTC-AAATTCTGGAAAATA
1 TCGTCGAAA-TCTGGAAAATA
*
7180924 TCGTCGGAATCTGGAAAAT
1 TCGTCGAAATCTGGAAAAT
7180943 TTTACCGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (20 bp):
TCGTCGAAATCTGGAAAATA
Found at i:7181462 original size:19 final size:19
Alignment explanation
Indices: 7181417--7181464 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
7181407 AATAAATAAT
*
7181417 AATAATAATCAGATAATCG
1 AATAAAAATCAGATAATCG
7181436 AA-AAAAATCAGATAAAT-G
1 AATAAAAATCAGAT-AATCG
7181454 AATAAAAATCA
1 AATAAAAATCA
7181465 AATTAACAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.21
Consensus pattern (19 bp):
AATAAAAATCAGATAATCG
Found at i:7181546 original size:11 final size:11
Alignment explanation
Indices: 7181526--7181558 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7181516 AGGTAAAAAA
*
7181526 AATAAAATAAT
1 AATAATATAAT
7181537 AATAATATAAT
1 AATAATATAAT
7181548 AATAATA-AAT
1 AATAATATAAT
7181558 A
1 A
7181559 TAACTATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 4 0.19
11 17 0.81
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
AATAATATAAT
Found at i:7181548 original size:14 final size:15
Alignment explanation
Indices: 7181525--7181588 Score: 64
Period size: 14 Copynumber: 4.4 Consensus size: 15
7181515 AAGGTAAAAA
*
7181525 AAATAAAATAATAAT
1 AAATATAATAATAAT
7181540 -AATATAATAATAAT
1 AAATATAATAATAAT
7181554 AAATATAACT-AT-AT
1 AAATATAA-TAATAAT
*
7181568 AAATAAAATACAT-AT
1 AAATATAATA-ATAAT
7181583 AAATAT
1 AAATAT
7181589 TAACAGAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
13 1 0.02
14 22 0.52
15 18 0.43
16 1 0.02
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATAATAATAAT
Found at i:7181558 original size:66 final size:66
Alignment explanation
Indices: 7181394--7181558 Score: 150
Period size: 66 Copynumber: 2.5 Consensus size: 66
7181384 TCACAGCCAT
* *
7181394 AAAAA-AAAATAATAATAA-ATAATAATAAT-AATCAGATAATCGAAAAAAATCAGATAAATGAA
1 AAAAATAAAATAATAATAATATAATAATAATAAATAAGATAATCGAAAAAAATCAGATAAAGGAA
*
7181456 T
66 A
* * * *
7181457 AAAAATCAAATTAACAGATAATA-AA-AA-AATAAAATAAGATAAATC-CAAAAAAT-A-TTACA
1 AAAAAT-AAAATAATA-ATAATATAATAATAAT-AAATAAGAT-AATCGAAAAAAATCAGATA-A
7181516 AGGTAAA
61 AGG-AAA
7181523 AAAAATAAAATAATAATAATATAATAATAATAAATA
1 AAAAATAAAATAATAATAATATAATAATAATAAATA
7181559 TAACTATATA
Statistics
Matches: 81, Mismatches: 9, Indels: 21
0.73 0.08 0.19
Matches are distributed among these distances:
63 5 0.06
64 11 0.14
65 22 0.27
66 35 0.43
67 8 0.10
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.22
Consensus pattern (66 bp):
AAAAATAAAATAATAATAATATAATAATAATAAATAAGATAATCGAAAAAAATCAGATAAAGGAA
A
Found at i:7181567 original size:23 final size:23
Alignment explanation
Indices: 7181519--7181584 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 23
7181509 TATTACAAGG
*
7181519 TAAAAAAAATAAA-ATAA-TAATAA
1 TAAATAAAATAAATATAACT-AT-A
7181542 TATAATAATAATAAATATAACTATA
1 TA-AATAA-AATAAATATAACTATA
*
7181567 TAAATAAAATACATATAA
1 TAAATAAAATAAATATAA
7181585 ATATTAACAG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
23 12 0.32
24 9 0.24
25 9 0.24
26 6 0.16
27 1 0.03
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (23 bp):
TAAATAAAATAAATATAACTATA
Found at i:7181572 original size:29 final size:27
Alignment explanation
Indices: 7181526--7181588 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 27
7181516 AGGTAAAAAA
*
7181526 AATAAA-ATAATAATAATATAATA-AT
1 AATAAATATAATAATAATAAAATACAT
7181551 AATAAATATAACTATATAAATAAAATACAT
1 AATAAATATAA-TA-AT-AATAAAATACAT
7181581 -ATAAATAT
1 AATAAATAT
7181589 TAACAGAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 6 0.19
26 4 0.12
27 2 0.06
28 2 0.06
29 16 0.50
30 2 0.06
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (27 bp):
AATAAATATAATAATAATAAAATACAT
Found at i:7182113 original size:19 final size:19
Alignment explanation
Indices: 7182056--7182113 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
7182046 GTTAATTAAA
* *
7182056 ATTTTTATTTTTAT-TATG
1 ATTTATATTTTTATATATT
*
7182074 ATTTGATATTTTAATTATATT
1 ATTT-ATATTTTTA-TATATT
7182095 ATTTATATTTTTATATATT
1 ATTTATATTTTTATATATT
7182114 TTGAACATGT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 4 0.12
19 13 0.39
20 9 0.27
21 7 0.21
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (19 bp):
ATTTATATTTTTATATATT
Found at i:7183712 original size:2 final size:2
Alignment explanation
Indices: 7183705--7183735 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7183695 CATCTGTCTT
*
7183705 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7183736 CTTGATACTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7184522 original size:149 final size:149
Alignment explanation
Indices: 7184252--7184545 Score: 464
Period size: 149 Copynumber: 2.0 Consensus size: 149
7184242 ACTAAGTAAA
* **
7184252 TCATGTTTCAAACGTAATATTTCAACTTATAGATTTGACTTCTTTAATTGGCAATGTCATTTAAA
1 TCATGTTTCAAACATAATATTTCAACTTATAGATTTGACTTCCATAATTGGCAATGTCATTTAAA
* * * * *
7184317 CAGAAGCTTAGAAAATTTAGCTTGTTATCAGGTGCAGAGCTGGCTTGTGATTTTAAAATAAAGAC
66 CAGAAGCTCAGAAAATTTAGCTTATTATCAGCTGCAGAACTGGCTTGAGATTTTAAAATAAAGAC
7184382 CAAGATTTGTGTTTACTAG
131 CAAGATTTGTGTTTACTAG
7184401 TCATGTTTCAAACATAATATTTCAACTTATAGATTTGACTTCCATAATTGGCAATGTCATTTAAA
1 TCATGTTTCAAACATAATATTTCAACTTATAGATTTGACTTCCATAATTGGCAATGTCATTTAAA
* ** *
7184466 CAGGAGCTCAGAAGTTTTAGCTTATTATCAGCTGCAGAACTTGCTTGA-AGTTTTAAAATAAAGA
66 CAGAAGCTCAGAAAATTTAGCTTATTATCAGCTGCAGAACTGGCTTGAGA-TTTTAAAATAAAGA
7184530 CCAAGATTTGTGTTTA
130 CCAAGATTTGTGTTTA
7184546 GTAGGAATCA
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
148 1 0.01
149 131 0.99
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (149 bp):
TCATGTTTCAAACATAATATTTCAACTTATAGATTTGACTTCCATAATTGGCAATGTCATTTAAA
CAGAAGCTCAGAAAATTTAGCTTATTATCAGCTGCAGAACTGGCTTGAGATTTTAAAATAAAGAC
CAAGATTTGTGTTTACTAG
Found at i:7186986 original size:50 final size:50
Alignment explanation
Indices: 7186924--7187024 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
7186914 AATGATAGAA
*
7186924 GATTGAAACATTGACTTTAAAACCATTAGGACCATAAGCTGCTGATACAT
1 GATTGAAACATTGACTTTAAAACCATAAGGACCATAAGCTGCTGATACAT
* *
7186974 GATTGAATCATTGACTTTAAAACCGTAAGGACCATAAGCTGCTGATACAT
1 GATTGAAACATTGACTTTAAAACCATAAGGACCATAAGCTGCTGATACAT
7187024 G
1 G
7187025 GCTGCATTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (50 bp):
GATTGAAACATTGACTTTAAAACCATAAGGACCATAAGCTGCTGATACAT
Found at i:7197646 original size:29 final size:29
Alignment explanation
Indices: 7197613--7197685 Score: 69
Period size: 28 Copynumber: 2.5 Consensus size: 29
7197603 ATAATATACT
*
7197613 AAAATATTATTAAAAATATATTTTATAAT-
1 AAAAT-TTATTAAAAATATATTTAATAATA
* * *
7197642 TAAATTTGATT-AATATTTATTTAATAATA
1 AAAATTT-ATTAAAAATATATTTAATAATA
7197671 AAAATTTTATTAAAA
1 AAAA-TTTATTAAAA
7197686 TTTTTACTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
28 16 0.47
29 13 0.38
30 5 0.15
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (29 bp):
AAAATTTATTAAAAATATATTTAATAATA
Found at i:7197688 original size:29 final size:28
Alignment explanation
Indices: 7197612--7197688 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 28
7197602 AATAATATAC
* * *
7197612 TAAAATATTATTAAAAATATATTTTATAA
1 TAAAATTTTATT-AAAATTTATTTAATAA
* * *
7197641 TTAAATTTGATTAATATTTATTTAATAA
1 TAAAATTTTATTAAAATTTATTTAATAA
7197669 TAAAAATTTTATTAAAATTT
1 T-AAAATTTTATTAAAATTT
7197689 TTACTAAAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
28 14 0.37
29 24 0.63
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (28 bp):
TAAAATTTTATTAAAATTTATTTAATAA
Found at i:7198149 original size:17 final size:17
Alignment explanation
Indices: 7198129--7198170 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
7198119 AATATTATTT
*
7198129 TTAATATAAAT-TTAAAA
1 TTAA-ATAAATATAAAAA
7198146 TTAAATAAATATAAAAA
1 TTAAATAAATATAAAAA
7198163 TTAAATAA
1 TTAAATAA
7198171 TTAATTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.26
17 17 0.74
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TTAAATAAATATAAAAA
