Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 37 of 125
Found at i:7364615 original size:18 final size:18
Alignment explanation
Indices: 7364595--7364633 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7364585 AATTTATAAA
7364595 TTTAATTAAATTTTTATAT
1 TTTAA-TAAATTTTTATAT
*
7364614 TTTAATATATTTTTAT-T
1 TTTAATAAATTTTTATAT
7364631 TTT
1 TTT
7364634 TTAATTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 10 0.53
19 5 0.26
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTAATAAATTTTTATAT
Found at i:7364619 original size:19 final size:20
Alignment explanation
Indices: 7364595--7364641 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
7364585 AATTTATAAA
7364595 TTTAATTAAATTTTTA-TAT
1 TTTAATTAAATTTTTATTAT
* *
7364614 TTTAA-TATATTTTTATTTT
1 TTTAATTAAATTTTTATTAT
7364633 TTTAATTAA
1 TTTAATTAA
7364642 TAAAATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 9 0.39
19 12 0.52
20 2 0.09
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTAATTAAATTTTTATTAT
Found at i:7364775 original size:36 final size:36
Alignment explanation
Indices: 7364727--7364797 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
7364717 TTTATACGTT
7364727 AATAAAATAAATTCAAACAACTTAATTTTTATTTTC
1 AATAAAATAAATTCAAACAACTTAATTTTTATTTTC
* * * *
7364763 AATAGAATAAATTCGAATAATTTAATTTTTATTTT
1 AATAAAATAAATTCAAACAACTTAATTTTTATTTT
7364798 AAATCAAACT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (36 bp):
AATAAAATAAATTCAAACAACTTAATTTTTATTTTC
Found at i:7366913 original size:20 final size:20
Alignment explanation
Indices: 7366890--7366943 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
7366880 TATATTTATA
7366890 TTATATAAAATATTAATAAT
1 TTATATAAAATATTAATAAT
** *
7366910 TTATATATTTATATT-ATATT
1 TTATATA-AAATATTAATAAT
7366930 TTATATAAAA-ATTA
1 TTATATAAAATATTA
7366944 CGTATTATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
18 3 0.11
19 1 0.04
20 18 0.67
21 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TTATATAAAATATTAATAAT
Found at i:7367053 original size:13 final size:13
Alignment explanation
Indices: 7366994--7367060 Score: 50
Period size: 13 Copynumber: 5.2 Consensus size: 13
7366984 TTTTATTAAA
7366994 TTTATTTATAATTT
1 TTTATTTAT-ATTT
* *
7367008 TTTA-TTAAAATT
1 TTTATTTATATTT
* *
7367020 TTAAATTATA-TT
1 TTTATTTATATTT
*
7367032 ATT-TTTATATTT
1 TTTATTTATATTT
7367044 TTTATTTATATTAT
1 TTTATTTATATT-T
7367058 TTT
1 TTT
7367061 CATATAATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 5 0.12
12 13 0.32
13 15 0.37
14 8 0.20
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTATTTATATTT
Found at i:7367471 original size:19 final size:21
Alignment explanation
Indices: 7367447--7367487 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
7367437 TGAAGAATCA
7367447 TTTTTCG-CCTTTTT-TTTTT
1 TTTTTCGACCTTTTTCTTTTT
7367466 TTTTTCGACCTTTTTCTTTTT
1 TTTTTCGACCTTTTTCTTTTT
7367487 T
1 T
7367488 ATGATTGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.35
20 7 0.35
21 6 0.30
ACGTcount: A:0.02, C:0.17, G:0.05, T:0.76
Consensus pattern (21 bp):
TTTTTCGACCTTTTTCTTTTT
Found at i:7370144 original size:13 final size:12
Alignment explanation
Indices: 7370125--7370163 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
7370115 AAATTTAAAA
7370125 TTTTTAATATAT
1 TTTTTAATATAT
*
7370137 TATTTTAATATAA
1 T-TTTTAATATAT
7370150 TTTTTAATATAT
1 TTTTTAATATAT
7370162 TT
1 TT
7370164 AAATAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTTTAATATAT
Found at i:7372404 original size:94 final size:95
Alignment explanation
Indices: 7372237--7372425 Score: 344
Period size: 94 Copynumber: 2.0 Consensus size: 95
7372227 TTTCATTATG
7372237 TTCTTAGGTTTAACCTACAGAAGCCGGTTTCCCCAGTAATCCTAACCGGTTGATGGGACAGACAG
1 TTCTTAGGTTTAACCTACAGAAGCCGGTTTCCCCAGTAATCCTAACCGGTTGATGGGACAGACAG
7372302 TATCCAGGATTCCATAGGCCGTCCTTCTGA
66 TATCCAGGATTCCATAGGCCGTCCTTCTGA
* *
7372332 TTCTTAGGTTTAACCTACAGCAGCCGGTTTCCCC-GTAATCCTAACCTGTTGATGGGACAGACAG
1 TTCTTAGGTTTAACCTACAGAAGCCGGTTTCCCCAGTAATCCTAACCGGTTGATGGGACAGACAG
*
7372396 TATGCAGGATTCCATAGGCCGTCCTTCTGA
66 TATCCAGGATTCCATAGGCCGTCCTTCTGA
7372426 CCCGTCTCGT
Statistics
Matches: 91, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
94 58 0.64
95 33 0.36
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (95 bp):
TTCTTAGGTTTAACCTACAGAAGCCGGTTTCCCCAGTAATCCTAACCGGTTGATGGGACAGACAG
TATCCAGGATTCCATAGGCCGTCCTTCTGA
Found at i:7375936 original size:32 final size:31
Alignment explanation
Indices: 7375899--7375965 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 31
7375889 TTTTCAAATG
*
7375899 AATTTAAATAATTTAAATTTT-ATTTAAATTAA
1 AATTTAAATAA--TAAATTTTAAATTAAATTAA
*
7375931 AATTTAAATAATAAATTTTAAATTAAATTTA
1 AATTTAAATAATAAATTTTAAATTAAATTAA
7375962 AATT
1 AATT
7375966 CGATTTAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 8 0.25
31 13 0.41
32 11 0.34
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (31 bp):
AATTTAAATAATAAATTTTAAATTAAATTAA
Found at i:7375937 original size:12 final size:12
Alignment explanation
Indices: 7375920--7375965 Score: 58
Period size: 14 Copynumber: 3.8 Consensus size: 12
7375910 TTTAAATTTT
7375920 ATTTAAATTAAA
1 ATTTAAATTAAA
7375932 ATTTAAATAATAAA
1 ATTTAAAT--TAAA
*
7375946 TTTTAAATT-AA
1 ATTTAAATTAAA
7375957 ATTTAAATT
1 ATTTAAATT
7375966 CGATTTAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 9 0.30
14 11 0.37
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
ATTTAAATTAAA
Found at i:7375964 original size:6 final size:6
Alignment explanation
Indices: 7375908--7375965 Score: 57
Period size: 6 Copynumber: 9.7 Consensus size: 6
7375898 GAATTTAAAT
* * *
7375908 AATTTA AATTT- TATTTA AATTAA AATTTA AATAATA AATTTTA AA-TTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AAT-TTA AA-TTTA AATTTA
7375956 AATTTA AATT
1 AATTTA AATT
7375966 CGATTTAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
5 9 0.21
6 24 0.57
7 8 0.19
8 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AATTTA
Found at i:7375973 original size:11 final size:11
Alignment explanation
Indices: 7375899--7375965 Score: 66
Period size: 11 Copynumber: 5.9 Consensus size: 11
7375889 TTTTCAAATG
7375899 AATTTAAA-T-
1 AATTTAAATTA
*
7375908 AATTTAAATTT
1 AATTTAAATTA
*
7375919 TATTTAAATTAA
1 AATTTAAATT-A
7375931 AATTTAAATAATA
1 AATTTAAAT--TA
7375944 AATTTTAAATTA
1 AA-TTTAAATTA
7375956 AATTTAAATT
1 AATTTAAATT
7375966 CGATTTAATA
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
9 8 0.16
10 1 0.02
11 17 0.35
12 12 0.24
13 3 0.06
14 8 0.16
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
AATTTAAATTA
Found at i:7376681 original size:9 final size:9
Alignment explanation
Indices: 7376667--7376709 Score: 50
Period size: 9 Copynumber: 4.3 Consensus size: 9
7376657 TATAAAAACA
7376667 TAATTTTAT
1 TAATTTTAT
7376676 TAATTTTAT
1 TAATTTTAT
7376685 TAAATTTATAT
1 T-AATTT-TAT
7376696 ATAATTATTAT
1 -TAATT-TTAT
7376707 TAA
1 TAA
7376710 AATTTTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
9 10 0.33
10 8 0.27
11 10 0.33
12 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TAATTTTAT
Found at i:7378219 original size:4 final size:4
Alignment explanation
Indices: 7378212--7378244 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
7378202 AAACACACAC
*
7378212 ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
7378245 ATGCATTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.27
Consensus pattern (4 bp):
ACAT
Found at i:7384518 original size:27 final size:27
Alignment explanation
Indices: 7384450--7384518 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 27
7384440 CAAGGAGGGT
* *
7384450 GAGGGAATGGTGGTGGCCTTGGGTGAG
1 GAGGGAATGGTTGTGGCCATGGGTGAG
* *
7384477 GA--GTATGGTTCTGGCCAAT-GGTGAG
1 GAGGGAATGGTTGTGGCC-ATGGGTGAG
7384502 GAGGGAATGGTTGTGGC
1 GAGGGAATGGTTGTGGC
7384519 GGGTGAGTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
25 19 0.58
26 1 0.03
27 13 0.39
ACGTcount: A:0.17, C:0.09, G:0.49, T:0.25
Consensus pattern (27 bp):
GAGGGAATGGTTGTGGCCATGGGTGAG
Found at i:7389063 original size:18 final size:17
Alignment explanation
Indices: 7389037--7389111 Score: 59
Period size: 18 Copynumber: 4.5 Consensus size: 17
7389027 ATTTTATTCG
7389037 AAATT-AATAAAATATTA
1 AAATTAAATAAAATA-TA
**
7389054 ATTTTAAATATAAATATA
1 AAATTAAATA-AAATATA
7389072 AAATTAAAT-AAATA-A
1 AAATTAAATAAAATATA
* *
7389087 ATATATAATTAAAAT-TA
1 AAAT-TAAATAAAATATA
7389104 AAATTAAA
1 AAATTAAA
7389112 AAATAAATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 11
0.70 0.12 0.17
Matches are distributed among these distances:
