Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 38 of 125
Found at i:7537584 original size:11 final size:11
Alignment explanation
Indices: 7537568--7537597 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7537558 TTTTAAATCG
*
7537568 TATTATTTTTA
1 TATTATATTTA
7537579 TATTATATTTA
1 TATTATATTTA
7537590 TATTATAT
1 TATTATAT
7537598 CATCATATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TATTATATTTA
Found at i:7538498 original size:17 final size:18
Alignment explanation
Indices: 7538465--7538500 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
7538455 TTTTATTAAA
7538465 AATTTTCATTATATTTTT
1 AATTTTCATTATATTTTT
7538483 AATTTT-ATTA-ATTTTT
1 AATTTTCATTATATTTTT
7538499 AA
1 AA
7538501 ATAAAACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 4 0.22
18 6 0.33
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (18 bp):
AATTTTCATTATATTTTT
Found at i:7538823 original size:15 final size:15
Alignment explanation
Indices: 7538803--7538833 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7538793 TATGTAAATT
*
7538803 TAAAAATTTTATAAA
1 TAAAAATTTAATAAA
7538818 TAAAAATTTAATAAA
1 TAAAAATTTAATAAA
7538833 T
1 T
7538834 TCGTAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TAAAAATTTAATAAA
Found at i:7544254 original size:14 final size:15
Alignment explanation
Indices: 7544224--7544264 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
7544214 ATTTTAATTT
*
7544224 TAATTTTATTGAATA
1 TAATTTTATTAAATA
7544239 TAATTTT-TTAAATA
1 TAATTTTATTAAATA
*
7544253 TAATTATATTAA
1 TAATTTTATTAA
7544265 TTAATTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TAATTTTATTAAATA
Found at i:7547906 original size:1 final size:1
Alignment explanation
Indices: 7547902--7547928 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
7547892 CAATTTTTGC
7547902 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
7547929 ACATTTTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:7550580 original size:31 final size:30
Alignment explanation
Indices: 7550531--7550605 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 30
7550521 AAGATTAAAA
* *
7550531 AATATATTATAT-ATTTTTATAT-CAATAT
1 AATATAATATATAATTTTTATATAAAATAT
7550559 AAATTATAATATATAATTTTTATATAAAATAT
1 -AA-TATAATATATAATTTTTATATAAAATAT
7550591 AATATAAATATATAA
1 AATAT-AATATATAA
7550606 ATTATCTATA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
29 2 0.05
30 12 0.30
31 21 0.52
32 5 0.12
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (30 bp):
AATATAATATATAATTTTTATATAAAATAT
Found at i:7550602 original size:20 final size:20
Alignment explanation
Indices: 7550549--7550606 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 20
7550539 ATATATTTTT
*
7550549 ATATCAATATAAAT-TATAAT
1 ATAT-AATATAAATATATAAA
**
7550569 ATATAAT-T-TTTATATAAA
1 ATATAATATAAATATATAAA
7550587 ATATAATATAAATATATAAA
1 ATATAATATAAATATATAAA
7550607 TTATCTATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
17 1 0.03
18 13 0.43
19 4 0.13
20 12 0.40
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATAATATAAATATATAAA
Found at i:7552890 original size:13 final size:13
Alignment explanation
Indices: 7552872--7552897 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7552862 TGAGTAAATG
7552872 GGCATAACAAGTT
1 GGCATAACAAGTT
7552885 GGCATAACAAGTT
1 GGCATAACAAGTT
7552898 AGATAGTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
GGCATAACAAGTT
Found at i:7567008 original size:17 final size:18
Alignment explanation
Indices: 7566921--7567021 Score: 104
Period size: 17 Copynumber: 5.7 Consensus size: 18
7566911 ACTATGCTTG