Found at i:7198179 original size:25 final size:24
Alignment explanation
Indices: 7198131--7198184 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
7198121 TATTATTTTT
* *
7198131 AATATAAATTTAAAATTAAATAAA
1 AATAAAAATTAAAAATTAAATAAA
* *
7198155 TATAAAAATTAAATAATTAATTAAA
1 AATAAAAATTAAA-AATTAAATAAA
7198180 AATAA
1 AATAA
7198185 TTTTTTATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (24 bp):
AATAAAAATTAAAAATTAAATAAA
Found at i:7202000 original size:12 final size:12
Alignment explanation
Indices: 7201979--7202036 Score: 63
Period size: 12 Copynumber: 5.2 Consensus size: 12
7201969 GTTTAAATTA
*
7201979 TAATAAAATATT
1 TAATATAATATT
7201991 TAATATAATATT
1 TAATATAATATT
*
7202003 TAA-AT--TTTT
1 TAATATAATATT
7202012 TAA-ATAAT-TT
1 TAATATAATATT
7202022 TAATATAATATT
1 TAATATAATATT
7202034 TAA
1 TAA
7202037 ATTATAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 8 0.20
10 5 0.12
11 8 0.20
12 19 0.47
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TAATATAATATT
Found at i:7202005 original size:31 final size:33
Alignment explanation
Indices: 7201970--7202043 Score: 102
Period size: 31 Copynumber: 2.4 Consensus size: 33
7201960 ATGAATAGGG
7201970 TTTAAATTATAATAAAAT-A-TTTAATATAATA
1 TTTAAATTATAATAAAATAATTTTAATATAATA
* *
7202001 TTTAAATT-T-TTTAAATAATTTTAATATAATA
1 TTTAAATTATAATAAAATAATTTTAATATAATA
7202032 TTTAAATTATAA
1 TTTAAATTATAA
7202044 ATATATTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
29 5 0.14
30 2 0.06
31 28 0.78
32 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (33 bp):
TTTAAATTATAATAAAATAATTTTAATATAATA
Found at i:7202291 original size:20 final size:19
Alignment explanation
Indices: 7202266--7202305 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
7202256 CCGAATCAAA
*
7202266 ATATATATTTT-AATTTTT
1 ATATATATTTTAAAATTTT
7202284 ATATATATTTTAAAATTTT
1 ATATATATTTTAAAATTTT
7202303 ATA
1 ATA
7202306 CAATAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
ATATATATTTTAAAATTTT
Found at i:7202384 original size:7 final size:7
Alignment explanation
Indices: 7202374--7202403 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
7202364 AATAATATAT
7202374 AAAATTA
1 AAAATTA
7202381 AAAATTA
1 AAAATTA
7202388 AAAATTA
1 AAAATTA
*
7202395 AAAAGTA
1 AAAATTA
7202402 AA
1 AA
7202404 TGAAACCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (7 bp):
AAAATTA
Found at i:7202636 original size:29 final size:31
Alignment explanation
Indices: 7202576--7202641 Score: 91
Period size: 32 Copynumber: 2.2 Consensus size: 31
7202566 ATTTTAAAGA
*
7202576 TAAATATCACATTAATAAATAAATTTATAATT
1 TAAATATCACATTAATAAAT-AATTTAAAATT
*
7202608 TAAATATCACATTAA-AAAT-TTTTAAAATT
1 TAAATATCACATTAATAAATAATTTAAAATT
7202637 TAAAT
1 TAAAT
7202642 TTTATATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 13 0.41
31 4 0.12
32 15 0.47
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (31 bp):
TAAATATCACATTAATAAATAATTTAAAATT
Found at i:7203249 original size:103 final size:103
Alignment explanation
Indices: 7203080--7203291 Score: 415
Period size: 103 Copynumber: 2.1 Consensus size: 103
7203070 AATTCCTCAA
7203080 AATTTTGGTGATTTTATTAATTTATCAATCAATTTAACCTTTGTGGATAGTGATGACAACAGATC
1 AATTTTGGTGATTTTATTAATTTATCAATCAATTTAACCTTTGTGGATAGTGATGACAACAGATC
7203145 GAAGTGGAGTGAGTTTTTATTCGTTTTGAATTCGATTT
66 GAAGTGGAGTGAGTTTTTATTCGTTTTGAATTCGATTT
7203183 AATTTTGGTGATTTTATTAATTTATCAATCAATTTAACCTTTGTGGATAGTGATGACAACAGATC
1 AATTTTGGTGATTTTATTAATTTATCAATCAATTTAACCTTTGTGGATAGTGATGACAACAGATC
7203248 GAAGTGGAGTGAGTTTTTATTCGTTTTGAATTCGATTT
66 GAAGTGGAGTGAGTTTTTATTCGTTTTGAATTCGATTT
*
7203286 GATTTT
1 AATTTT
7203292 AAACATATAA
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 108 1.00
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.44
Consensus pattern (103 bp):
AATTTTGGTGATTTTATTAATTTATCAATCAATTTAACCTTTGTGGATAGTGATGACAACAGATC
GAAGTGGAGTGAGTTTTTATTCGTTTTGAATTCGATTT
Found at i:7203450 original size:14 final size:14
Alignment explanation
Indices: 7203424--7203469 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
7203414 TAATATAAAT
7203424 ATAAAATTAAATAA
1 ATAAAATTAAATAA
* *
7203438 AT-ATATATAAATAT
1 ATAAAAT-TAAATAA
7203452 ATAAAATTAAATAA
1 ATAAAATTAAATAA
7203466 ATAA
1 ATAA
7203470 TTAAAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 3 0.12
14 20 0.77
15 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAAAATTAAATAA
Found at i:7240337 original size:14 final size:15
Alignment explanation
Indices: 7240306--7240352 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
7240296 TATGAATAAT
*
7240306 AAACAAACTATAACC
1 AAACAAACTATAAAC
*
7240321 AAACAAA-TTTAAAC
1 AAACAAACTATAAAC
**
7240335 AAACAAACCCTAAAC
1 AAACAAACTATAAAC
7240350 AAA
1 AAA
7240353 TATAAATGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.64, C:0.23, G:0.00, T:0.13
Consensus pattern (15 bp):
AAACAAACTATAAAC
Found at i:7240349 original size:25 final size:25
Alignment explanation
Indices: 7240304--7240358 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
7240294 TTTATGAATA
7240304 ATAAACAAACTATAACCAAACAAAT
1 ATAAACAAACTATAACCAAACAAAT
*
7240329 TTAAACAAAC-A-AACCCTAAACAAAT
1 ATAAACAAACTATAA-CC-AAACAAAT
7240354 ATAAA
1 ATAAA
7240359 TGAACCCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 2 0.08
24 3 0.12
25 21 0.81
ACGTcount: A:0.64, C:0.20, G:0.00, T:0.16
Consensus pattern (25 bp):
ATAAACAAACTATAACCAAACAAAT
Found at i:7240371 original size:20 final size:21
Alignment explanation
Indices: 7240340--7240389 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
7240330 TAAACAAACA
*
7240340 AACCCTAAACAAATATAAATG
1 AACCCTAAACAAACATAAATG
7240361 AACCC-AAACAAACATAAATG
1 AACCCTAAACAAACATAAATG
*
7240381 AACCTTAAA
1 AACCCTAAA
7240390 ATATTATTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 18 0.69
21 8 0.31
ACGTcount: A:0.58, C:0.22, G:0.04, T:0.16
Consensus pattern (21 bp):
AACCCTAAACAAACATAAATG
Found at i:7242037 original size:11 final size:11
Alignment explanation
Indices: 7242021--7242077 Score: 51
Period size: 11 Copynumber: 4.8 Consensus size: 11
7242011 TTTTTTATTT
7242021 AATTTAAATTA
1 AATTTAAATTA
7242032 AATTTAAATATTA
1 AATTT-AA-ATTA
* *
7242045 AATATATATATCA
1 AAT-T-TAAATTA
7242058 AATTTAAATTA
1 AATTTAAATTA
*
7242069 ATTTTAAAT
1 AATTTAAAT
7242078 CAGAGGTGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
11 18 0.49
12 3 0.08
13 13 0.35
14 2 0.05
15 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTTAAATTA
Found at i:7245903 original size:11 final size:11
Alignment explanation
Indices: 7245887--7245943 Score: 51
Period size: 11 Copynumber: 4.8 Consensus size: 11
7245877 TTTTTTATTT
7245887 AATTTAAATTA
1 AATTTAAATTA
7245898 AATTTAAATATTA
1 AATTT-AA-ATTA
* *
7245911 AATATATATATCA
1 AAT-T-TAAATTA
7245924 AATTTAAATTA
1 AATTTAAATTA
*
7245935 ATTTTAAAT
1 AATTTAAAT
7245944 CAGAGGTGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
11 18 0.49
12 3 0.08
13 13 0.35
14 2 0.05
15 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTTAAATTA
Found at i:7254647 original size:10 final size:11
Alignment explanation
Indices: 7254628--7254661 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7254618 TTAAAATGTG
7254628 ATATAAAAATA
1 ATATAAAAATA
7254639 ATA-AAAAATA
1 ATATAAAAATA
*
7254649 ACATAAAAATA
1 ATATAAAAATA
7254660 AT
1 AT
7254662 TTAATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (11 bp):
ATATAAAAATA
Found at i:7254762 original size:72 final size:67
Alignment explanation
Indices: 7254684--7254815 Score: 169
Period size: 72 Copynumber: 1.9 Consensus size: 67
7254674 TTTAAAAAAA
*
7254684 TTATATATAAAT-TTA-ATAAATTTAATAAATATATTTTATATTTTCATATCAATATAAATAATA
1 TTATATA-AAATATTATATAAATAT-ATAAAT-TA-TTTATATTTT-ATA-CAATATAAAT-ATA
7254747 TATAATTTT
59 TATAATTTT
*
7254756 TTATATAAAATATTATATAAATATATAAATTATTTATATTTTATACTATATAAATATATA
1 TTATATAAAATATTATATAAATATATAAATTATTTATATTTTATACAATATAAATATATA
7254816 AATATATAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
67 5 0.09
68 9 0.16
69 3 0.05
70 10 0.18
71 6 0.11
72 16 0.29