15 4 0.09
16 12 0.27
17 11 0.24
18 13 0.29
19 5 0.11
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATTAAATAAAATATA
Found at i:7389087 original size:26 final size:27
Alignment explanation
Indices: 7389058--7389122 Score: 84
Period size: 26 Copynumber: 2.5 Consensus size: 27
7389048 ATATTAATTT
7389058 TAAATATAAATATAAAATT-AAATAAA
1 TAAATATAAATATAAAATTAAAATAAA
*
7389084 TAAATATATAAT-TAAAATTAAAATTAA
1 TAAATATA-AATATAAAATTAAAATAAA
7389111 -AAA-ATAAATATA
1 TAAATATAAATATA
7389123 TACTTGATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
24 3 0.09
25 5 0.14
26 18 0.51
27 9 0.26
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (27 bp):
TAAATATAAATATAAAATTAAAATAAA
Found at i:7389839 original size:17 final size:18
Alignment explanation
Indices: 7389813--7389847 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7389803 AAAATATTTT
7389813 TTTATAA-TTTTATTAAA
1 TTTATAATTTTTATTAAA
*
7389830 TTTATGATTTTTATTAAA
1 TTTATAATTTTTATTAAA
7389848 ATTTTAAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (18 bp):
TTTATAATTTTTATTAAA
Found at i:7398094 original size:73 final size:74
Alignment explanation
Indices: 7398008--7398157 Score: 257
Period size: 73 Copynumber: 2.0 Consensus size: 74
7397998 TACGAAGTAA
*
7398008 ATTTAACAAATACCTAGGGCTATAAACAAACTGAATATG-AACAAATGTATATCTAAGGTTTGTT
1 ATTTAACAAATACCTAGGGCTATAAACAAACTGAATATGAAACAAATGTAAATCTAAGGTTTGTT
7398072 CATTTATTT
66 CATTTATTT
7398081 ATTTAACAAATACCTAGGGCTATAAACAAACTGAATATGAACAAACAAATGTAAATCTAAGGTTT
1 ATTTAACAAATACCTAGGGCTATAAACAAACTGAATATG---AAACAAATGTAAATCTAAGGTTT
7398146 GTTCATTTATTT
63 GTTCATTTATTT
7398158 TTACAAGTGT
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
73 39 0.54
77 33 0.46
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (74 bp):
ATTTAACAAATACCTAGGGCTATAAACAAACTGAATATGAAACAAATGTAAATCTAAGGTTTGTT
CATTTATTT
Found at i:7399753 original size:16 final size:16
Alignment explanation
Indices: 7399720--7399781 Score: 60
Period size: 16 Copynumber: 4.1 Consensus size: 16
7399710 TATATCTAAA
*
7399720 ATATATTTTTATTATTT
1 ATATAATTTTA-TATTT
*
7399737 ATTTAATTTTATATTT
1 ATATAATTTTATATTT
*
7399753 ATATAATTAT-TATTT
1 ATATAATTTTATATTT
7399768 A-AT-ATTTTA-ATTT
1 ATATAATTTTATATTT
7399781 A
1 A
7399782 AAATATTAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
13 9 0.23
14 2 0.05
15 6 0.15
16 13 0.33
17 9 0.23
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATATAATTTTATATTT
Found at i:7399782 original size:13 final size:13
Alignment explanation
Indices: 7399742--7399797 Score: 51
Period size: 13 Copynumber: 4.1 Consensus size: 13
7399732 TATTTATTTA
7399742 ATTTTATATTTATAT
1 ATTTTA-ATTTA-AT
7399757 AATTATT-ATTTAAT
1 -ATT-TTAATTTAAT
*
7399771 ATTTTAATTTAAA
1 ATTTTAATTTAAT
*
7399784 ATATTAATTTAAT
1 ATTTTAATTTAAT
7399797 A
1 A
7399798 AAAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
12 2 0.06
13 21 0.60
14 2 0.06
15 5 0.14
16 3 0.09
17 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATTTTAATTTAAT
Found at i:7400232 original size:13 final size:13
Alignment explanation
Indices: 7400214--7400239 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7400204 ACGAGCTTGA
7400214 AAAGTGGGGTGCT
1 AAAGTGGGGTGCT
7400227 AAAGTGGGGTGCT
1 AAAGTGGGGTGCT
7400240 GTTGTTGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.46, T:0.23
Consensus pattern (13 bp):
AAAGTGGGGTGCT
Found at i:7400676 original size:23 final size:23
Alignment explanation
Indices: 7400657--7400769 Score: 75
Period size: 26 Copynumber: 4.6 Consensus size: 23
7400647 TGAATTTTTT
7400657 AATATTAAATAAATATATTTATA
1 AATATTAAATAAATATATTTATA
* *
7400680 AATATATAAAAATAAACATATTTATG
1 AATAT-T--AAATAAATATATTTATA
* **
7400706 AATAATAAATAAATTATAATCAAATA
1 AATATTAAATAAA-TAT-AT-TTATA
* *
7400732 AAT-TTAAATAAATAAATTTTAAA
1 AATATTAAATAAATATA-TTTATA
*
7400755 AAAATATAAATAAAT
1 AATAT-TAAATAAAT
7400770 CTTAAAATAT
Statistics
Matches: 68, Mismatches: 13, Indels: 16
0.70 0.13 0.16
Matches are distributed among these distances:
23 17 0.25
24 7 0.10
25 20 0.29
26 24 0.35
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.35
Consensus pattern (23 bp):
AATATTAAATAAATATATTTATA
Found at i:7400700 original size:26 final size:25
Alignment explanation
Indices: 7400663--7400714 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
7400653 TTTTAATATT
*
7400663 AAATAAATATATTTATAAATATATAA
1 AAATAAACATATTTATAAATA-ATAA
*
7400689 AAATAAACATATTTATGAATAATAA
1 AAATAAACATATTTATAAATAATAA
7400714 A
1 A
7400715 TAAATTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (25 bp):
AAATAAACATATTTATAAATAATAA
Found at i:7400752 original size:15 final size:15
Alignment explanation
Indices: 7400709--7400760 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
7400699 ATTTATGAAT
*
7400709 AATAAATAAATTAT-
1 AATAAATAAATTTTA
7400723 AATCAAATAAA-TTTA
1 AAT-AAATAAATTTTA
7400738 AATAAATAAATTTTA
1 AATAAATAAATTTTA
*
7400753 AAAAAATA
1 AATAAATA
7400761 TAAATAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
14 12 0.36
15 21 0.64
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAAATAAATTTTA
Found at i:7400768 original size:29 final size:29
Alignment explanation
Indices: 7400709--7400769 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
7400699 ATTTATGAAT
** *
7400709 AATAAATAAATTATAATCAAATAAATTTA
1 AATAAATAAATTATAAAAAAATAAATATA
*
7400738 AATAAATAAATTTTAAAAAAATATAA-ATA
1 AATAAATAAATTATAAAAAAATA-AATATA
7400767 AAT
1 AAT
7400770 CTTAAAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 25 0.93
30 2 0.07
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (29 bp):
AATAAATAAATTATAAAAAAATAAATATA
Found at i:7401664 original size:26 final size:26
Alignment explanation
Indices: 7401607--7401664 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
7401597 TTATTATACT
*
7401607 TTTTTTAATGTGATATCTAAATAAAA
1 TTTTTTAATATGATATCTAAATAAAA
** * * *
7401633 AATTTTAATATGATATTTAAATTACA
1 TTTTTTAATATGATATCTAAATAAAA
7401659 TTTTTT
1 TTTTTT
7401665 GTGTATTAAG
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (26 bp):
TTTTTTAATATGATATCTAAATAAAA
Found at i:7405240 original size:11 final size:11
Alignment explanation
Indices: 7405210--7405254 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
7405200 AGATAATTGA
*
7405210 AAATATGATAT
1 AAATATAATAT
7405221 GATAATATAATAT
1 -A-AATATAATAT
7405234 AAATATAATAT
1 AAATATAATAT
*
7405245 AAAAATAATA
1 AAATATAATA
7405255 AGATTTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
11 19 0.63
12 2 0.07
13 9 0.30
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (11 bp):
AAATATAATAT
Found at i:7410872 original size:24 final size:24
Alignment explanation
Indices: 7410845--7410895 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
7410835 TCTGATATCA
7410845 TGTG-AAAAAACTAAGAAATAAAAC
1 TGTGTAAAAAACTAAGAAA-AAAAC
* *
7410869 TGTGTAGAAAACTAAGAGAAAAAC
1 TGTGTAAAAAACTAAGAAAAAAAC
7410893 TGT
1 TGT
7410896 TCATTAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 12 0.50
25 12 0.50
ACGTcount: A:0.55, C:0.08, G:0.18, T:0.20
Consensus pattern (24 bp):
TGTGTAAAAAACTAAGAAAAAAAC
Found at i:7411048 original size:22 final size:22
Alignment explanation
Indices: 7411020--7411063 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7411010 TTTTTTTGTC
**
7411020 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAAATACAAATA
7411042 CTTAATTCTAGAAATACAAATA
1 CTTAATTCTAGAAATACAAATA
7411064 TAAATGTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAAATACAAATA
Found at i:7411075 original size:22 final size:22
Alignment explanation
Indices: 7411033--7411075 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7411023 AATTCTAGGG
* *
7411033 ATACAAATACTTAATTCTAGAA
1 ATACAAATACTAAATTATAGAA
7411055 ATACAAATA-TAAATGTATAGA
1 ATACAAATACTAAAT-TATAGA
7411076 TTACAAGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.53, C:0.09, G:0.07, T:0.30
Consensus pattern (22 bp):
ATACAAATACTAAATTATAGAA
Found at i:7421262 original size:9 final size:9
Alignment explanation
Indices: 7421248--7421277 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7421238 GAACGAAGAT
7421248 GAAATGGTG
1 GAAATGGTG
7421257 GAAATGGTG
1 GAAATGGTG
*
7421266 GAAATGGAG
1 GAAATGGTG
7421275 GAA
1 GAA
7421278 CTAGGCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (9 bp):
GAAATGGTG
Found at i:7425307 original size:15 final size:17
Alignment explanation
Indices: 7425278--7425314 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
7425268 GACGTCAATT
*
7425278 TAAATATTAATTTAA-A
1 TAAATATTAAATTAATA