*
7566921 AAAAATG-AAAAA-AGGA
1 AAAAATGAAAAAATAGAA
7566937 AAAAATGAAAAAAT-GAA
1 AAAAATGAAAAAATAGAA
*
7566954 AAAAATGATAAAAT-G-A
1 AAAAATGAAAAAATAGAA
7566970 AAAAATGAAAAAAATAGAA
1 AAAAATG-AAAAAATAGAA
*
7566989 AAAAATAGAAAAAAATAAAA
1 AAAAAT-G-AAAAAATAGAA
7567009 AAAAAGTGAAAAA
1 AAAAA-TGAAAAA
7567022 GGAGGACTCA
Statistics
Matches: 74, Mismatches: 4, Indels: 11
0.83 0.04 0.12
Matches are distributed among these distances:
16 15 0.20
17 27 0.36
18 1 0.01
19 12 0.16
20 18 0.24
21 1 0.01
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.11
Consensus pattern (18 bp):
AAAAATGAAAAAATAGAA
Found at i:7567013 original size:20 final size:19
Alignment explanation
Indices: 7566936--7567021 Score: 83
Period size: 20 Copynumber: 4.7 Consensus size: 19
7566926 TGAAAAAAGG
*
7566936 AAAAAATG-AAAAAAT-GA
1 AAAAAATGAAAAAAATAAA
* *
7566953 AAAAAATG-ATAAAAT--G
1 AAAAAATGAAAAAAATAAA
*
7566969 AAAAAATGAAAAAAATAGA
1 AAAAAATGAAAAAAATAAA
7566988 AAAAAATAGAAAAAAATAAA
1 AAAAAAT-GAAAAAAATAAA
7567008 AAAAAAGTGAAAAA
1 AAAAAA-TGAAAAA
7567022 GGAGGACTCA
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
16 8 0.14
17 20 0.34
19 7 0.12
20 23 0.39
21 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (19 bp):
AAAAAATGAAAAAAATAAA
Found at i:7567021 original size:10 final size:9
Alignment explanation
Indices: 7566921--7567011 Score: 104
Period size: 8 Copynumber: 10.6 Consensus size: 9
7566911 ACTATGCTTG
7566921 AAAAATG-A
1 AAAAATGAA
*
7566929 AAAAA-GGA
1 AAAAATGAA
7566937 AAAAATG-A
1 AAAAATGAA
7566945 AAAAATGAA
1 AAAAATGAA
7566954 AAAAATG-A
1 AAAAATGAA
*
7566962 TAAAATG-A
1 AAAAATGAA
7566970 AAAAATGAA
1 AAAAATGAA
7566979 AAAAATAGAA
1 AAAAAT-GAA
7566989 AAAAATAGAA
1 AAAAAT-GAA
7566999 AAAAAT-AA
1 AAAAATGAA
7567007 AAAAA
1 AAAAA
7567012 AAGTGAAAAA
Statistics
Matches: 76, Mismatches: 2, Indels: 10
0.86 0.02 0.11
Matches are distributed among these distances:
7 1 0.01
8 40 0.53
9 16 0.21
10 19 0.25
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AAAAATGAA
Found at i:7568079 original size:41 final size:40
Alignment explanation
Indices: 7568029--7568443 Score: 521
Period size: 41 Copynumber: 10.1 Consensus size: 40
7568019 TGATTGTCAG
* *
7568029 GGAGTAATTTTTTTTTCAAAGTTCCGT-TGCCTCTGTTTAGA
1 GGAGCAATTTATTTTTCAAAG-T-CGTGTGCCTCTGTTTAGA
*
7568070 GGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTATTTAGA
1 GGAGCAATTTATTTTTCAAAGTCGT-GTGCCTCTGTTTAGA
*
7568111 GGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTATTTTTCAAAGTCGT-GTGCCTCTGTTTAGA
* * *
7568152 GGAGCAATTTATTTTCCAAAGTCGTGGTACATCTGTTTAGA
1 GGAGCAATTTATTTTTCAAAGTCGT-GTGCCTCTGTTTAGA
* *
7568193 GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTATTTTTCAAAGTCGT-GTGCCTCTGTTTAGA
* *
7568234 GGAGCAGTTTATTTTTCAAAGTCGTGGTGCCTCTATTTAGA
1 GGAGCAATTTATTTTTCAAAGTCGT-GTGCCTCTGTTTAGA
* * *
7568275 GGGGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTATTTTTCAAAGTCGT-GTGCCTCTGTTTAGA
7568316 GGAGCAATTTATTTTTCAAAGTTCCGT-TGCCTCTGTTTAGA
1 GGAGCAATTTATTTTTCAAAG-T-CGTGTGCCTCTGTTTAGA
* *
7568357 GGAGCAATTTA-TTTTCAAAAGTTGTGGTGCCTCTATTTAGA
1 GGAGCAATTTATTTTTC-AAAGTCGT-GTGCCTCTGTTTAGA
* * *
7568398 GGAGCAATTTACTTTTCAAAGTCGTTGAGCCTCTATTTAGA
1 GGAGCAATTTATTTTTCAAAGTCG-TGTGCCTCTGTTTAGA
7568439 GGAGC
1 GGAGC
7568444 TTTGTTCAAA
Statistics
Matches: 337, Mismatches: 28, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
39 5 0.01
40 7 0.02
41 315 0.93
42 7 0.02
43 3 0.01
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (40 bp):
GGAGCAATTTATTTTTCAAAGTCGTGTGCCTCTGTTTAGA
Found at i:7568147 original size:82 final size:82