73 7 0.12
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.49
Consensus pattern (67 bp):
TTATATAAAATATTATATAAATATATAAATTATTTATATTTTATACAATATAAATATATATAATT
TT
Found at i:7254782 original size:8 final size:8
Alignment explanation
Indices: 7254769--7254826 Score: 55
Period size: 8 Copynumber: 7.1 Consensus size: 8
7254759 TATAAAATAT
7254769 TATATAAA
1 TATATAAA
7254777 TATATAAA
1 TATATAAA
**
7254785 T-TATTTA
1 TATATAAA
* *
7254792 TATTTTATAC
1 TA-TATA-AA
7254802 TATATAAA
1 TATATAAA
7254810 TATATAAA
1 TATATAAA
7254818 TATATAAA
1 TATATAAA
7254826 T
1 T
7254827 TTATTTAAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
7 5 0.13
8 27 0.69
9 5 0.13
10 2 0.05
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (8 bp):
TATATAAA
Found at i:7254806 original size:33 final size:33
Alignment explanation
Indices: 7254699--7254818 Score: 114
Period size: 33 Copynumber: 3.4 Consensus size: 33
7254689 TATAAATTTA
* *
7254699 ATAAATTTAATAAATATATTTTATATTTTCATATCAAT
1 ATAAATAT-ATAAAT-TA-TTTATATTTT-ATA-CTAT
* *** *
7254737 ATAAATAATATATAATTTTTTATATAAAATATTAT
1 ATAAAT-ATATA-AATTATTTATATTTTATACTAT
7254772 ATAAATATATAAATTATTTATATTTTATACTAT
1 ATAAATATATAAATTATTTATATTTTATACTAT
7254805 ATAAATATATAAAT
1 ATAAATATATAAAT
7254819 ATATAAATTT
Statistics
Matches: 68, Mismatches: 12, Indels: 9
0.76 0.13 0.10
Matches are distributed among these distances:
33 31 0.46
34 5 0.07
35 8 0.12
36 3 0.04
37 7 0.10
38 10 0.15
39 4 0.06
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (33 bp):
ATAAATATATAAATTATTTATATTTTATACTAT
Found at i:7255467 original size:22 final size:21
Alignment explanation
Indices: 7255411--7255485 Score: 61
Period size: 22 Copynumber: 3.7 Consensus size: 21
7255401 TTTTTTAATT
7255411 TAATAT-TTTAAAAAT-AATA
1 TAATATATTTAAAAATAAATA
* *
7255430 TAATA-ATAT-AATATAAATA
1 TAATATATTTAAAAATAAATA
7255449 TAATATGATTTAAAAATAAA-A
1 TAATAT-ATTTAAAAATAAATA
*
7255470 CTAAGATAATTTAAAA
1 -TAATAT-ATTTAAAA
7255486 TTTTAATAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
18 4 0.09
19 16 0.36
21 4 0.09
22 20 0.45
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (21 bp):
TAATATATTTAAAAATAAATA
Found at i:7255583 original size:32 final size:32
Alignment explanation
Indices: 7255491--7255608 Score: 104
Period size: 31 Copynumber: 3.8 Consensus size: 32
7255481 TAAAATTTTA
*
7255491 ATAATTAT-TATATATAATTTTTA-A-AAAAT
1 ATAAATATATATATATAATTTTTATATAAAAT
* * * *
7255520 AAAAATATATAT-TATATTTTTTGTAT-CAAT
1 ATAAATATATATATATAATTTTTATATAAAAT
* * *
7255550 ATAAATTTTTGTATATAATTTTTATATAAAAT
1 ATAAATATATATATATAATTTTTATATAAAAT
*
7255582 AT-AATATAAATATATAAATTTTTATAT
1 ATAAATATATATATAT-AATTTTTATAT
7255609 TTTATATAAC
Statistics
Matches: 67, Mismatches: 16, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
29 15 0.22
30 15 0.22
31 21 0.31
32 16 0.24
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (32 bp):
ATAAATATATATATATAATTTTTATATAAAAT
Found at i:7261900 original size:14 final size:15
Alignment explanation
Indices: 7261872--7261902 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
7261862 TAGATCCGAA
7261872 TAAAATATATATAAT
1 TAAAATATATATAAT
7261887 TAAAATAT-TATAAT
1 TAAAATATATATAAT
7261901 TA
1 TA
7261903 TATAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAAATATATATAAT
Found at i:7272039 original size:4 final size:4
Alignment explanation
Indices: 7272032--7272056 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7272022 TCTCTCTCTC
7272032 TCTA TCTA TCTA TCTA TCTA TCTA T
1 TCTA TCTA TCTA TCTA TCTA TCTA T
7272057 ATATATGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCTA
Found at i:7278857 original size:20 final size:21
Alignment explanation
Indices: 7278828--7278867 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
7278818 GAGTCCAAAA
* *
7278828 AATTAGGAAA-AAAATCCAGC
1 AATTAAGAAATAAAACCCAGC
7278848 AATTAAGAAATAAAACCCAG
1 AATTAAGAAATAAAACCCAG
7278868 AAAAATTCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.57, C:0.15, G:0.12, T:0.15
Consensus pattern (21 bp):
AATTAAGAAATAAAACCCAGC
Found at i:7280251 original size:14 final size:14
Alignment explanation
Indices: 7280232--7280260 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7280222 TGAATCTACC
7280232 TTATTCAACAATCA
1 TTATTCAACAATCA
7280246 TTATTCAACAATCA
1 TTATTCAACAATCA
7280260 T
1 T
7280261 AGCAACCAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (14 bp):
TTATTCAACAATCA
Found at i:7286844 original size:2 final size:2
Alignment explanation
Indices: 7286837--7286881 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
7286827 GCAGAGGGGA
7286837 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7286879 AG A
1 AG A
7286882 AAATGATTCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7287740 original size:15 final size:17
Alignment explanation
Indices: 7287720--7287752 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
7287710 ATATTTAAGT
7287720 TTAAATTT-T-ATTAAA
1 TTAAATTTATAATTAAA
7287735 TTAAATTTATAATTAAA
1 TTAAATTTATAATTAAA
7287752 T
1 T
7287753 AATACATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTAAATTTATAATTAAA
Found at i:7295870 original size:24 final size:24
Alignment explanation
Indices: 7295843--7295889 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7295833 TAAAGAAAGA
**
7295843 ATTTTTTTTTTATATATAATTGTT
1 ATTTTTTTAATATATATAATTGTT
*
7295867 ATTTTTTTAATATCTATAATTGT
1 ATTTTTTTAATATATATAATTGT
7295890 CAAAAATTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (24 bp):
ATTTTTTTAATATATATAATTGTT
Found at i:7296632 original size:15 final size:16
Alignment explanation
Indices: 7296614--7296646 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7296604 TTTTTATTAC
7296614 TATTATCATTAT-TTT
1 TATTATCATTATGTTT
*
7296629 TATTATTATTATGTTT
1 TATTATCATTATGTTT
7296645 TA
1 TA
7296647 ATAATTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (16 bp):
TATTATCATTATGTTT
Found at i:7298333 original size:2 final size:2
Alignment explanation
Indices: 7298326--7298351 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7298316 TTGCTATGTA
7298326 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7298352 TTGTTTGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7298409 original size:3 final size:3
Alignment explanation
Indices: 7298401--7298441 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7298391 AATCATACAA
7298401 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
7298442 ATACATATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:7299153 original size:23 final size:23
Alignment explanation
Indices: 7299124--7299170 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
7299114 CTTGTTTGTC
*
7299124 TTATTTATTT-ATCTTTTAATTTT
1 TTATTTATTTGAT-TTTAAATTTT
7299147 TTATTTATTTGATTTTAAATTTT
1 TTATTTATTTGATTTTAAATTTT
7299170 T
1 T
7299171 ATCGTAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.91
24 2 0.09
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (23 bp):
TTATTTATTTGATTTTAAATTTT
Found at i:7299169 original size:22 final size:22
Alignment explanation
Indices: 7299124--7299172 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
7299114 CTTGTTTGTC
*
7299124 TTATTTATTTATCTTTTAATTTT
1 TTATTTATTTA-CTTTTAAATTT
7299147 TTATTTATTTGA-TTTTAAATTT
1 TTATTTATTT-ACTTTTAAATTT
7299169 TTAT
1 TTAT
7299173 CGTAAATCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 13 0.54
23 10 0.42
24 1 0.04
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (22 bp):
TTATTTATTTACTTTTAAATTT
Found at i:7299745 original size:8 final size:7
Alignment explanation
Indices: 7299713--7299768 Score: 51
Period size: 8 Copynumber: 7.4 Consensus size: 7
7299703 CTTCAGGTAT
7299713 TTTATT-
1 TTTATTA
7299719 TTTATTTA
1 TTTA-TTA
*
7299727 TTTAACTA
1 TTT-ATTA
7299735 TTTATTGA
1 TTTATT-A
7299743 TTTATTGA
1 TTTATT-A
7299751 TTTGATTA
1 TTT-ATTA
7299759 TTTATTA
1 TTTATTA
7299766 TTT
1 TTT
7299769 TTTAAATATA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
6 4 0.09
7 11 0.26
8 24 0.56
9 4 0.09