7425294 TAAA-ATTAAATTAATA
1 TAAATATTAAATTAATA
7425310 TAAAT
1 TAAAT
7425315 TTTTTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATATTAAATTAATA
Found at i:7431000 original size:20 final size:19
Alignment explanation
Indices: 7430976--7431020 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
7430966 AATTAATTTA
*
7430976 AAATAATAATTTATATTATT
1 AAATAAAAATTTAT-TTATT
*
7430996 TAATAAAAAATTTATTTATT
1 AAAT-AAAAATTTATTTATT
7431016 AAATA
1 AAATA
7431021 CATATATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
19 1 0.05
20 11 0.52
21 9 0.43
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AAATAAAAATTTATTTATT
Found at i:7431005 original size:27 final size:27
Alignment explanation
Indices: 7430932--7431006 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
7430922 AAATGTTTAT
* *
7430932 TAATATATATT-TTTAATAAAAATATAT
1 TAATTTATATTATTTAATAAAAA-ATAA
**
7430959 TAATTT-TA--A-TTAATTTAAAATAA
1 TAATTTATATTATTTAATAAAAAATAA
7430982 TAATTTATATTATTTAATAAAAAAT
1 TAATTTATATTATTTAATAAAAAAT
7431007 TTATTTATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
23 9 0.24
24 10 0.27
26 3 0.08
27 15 0.41
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (27 bp):
TAATTTATATTATTTAATAAAAAATAA
Found at i:7431015 original size:23 final size:23
Alignment explanation
Indices: 7430939--7431016 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
7430929 TATTAATATA
7430939 TATT-TTTAATAAAAATATATTAATTT
1 TATTATTTAATAAAAA-AT-TT-A-TT
7430965 TAATTAATTTAA-AATAATAATTTA--
1 T-ATT-ATTTAATAA-AA-AATTTATT
7430989 TATTATTTAATAAAAAATTTATT
1 TATTATTTAATAAAAAATTTATT
7431012 TATTA
1 TATTA
7431017 AATACATATA
Statistics
Matches: 44, Mismatches: 0, Indels: 19
0.70 0.00 0.30
Matches are distributed among these distances:
21 6 0.14
22 8 0.18
23 10 0.23
24 1 0.02
26 1 0.02
27 4 0.09
28 4 0.09
29 9 0.20
30 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TATTATTTAATAAAAAATTTATT
Found at i:7431821 original size:29 final size:31
Alignment explanation
Indices: 7431789--7431857 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 31
7431779 TTTCTTAGAT
7431789 ATATAAATATT-T-ATAAAAT-TTTTTTTTAA
1 ATATAAATATTCTGAT-AAATGTTTTTTTTAA
7431818 ATATAAAT-TTCTGATAAATGTTTTTTTTAA
1 ATATAAATATTCTGATAAATGTTTTTTTTAA
*
7431848 TTA-AAATATT
1 ATATAAATATT
7431858 ATATTTTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
28 2 0.06
29 17 0.49
30 16 0.46
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (31 bp):
ATATAAATATTCTGATAAATGTTTTTTTTAA
Found at i:7442230 original size:20 final size:19
Alignment explanation
Indices: 7442206--7442250 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
7442196 AATTAATTTA
*
7442206 AAATAATAATTTATATTATT
1 AAATAAAAATTTAT-TTATT
*
7442226 TAATAAAAAATTTATTTATT
1 AAAT-AAAAATTTATTTATT
7442246 AAATA
1 AAATA
7442251 TATATAGAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
19 1 0.05
20 11 0.52
21 9 0.43
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AAATAAAAATTTATTTATT
Found at i:7442245 original size:23 final size:23
Alignment explanation
Indices: 7442168--7442246 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
7442158 TATTAATATA
*
7442168 TATTTTTTAATAAAAATATATTAATTT
1 TATTATTTAATAAAAA-AT-TT-A-TT
7442195 TAATTAATTTAA-AATAATAATTTA--
1 T-ATT-ATTTAATAA-AA-AATTTATT
7442219 TATTATTTAATAAAAAATTTATT
1 TATTATTTAATAAAAAATTTATT
7442242 TATTA
1 TATTA
7442247 AATATATATA
Statistics
Matches: 44, Mismatches: 1, Indels: 18
0.70 0.02 0.29
Matches are distributed among these distances:
21 6 0.14
22 8 0.18
23 10 0.23
24 1 0.02
27 2 0.05
28 7 0.16
29 9 0.20
30 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTATTTAATAAAAAATTTATT
Found at i:7442552 original size:19 final size:18
Alignment explanation
Indices: 7442501--7442552 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
7442491 ATAAATTATT
*
7442501 TAATTTTTTAAATTAAAA
1 TAATTTATTAAATTAAAA
* *
7442519 TAAAATTATTAAATTAAGA
1 T-AATTTATTAAATTAAAA
7442538 TAATTTATTATAATT
1 TAATTTATTA-AATT
7442553 CTTGTTCATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 9 0.32
19 19 0.68
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
TAATTTATTAAATTAAAA
Found at i:7445969 original size:24 final size:24
Alignment explanation
Indices: 7445942--7445987 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
7445932 ATTTTTTATT
7445942 TTTTAAATATCTAAAATT-TTTTCA
1 TTTTAAAT-TCTAAAATTATTTTCA
* *
7445966 TTTTATATTTTAAAATTATTTT
1 TTTTAAATTCTAAAATTATTTT
7445988 TGATTTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTAAATTCTAAAATTATTTTCA
Found at i:7448208 original size:23 final size:24
Alignment explanation
Indices: 7448174--7448221 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
7448164 AGAATCCCTG
7448174 AAATTTATTA-TTTTATTTAAATA
1 AAATTTATTATTTTTATTTAAATA
7448197 AAATCTTA-TATTTTTATTTAAATA
1 AAAT-TTATTATTTTTATTTAAATA
7448221 A
1 A
7448222 TACTAAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
AAATTTATTATTTTTATTTAAATA
Found at i:7448372 original size:30 final size:29
Alignment explanation
Indices: 7448336--7448436 Score: 107
Period size: 30 Copynumber: 3.4 Consensus size: 29
7448326 ATTTTAAATA
* *
7448336 AAAAATTGATTTGAGTACAAATTAAAAGAT
1 AAAAATTTATTTGAGTA-AAATTAAAAGTT
7448366 AAAAATTTATTT-AGTTATAAATTAAAA-TT
1 AAAAATTTATTTGAG-TA-AAATTAAAAGTT
* *
7448395 AAAGAATTTATTTGATTAAAAATAAAAGTT
1 AAA-AATTTATTTGAGTAAAATTAAAAGTT
*
7448425 AAAAACTTATTT
1 AAAAATTTATTT
7448437 AAGCATGATA
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
29 22 0.36
30 38 0.62
31 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (29 bp):
AAAAATTTATTTGAGTAAAATTAAAAGTT
Found at i:7448654 original size:2 final size:2
Alignment explanation
Indices: 7448647--7448677 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7448637 AATTTCACTT
7448647 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7448678 ATTATTTACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7451920 original size:13 final size:12
Alignment explanation
Indices: 7451888--7451931 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
7451878 GATATTGCCT
* *
7451888 TTTCTTTTTCTA
1 TTTCTTTTTTTC
*
7451900 TTTGTTTTTTTCC
1 TTTCTTTTTTT-C
7451913 TTTCTTTTTTTC
1 TTTCTTTTTTTC
7451925 TTTCTTT
1 TTTCTTT
7451932 GTGTTGTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (12 bp):
TTTCTTTTTTTC
Found at i:7452105 original size:2 final size:2
Alignment explanation
Indices: 7452098--7452146 Score: 73
Period size: 2 Copynumber: 24.5 Consensus size: 2
7452088 GTGAAAAATC
*
7452098 AT AT AT AT A- AA AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT
7452140 AT AT AT A
1 AT AT AT A
7452147 AGAGAAGTGA
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
1 1 0.02
2 41 0.93
3 2 0.05
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7452116 original size:16 final size:16
Alignment explanation
Indices: 7452091--7452138 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
7452081 CCTTAATGTG
7452091 AAAA-ATCATATATAT
1 AAAATATCATATATAT
7452106 AAAATATCATATATAT
1 AAAATATCATATATAT
*
7452122 ATATATAT-ATATATAT
1 A-AAATATCATATATAT
7452138 A
1 A
7452139 TATATATAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 4 0.13
16 21 0.70
17 5 0.17
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (16 bp):
AAAATATCATATATAT
Found at i:7458422 original size:42 final size:42
Alignment explanation
Indices: 7458374--7458457 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
7458364 TTGGTAGGAT
* *
7458374 AATCTGATTATGGATGTTTATGTTTATGACCATTTGACTGAG
1 AATCTGATTATGGATGTCTATGTTTATAACCATTTGACTGAG
7458416 AATCTGATTATGGATGTCTATGTTTATAACCATTTGACTGAG
1 AATCTGATTATGGATGTCTATGTTTATAACCATTTGACTGAG
7458458 TGCTAATGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.42
Consensus pattern (42 bp):
AATCTGATTATGGATGTCTATGTTTATAACCATTTGACTGAG
Found at i:7461365 original size:19 final size:19
Alignment explanation
Indices: 7461341--7461378 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7461331 ATCAGATAAT
*
7461341 AAATTCAATGAGAAAAGAG
1 AAATTCAATAAGAAAAGAG
7461360 AAATTCAATAAGAAAAGAG
1 AAATTCAATAAGAAAAGAG
7461379 GGTCAAGTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.61, C:0.05, G:0.18, T:0.16
Consensus pattern (19 bp):
AAATTCAATAAGAAAAGAG
Found at i:7469486 original size:680 final size:684
Alignment explanation
Indices: 7468180--7469509 Score: 2280
Period size: 680 Copynumber: 1.9 Consensus size: 684
7468170 TTCAGTTGGG
*
7468180 GGAGATGGCTTGGAAGCAGCTTTTTCTGATTTCTTTTCAGCAGAAGCAGCAGGTGCTACACCCTC