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (7 bp):
TTTATTA
Found at i:7299803 original size:16 final size:16
Alignment explanation
Indices: 7299772--7299805 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7299762 ATTATTTTTT
**
7299772 AAATATATTTTTATAA
1 AAATATATTTAAATAA
7299788 AAATATATTTAAATAA
1 AAATATATTTAAATAA
7299804 AA
1 AA
7299806 GACTTTAGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATATATTTAAATAA
Found at i:7299838 original size:110 final size:110
Alignment explanation
Indices: 7299710--7299917 Score: 407
Period size: 110 Copynumber: 1.9 Consensus size: 110
7299700 TAACTTCAGG
7299710 TATTTTATTTTTATTTATTTAACTATTTATTGATTTATTGATTTGATTATTTATTATTTTTTAAA
1 TATTTTATTTTTATTTATTTAACTATTTATTGATTTATTGATTTGATTATTTATTATTTTTTAAA
*
7299775 TATATTTTTATAAAAATATATTTAAATAAAAGACTTTAGGTATTT
66 TATATTTTTATAAAAACATATTTAAATAAAAGACTTTAGGTATTT
7299820 TATTTTATTTTTATTTATTTAACTATTTATTGATTTATTGATTTGATTATTTATTATTTTTTAAA
1 TATTTTATTTTTATTTATTTAACTATTTATTGATTTATTGATTTGATTATTTATTATTTTTTAAA
7299885 TATATTTTTATAAAAACATATTTAAATAAAAGA
66 TATATTTTTATAAAAACATATTTAAATAAAAGA
7299918 AATGGCTAGC
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 97 1.00
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.58
Consensus pattern (110 bp):
TATTTTATTTTTATTTATTTAACTATTTATTGATTTATTGATTTGATTATTTATTATTTTTTAAA
TATATTTTTATAAAAACATATTTAAATAAAAGACTTTAGGTATTT
Found at i:7299855 original size:8 final size:7
Alignment explanation
Indices: 7299823--7299878 Score: 51
Period size: 8 Copynumber: 7.4 Consensus size: 7
7299813 GGTATTTTAT
7299823 TTTATT-
1 TTTATTA
7299829 TTTATTTA
1 TTTA-TTA
*
7299837 TTTAACTA
1 TTT-ATTA
7299845 TTTATTGA
1 TTTATT-A
7299853 TTTATTGA
1 TTTATT-A
7299861 TTTGATTA
1 TTT-ATTA
7299869 TTTATTA
1 TTTATTA
7299876 TTT
1 TTT
7299879 TTTAAATATA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
6 4 0.09
7 11 0.26
8 24 0.56
9 4 0.09
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (7 bp):
TTTATTA
Found at i:7299958 original size:110 final size:108
Alignment explanation
Indices: 7299721--7299952 Score: 301
Period size: 110 Copynumber: 2.1 Consensus size: 108
7299711 ATTTTATTTT
*
7299721 TATTTATTTAACTATTTATTGATTTATTGATTTGATTATTTATTATTTTTTAAATATATTTTTAT
1 TATTTA-TCAACTATTTATTGATTTATTGATTTGATTATTTATTATTTTTTAAATATATTTTTAT
* * * * * **
7299786 AAAAATATATTTAAATAAAAGACTTTAGGTATTTTATTTTATTTT
65 AAAAACATATTTAAATAAAAGAATCTAGGCAATTTATTTTA-TGG
*
7299831 TATTTATTTAACTATTTATTGATTTATTGATTTGATTATTTATTATTTTTTAAATATATTTTTAT
1 TATTTA-TCAACTATTTATTGATTTATTGATTTGATTATTTATTATTTTTTAAATATATTTTTAT
7299896 AAAAACATATTTAAATAAAAGAAATGGCTA-GCAATTT-TTTTA-GG
65 AAAAACATATTTAAATAAAAG-AAT--CTAGGCAATTTATTTTATGG
7299940 TATTTA-CAACTAT
1 TATTTATCAACTAT
7299953 CATTTACTCT
Statistics
Matches: 111, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
107 6 0.05
109 6 0.05
110 85 0.77
111 7 0.06
112 5 0.05
113 2 0.02
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.54
Consensus pattern (108 bp):
TATTTATCAACTATTTATTGATTTATTGATTTGATTATTTATTATTTTTTAAATATATTTTTATA
AAAACATATTTAAATAAAAGAATCTAGGCAATTTATTTTATGG
Found at i:7300386 original size:5 final size:5
Alignment explanation
Indices: 7300376--7300421 Score: 51
Period size: 5 Copynumber: 9.0 Consensus size: 5
7300366 AGACTTATAG
7300376 TATTT TATTT TATTT TATTT TATTT AACTATTT TA-TT TA-TT TATTT
1 TATTT TATTT TATTT TATTT TATTT ---TATTT TATTT TATTT TATTT
7300422 GATTATCTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
4 8 0.22
5 24 0.65
8 5 0.14
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (5 bp):
TATTT
Found at i:7300409 original size:13 final size:13
Alignment explanation
Indices: 7300391--7300441 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
7300381 TATTTTATTT
7300391 TATTTTATTTAAC
1 TATTTTATTTAAC
**
7300404 TATTTTATTTATT
1 TATTTTATTTAAC
* *
7300417 TATTTGA-TTATC
1 TATTTTATTTAAC
7300429 TATTATTATTTAA
1 TATT-TTATTTAA
7300442 ATATATTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
12 8 0.27
13 19 0.63
14 3 0.10
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (13 bp):
TATTTTATTTAAC
Found at i:7300468 original size:107 final size:103
Alignment explanation
Indices: 7300283--7300475 Score: 332
Period size: 107 Copynumber: 1.8 Consensus size: 103
7300273 CCGACTTAGG
*
7300283 TATTTTATTTTATTTTATTTATTTATTTATTTGATTATCTATTATTCTTTAAATATATTTTTATA
1 TATTTTATTTTATTTTATTTATTTATTTATTTGATTATCTATTATTATTTAAATATATTTTTATA
*
7300348 AAAACATATTTAAATAAAAGACTTATAGTATTTTATTT
66 AAAACATACTTAAATAAAAGACTTATAGTATTTTATTT
7300386 TATTTTATTTTATTTAACTATTTTATTTATTTATTTGATTATCTATTATTATTTAAATATATTTT
1 TATTTTATTTTATTT---TA-TTTATTTATTTATTTGATTATCTATTATTATTTAAATATATTTT
7300451 TATAAAAACATACTTAAATAAAAGA
62 TATAAAAACATACTTAAATAAAAGA
7300476 GATGGAGAAA
Statistics
Matches: 84, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
103 15 0.18
106 2 0.02
107 67 0.80
ACGTcount: A:0.37, C:0.04, G:0.03, T:0.56
Consensus pattern (103 bp):
TATTTTATTTTATTTTATTTATTTATTTATTTGATTATCTATTATTATTTAAATATATTTTTATA
AAAACATACTTAAATAAAAGACTTATAGTATTTTATTT
Found at i:7300758 original size:13 final size:13
Alignment explanation
Indices: 7300723--7300758 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
7300713 GAGTTACAAA
7300723 AAAAAAAAAAAAC
1 AAAAAAAAAAAAC
**
7300736 AAAACTAAAAAAC
1 AAAAAAAAAAAAC
7300749 AAAAAAAAAA
1 AAAAAAAAAA
7300759 GTTAATTGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.89, C:0.08, G:0.00, T:0.03
Consensus pattern (13 bp):
AAAAAAAAAAAAC
Found at i:7303908 original size:13 final size:14
Alignment explanation
Indices: 7303872--7303909 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
7303862 AATAAATGAA
7303872 TAAAGAAAAATATTT
1 TAAA-AAAAATATTT
7303887 TAAAAAAAATATTT
1 TAAAAAAAATATTT
7303901 TAAGAAAAA
1 TAA-AAAAA
7303910 GTTGAAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (14 bp):
TAAAAAAAATATTT
Found at i:7303967 original size:58 final size:58
Alignment explanation
Indices: 7303898--7304007 Score: 184
Period size: 58 Copynumber: 1.9 Consensus size: 58
7303888 AAAAAAAATA
* *
7303898 TTTTAAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCTAAAGGATAT
1 TTTTAAGAAAAAGTTAAAAATATCAATTTTCCTTGAAAATAAAATTTCTAAAGGATAT
* *
7303956 TTTTGAGAAAAAGTTAAAAATATCAATTTTTCTTGAAAATAAAATTTCTAAA
1 TTTTAAGAAAAAGTTAAAAATATCAATTTTCCTTGAAAATAAAATTTCTAAA
7304008 ATAAAAATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.37
Consensus pattern (58 bp):
TTTTAAGAAAAAGTTAAAAATATCAATTTTCCTTGAAAATAAAATTTCTAAAGGATAT
Found at i:7304010 original size:14 final size:15
Alignment explanation
Indices: 7303991--7304023 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7303981 ATTTTTCTTG
7303991 AAAAT-AAAATTTCT
1 AAAATAAAAATTTCT
*
7304005 AAAATAAAAATTTTT
1 AAAATAAAAATTTCT
7304020 AAAA
1 AAAA
7304024 AGTATTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAATAAAAATTTCT
Found at i:7304011 original size:72 final size:70
Alignment explanation
Indices: 7303933--7304084 Score: 200
Period size: 72 Copynumber: 2.1 Consensus size: 70
7303923 ATTTTCCTTG
*
7303933 AAAATAAAATTTCT-AAAGGATATTTTTGAGAAAAAGTTAAAAATATCAATTTTTCTTGAAAATA
1 AAAATAAAATTTCTAAAAAG-TA-TTTTGAGAAAAAGTTAAAAATATCAATTTTTCTTGAAAATA
7303997 AAATTTC
64 AAATTTC
* * * * *
7304004 TAAAATAAAAATTTTTAAAAAGTATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAATTA
1 -AAAAT-AAAATTTCTAAAAAGTATTTTGAGAAAAAGTTAAAAATATCAATTTTTCTTGAAAATA
7304069 AAATTTC
64 AAATTTC
7304076 AAAA-AAAAT
1 AAAATAAAAT
7304085 ATTTTTAAGA
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
69 5 0.07
71 4 0.06
72 49 0.68
73 10 0.14
74 4 0.06
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (70 bp):
AAAATAAAATTTCTAAAAAGTATTTTGAGAAAAAGTTAAAAATATCAATTTTTCTTGAAAATAAA
ATTTC
Found at i:7304056 original size:130 final size:130
Alignment explanation
Indices: 7303890--7304129 Score: 347
Period size: 130 Copynumber: 1.8 Consensus size: 130
7303880 AATATTTTAA
* **
7303890 AAAAAATATTTTAAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTC-TAAAGGAT
1 AAAAAATATTTTAAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCAAAAAAAAT
*
7303954 ATTTTTGAGAAAAAGTTAAAAATATCAATTTTTCTTGAAAATAAAATTTCTAAAATAAAAATTTT
66 ATTTTTAAGAAAAAGTTAAAAATATCAATTTTTCTT-AAAATAAAATTTCTAAAATAAAAATTTT
7304019 T
130 T
* * * * *
7304020 AAAAAGTATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAATTAAAATTTCAAAAAAAAT
1 AAAAAATATTTTAAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCAAAAAAAAT
* ** *
7304085 ATTTTTAAGAAAAAGTTGAAGGTATTAATTTTTCTTAAAATAAAA
66 ATTTTTAAGAAAAAGTTAAAAATATCAATTTTTCTTAAAATAAAA
7304130 AAAAAACTCA
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
130 60 0.62
131 36 0.38
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.37
Consensus pattern (130 bp):
AAAAAATATTTTAAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCAAAAAAAAT
ATTTTTAAGAAAAAGTTAAAAATATCAATTTTTCTTAAAATAAAATTTCTAAAATAAAAATTTTT
Found at i:7304088 original size:58 final size:59
Alignment explanation
Indices: 7304000--7304130 Score: 160
Period size: 59 Copynumber: 2.3 Consensus size: 59
7303990 GAAAATAAAA
** * * *
7304000 TTTC-TAAAATAAAAATTT-TTAAAAAGTA-TTTTGAGGAAAAGTTGAAAGTATCAATT
1 TTTCTTAAAATAAAAATTTCAAAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATT
* * * *
7304056 TTTCTTGAAATTAAAATTTCAAAAAAAATATTTTTAAGAAAAAGTTGAAGGTATTAATT
1 TTTCTTAAAATAAAAATTTCAAAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATT
7304115 TTTCTTAAAATAAAAA
1 TTTCTTAAAATAAAAA
7304131 AAAAACTCAA
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
56 4 0.07
57 12 0.20
58 7 0.11
59 38 0.62
ACGTcount: A:0.48, C:0.04, G:0.10, T:0.38
Consensus pattern (59 bp):
TTTCTTAAAATAAAAATTTCAAAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATT
Found at i:7304115 original size:59 final size:57
Alignment explanation
Indices: 7304036--7304179 Score: 159
Period size: 58 Copynumber: 2.5 Consensus size: 57
7304026 TATTTTGAGG
* * * *
7304036 AAAAGTTGAAAGTATCAATTTTTCTTGAAATTAAAATTTCAAAAAA-AATA-TTTTTAAGA
1 AAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAA----AAAAAACAAAACGTTTTAAGA
*
7304095 AAAAGTTGAAGGTATTAATTTTTCTT-AAAATAAAAAAAAAACTCAAAACGTTTTAAGA
1 AAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAAAAAAAA--CAAAACGTTTTAAGA
*
7304153 AAAAATTGAAAGTATTAATTTTTCTTG
1 AAAAGTTGAAAGTATTAATTTTTCTTG
7304180 TATAAAAGCA
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
54 6 0.08
57 3 0.04
58 40 0.55
59 24 0.33
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.36
Consensus pattern (57 bp):
AAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAAAAAAAACAAAACGTTTTAAGA
Found at i:7308027 original size:28 final size:30
Alignment explanation
Indices: 7307995--7308059 Score: 82
Period size: 28 Copynumber: 2.2 Consensus size: 30
7307985 AACAATGGAT
7307995 GAAAAAAGATGAAAAACA-AAAAAAA-AAG-
1 GAAAAAAGATGAAAAA-ATAAAAAAATAAGA
**
7308023 GAAAATGGATGAAAAAATAAAAAAATAAGA
1 GAAAAAAGATGAAAAAATAAAAAAATAAGA
7308053 GAAAAAA
1 GAAAAAA
7308060 AAAAGAGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 1 0.03
28 21 0.70
29 3 0.10
30 5 0.17
ACGTcount: A:0.75, C:0.02, G:0.15, T:0.08
Consensus pattern (30 bp):
GAAAAAAGATGAAAAAATAAAAAAATAAGA
Found at i:7308093 original size:18 final size:17
Alignment explanation
Indices: 7308031--7308097 Score: 59
Period size: 18 Copynumber: 3.9 Consensus size: 17
7308021 AGGAAAATGG
*
7308031 ATGAAAA-AATAAAAAA
1 ATGAAAAGAAAAAAAAA
*
7308047 AT-AAGAGAAAAAAAAA
1 ATGAAAAGAAAAAAAAA
*
7308063 A-GAGAATGAAAAAAAAAA
1 ATGA-AAAG-AAAAAAAAA
7308081 GATGAAAAGAAAAAAAA
1 -ATGAAAAGAAAAAAAA
7308098 GATTTAAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
15 3 0.08
16 12 0.30
17 2 0.05
18 17 0.43
19 4 0.10
20 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.07
Consensus pattern (17 bp):
ATGAAAAGAAAAAAAAA
Found at i:7308098 original size:17 final size:17
Alignment explanation
Indices: 7308030--7308100 Score: 69
Period size: 17 Copynumber: 4.2 Consensus size: 17
7308020 AAGGAAAATG
7308030 GATGAA-AAAATAAAAAA
1 GATGAAGAAAA-AAAAAA
*
7308047 -ATAAGAGAAAAAAAAAA
1 GATGA-AGAAAAAAAAAA
7308064 GA-GAATGAAAAAAAAAA
1 GATGAA-GAAAAAAAAAA
7308081 GATGAA-AAGAAAAAAAA
1 GATGAAGAA-AAAAAAAA
7308098 GAT
1 GAT
7308101 TTAAATTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
16 6 0.13
17 32 0.70
18 8 0.17
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.08
Consensus pattern (17 bp):
GATGAAGAAAAAAAAAA
Found at i:7308979 original size:64 final size:64
Alignment explanation
Indices: 7308857--7308981 Score: 144
Period size: 64 Copynumber: 2.0 Consensus size: 64
7308847 CGTAATTGAC
* * * * **
7308857 AAAACTCGTTTTAAAATTGTTAATACTAAGAAGCCTGTGAGTGATGACCCAATGATGAAAAACA
1 AAAACTCGTTTTAAAATTGGTAATACTAAGAAACCTGTGAATGATGACCAAAAAATGAAAAACA
* * * *
7308921 AAAACTTGTTTTGAAATTGGTAATGCTGAA-AAACCTGTGAATGATGATCAAAAAATGAAAA
1 AAAACTCGTTTTAAAATTGGTAATACT-AAGAAACCTGTGAATGATGACCAAAAAATGAAAA
7308982 TGATGAGGAT
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
64 48 0.96
65 2 0.04
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.27
Consensus pattern (64 bp):
AAAACTCGTTTTAAAATTGGTAATACTAAGAAACCTGTGAATGATGACCAAAAAATGAAAAACA
Found at i:7309421 original size:46 final size:46
Alignment explanation
Indices: 7309370--7309594 Score: 321
Period size: 46 Copynumber: 4.9 Consensus size: 46
7309360 GTTTTCAATT
* *
7309370 TTAAATAAGAATCTTTAAGATATTTTCAAATGAAAATCTTTGAGTC
1 TTAAATGAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTC
*
7309416 TTAAATGAGAATCTTTAAAATATTTTCAAATGAGAAGT-TTTGAGTC
1 TTAAATGAGAATCTTTAAGATATTTTCAAATGAGAA-TCTTTGAGTC
* * * *
7309462 TTAAATGAAAATTTTTAAGACATTTTCAAATGAGAATCTTTGAATC
1 TTAAATGAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTC
*
7309508 TTAAATGAGAATCTTTAAGAT-GTTTCTAAATGAGAATCTTTGAGTC
1 TTAAATGAGAATCTTTAAGATATTTTC-AAATGAGAATCTTTGAGTC
*
7309554 TTAAATGAGAATCTTTAAGACA-TTTCTAAATGAGAATCTTT
1 TTAAATGAGAATCTTTAAGATATTTTC-AAATGAGAATCTTT
7309595 AAGATATTTT
Statistics
Matches: 161, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
45 5 0.03
46 155 0.96
47 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.39
Consensus pattern (46 bp):
TTAAATGAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTC
Found at i:7309664 original size:118 final size:116
Alignment explanation
Indices: 7309462--7309779 Score: 393
Period size: 118 Copynumber: 2.8 Consensus size: 116
7309452 GTTTTGAGTC
* * * *
7309462 TTAAATGAAAATTTTTAAGACATTTTCAAATGAGAATCTTTGAATCTTAAATGAGAATCTTTAAG
1 TTAAATGAGAATCTTTAAGACATTTTCAAATAAGAATATTTGAATCTTAAATGAGAATCTTTAAG
7309527 ATGTTTCTAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACATT
66 ATGTTTCTAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACATT
* * *
7309578 TCTAAATGAGAATCTTTAAGATATTTTCAAATAATAATATTTTAAGTCTTAAATGAGAATCTTTA
1 T-TAAATGAGAATCTTTAAGACATTTTCAAATAAGAATATTTGAA-TCTTAAATGAGAATCTTTA
*
7309643 AGATGTTT-TCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTTAGACATT
64 AGATGTTTCT-AAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACATT
* * *
7309696 TTCAAATGAGAATCTTT--GA-ATCTT-AAATAAGAATCTTTAAGATATTTTCAAATGAGAATCT
1 TT-AAATGAGAATCTTTAAGACATTTTCAAATAAGAATATTT--GA-ATCTT-AAATGAGAATCT
*
7309757 TT--GA-GTCT-TAAATGAGAATCTTT
61 TTAAGATGTTTCTAAATGAGAATCTTT
7309780 AAGACCTTTC
Statistics
Matches: 180, Mismatches: 14, Indels: 19
0.85 0.07 0.09
Matches are distributed among these distances:
113 14 0.08
114 16 0.09
115 6 0.03
116 7 0.04
117 53 0.29
118 84 0.47
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (116 bp):
TTAAATGAGAATCTTTAAGACATTTTCAAATAAGAATATTTGAATCTTAAATGAGAATCTTTAAG
ATGTTTCTAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACATT
Found at i:7309666 original size:164 final size:162
Alignment explanation
Indices: 7309416--7309758 Score: 501
Period size: 164 Copynumber: 2.1 Consensus size: 162
7309406 TCTTTGAGTC
* * * *
7309416 TTAAATGAGAATCTTTAAAATATTTTCAAATGAGAAGTTTTGAGTCTTAAATGAAAATTTTTAAG
1 TTAAATGAGAATCTTTAAAATATTTTCAAATAAGAAATTTTAAGTCTTAAATGAAAATCTTTAAG
*
7309481 ACATTTTCAAATGAGAATCTTTGAATCTTAAATGAGAATC-TTTA-AGATGTTTCTAAATGAGAA
66 ACATTTTCAAATGAGAATCTTTGAATCTTAAATGAGAATCTTTTAGACAT-TTTC-AAATGAGAA