1 GGAGATGGCTCGGAAGCAGCTTTTTCTGATTTCTTTTCAGCAGAAGCAGCAGGTGCTACACCCTC
*
7468245 AGCAGACTTTGAAATGACAGCAATCCTGTTACCTGGTTCCACGGTATCTCCTTCCTTGGCTACAT
66 AGCAGACTTTGAAATGACAGCAATCCTGTTACCTGGTTCCACGGTATCTCCTTCCTTGGCCACAT
*
7468310 ACTGCCAGGAATTAATAACACTAAAGTTCAGGATCCAATCCACTTCCCTTGTTCCCAGAAATGAG
131 ACTGCCAAGAATTAATAACACTAAAGTTCAGGATCCAATCCACTTCCCTTGTTCCCAGAAATGAG
*
7468375 AAGGTAGAAGTCTAGGAATGACCAACAAGCTAGACATGTGCGTGCGTGAGTGCATGTGAGACCCA
196 AAGGTAGAAGTCTAGGAATGACCAACAAGCTAGACATGTGCATGC--GAGTGCATGTGAGACCCA
*
7468440 AAGATCCAGAATTGTTGATATATTACCTCTTGTAGCACACCATCTTGGGGACTAGTAACATCAAT
259 AAGATCCAGAATTGTTGACATATTACCTCTTGTAGCACACCATCTTGGGGACTAGTAACATCAAT
* *
7468505 TGTTACCTGATGAAAATAAACACTGAAGGTATTAGGGGTATAAACAAATATCACTTCTCAATAAA
324 TGTTACCTGATGAAAATAAACACTGAAGGTATTAGGAGTATAAACAAATATCAATTCTCAATAAA
*
7468570 GAAAAGGTCAAGAATGGTACCTTATCAGTTTCTATTTGAGCAATGGGTTCGTCAGCTGCTACTCT
389 GAAAAGGTCAAGAATAGTACCTTATCAGTTTCTATTTGAGCAATGGGTTCGTCAGCTGCTACTCT
*
7468635 ATCACCAGGTTCTGCTCCCAAAAATTCAGATACATCCACAATAAAGCACTTACAACCATGAAAAT
454 ATCACCAGGTTCTGCTCCCAAAAATTCAGATACATCCACAATAAAGCACTTACAACCATGAAAAC
*
7468700 GAATATGTCCAGAGAATTGATAGAAATCACATCAGTGGAAAACATACTTTTCAAGAATGTAGCCA
519 GAATATGTCCAGAGAATGGATAGAAATCACATCAGTGGAAAACATACTTTTCAAGAATGTAGCCA
7468765 AAGTGCCATCAGATATTGATTCTCCCATGAAAGGGACAACAGCATCAACCAGATCCCCTTCATCA
584 AAGTGCCATCAGATATTGATTCTCCCATGAAAGGGACAACAGCATCAACCAGATCCCCTTCATCA
7468830 TATGATGGGGCTTTAGGCTTCTCCACAGTTTCAGCT
649 TATGATGGGGCTTTAGGCTTCTCCACAGTTTCAGCT
**
7468866 GGAGATGGCTCGGAAGCAGCTTTTTCTGATTTCTTTTCAGCAGGGGCAGCAGGTGCTACACCCTC
1 GGAGATGGCTCGGAAGCAGCTTTTTCTGATTTCTTTTCAGCAGAAGCAGCAGGTGCTACACCCTC
*
7468931 AGCAGACTTTGAAATGACAGCAATCCTGTTACCTGGTTCCACTGTATCTCCTTCCTTGGCCACAT
66 AGCAGACTTTGAAATGACAGCAATCCTGTTACCTGGTTCCACGGTATCTCCTTCCTTGGCCACAT
* *
7468996 ACTGGCAAGAATT-ATAACACTAAAGTTCAGGATCCAATCCACTTCTCTTGTTCCCAGAAATG-G
131 ACTGCCAAGAATTAATAACACTAAAGTTCAGGATCCAATCCACTTCCCTTGTTCCCAGAAATGAG
* *
7469059 AAAGGTAGGAGTCTAGGAATGACCAACAAGCTAGACATGTGCATGC-A-TGCATGTGTGACCCAA
196 -AAGGTAGAAGTCTAGGAATGACCAACAAGCTAGACATGTGCATGCGAGTGCATGTGAGACCCAA
* *
7469122 AGATTCAGATTTGTTGACATATTACCTCTTGTAGCACACCATCTTGGGGACT-GCTAACATCAAT
260 AGATCCAGAATTGTTGACATATTACCTCTTGTAGCACACCATCTTGGGGACTAG-TAACATCAAT
** * *
7469186 TGTTACCTGATGAAAATAAATGCTGAGGGTATTAGGAGTAT-AACAAATATCAATTCTCAATGAA
324 TGTTACCTGATGAAAATAAACACTGAAGGTATTAGGAGTATAAACAAATATCAATTCTCAATAAA
* *
7469250 GAAAAGGTCAGGAATAGTACCTTATCAGTTTCTATTTGAGCAATTGGTTCGTCAGCTGCTACTCT
389 GAAAAGGTCAAGAATAGTACCTTATCAGTTTCTATTTGAGCAATGGGTTCGTCAGCTGCTACTCT
* *
7469315 ATCACCAGGTTCTGCTCTCAAAAATTCAGATACATCCACAATCAAGCACTTACAACCATGAAAAC
454 ATCACCAGGTTCTGCTCCCAAAAATTCAGATACATCCACAATAAAGCACTTACAACCATGAAAAC
* *
7469380 GAATATG-CCTAGAGAATGGAT-GAAAATCACATTAGTGGAAAACATACTTTTCAAGAATGTTGC
519 GAATATGTCC-AGAGAATGGATAG-AAATCACATCAGTGGAAAACATACTTTTCAAGAATGTAGC
*
7469443 CAAAGTGCCATCAGATATTGATTCTCCCATGAAAGGGACAACAGCATCAACCAGATCTCCTTCAT
582 CAAAGTGCCATCAGATATTGATTCTCCCATGAAAGGGACAACAGCATCAACCAGATCCCCTTCAT
7469508 CA
647 CA
7469510 CAATTAAATT
Statistics
Matches: 610, Mismatches: 30, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
679 3 0.00
680 267 0.44
681 111 0.18
682 1 0.00
684 1 0.00
685 91 0.15
686 136 0.22
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (684 bp):
GGAGATGGCTCGGAAGCAGCTTTTTCTGATTTCTTTTCAGCAGAAGCAGCAGGTGCTACACCCTC
AGCAGACTTTGAAATGACAGCAATCCTGTTACCTGGTTCCACGGTATCTCCTTCCTTGGCCACAT
ACTGCCAAGAATTAATAACACTAAAGTTCAGGATCCAATCCACTTCCCTTGTTCCCAGAAATGAG
AAGGTAGAAGTCTAGGAATGACCAACAAGCTAGACATGTGCATGCGAGTGCATGTGAGACCCAAA
GATCCAGAATTGTTGACATATTACCTCTTGTAGCACACCATCTTGGGGACTAGTAACATCAATTG
TTACCTGATGAAAATAAACACTGAAGGTATTAGGAGTATAAACAAATATCAATTCTCAATAAAGA
AAAGGTCAAGAATAGTACCTTATCAGTTTCTATTTGAGCAATGGGTTCGTCAGCTGCTACTCTAT
CACCAGGTTCTGCTCCCAAAAATTCAGATACATCCACAATAAAGCACTTACAACCATGAAAACGA
ATATGTCCAGAGAATGGATAGAAATCACATCAGTGGAAAACATACTTTTCAAGAATGTAGCCAAA
GTGCCATCAGATATTGATTCTCCCATGAAAGGGACAACAGCATCAACCAGATCCCCTTCATCATA
TGATGGGGCTTTAGGCTTCTCCACAGTTTCAGCT
Found at i:7472197 original size:24 final size:24
Alignment explanation
Indices: 7472135--7472197 Score: 56
Period size: 25 Copynumber: 2.6 Consensus size: 24
7472125 TTTGATTTAT
* * *
7472135 TGATTTTTAAAT-TTATTTCGATT
1 TGATTTTTAATTATTATTTCAATA
* * *
7472158 TGTTTTTTTATATATTATTTTAATA
1 TGATTTTTAAT-TATTATTTCAATA
7472183 TGATTTTTAATTATT
1 TGATTTTTAATTATT
7472198 TAAATAGATT
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
23 8 0.27
24 5 0.17
25 17 0.57
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (24 bp):
TGATTTTTAATTATTATTTCAATA
Found at i:7472270 original size:20 final size:20
Alignment explanation
Indices: 7472234--7472272 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7472224 ATTTTTATTT
*
7472234 TATAAAAAGTTAAAAAAATA
1 TATAAAAAGCTAAAAAAATA
7472254 TATAAAAA-CTAATAAAAAT
1 TATAAAAAGCTAA-AAAAAT
7472273 TAATAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
TATAAAAAGCTAAAAAAATA
Found at i:7473037 original size:19 final size:19
Alignment explanation
Indices: 7473013--7473055 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
7473003 TTATTTATTT
** *
7473013 TATAAAAATTAAATATATA
1 TATAAAAACAAAAAATATA
7473032 TATAAAAACAAAAAATATA
1 TATAAAAACAAAAAATATA
7473051 TATAA
1 TATAA
7473056 TTCAGTTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (19 bp):
TATAAAAACAAAAAATATA
Found at i:7473685 original size:30 final size:30
Alignment explanation
Indices: 7473649--7473762 Score: 102
Period size: 30 Copynumber: 3.8 Consensus size: 30
7473639 AACCTCCAAG
* *
7473649 CCCACCACCTGCACCAGCTCCACCGCCGAA
1 CCCACCACCAGCACCAGCTCCACCACCGAA
* *
7473679 CCCACCACCAGCGCCAGCTCCACCACCGAG
1 CCCACCACCAGCACCAGCTCCACCACCGAA
* * * ** *
7473709 TCCACCTCCAGCTCCTCCGCCACCACCGAA
1 CCCACCACCAGCACCAGCTCCACCACCGAA
* * * *
7473739 CCCTCCTCCACCTCCAGCTCCACC
1 CCCACCACCAGCACCAGCTCCACC
7473763 TCCAAAGCCA
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.20, C:0.59, G:0.11, T:0.10
Consensus pattern (30 bp):
CCCACCACCAGCACCAGCTCCACCACCGAA
Found at i:7473764 original size:18 final size:18
Alignment explanation
Indices: 7473709--7473766 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
7473699 CACCACCGAG
7473709 TCCACCTCCAGCTCCTCC
1 TCCACCTCCAGCTCCTCC
* * *
7473727 GCCACCACCGAAC-CCTCC
1 TCCACCTCC-AGCTCCTCC
*
7473745 TCCACCTCCAGCTCCACC
1 TCCACCTCCAGCTCCTCC
7473763 TCCA
1 TCCA
7473767 AAGCCAGCAC
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
17 2 0.06
18 27 0.87
19 2 0.06
ACGTcount: A:0.17, C:0.60, G:0.07, T:0.16
Consensus pattern (18 bp):
TCCACCTCCAGCTCCTCC
Found at i:7473773 original size:18 final size:18
Alignment explanation
Indices: 7473752--7473798 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7473742 TCCTCCACCT
* *
7473752 CCAGCTCCACCTCCAAAG
1 CCAGCACCACCTCCAAAA
*
7473770 CCAGCACCTCCTCCAAAA
1 CCAGCACCACCTCCAAAA
*
7473788 CCAGAACCACC
1 CCAGCACCACC
7473799 CCCTAGTCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.32, C:0.51, G:0.09, T:0.09
Consensus pattern (18 bp):
CCAGCACCACCTCCAAAA
Found at i:7473873 original size:18 final size:18
Alignment explanation
Indices: 7473836--7473873 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7473826 TCCACCGCCT
*
7473836 CCTCCACCAAGTCCACCA
1 CCTCCACCAAGCCCACCA
*
7473854 CCTCCACCAAGCCCAGCA
1 CCTCCACCAAGCCCACCA
7473872 CC
1 CC
7473874 AGCACCAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.58, G:0.08, T:0.08
Consensus pattern (18 bp):
CCTCCACCAAGCCCACCA
Found at i:7473900 original size:30 final size:30
Alignment explanation
Indices: 7473852--7473940 Score: 88
Period size: 30 Copynumber: 3.0 Consensus size: 30
7473842 CCAAGTCCAC
* *
7473852 CACCTCCACCAAGCCCAGCACCAGCACCAG
1 CACCTCCACCAAACCCAGCACCACCACCAG
* * *
7473882 CACCTCCACCAAATCCAGCTCCACCACCTG
1 CACCTCCACCAAACCCAGCACCACCACCAG
* * * * *
7473912 CACCACCTCCTAACCCACCTCCACCACCA
1 CACCTCCACCAAACCCAGCACCACCACCA
7473941 AACCCTCCAC
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.28, C:0.56, G:0.07, T:0.09
Consensus pattern (30 bp):
CACCTCCACCAAACCCAGCACCACCACCAG
Found at i:7473944 original size:18 final size:18
Alignment explanation
Indices: 7473912--7473957 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
7473902 CCACCACCTG
* *
7473912 CACCACCTCCTAACCCAC
1 CACCACCACCAAACCCAC
* *
7473930 CTCCACCACCAAACCCTC
1 CACCACCACCAAACCCAC
7473948 CACCACCACC
1 CACCACCACC
7473958 TCCTCCTCCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.28, C:0.63, G:0.00, T:0.09
Consensus pattern (18 bp):
CACCACCACCAAACCCAC
Found at i:7478012 original size:23 final size:23