* *
7309544 TCTTTGAGTCTTAAATGAGAATCTTTAAGACATT
129 TCTTTGAATCTTAAATAAGAATCTTTAAGACATT
* * *
7309578 TCTAAATGAGAATCTTTAAGATATTTTCAAATAATAATATTTTAAGTCTTAAATGAGAATCTTTA
1 T-TAAATGAGAATCTTTAAAATATTTTCAAATAAGAA-ATTTTAAGTCTTAAATGAAAATCTTTA
** *
7309643 AGATGTTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTTAGACATTTTCAAATGAGAA
64 AGACATTTTCAAATGAGAATCTTTGAATCTTAAATGAGAATCTTTTAGACATTTTCAAATGAGAA
*
7309708 TCTTTGAATCTTAAATAAGAATCTTTAAGATATT
129 TCTTTGAATCTTAAATAAGAATCTTTAAGACATT
7309742 TTCAAATGAGAATCTTT
1 TT-AAATGAGAATCTTT
7309759 GAGTCTTAAA
Statistics
Matches: 162, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
162 1 0.01
163 33 0.20
164 117 0.72
165 8 0.05
166 3 0.02
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.40
Consensus pattern (162 bp):
TTAAATGAGAATCTTTAAAATATTTTCAAATAAGAAATTTTAAGTCTTAAATGAAAATCTTTAAG
ACATTTTCAAATGAGAATCTTTGAATCTTAAATGAGAATCTTTTAGACATTTTCAAATGAGAATC
TTTGAATCTTAAATAAGAATCTTTAAGACATT
Found at i:7309738 original size:210 final size:209
Alignment explanation
Indices: 7309367--7309803 Score: 697
Period size: 210 Copynumber: 2.1 Consensus size: 209
7309357 GAAGTTTTCA
* *
7309367 ATTT-TAAATAAGAATCTTTAAGATATTTTCAAATGAAAATCTTTGAGTCTTAAATGAGAATCTT
1 ATTTCTAAATGAGAATCTTTAAGATATTTTCAAATGAAAATCTTTAAGTCTTAAATGAGAATCTT
7309431 TAAAATATTTTCAAATGAGAAGTTTTGAGTCTTAAATGAAAATTTTTAAGACATTTTCAAATGAG
66 TAAAATATTTTCAAATGAGAAGTTTTGAGTCTTAAATGAAAATTTTTAAGACATTTTCAAATGAG
* *
7309496 AATCTTTGAATCTTAAATGAGAATCTTTAAGAT-GTTTCTAAATGAGAATCTTTGAGTCTTAAAT
131 AATCTTTGAATCTTAAATAAGAATCTTTAAGATATTTTC-AAATGAGAATCTTTGAGTCTTAAAT
7309560 GAGAATCTTTAAGAC
195 GAGAATCTTTAAGAC
*
7309575 ATTTCTAAATGAGAATCTTTAAGATATTTTCAAAT-AATAATATTTTAAGTCTTAAATGAGAATC
1 ATTTCTAAATGAGAATCTTTAAGATATTTTCAAATGAA-AAT-CTTTAAGTCTTAAATGAGAATC
* * *
7309639 TTTAAGATGTTTTCAAATGAGAA-TCTTTGAGTCTTAAATGAGAATCTTTT-AGACATTTTCAAA
64 TTTAAAATATTTTCAAATGAGAAGT-TTTGAGTCTTAAATGAAAAT-TTTTAAGACATTTTCAAA
7309702 TGAGAATCTTTGAATCTTAAATAAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTCTTA
127 TGAGAATCTTTGAATCTTAAATAAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTCTTA
7309767 AATGAGAATCTTTAAGAC
192 AATGAGAATCTTTAAGAC
* *
7309785 CTTTC-AAATGAGAAACTTT
1 ATTTCTAAATGAGAATCTTT
7309804 GAGTCTTAAA
Statistics
Matches: 213, Mismatches: 10, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
208 6 0.03
209 46 0.22
210 153 0.72
211 8 0.04
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (209 bp):
ATTTCTAAATGAGAATCTTTAAGATATTTTCAAATGAAAATCTTTAAGTCTTAAATGAGAATCTT
TAAAATATTTTCAAATGAGAAGTTTTGAGTCTTAAATGAAAATTTTTAAGACATTTTCAAATGAG
AATCTTTGAATCTTAAATAAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTCTTAAATG
AGAATCTTTAAGAC
Found at i:7309805 original size:45 final size:46
Alignment explanation
Indices: 7309489--7309824 Score: 366
Period size: 46 Copynumber: 7.3 Consensus size: 46
7309479 AGACATTTTC
* *
7309489 AAATGAGAATCTTT--GA-ATCTT-AAATGAGAATCTTTAAGATGTTTCT
1 AAATGAGAATCTTTAAGATATTTTCAAATGAGAATCTTT--GA-GTCT-T
* * * *
7309535 AAATGAGAATCTTT--GA-GTCTT-AAATGAGAATCTTTAAGACATTTCT
1 AAATGAGAATCTTTAAGATATTTTCAAATGAGAATCTTT--GA-GTCT-T
* * * *
7309581 AAATGAGAATCTTTAAGATATTTTCAAATAATAATATTTTAAGTCTT
1 AAATGAGAATCTTTAAGATATTTTCAAATGAGAAT-CTTTGAGTCTT
*
7309628 AAATGAGAATCTTTAAGATGTTTTCAAATGAGAATCTTTGAGTCTT
1 AAATGAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTCTT
* * *
7309674 AAATGAGAATCTTTTAGACATTTTCAAATGAGAATCTTTGAATCTT
1 AAATGAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTCTT
*
7309720 AAATAAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTCTT
1 AAATGAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTCTT
** *
7309766 AAATGAGAATCTTTAAGA-CCTTTCAAATGAGAAACTTTGAGTCTT
1 AAATGAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTCTT
7309811 AAATGAGAATCTTT
1 AAATGAGAATCTTT
7309825 GAGGTGTGAA
Statistics
Matches: 257, Mismatches: 28, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
45 38 0.15
46 167 0.65
47 33 0.13
48 4 0.02
49 4 0.02
50 8 0.03
51 3 0.01
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (46 bp):
AAATGAGAATCTTTAAGATATTTTCAAATGAGAATCTTTGAGTCTT
Found at i:7309853 original size:38 final size:38
Alignment explanation
Indices: 7309811--7310019 Score: 106
Period size: 38 Copynumber: 5.3 Consensus size: 38
7309801 TTTGAGTCTT
*
7309811 AAATGAGAATCTTTGAGGTGTGAAACCCAAAATTTATC
1 AAATGAGAATCTTTGAGGTGTGAAACTCAAAATTTATC
* * * * * * *
7309849 AAATGTGAATCTTCGA-AT-TCAAA-TGAGAATTTTTTAATTTT
1 AAATGAGAATCTTTGAGGTGTGAAACTCA-AA--ATTT-A--TC
7309890 AAATGAGAATCTTTGAGGTGTGAAACTCAAAATTTATC
1 AAATGAGAATCTTTGAGGTGTGAAACTCAAAATTTATC
* * ** * * *
7309928 AAATGTGAATC-TTCAAAT-TCAAA-TGATAATTTTTAAATTTC
1 AAATGAGAATCTTTGAGGTGTGAAACTCA-AA-ATTT--A--TC
* *
7309969 AAATGAGAATCTTTGAGTTGTGAAACTCAAAATTTGTC
1 AAATGAGAATCTTTGAGGTGTGAAACTCAAAATTTATC
*
7310007 AAATGTGAATCTT
1 AAATGAGAATCTT
7310020 CAAATTCAAA
Statistics
Matches: 122, Mismatches: 31, Indels: 36
0.65 0.16 0.19
Matches are distributed among these distances:
35 3 0.02
36 12 0.10
37 8 0.07
38 42 0.34
39 2 0.02
40 1 0.01
41 30 0.25
42 8 0.07
43 12 0.10
44 4 0.03
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (38 bp):
AAATGAGAATCTTTGAGGTGTGAAACTCAAAATTTATC
Found at i:7309901 original size:79 final size:79
Alignment explanation
Indices: 7309811--7310082 Score: 427
Period size: 79 Copynumber: 3.4 Consensus size: 79
7309801 TTTGAGTCTT
*
7309811 AAATGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCAAATGTGAATCTTCGAATTCAAATGAG
1 AAATGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCAAATGTGAATCTTCAAATTCAAATGAG
* *
7309876 AATTTTTTAATTTT
66 AATTTTTAAATTTC
* *
7309890 AAATGAGAATCTTTGAGGTGTGAAACTCAAAATTTATCAAATGTGAATCTTCAAATTCAAATGAT
1 AAATGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCAAATGTGAATCTTCAAATTCAAATGAG
7309955 AATTTTTAAATTTC
66 AATTTTTAAATTTC
* * *
7309969 AAATGAGAATCTTTGAGTTGTGAAACTCAAAATTTGTCAAATGTGAATCTTCAAATTCAAATGAG
1 AAATGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCAAATGTGAATCTTCAAATTCAAATGAG
*
7310034 AATTTTTGAATTTC
66 AATTTTTAAATTTC
* * * *
7310048 AAATAAGAATCTTTGAGATGTGAAGCCCTAAATTT
1 AAATGAGAATCTTTGAGGTGTGAAACCCAAAATTT
7310083 TGTTAGGATG
Statistics
Matches: 179, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 179 1.00
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (79 bp):
AAATGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCAAATGTGAATCTTCAAATTCAAATGAG
AATTTTTAAATTTC
Found at i:7309951 original size:20 final size:21
Alignment explanation
Indices: 7309926--7309981 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
7309916 TCAAAATTTA
7309926 TCAAATGTGAATCTTCAAA-T
1 TCAAATGTGAATCTTCAAATT
* *
7309946 TCAAATGAT-AATTTTTAAATT
1 TCAAATG-TGAATCTTCAAATT
*
7309967 TCAAATGAGAATCTT
1 TCAAATGTGAATCTT
7309982 TGAGTTGTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 15 0.52
21 14 0.48
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (21 bp):
TCAAATGTGAATCTTCAAATT
Found at i:7310050 original size:21 final size:21
Alignment explanation
Indices: 7310024--7310063 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7310014 AATCTTCAAA
* *
7310024 TTCAAATGAGAATTTTTGAAT
1 TTCAAATAAGAATCTTTGAAT
7310045 TTCAAATAAGAATCTTTGA
1 TTCAAATAAGAATCTTTGA
7310064 GATGTGAAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (21 bp):
TTCAAATAAGAATCTTTGAAT
Found at i:7310641 original size:41 final size:42
Alignment explanation
Indices: 7310529--7310657 Score: 111
Period size: 41 Copynumber: 3.1 Consensus size: 42
7310519 GAGCTTTTTT
* ** * *
7310529 TTTTC-AAAGTCGTTGAGCCTCTGTTTAGAGGAGCCTTTTATTT
1 TTTTCAAAAGTTGTTGAGCCTCTACTTAGAGGAACC-TTTA-TC
*** * *
7310572 TTTTTTCAAGTTGTTGAGCCTTTGCTTAG-GGAAACCTTTATC
1 TTTTCAAAAGTTGTTGAGCCTCTACTTAGAGG-AACCTTTATC
*
7310614 TTTTCAAAAGTTGTT-AGCCTCTACTTAGAGGAGCCTTTATC
1 TTTTCAAAAGTTGTTGAGCCTCTACTTAGAGGAACCTTTATC
7310655 TTT
1 TTT
7310658 ATTTTTTTTT
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
41 23 0.33
42 15 0.21
43 10 0.14
44 22 0.31
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.44
Consensus pattern (42 bp):
TTTTCAAAAGTTGTTGAGCCTCTACTTAGAGGAACCTTTATC
Found at i:7312373 original size:57 final size:58
Alignment explanation
Indices: 7312267--7312484 Score: 323
Period size: 57 Copynumber: 3.8 Consensus size: 58
7312257 AAAAAAAATG
* *
7312267 TTTTAAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAAATTTCTAAAAGATAT
1 TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCTAAAAGATAT
* *
7312325 TTTTGAGGAAAAGTTGAAAGTATCAA-CTTCCTTGAAAATAAAATTTCTAAAAGATAT
1 TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCTAAAAGATAT
* * *
7312382 TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAATTTCAAAAATATATAT
1 TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTC-TAAA-AGATAT
* *
7312442 TTTTAAGAAAAAGTTGAAGGTATCAATTTTCCTT-AAAATAAAA
1 TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
7312485 AAAAAAACCT
Statistics
Matches: 145, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
57 54 0.37
58 43 0.30
59 11 0.08
60 37 0.26
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.36
Consensus pattern (58 bp):
TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCTAAAAGATAT
Found at i:7312391 original size:115 final size:117
Alignment explanation
Indices: 7312267--7312484 Score: 325
Period size: 115 Copynumber: 1.9 Consensus size: 117
7312257 AAAAAAAATG
* * *
7312267 TTTTAAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAAATTTC-TAAA-AGATATTTTTG
1 TTTTAAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCAAAAATAGATATTTTTA
*
7312330 AGGAAAAGTTGAAAGTATCAA-CTTCCTTGAAAATAAAATTTCTAAAAGATAT
66 AGAAAAAGTTGAAAGTATCAATCTTCCTT-AAAATAAAATTTCTAAAAGATAT
* * *
7312382 TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAATTTCAAAAATATATATTTTTA
1 TTTTAAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCAAAAATAGATATTTTTA
* *
7312447 AGAAAAAGTTGAAGGTATCAATTTTCCTTAAAATAAAA
66 AGAAAAAGTTGAAAGTATCAATCTTCCTTAAAATAAAA
7312485 AAAAAAACCT
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
115 45 0.49
116 3 0.03
117 37 0.41
118 6 0.07
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.36
Consensus pattern (117 bp):
TTTTAAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCAAAAATAGATATTTTTA
AGAAAAAGTTGAAAGTATCAATCTTCCTTAAAATAAAATTTCTAAAAGATAT
Found at i:7317622 original size:14 final size:14
Alignment explanation
Indices: 7317603--7317635 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7317593 AAGCTATAAA
7317603 ATATAAATATCA-AT
1 ATATAAATAT-ATAT
7317617 ATATAAATATATAT
1 ATATAAATATATAT
7317631 ATATA
1 ATATA
7317636 TATAGTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.06
14 17 0.94
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATAAATATATAT
Found at i:7323586 original size:11 final size:11
Alignment explanation
Indices: 7323570--7323599 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
7323560 GGCCTAAAAA
7323570 ATATTTTTTTT
1 ATATTTTTTTT
7323581 ATA-TTTTTTT
1 ATATTTTTTTT
7323591 ATATTTTTT
1 ATATTTTTT
7323600 GAGAATTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (11 bp):
ATATTTTTTTT
Found at i:7325605 original size:2 final size:2
Alignment explanation
Indices: 7325598--7325623 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7325588 TACAAACTCC
7325598 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7325624 CATAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7327174 original size:14 final size:14
Alignment explanation
Indices: 7327155--7327194 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
7327145 ATCATATCCG
*
7327155 ATAATTTAAAATAA
1 ATAATTCAAAATAA
7327169 ATAATTCAAAAT-A
1 ATAATTCAAAATAA
7327182 ATACATTCAAAAT
1 ATA-ATTCAAAAT
7327195 TATTTCAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 4 0.17
14 20 0.83
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAATTCAAAATAA
Found at i:7331592 original size:37 final size:37
Alignment explanation
Indices: 7331551--7331638 Score: 90
Period size: 37 Copynumber: 2.4 Consensus size: 37
7331541 TTTACAAGGA
*
7331551 AAAAATGAATCTTGAATAACTTA-TTGCAAGAACCAAC
1 AAAAATGAATCTTGAATAACTTACTT-CAAAAACCAAC
* * * *
7331588 AAAAA-GTACTATTGAATATCTTACTTTAAAAACCAAC
1 AAAAATG-AATCTTGAATAACTTACTTCAAAAACCAAC
*
7331625 AAAAGTGAATCTTG
1 AAAAATGAATCTTG
7331639 CAATTCTGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
36 1 0.03
37 36 0.90
38 3 0.08
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.27
Consensus pattern (37 bp):
AAAAATGAATCTTGAATAACTTACTTCAAAAACCAAC
Found at i:7332697 original size:24 final size:23
Alignment explanation
Indices: 7332654--7332702 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 23
7332644 TAAATCATAA
7332654 ATTTTTATATTTTTATTTATATT
1 ATTTTTATATTTTTATTTATATT
7332677 ATTTTTATATCTTATTA-TTATATT
1 ATTTTTATAT-TT-TTATTTATATT
7332701 AT
1 AT
7332703 ATTTGAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 10 0.42
24 11 0.46
25 3 0.12
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (23 bp):
ATTTTTATATTTTTATTTATATT
Found at i:7333663 original size:20 final size:20
Alignment explanation
Indices: 7333632--7333681 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
7333622 TATGTCTTTT
* *
7333632 TTTTTTAAATATCTAAAATTCC
1 TTTTTTATAT-TCTAAAATT-A
*
7333654 TTTTTTATATTTTAAAATTA
1 TTTTTTATATTCTAAAATTA
7333674 TTTTTTAT
1 TTTTTTAT
7333682 GATATTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 8 0.32
21 8 0.32
22 9 0.36
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTTTATATTCTAAAATTA
Found at i:7334315 original size:28 final size:28
Alignment explanation
Indices: 7334284--7334344 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
7334274 GATTATATTT
* * *
7334284 AATTACATATATATAATTTAAACATAAA
1 AATTACATATATAAAAATTAAAAATAAA
* * *
7334312 AATTATATATGTAAAAATTAAAAATTAA
1 AATTACATATATAAAAATTAAAAATAAA
7334340 AATTA
1 AATTA
7334345 AGTTTAATAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (28 bp):
AATTACATATATAAAAATTAAAAATAAA
Found at i:7335203 original size:26 final size:27
Alignment explanation
Indices: 7335174--7335224 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
7335164 TAATAATAAC
*
7335174 AAATTTATATT-T-TTTATTTTATTTTA
1 AAATTTAT-TTATATTTATTTAATTTTA
7335200 AAATTTATTTATATTTATTTAATTT
1 AAATTTATTTATATTTATTTAATTT
7335225 CGTTTATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 2 0.09
26 9 0.41
27 11 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (27 bp):
AAATTTATTTATATTTATTTAATTTTA
Found at i:7335240 original size:30 final size:31
Alignment explanation
Indices: 7335175--7335255 Score: 78
Period size: 30 Copynumber: 2.7 Consensus size: 31
7335165 AATAATAACA
* *
7335175 AATTTATATTT-TTTATTTTATTTTAAAATT
1 AATTTATATTTATTTAATTTAGTTTAAAATT
* * *
7335205 TATTTATATTTATTTAATTTCGTTT-ATATT
1 AATTTATATTTATTTAATTTAGTTTAAAATT
*
7335235 AATTTAAAATTTATTT-ATTTA
1 AATTT-ATATTTATTTAATTTA
7335256 AATTTATTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
30 22 0.54
31 19 0.46
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (31 bp):
AATTTATATTTATTTAATTTAGTTTAAAATT
Found at i:7335256 original size:20 final size:21
Alignment explanation
Indices: 7335182--7335261 Score: 78
Period size: 21 Copynumber: 3.9 Consensus size: 21
7335172 ACAAATTTAT
* *
7335182 ATTT-TTTATTTTATTTTAAA
1 ATTTATTTATATTAATTTAAA
*
7335202 ATTTATTTATATTTATTT--A
1 ATTTATTTATATTAATTTAAA
*
7335221 ATTTCGTTTATATTAATTTAAA
1 ATTT-ATTTATATTAATTTAAA
7335243 ATTTATTTAT-TTAAATTTA
1 ATTTATTTATATT-AATTTA
7335262 TTTTATTATA
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
19 5 0.10
20 18 0.37
21 21 0.43
22 5 0.10
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (21 bp):
ATTTATTTATATTAATTTAAA
Found at i:7335260 original size:14 final size:14
Alignment explanation
Indices: 7335202--7335301 Score: 60
Period size: 15 Copynumber: 6.6 Consensus size: 14
7335192 TTATTTTAAA
*
7335202 ATTTATTTATATTT
1 ATTTATTTAAATTT
**
7335216 ATTTAATTT-CGTTT
1 ATTT-ATTTAAATTT
7335230 ATATTAATTTAAAATTT
1 AT-TT-ATTT-AAATTT
7335247 ATTTATTTAAATTT