Alignment explanation
Indices: 7477982--7478038 Score: 114
Period size: 23 Copynumber: 2.5 Consensus size: 23
7477972 TAAGTATACG
7477982 AATCGAGCTTATTTTTACATATT
1 AATCGAGCTTATTTTTACATATT
7478005 AATCGAGCTTATTTTTACATATT
1 AATCGAGCTTATTTTTACATATT
7478028 AATCGAGCTTA
1 AATCGAGCTTA
7478039 ATTGAGCGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.44
Consensus pattern (23 bp):
AATCGAGCTTATTTTTACATATT
Found at i:7479875 original size:24 final size:24
Alignment explanation
Indices: 7479831--7479885 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 24
7479821 GAAAAATTTC
* *
7479831 AAAAAAAATTTTAAAAGATTTGAAA
1 AAAAAAAACTCTAAAAGATTT-AAA
*
7479856 AAAAAAAACTCTAAAA-ATTTATA
1 AAAAAAAACTCTAAAAGATTTAAA
7479879 AAAAAAA
1 AAAAAAA
7479886 TCTGAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 9 0.33
24 4 0.15
25 14 0.52
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (24 bp):
AAAAAAAACTCTAAAAGATTTAAA
Found at i:7479883 original size:21 final size:22
Alignment explanation
Indices: 7479820--7479904 Score: 66
Period size: 22 Copynumber: 3.8 Consensus size: 22
7479810 TCAGCATTAA
* *
7479820 TGAAAAATTT-CAAAAAAAATT
1 TGAAAAATTTATAAAAAAAATC
* *
7479841 TTAAAAGATTTGAAAAAAAAAAACTC
1 TGAAAA-ATTT--ATAAAAAAAA-TC
7479867 T-AAAAATTTATAAAAAAAATC
1 TGAAAAATTTATAAAAAAAATC
* *
7479888 TGAAATATTTTTAAAAA
1 TGAAAAATTTATAAAAA
7479905 TTATAAAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
21 8 0.15
22 26 0.50
24 4 0.08
25 12 0.23
26 2 0.04
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
TGAAAAATTTATAAAAAAAATC
Found at i:7479926 original size:27 final size:28
Alignment explanation
Indices: 7479881--7479941 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
7479871 AATTTATAAA
* *
7479881 AAAAATCTGAAATATTTTTAAAAATTAT
1 AAAAATATGAAATAGTTTTAAAAATTAT
**
7479909 AAAAATATGAAAT-GTTTTGGAAATTAT
1 AAAAATATGAAATAGTTTTAAAAATTAT
7479936 AAAAAT
1 AAAAAT
7479942 TAAAAAAACT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 17 0.59
28 12 0.41
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.36
Consensus pattern (28 bp):
AAAAATATGAAATAGTTTTAAAAATTAT
Found at i:7479971 original size:32 final size:33
Alignment explanation
Indices: 7479929--7479995 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 33
7479919 AATGTTTTGG
**
7479929 AAATTATAAAAATT-AAAAAAACTTAAAATTTT
1 AAATTATAAAAATTCAAAAAAACCAAAAATTTT
* * *
7479961 AAATTTTAAAATTTCAAAAAATCCAAAAATTTT
1 AAATTATAAAAATTCAAAAAAACCAAAAATTTT
7479994 AA
1 AA
7479996 TAAAAAATCG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (33 bp):
AAATTATAAAAATTCAAAAAAACCAAAAATTTT
Found at i:7480002 original size:21 final size:21
Alignment explanation
Indices: 7479976--7480040 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
7479966 TTAAAATTTC
7479976 AAAAAATCCAAAAATTTTAAT
1 AAAAAATCCAAAAATTTTAAT
* * *
7479997 AAAAAATCGAAAAA-ATTCA-
1 AAAAAATCCAAAAATTTTAAT
7480016 AAAAAA--CATAAAATTTTAAT
1 AAAAAATCCA-AAAATTTTAAT
7480036 AAAAA
1 AAAAA
7480041 TAAAATTTTC
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
17 1 0.03
18 4 0.11
19 9 0.26
20 8 0.23
21 13 0.37
ACGTcount: A:0.68, C:0.08, G:0.02, T:0.23
Consensus pattern (21 bp):
AAAAAATCCAAAAATTTTAAT
Found at i:7480043 original size:17 final size:17
Alignment explanation
Indices: 7479986--7480049 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 17
7479976 AAAAAATCCA
7479986 AAAATTTTAATAAAAAAT
1 AAAATTTTAAT-AAAAAT
* * *
7480004 CGAAAAAATTCAAAAAAACAT
1 ---AAAATTTTAATAAAA-AT
7480025 AAAATTTTAATAAAAAT
1 AAAATTTTAATAAAAAT
7480042 AAAATTTT
1 AAAATTTT
7480050 CTTAAAATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
17 10 0.28
18 12 0.33
20 4 0.11
21 10 0.28
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (17 bp):
AAAATTTTAATAAAAAT
Found at i:7480056 original size:17 final size:18
Alignment explanation
Indices: 7479986--7480049 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 18
7479976 AAAAAATCCA
*
7479986 AAAATTTTAATAAAAAAT
1 AAAATTTTAATAAAACAT
* * *
7480004 CGAAAAAATTCAAAAAAACAT
1 ---AAAATTTTAATAAAACAT
7480025 AAAATTTTAATAAAA-AT
1 AAAATTTTAATAAAACAT
7480042 AAAATTTT
1 AAAATTTT
7480050 CTTAAAATTC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
17 10 0.28
18 12 0.33
21 14 0.39
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (18 bp):
AAAATTTTAATAAAACAT
Found at i:7481256 original size:15 final size:16
Alignment explanation
Indices: 7481223--7481264 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
7481213 ATTATTATAA
*
7481223 TTTTAAGTTATATTAT
1 TTTTATGTTATATTAT
*
7481239 TTTTATGTTTTATT-T
1 TTTTATGTTATATTAT
*
7481254 TTTTATCTTAT
1 TTTTATGTTAT
7481265 TTGTAATGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.71
Consensus pattern (16 bp):
TTTTATGTTATATTAT
Found at i:7482428 original size:157 final size:155
Alignment explanation
Indices: 7482132--7482419 Score: 479
Period size: 160 Copynumber: 1.8 Consensus size: 155
7482122 AAAAAATTAA
7482132 TTTACATATTAAAATAAAATTAAACAATAAATTAAAATTGAAAGTATTTATGTTTATCTATTTTT
1 TTTACATATTAAAATAAAATTAAACAATAAATTAAAATTGAAAGTATTTATGTTTATCTATTTTT
* *
7482197 TATTTATTTTTATAAAAGAACAAGGTTTTTTAAGAAACTATTACTCTTAAAAAACAATAAATTAT
66 TATTTATTTTTATAAAAGAACAAGGGTTTTTAAGAAACTATCACTCTTAAAAAAC-ATAAATTA-
*
7482262 TTATGTTTATCTATTTTTATGTTTATG
129 TCATGTTTATCTATTTTTATGTTTATG
*
7482289 TTTACATATTAAAATAAAATTAAACAATAAATTAAAATTGAACGTATTTATGTTTTATCTATTTT
1 TTTACATATTAAAATAAAATTAAACAATAAATTAAAATTGAAAGTATTTATG-TTTATCTA--TT
7482354 TTTTATTTATTTTTATAAAAGAACAAGGGTTTTTAAGAAACTATCACTCTTAAAAAAC-TACAAT
63 TTTTATTTATTTTTATAAAAGAACAAGGGTTTTTAAGAAACTATCACTCTTAAAAAACATA-AAT
7482418 TA
127 TA
7482420 CACTTTTATT
Statistics
Matches: 124, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
157 51 0.41
158 10 0.08
159 5 0.04
160 58 0.47
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.44
Consensus pattern (155 bp):
TTTACATATTAAAATAAAATTAAACAATAAATTAAAATTGAAAGTATTTATGTTTATCTATTTTT
TATTTATTTTTATAAAAGAACAAGGGTTTTTAAGAAACTATCACTCTTAAAAAACATAAATTATC
ATGTTTATCTATTTTTATGTTTATG
Found at i:7483582 original size:23 final size:25
Alignment explanation
Indices: 7483556--7483607 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
7483546 TAAATAGATT
7483556 TTTTAAAATAATATA-AATT-AT-TA
1 TTTTAAAATAA-ATAGAATTAATATA
*
7483579 TTTTAAATTAAATAGAATTAATATA
1 TTTTAAAATAAATAGAATTAATATA
7483604 TTTT
1 TTTT
7483608 TATGAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 3 0.12
23 14 0.56
24 2 0.08
25 6 0.24
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
TTTTAAAATAAATAGAATTAATATA
Found at i:7484214 original size:18 final size:17
Alignment explanation
Indices: 7484191--7484228 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
7484181 AAATAAAATT
*
7484191 AATATATTTTTATGAAAA
1 AATATATATTTAT-AAAA
7484209 AATATATATTTATAAAA
1 AATATATATTTATAAAA
7484226 AAT
1 AAT
7484229 TACCTAAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
AATATATATTTATAAAA
Found at i:7485109 original size:20 final size:20
Alignment explanation
Indices: 7485080--7485122 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
7485070 GAATTAAATA
7485080 ATATAATTTTATT-AATTTTT
1 ATATAATTTT-TTAAATTTTT
*
7485100 ATATATTTTTTTAAATTTTT
1 ATATAATTTTTTAAATTTTT
7485120 ATA
1 ATA
7485123 AAATAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
ATATAATTTTTTAAATTTTT
Found at i:7485124 original size:10 final size:10
Alignment explanation
Indices: 7485086--7485124 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
7485076 AATAATATAA
*
7485086 TTTTATTAAT
1 TTTTATAAAT
*
7485096 TTTTATATAT
1 TTTTATAAAT
*
7485106 TTTTTTAAAT
1 TTTTATAAAT
7485116 TTTTATAAA
1 TTTTATAAA
7485125 ATAAAAATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTATAAAT
Found at i:7488102 original size:25 final size:24
Alignment explanation
Indices: 7488043--7488103 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
7488033 TATTCAACGG
*
7488043 TAAAAATTCTATCGATATTTTTAC
1 TAAAAATTCTATCAATATTTTTAC
7488067 TAAAAATTCTATCAATATTTTTAC
1 TAAAAATTCTATCAATATTTTTAC
7488091 TAAAAATATCTAT
1 TAAAAAT-TCTAT
7488104 TTAATAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 30 0.86
25 5 0.14
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (24 bp):
TAAAAATTCTATCAATATTTTTAC
Found at i:7490250 original size:19 final size:19
Alignment explanation
Indices: 7490226--7490262 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7490216 ATCAGATAAT
*
7490226 AAATTCAATGAGAAAAGAG
1 AAATTCAATAAGAAAAGAG
7490245 AAATTCAATAAGAAAAGA
1 AAATTCAATAAGAAAAGA
7490263 TGGTCAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.16, T:0.16
Consensus pattern (19 bp):
AAATTCAATAAGAAAAGAG
Found at i:7498344 original size:681 final size:683
Alignment explanation
Indices: 7497037--7498366 Score: 2301
Period size: 681 Copynumber: 1.9 Consensus size: 683
7497027 TTCAGTTGGG
*
7497037 GGAGATGGCTTGGAAGCAGCTTTTTCTGATTTCTTTTCAGCAGAAGCAGCAGGTGCTACACCCTC
1 GGAGATGGCTCGGAAGCAGCTTTTTCTGATTTCTTTTCAGCAGAAGCAGCAGGTGCTACACCCTC
*
7497102 AGCAGACTTTGAAATGACAGCAATCCTGTTACCTGGTTCCACGGTATCTCCTTCCTTGGCTACAT
66 AGCAGACTTTGAAATGACAGCAATCCTGTTACCTGGTTCCACGGTATCTCCTTCCTTGGCCACAT
7497167 ACTGCCAAGAATTATAACACTAAAGTTCAGGATCCAATCCACTTCCCTTGTTCCCAGAAATGAGA
131 ACTGCCAAGAATTATAACACTAAAGTTCAGGATCCAATCCACTTCCCTTGTTCCCAGAAATGAGA
*
7497232 AGGTAGAAGTCTAGGAATGACCAACAAGCTAGACATGTGCGTGCGTGAGTGCATGTGAGACCCAA
196 AGGTAGAAGTCTAGGAATGACCAACAAGCTAGACATGTGCATGC--GAGTGCATGTGAGACCCAA
* *
7497297 AGATCCAGTTTTGTTGATATATTACCTCTTGTAGCACACCATCTTGGGGACTAGTAACATCAATT
259 AGATCCAGATTTGTTGACATATTACCTCTTGTAGCACACCATCTTGGGGACTAGTAACATCAATT
* *
7497362 GTTACCTGATGAAAATAAACACTGAAGGTATTAGGGGTATAAACAAATATCACTTCTCAATAAAG
324 GTTACCTGATGAAAATAAACACTGAAGGTATTAGGAGTATAAACAAATATCAATTCTCAATAAAG
*
7497427 AAAAGGTCAAGAATGGTACCTTATCAGTTTCTATTTGAGCAATGGGTTCGTCAGCTGCTACTCTA
389 AAAAGGTCAAGAATAGTACCTTATCAGTTTCTATTTGAGCAATGGGTTCGTCAGCTGCTACTCTA
*
7497492 TCACCAGGTTCTGCTCCCAAAAATTCAGATACATCCACAATAAAGCACTTACAACCATGAAAATG
454 TCACCAGGTTCTGCTCCCAAAAATTCAGATACATCCACAATAAAGCACTTACAACCATGAAAACG
*
7497557 AATATGTCCAGAGAATTGATAGAAATCACATCAGTGGAAAACATACTTTTCAAGAATGTAGCCAA
519 AATATGTCCAGAGAATGGATAGAAATCACATCAGTGGAAAACATACTTTTCAAGAATGTAGCCAA
7497622 AGTGCCATCAGATATTGATTCTCCCATGAAAGGGACAACAGCATCAACCAGATCCCCTTCATCAT
584 AGTGCCATCAGATATTGATTCTCCCATGAAAGGGACAACAGCATCAACCAGATCCCCTTCATCAT
7497687 ATGATGGGGTTTTAGGCTTCTCCACAGTTTCAGCT
649 ATGATGGGGTTTTAGGCTTCTCCACAGTTTCAGCT
** *
7497722 GGAGATGGCTCGGAAGCAGCTTTTTCTGATTTCTTTTCAGCAGGGGCAGCTGGTGCTACACCCTC
1 GGAGATGGCTCGGAAGCAGCTTTTTCTGATTTCTTTTCAGCAGAAGCAGCAGGTGCTACACCCTC
*
7497787 AGCAGACTTTGAAATGACAGCAATCCTGTTACCTGGTTCCACTGTATCTCCTTCCTTGGCCACAT
66 AGCAGACTTTGAAATGACAGCAATCCTGTTACCTGGTTCCACGGTATCTCCTTCCTTGGCCACAT
* *
7497852 ACTGGCAAGAATTATAACACTAAAGTTCAGGATCCAATCCACTTCTCTTGTTCCCAGAAATGCA-
131 ACTGCCAAGAATTATAACACTAAAGTTCAGGATCCAATCCACTTCCCTTGTTCCCAGAAATG-AG
* *
7497916 AAGGTAGGAGTCTAGGAATGACCAACAAGCTAGACATGTGCATGC-A-TGCATGTGTGACCCAAA
195 AAGGTAGAAGTCTAGGAATGACCAACAAGCTAGACATGTGCATGCGAGTGCATGTGAGACCCAAA
*
7497979 GATTCAGATTTGTTGACATATTACCTCTTGTAGCACACCATCTTGGGGACT-GCTAACATCAATT
260 GATCCAGATTTGTTGACATATTACCTCTTGTAGCACACCATCTTGGGGACTAG-TAACATCAATT
** * *
7498043 GTTACCTGATGAAAATAAATGCTGAGGGTATTAGGAGTATAAACAAATATCAATTCTCAATGAAG
324 GTTACCTGATGAAAATAAACACTGAAGGTATTAGGAGTATAAACAAATATCAATTCTCAATAAAG
* *
7498108 AAAAGGTCAGGAATAGTACCTTATCAGTTTCTATTTGAGCAATTGGTTCGTCAGCTGCTACTCTA
389 AAAAGGTCAAGAATAGTACCTTATCAGTTTCTATTTGAGCAATGGGTTCGTCAGCTGCTACTCTA
* *
7498173 TCACCAGGTTCTGCTCTCAAAAATTCAGATACATCCACAATCAAGCACTTACAACCATGAAAACG
454 TCACCAGGTTCTGCTCCCAAAAATTCAGATACATCCACAATAAAGCACTTACAACCATGAAAACG
* * *
7498238 AATATGTCTAGAGAATGGAT-GAAAATCACATTAGTGGAAAACATACTTTTCAAGAATGTTGCCA
519 AATATGTCCAGAGAATGGATAG-AAATCACATCAGTGGAAAACATACTTTTCAAGAATGTAGCCA
*
7498302 AAGTGCCATCAGATATTGATTCTCCCATGAAAGGGACAACAGCATCAACCAGATCTCCTTCATCA
583 AAGTGCCATCAGATATTGATTCTCCCATGAAAGGGACAACAGCATCAACCAGATCCCCTTCATCA
7498367 CAATTAAATT
Statistics
Matches: 611, Mismatches: 31, Indels: 10
0.94 0.05 0.02
Matches are distributed among these distances:
680 2 0.00
681 380 0.62
682 1 0.00
685 227 0.37
686 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (683 bp):
GGAGATGGCTCGGAAGCAGCTTTTTCTGATTTCTTTTCAGCAGAAGCAGCAGGTGCTACACCCTC
AGCAGACTTTGAAATGACAGCAATCCTGTTACCTGGTTCCACGGTATCTCCTTCCTTGGCCACAT
ACTGCCAAGAATTATAACACTAAAGTTCAGGATCCAATCCACTTCCCTTGTTCCCAGAAATGAGA
AGGTAGAAGTCTAGGAATGACCAACAAGCTAGACATGTGCATGCGAGTGCATGTGAGACCCAAAG
ATCCAGATTTGTTGACATATTACCTCTTGTAGCACACCATCTTGGGGACTAGTAACATCAATTGT
TACCTGATGAAAATAAACACTGAAGGTATTAGGAGTATAAACAAATATCAATTCTCAATAAAGAA
AAGGTCAAGAATAGTACCTTATCAGTTTCTATTTGAGCAATGGGTTCGTCAGCTGCTACTCTATC
ACCAGGTTCTGCTCCCAAAAATTCAGATACATCCACAATAAAGCACTTACAACCATGAAAACGAA
TATGTCCAGAGAATGGATAGAAATCACATCAGTGGAAAACATACTTTTCAAGAATGTAGCCAAAG
TGCCATCAGATATTGATTCTCCCATGAAAGGGACAACAGCATCAACCAGATCCCCTTCATCATAT
GATGGGGTTTTAGGCTTCTCCACAGTTTCAGCT
Found at i:7499741 original size:5 final size:5
Alignment explanation
Indices: 7499731--7499759 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
7499721 TGTTCTTTCA
7499731 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
7499760 TATGATCTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:7500947 original size:8 final size:8
Alignment explanation
Indices: 7500914--7500946 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
7500904 ATGAATAATG
7500914 TATAAAAT
1 TATAAAAT
7500922 TATAAAAT
1 TATAAAAT
7500930 TATAAAAT
1 TATAAAAT
*
7500938 TTTAAAAT
1 TATAAAAT
7500946 T
1 T
7500947 TGAATCAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
TATAAAAT
Found at i:7501071 original size:24 final size:24
Alignment explanation
Indices: 7501011--7501071 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
7501001 TGATTTATTA
* * *
7501011 ATTTTTAAAT-TTATTTTGATTTG
1 ATTTTTAATTATTATTTTAATATG
* *
7501034 TTTTTTTATATATTATTTTAATATG
1 ATTTTTAAT-TATTATTTTAATATG
7501059 ATTTTTAATTATT
1 ATTTTTAATTATT
7501072 TAAATAGATT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
23 6 0.21
24 5 0.17
25 18 0.62
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (24 bp):
ATTTTTAATTATTATTTTAATATG
Found at i:7501125 original size:9 final size:10
Alignment explanation
Indices: 7501106--7501143 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
7501096 TTATTTTTAT
7501106 TTTATAAAAA
1 TTTATAAAAA
7501116 TTTA-AAAAA
1 TTTATAAAAA
*
7501125 TATATAAAAA
1 TTTATAAAAA
*
7501135 TTAATAAAA
1 TTTATAAAA
7501144 TTATATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (10 bp):
TTTATAAAAA
Found at i:7501134 original size:20 final size:20
Alignment explanation
Indices: 7501108--7501151 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
7501098 ATTTTTATTT
7501108 TATAAAAATTTAA-AAAA-TA
1 TATAAAAA-TTAATAAAATTA
7501127 TATAAAAATTAATAAAATTA
1 TATAAAAATTAATAAAATTA
7501147 TATAA
1 TATAA
7501152 TTTAGTTCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 4 0.17
19 12 0.52
20 7 0.30
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
TATAAAAATTAATAAAATTA
Found at i:7501264 original size:23 final size:24
Alignment explanation
Indices: 7501238--7501302 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 24
7501228 TTAATATCCG
*
7501238 AAATTATTTCAAATCAAAT-AAAA
1 AAATGATTTCAAATCAAATCAAAA
*
7501261 AAATCGA-TTAAAATCAAATCAAAA
1 AAAT-GATTTCAAATCAAATCAAAA
*
7501285 ACTATGATTTCAAATCAA
1 A-AATGATTTCAAATCAA
7501303 TTTTTTTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
23 15 0.44
24 8 0.24
25 11 0.32
ACGTcount: A:0.57, C:0.12, G:0.03, T:0.28
Consensus pattern (24 bp):
AAATGATTTCAAATCAAATCAAAA
Found at i:7501536 original size:17 final size:18
Alignment explanation
Indices: 7501514--7501547 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7501504 ATAAATATAC
7501514 AAAAAA-TTAATAATTTT
1 AAAAAACTTAATAATTTT
*
7501531 AAAAAACTTAATTATTT
1 AAAAAACTTAATAATTT
7501548 ATTAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAAAACTTAATAATTTT
Found at i:7501881 original size:11 final size:10
Alignment explanation
Indices: 7501856--7501880 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7501846 GCATCCTATG
7501856 AAAAAGAAAA
1 AAAAAGAAAA
7501866 AAAAAGAAAA
1 AAAAAGAAAA
7501876 AAAAA
1 AAAAA
7501881 ACTAAAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:7502168 original size:13 final size:13
Alignment explanation
Indices: 7502152--7502196 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 13
7502142 TTAAATTATA
7502152 TTATTTTTATATT
1 TTATTTTTATATT
*
7502165 TTATTTTTATTATA
1 TTATTTTTA-TATT
7502179 TTATTATATTATATT
1 TTATT-T-TTATATT
7502194 TTA
1 TTA
7502197 AATTATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 9 0.33
14 8 0.30
15 7 0.26
16 3 0.11
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTTTATATT
Found at i:7502836 original size:22 final size:22
Alignment explanation
Indices: 7502790--7502837 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
7502780 TATATATTAT
*
7502790 TTTAATATAAAATTTTAATATA
1 TTTAATATAAAATTTTAATAAA
7502812 TTTAA-AT-AAATTTTGATATAAA
1 TTTAATATAAAATTTT-A-ATAAA
7502834 TTTA