1 ATTTATTTAAATTT
7335261 ATTTTATTATAATATATT
1 A-TTTATT-TAA-AT-TT
*
7335279 -TATTATTATAAATAT
1 AT-TTATT-TAAATTT
7335294 ATTTATTT
1 ATTTATTT
7335302 TTATATATTC
Statistics
Matches: 71, Mismatches: 5, Indels: 20
0.74 0.05 0.21
Matches are distributed among these distances:
14 17 0.24
15 27 0.38
16 9 0.13
17 16 0.23
18 2 0.03
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (14 bp):
ATTTATTTAAATTT
Found at i:7335261 original size:41 final size:41
Alignment explanation
Indices: 7335174--7335280 Score: 114
Period size: 41 Copynumber: 2.6 Consensus size: 41
7335164 TAATAATAAC
* *
7335174 AAATTTATATTTTTTATTTTATTTTAAAATTTATTTATATT
1 AAATTTATATTTTTTATATTAATTTAAAATTTATTTATATT
*
7335215 -TATTTA-ATTTCGTTTATATTAATTTAAAATTTATTTAT-TT
1 AAATTTATATTT--TTTATATTAATTTAAAATTTATTTATATT
* *
7335255 AAATTTAT-TTTATTATAATATATTTA
1 AAATTTATATTTTTTATATTA-ATTTA
7335281 TTATTATAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 11 0.20
40 12 0.22
41 32 0.58
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.63
Consensus pattern (41 bp):
AAATTTATATTTTTTATATTAATTTAAAATTTATTTATATT
Found at i:7335294 original size:18 final size:18
Alignment explanation
Indices: 7335243--7335306 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
7335233 TTAATTTAAA
*
7335243 ATTTATTTATT-TAAATTT
1 ATTTA-TTATTATAAATAT
7335261 A-TT-TTATTAT-AATAT
1 ATTTATTATTATAAATAT
7335276 ATTTATTATTATAAATAT
1 ATTTATTATTATAAATAT
*
7335294 ATTTATTTTTATA
1 ATTTATTATTATA
7335307 TATTCGTTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
15 10 0.25
16 3 0.08
17 9 0.22
18 18 0.45
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTATTATTATAAATAT
Found at i:7335375 original size:48 final size:47
Alignment explanation
Indices: 7335247--7335378 Score: 119
Period size: 48 Copynumber: 2.8 Consensus size: 47
7335237 TTTAAAATTT
* * * * *
7335247 ATTTATTTAAATTTATTTTATTATA-ATATATTTATTATTATAAATAT
1 ATTTATTT-AATTTAATTAATTAAACATATATTTAATATTATAAATAA
**
7335294 ATTTATTT--TTATATATTCGTT-AACATATTATTTAATATTTATAAATAA
1 ATTTATTTAATT-TA-ATTAATTAAACATA-TATTTAATA-TTATAAATAA
*
7335342 ATTTATTTAATTTAATTAATTAAACATAAATTTAATA
1 ATTTATTTAATTTAATTAATTAAACATATATTTAATA
7335379 AAAATATTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
44 2 0.03
45 3 0.04
46 7 0.10
47 16 0.24
48 30 0.44
49 8 0.12
50 2 0.03
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (47 bp):
ATTTATTTAATTTAATTAATTAAACATATATTTAATATTATAAATAA
Found at i:7335506 original size:16 final size:17
Alignment explanation
Indices: 7335480--7335512 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
7335470 TTACAACCTT
7335480 AAAAATATATATTTAAA
1 AAAAATATATATTTAAA
7335497 AAAAAT-TATATTTAAA
1 AAAAATATATATTTAAA
7335513 GCATTATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAAAATATATATTTAAA
Found at i:7348166 original size:20 final size:19
Alignment explanation
Indices: 7348143--7348193 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
7348133 TATATTCGTA
7348143 TTATATAAAATATTAAAATT
1 TTATATAAAATATT-AAATT
** *
7348163 TTATATATTTATATTATATT
1 TTATATA-AAATATTAAATT
7348183 TTATATAAAAT
1 TTATATAAAAT
7348194 TTATCATAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 2 0.08
20 18 0.72
21 5 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTATATAAAATATTAAATT
Found at i:7348362 original size:21 final size:20
Alignment explanation
Indices: 7348319--7348362 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
7348309 TTGTGTCATG
*
7348319 TTATTATATCATATTTGAAA
1 TTATTAAATCATATTTGAAA
* *
7348339 TTATTAAATCTATGTTTGATA
1 TTATTAAATC-ATATTTGAAA
7348360 TTA
1 TTA
7348363 AAAACATCGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (20 bp):
TTATTAAATCATATTTGAAA
Found at i:7357414 original size:21 final size:21
Alignment explanation
Indices: 7357370--7357415 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
7357360 TAAAAGAATG
*** *
7357370 AAAATTTTGAAAAAAGTGATT
1 AAAATTTTGAAAAAACAAAAT
7357391 AAAATTTTGAAAAAACAAAAT
1 AAAATTTTGAAAAAACAAAAT
7357412 AAAA
1 AAAA
7357416 ATGTACCTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (21 bp):
AAAATTTTGAAAAAACAAAAT
Found at i:7357699 original size:3 final size:3
Alignment explanation
Indices: 7357691--7357722 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7357681 AAAATATGGT
7357691 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7357723 TAGAGAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7362429 original size:20 final size:19
Alignment explanation
Indices: 7362404--7362447 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
7362394 TCAAATCGAA
*
7362404 TTATATATTTTTATTAATTT
1 TTATATATTTTTA-AAATTT
7362424 TTATATATTTTTAAAATTT
1 TTATATATTTTTAAAATTT
7362443 TTATA
1 TTATA
7362448 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TTATATATTTTTAAAATTT
Found at i:7362451 original size:11 final size:10
Alignment explanation
Indices: 7362404--7362449 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
7362394 TCAAATCGAA
*
7362404 TTATATATTT
1 TTATAAATTT
*
7362414 TTATTAATTT
1 TTATAAATTT
*
7362424 TTATATATTT
1 TTATAAATTT
7362434 TTA-AAATTT
1 TTATAAATTT
7362443 TTATAAA
1 TTATAAA
7362450 ATAAAAATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
9 8 0.27
10 22 0.73
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TTATAAATTT
Found at i:7362503 original size:22 final size:23
Alignment explanation
Indices: 7362466--7362524 Score: 77
Period size: 22 Copynumber: 2.6 Consensus size: 23
7362456 ATAATTATTT
* *
7362466 TATATATAAATTTATTTAAATA-
1 TATATAAAAATTTATTAAAATAG
7362488 TAT-TAAAAATCTTATTAAAATAG
1 TATATAAAAAT-TTATTAAAATAG
7362511 TATATAAAAATTTA
1 TATATAAAAATTTA
7362525 AATAAATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 6 0.19
22 13 0.41
23 6 0.19
24 7 0.22
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (23 bp):
TATATAAAAATTTATTAAAATAG
Found at i:7363308 original size:10 final size:10
Alignment explanation
Indices: 7363267--7363313 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
7363257 AATACAAAAA
7363267 TATAATTTTT
1 TATAATTTTT
7363277 T-TAATTTTAT
1 TATAATTTT-T
7363287 TA-AATTTATT
1 TATAATTT-TT
7363297 TATAATTTTT
1 TATAATTTTT
*
7363307 TAAAATT
1 TATAATT
7363314 ATAAGTCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
9 7 0.22
10 19 0.59
11 6 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TATAATTTTT
Found at i:7363699 original size:23 final size:23
Alignment explanation
Indices: 7363668--7363712 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7363658 CCTCCCTGAT
*
7363668 AAATTTTATCATTT-TATCGTATA
1 AAATATTAT-ATTTATATCGTATA
7363691 AAATATTATATTTATATCGTAT
1 AAATATTATATTTATATCGTAT
7363713 TTTACATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.51
Consensus pattern (23 bp):
AAATATTATATTTATATCGTATA
Found at i:7363833 original size:15 final size:14
Alignment explanation
Indices: 7363810--7363839 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
7363800 TTTTATATCG
7363810 TTTATTCATATTAT
1 TTTATTCATATTAT
7363824 TTTATATCATATTAT
1 TTTAT-TCATATTAT
7363839 T
1 T
7363840 AAATCGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTATTCATATTAT
Found at i:7363836 original size:21 final size:23
Alignment explanation
Indices: 7363793--7363836 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7363783 ATTTTAAATT
*
7363793 ATATTATTTTTATATCGTTTATTC
1 ATATTATTTTTATATCG-ATATTC
7363817 ATATTA-TTTTATATC-ATATT
1 ATATTATTTTTATATCGATATT
7363837 ATTAAATCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
23 9 0.47
24 6 0.32
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (23 bp):
ATATTATTTTTATATCGATATTC
Found at i:7363838 original size:24 final size:24
Alignment explanation
Indices: 7363793--7363839 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7363783 ATTTTAAATT
*
7363793 ATATTATTTTTATATCGTTTATTC
1 ATATTATTTTTATATCATTTATTC
7363817 ATATTA-TTTTATATCATATTATT
1 ATATTATTTTTATATCAT-TTATT
7363840 AAATCGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (24 bp):
ATATTATTTTTATATCATTTATTC
Done.