1 TTTA
7502838 TTATTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 7 0.30
21 3 0.13
22 13 0.57
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
TTTAATATAAAATTTTAATAAA
Found at i:7503539 original size:33 final size:33
Alignment explanation
Indices: 7503502--7503566 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
7503492 TGCACCAGCT
* *
7503502 CCACCGCCGAACCCACCACCAGCGCCAGCTCCG
1 CCACCACCGAACCCACCACCACCGCCAGCTCCG
* * *
7503535 CCACCACCGAACCCGCCTCCACCTCCAGCTCC
1 CCACCACCGAACCCACCACCACCGCCAGCTCC
7503567 ACCTCCAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.20, C:0.60, G:0.14, T:0.06
Consensus pattern (33 bp):
CCACCACCGAACCCACCACCACCGCCAGCTCCG
Found at i:7503580 original size:18 final size:18
Alignment explanation
Indices: 7503559--7503605 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
7503549 GCCTCCACCT
* *
7503559 CCAGCTCCACCTCCAAAG
1 CCAGCACCACCTCCAAAA
*
7503577 CCAGCACCTCCTCCAAAA
1 CCAGCACCACCTCCAAAA
7503595 CCAGCACCACC
1 CCAGCACCACC
7503606 CCCTAGTCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.30, C:0.53, G:0.09, T:0.09
Consensus pattern (18 bp):
CCAGCACCACCTCCAAAA
Found at i:7503686 original size:18 final size:18
Alignment explanation
Indices: 7503649--7503686 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7503639 TCCACCGCCT
*
7503649 CCTCCACCAAGTCCACCA
1 CCTCCACCAAGCCCACCA
*
7503667 CCTCCACCAAGCCCAGCA
1 CCTCCACCAAGCCCACCA
7503685 CC
1 CC
7503687 AGCACCAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.58, G:0.08, T:0.08
Consensus pattern (18 bp):
CCTCCACCAAGCCCACCA
Found at i:7503757 original size:18 final size:18
Alignment explanation
Indices: 7503725--7503770 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
7503715 CCGCCACCTG
* *
7503725 CACCACCTCCTAACCCAC
1 CACCACCACCAAACCCAC
* *
7503743 CTCCACCACCAAACCCTC
1 CACCACCACCAAACCCAC
7503761 CACCACCACC
1 CACCACCACC
7503771 TCCTCCTCCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.28, C:0.63, G:0.00, T:0.09
Consensus pattern (18 bp):
CACCACCACCAAACCCAC
Found at i:7504591 original size:28 final size:30
Alignment explanation
Indices: 7504542--7504600 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 30
7504532 ATTTATTAAT
*
7504542 TTTAATATATTTTAATATTAT-AT-TTATA
1 TTTAATATATTTCAATATTATAATATTATA
*
7504570 TTTAATATGCTTTCAATA-TATAATATTATA
1 TTTAATAT-ATTTCAATATTATAATATTATA
7504600 T
1 T
7504601 ACTATCAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 11 0.42
29 9 0.35
30 6 0.23
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (30 bp):
TTTAATATATTTCAATATTATAATATTATA
Found at i:7509681 original size:22 final size:23
Alignment explanation
Indices: 7509648--7509710 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
7509638 CATTAATAAG
*
7509648 AAATTTCA-AAAAAAAAATTTTAA
1 AAATTT-AGAAAAAAAAATTCTAA
* *
7509671 AGATTT-GAAAAAAAAACTCTAA
1 AAATTTAGAAAAAAAAATTCTAA
*
7509693 AAATTTATAAAAAAAAAT
1 AAATTTAGAAAAAAAAAT
7509711 CTGAAATATT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (23 bp):
AAATTTAGAAAAAAAAATTCTAA
Found at i:7509727 original size:22 final size:23
Alignment explanation
Indices: 7509648--7509728 Score: 69
Period size: 23 Copynumber: 3.6 Consensus size: 23
7509638 CATTAATAAG
* *
7509648 AAATTTCA-AAAAAAAAATTTTAA
1 AAATTT-ATAAAAAAAAACTCTAA
* *
7509671 AGATTT-GAAAAAAAAACTCTAA
1 AAATTTATAAAAAAAAACTCTAA
7509693 AAATTTATAAAAAAAAA-TCTGAA
1 AAATTTATAAAAAAAAACTCT-AA
* *
7509716 ATATTTTTAAAAA
1 AAATTTATAAAAA
7509729 TTATAAAAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
22 21 0.44
23 27 0.56
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.30
Consensus pattern (23 bp):
AAATTTATAAAAAAAAACTCTAA
Found at i:7509821 original size:8 final size:7
Alignment explanation
Indices: 7509791--7509822 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
7509781 TTAAAACTTA
7509791 AAATTTC
1 AAATTTC
7509798 AAATTTC
1 AAATTTC
7509805 AAATTTC
1 AAATTTC
7509812 AAATTTTC
1 AAA-TTTC
7509820 AAA
1 AAA
7509823 ATTTAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATTTC
Found at i:7509831 original size:8 final size:8
Alignment explanation
Indices: 7509790--7509830 Score: 52
Period size: 7 Copynumber: 5.5 Consensus size: 8
7509780 CTTAAAACTT
7509790 AAAATTTC
1 AAAATTTC
7509798 -AAATTTC
1 AAAATTTC
7509805 -AAATTTC
1 AAAATTTC
*
7509812 AAATTTTC
1 AAAATTTC
7509820 AAAATTT-
1 AAAATTTC
7509827 AAAA
1 AAAA
7509831 AACTCCCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
7 18 0.60
8 12 0.40
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (8 bp):
AAAATTTC
Found at i:7509852 original size:22 final size:21
Alignment explanation
Indices: 7509826--7509894 Score: 61
Period size: 22 Copynumber: 3.3 Consensus size: 21
7509816 TTTCAAAATT
*
7509826 TAAAAAACTCCCAAAATTTTAA
1 TAAAAAA-TCCAAAAATTTTAA
**
7509848 TAAAAAATCCAAAAAATTCAAA
1 TAAAAAATCC-AAAAATTTTAA
* *
7509870 AAAAAAAT--GAAAATTTTAA
1 TAAAAAATCCAAAAATTTTAA
7509889 TAAAAA
1 TAAAAA
7509895 TAAAATTTTC
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
19 13 0.34
21 3 0.08
22 22 0.58
ACGTcount: A:0.65, C:0.10, G:0.01, T:0.23
Consensus pattern (21 bp):
TAAAAAATCCAAAAATTTTAA
Found at i:7510980 original size:37 final size:34
Alignment explanation
Indices: 7510938--7511029 Score: 91
Period size: 37 Copynumber: 2.6 Consensus size: 34
7510928 ATTAATGAAT
7510938 TTATATCATATAAAATATTAAAATGTATATATTTATA
1 TTATAT-ATATAAAATATTAAAAT-TATA-ATTTATA
*
7510975 TTATATTTTATATAAAA-ATTACATATTATAATTTATA
1 TTATA---TATATAAAATATTA-AAATTATAATTTATA
7511012 TTA-ATATA-AAAATATTAA
1 TTATATATATAAAATATTAA
7511030 TTTTAAGTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 15
0.75 0.02 0.23
Matches are distributed among these distances:
32 5 0.10
33 8 0.16
36 1 0.02
37 15 0.31
38 8 0.16
39 11 0.22
40 1 0.02
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (34 bp):
TTATATATATAAAATATTAAAATTATAATTTATA
Found at i:7511001 original size:31 final size:32
Alignment explanation
Indices: 7510951--7511024 Score: 82
Period size: 31 Copynumber: 2.3 Consensus size: 32
7510941 TATCATATAA
* *
7510951 AATATTAAAATGTATATATT-T-ATATTATATTT
1 AATATAAAAATGTACATATTATAAT-TTATA-TT
*
7510983 TATATAAAAAT-TACATATTATAATTTATATT
1 AATATAAAAATGTACATATTATAATTTATATT
7511014 AATATAAAAAT
1 AATATAAAAAT
7511025 ATTAATTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
31 19 0.53
32 15 0.42
33 2 0.06
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (32 bp):
AATATAAAAATGTACATATTATAATTTATATT
Found at i:7511091 original size:24 final size:23
Alignment explanation
Indices: 7511027--7511095 Score: 63
Period size: 24 Copynumber: 3.0 Consensus size: 23
7511017 ATAAAAATAT
*
7511027 TAATTTTAAGTT-TTTTATTTTA
1 TAATTTTAAGTTATATTATTTTA
*
7511049 TTAAATTT-A-TATATAATTATTATTA
1 -TAATTTTAAGT-TAT-ATTATT-TTA
7511074 TAATTTTAAGTTATATTATTTT
1 TAATTTTAAGTTATATTATTTT
7511096 TATGTTTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
21 1 0.03
22 2 0.05
23 9 0.24
24 17 0.46
25 7 0.19
26 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (23 bp):
TAATTTTAAGTTATATTATTTTA
Found at i:7511110 original size:15 final size:16
Alignment explanation
Indices: 7511077--7511118 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
7511067 ATTATTATAA
*
7511077 TTTTAAGTTATATTAT
1 TTTTATGTTATATTAT
*
7511093 TTTTATGTTTTATT-T
1 TTTTATGTTATATTAT
*
7511108 TTTTATCTTAT
1 TTTTATGTTAT
7511119 TTGTAATGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.71
Consensus pattern (16 bp):
TTTTATGTTATATTAT
Found at i:7512023 original size:14 final size:13
Alignment explanation
Indices: 7511999--7512030 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7511989 TAATTTACAT
7511999 ATTAAAAT-A-AA
1 ATTAAAATAATAA
7512010 ATTAAAATAATAA
1 ATTAAAATAATAA
7512023 ATTAAAAT
1 ATTAAAAT
7512031 TGAAAGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 1 0.05
13 10 0.53
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATTAAAATAATAA
Found at i:7513889 original size:23 final size:25
Alignment explanation
Indices: 7513849--7513900 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
7513839 TAGATAGATT
7513849 TTTTAAAATAATATAAATT-AT-TA
1 TTTTAAAATAATATAAATTAATATA
*
7513872 TTTTAAATTAA-ATAAAATTAATATA
1 TTTTAAAATAATAT-AAATTAATATA
7513897 TTTT
1 TTTT
7513901 TATGAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 2 0.08
23 15 0.60
24 2 0.08
25 6 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
TTTTAAAATAATATAAATTAATATA
Found at i:7513914 original size:18 final size:17
Alignment explanation
Indices: 7513891--7513928 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
7513881 AAATAAAATT
*
7513891 AATATATTTTTATGAAAA
1 AATATATATTTAT-AAAA
7513909 AATATATATTTATAAAA
1 AATATATATTTATAAAA
7513926 AAT
1 AAT
7513929 TACCTAAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
AATATATATTTATAAAA
Found at i:7517684 original size:13 final size:13
Alignment explanation
Indices: 7517666--7517692 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7517656 CAATAATATA
7517666 TAAAAAAAATTAT
1 TAAAAAAAATTAT
7517679 TAAAAAAAATTAT
1 TAAAAAAAATTAT
7517692 T
1 T
7517693 TATAATTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAAAAAAATTAT
Found at i:7525032 original size:115 final size:115
Alignment explanation
Indices: 7524894--7525123 Score: 415
Period size: 115 Copynumber: 2.0 Consensus size: 115
7524884 AAAGAAAAAA
* *
7524894 ACAAAAACCGACCAAAAGAAAGAGACATGGCAAGAGCGCTTAAATCATTAGGTCAATCGTCGGCC
1 ACAAAAACCGACCAAAAGAAAGAGACATGGCAAGAGCGCTGAAATCATTAGGTCAATCATCGGCC
7524959 AACCGGTTATGCATGAGATGCACGCTAAGTCTAGCCTTATACACCACATT
66 AACCGGTTATGCATGAGATGCACGCTAAGTCTAGCCTTATACACCACATT
* * *
7525009 ACAAAAACCGACCGAAAGAAAGAGACATGGCAAGAGCGCTGAAATCTTTAGGTCAATTATCGGCC
1 ACAAAAACCGACCAAAAGAAAGAGACATGGCAAGAGCGCTGAAATCATTAGGTCAATCATCGGCC
7525074 AACCGGTTATGCATGAGATGCACGCTAAGTCTAGCCTTATACACCACATT
66 AACCGGTTATGCATGAGATGCACGCTAAGTCTAGCCTTATACACCACATT
7525124 CTCCACGGAT
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
115 110 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (115 bp):
ACAAAAACCGACCAAAAGAAAGAGACATGGCAAGAGCGCTGAAATCATTAGGTCAATCATCGGCC
AACCGGTTATGCATGAGATGCACGCTAAGTCTAGCCTTATACACCACATT
Found at i:7525580 original size:11 final size:11
Alignment explanation
Indices: 7525564--7525615 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
7525554 TGTATCACTT
7525564 TTTTATATTTA
1 TTTTATATTTA
7525575 TTTTATA-TTA
1 TTTTATATTTA
*
7525585 TTTTTATATCATA
1 -TTTTATAT-TTA
7525598 TTATTATATTATA
1 TT-TTATATT-TA
7525611 TTTTA
1 TTTTA
7525616 AATTATTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
10 3 0.09
11 14 0.41
12 5 0.15
13 12 0.35
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTATATTTA
Found at i:7525625 original size:24 final size:24
Alignment explanation
Indices: 7525573--7525618 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
7525563 TTTTTATATT
*
7525573 TATT-TTATATTATTTTTATATCA
1 TATTATTATATTATTTTTAAATCA
7525596 TATTATTATATTATATTTTAAAT
1 TATTATTATATTAT-TTTTAAAT
7525619 TATTTATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 9 0.45
25 7 0.35
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATTATATTATTTTTAAATCA
Found at i:7526443 original size:25 final size:24
Alignment explanation
Indices: 7526399--7526451 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
7526389 ATATCATTAA
7526399 AATTTTAATTTTTACTATTTTTTGT
1 AATTTTAATTTTTACTATTTTTT-T
7526424 AATTTT-ATTTTGTA-TCATTTTTTT
1 AATTTTAATTTT-TACT-ATTTTTTT
7526448 AATT
1 AATT
7526452 GTGTCATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (24 bp):
AATTTTAATTTTTACTATTTTTTT
Found at i:7528297 original size:24 final size:24
Alignment explanation
Indices: 7528256--7528303 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7528246 CATAAAAATA
**
7528256 TAAAATATATATTTTTATT-TTAT
1 TAAAATATATATAATTATTATTAT
7528279 TAAAATTATATATAATTATTATTAT
1 TAAAA-TATATATAATTATTATTAT
7528304 AATTTTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.24
24 12 0.57
25 4 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
TAAAATATATATAATTATTATTAT
Found at i:7529203 original size:12 final size:13
Alignment explanation
Indices: 7529171--7529208 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
7529161 ATTTATGAAT
7529171 TTTTTAA-AAAAA
1 TTTTTAATAAAAA
7529183 TTATTTAATAAAAA
1 TT-TTTAATAAAAA
7529197 -TTTTAATAAAAA
1 TTTTTAATAAAAA
7529209 ATTAAAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 13 0.54
13 6 0.25
14 5 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
TTTTTAATAAAAA
Found at i:7529414 original size:13 final size:13
Alignment explanation
Indices: 7529396--7529430 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
7529386 TAATAAAATT
*
7529396 TTTTGAATTTTGA
1 TTTTGAATTTTAA
7529409 TTTTGAATTTTAA
1 TTTTGAATTTTAA
*
7529422 TTTTTAATT
1 TTTTGAATT
7529431 AATTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (13 bp):
TTTTGAATTTTAA
Found at i:7530501 original size:21 final size:21
Alignment explanation
Indices: 7530458--7530501 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7530448 TAATAATAAA
* *
7530458 AATAAAATTAATTATTATTAT
1 AATAAAATTAATAATTATGAT
7530479 AATAAAATTAA-AATTAATGAT
1 AATAAAATTAATAATT-ATGAT
7530500 AA
1 AA
7530502 AATATATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
AATAAAATTAATAATTATGAT
Found at i:7531094 original size:19 final size:19
Alignment explanation
Indices: 7531072--7531108 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7531062 AATATATATT
7531072 TTATTATTAAT-TTTAATTA
1 TTATTA-TAATATTTAATTA
7531091 TTATTATAATATTTAATT
1 TTATTATAATATTTAATT
7531109 TTGTCGTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATTATAATATTTAATTA
Found at i:7531727 original size:18 final size:18
Alignment explanation
Indices: 7531701--7531746 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
7531691 TATAAAAATA
7531701 TTTACAATTTATATCATAT
1 TTTA-AATTTATATCATAT
* *
7531720 TTTAAATTTTTTATCGTAT
1 TTTAAA-TTTATATCATAT
7531739 TTTAAATT
1 TTTAAATT
7531747 ATCAAATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.17
19 20 0.83
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.59
Consensus pattern (18 bp):
TTTAAATTTATATCATAT
Found at i:7532571 original size:3 final size:3
Alignment explanation
Indices: 7532565--7532589 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7532555 TCACCATCAT
7532565 CAC CAC CAC CAC CAC CAC CAC CAC C
1 CAC CAC CAC CAC CAC CAC CAC CAC C
7532590 GCCGCCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:7534937 original size:26 final size:26
Alignment explanation
Indices: 7534907--7534957 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
7534897 AAAATAAAAT
*
7534907 TTTTTAATAAATTATTTAAATTGAATA
1 TTTTGAAT-AATTATTTAAATTGAATA
*
7534934 TTTTGGATAATTATTTAAATTGAA
1 TTTTGAATAATTATTTAAATTGAA
7534958 ATCAAAATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (26 bp):
TTTTGAATAATTATTTAAATTGAATA
Found at i:7536760 original size:26 final size:27
Alignment explanation
Indices: 7536726--7536778 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
7536716 TTAAAATTTA
* *
7536726 TTTTCAATCACAGTTA-CATAATTTTT
1 TTTTCAATCACAATTATAATAATTTTT
7536752 TTTTCAATCACAATTATAATAATTTTT
1 TTTTCAATCACAATTATAATAATTTTT
7536779 ATTACTGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.34, C:0.13, G:0.02, T:0.51
Consensus pattern (27 bp):
TTTTCAATCACAATTATAATAATTTTT
Found at i:7536989 original size:19 final size:18
Alignment explanation
Indices: 7536967--7537032 Score: 55
Period size: 19 Copynumber: 3.6 Consensus size: 18
7536957 CTATATTACG
7536967 TTATATTTTTAATATTTTA
1 TTATATTTTTAATA-TTTA
*
7536986 TTAT-TTTATACATATTT-
1 TTATATTTTTA-ATATTTA
*
7537003 TTAAATATTTTAATAATTTA
1 TTATAT-TTTTAAT-ATTTA
*
7537023 TAATATTTTT
1 TTATATTTTT
7537033 TCACAATAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
17 3 0.08
18 11 0.30
19 19 0.51
20 4 0.11
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATTTTTAATATTTA
Found at i:7537012 original size:10 final size:9
Alignment explanation
Indices: 7536969--7537032 Score: 60
Period size: 9 Copynumber: 6.9 Consensus size: 9
7536959 ATATTACGTT
7536969 ATATTTTTA
1 ATATTTTTA
7536978 ATA-TTTTA
1 ATATTTTTA
*
7536986 TTATTTTATA
1 ATATTTT-TA
7536996 CATATTTTTA
1 -ATATTTTTA
7537006 A-ATATTTTA
1 ATAT-TTTTA
*
7537015 ATAATTTATA
1 AT-ATTTTTA
7537025 ATATTTTT
1 ATATTTTT
7537033 TCACAATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
8 9 0.20
9 18 0.40
10 10 0.22
11 8 0.18
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (9 bp):
ATATTTTTA
Found at i:7537033 original size:29 final size:28
Alignment explanation
Indices: 7536969--7537032 Score: 94
Period size: 29 Copynumber: 2.3 Consensus size: 28
7536959 ATATTACGTT
* *
7536969 ATATTTTTAATATTTTATTATTTTATAC
1 ATATTTTTAATATTTTAATAATTTATAC
7536997 ATATTTTTAAATATTTTAATAATTTATA-
1 ATATTTTT-AATATTTTAATAATTTATAC
7537025 ATATTTTT
1 ATATTTTT
7537033 TCACAATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 16 0.48
29 17 0.52
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (28 bp):
ATATTTTTAATATTTTAATAATTTATAC
Done.