Alignment explanation
Indices: 7568056--7568443 Score: 609
Period size: 82 Copynumber: 4.7 Consensus size: 82
7568046 AAAGTTCCGT
7568056 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTT
1 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTT
*
7568121 ACTTTTCAAAGTCGTGG
66 ACTTTCCAAAGTCGTGG
* * * *
7568138 TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTACATCTGTTTAGAGGAGCAATTT
1 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTT
7568203 ACTTTCCAAAGTCGTGG
66 ACTTTCCAAAGTCGTGG
* *
7568220 TGCCTCTGTTTAGAGGAGCAGTTTATTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGGGCAATTT
1 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTT
7568285 ACTTTCCAAAGTCGTGG
66 ACTTTCCAAAGTCGTGG
*
7568302 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCCGT--TGCCTCTGTTTAGAGGAGCAAT
1 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAG-T-CGTGGTGCCTCTATTTAGAGGAGCAAT
* * *
7568365 TTATTTTCAAAAGTTGTGG
64 TTACTTTCCAAAGTCGTGG
* * * *
7568384 TGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTCGTTGAGCCTCTATTTAGAGGAGC
1 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGC
7568444 TTTGTTCAAA
Statistics
Matches: 281, Mismatches: 21, Indels: 8
0.91 0.07 0.03
Matches are distributed among these distances:
80 3 0.01
81 1 0.00
82 273 0.97
83 1 0.00
84 3 0.01
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.37
Consensus pattern (82 bp):
TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTT
ACTTTCCAAAGTCGTGG
Found at i:7568474 original size:14 final size:14
Alignment explanation
Indices: 7568451--7568497 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
7568441 AGCTTTGTTC
7568451 AAAAAC-AAAAAAA
1 AAAAACAAAAAAAA
*
7568464 AAAAACAAAAAAAC
1 AAAAACAAAAAAAA
7568478 AAAAACAAAAAAATA
1 AAAAACAAAAAAA-A
7568493 AAAAA
1 AAAAA
7568498 TGACAATGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 6 0.20
14 19 0.63
15 5 0.17
ACGTcount: A:0.89, C:0.09, G:0.00, T:0.02
Consensus pattern (14 bp):
AAAAACAAAAAAAA
Found at i:7568477 original size:21 final size:22
Alignment explanation
Indices: 7568451--7568497 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
7568441 AGCTTTGTTC
7568451 AAAAACAAAAA-AAAAAAACAA
1 AAAAACAAAAACAAAAAAACAA
*
7568472 AAAAACAAAAACAAAAAAATAA
1 AAAAACAAAAACAAAAAAACAA
7568494 AAAA
1 AAAA
7568498 TGACAATGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.89, C:0.09, G:0.00, T:0.02
Consensus pattern (22 bp):
AAAAACAAAAACAAAAAAACAA
Found at i:7568713 original size:16 final size:17
Alignment explanation
Indices: 7568694--7568735 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
7568684 TCTTTTGTAT
7568694 TTTATGTATT-TTATTA
1 TTTATGTATTATTATTA
7568710 TTTAT-TATTATTATTA
1 TTTATGTATTATTATTA
7568726 -TTATGTATTA
1 TTTATGTATTA
7568736 ATATATGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.33
16 16 0.67
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (17 bp):
TTTATGTATTATTATTA
Found at i:7569463 original size:20 final size:20
Alignment explanation
Indices: 7569438--7569479 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
7569428 GACGAACTTT
*
7569438 CGGTGAAAAAACCCAGATTC
1 CGGTGAAAAAACCCAGAATC
*
7569458 CGGTGACAAAACCCAGAATC
1 CGGTGAAAAAACCCAGAATC
7569478 CG
1 CG
7569480 ACGAAAATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.38, C:0.29, G:0.21, T:0.12
Consensus pattern (20 bp):
CGGTGAAAAAACCCAGAATC
Found at i:7570193 original size:59 final size:58
Alignment explanation
Indices: 7569971--7570189 Score: 284
Period size: 58 Copynumber: 3.7 Consensus size: 58
7569961 AAAAATTCCA
* *
7569971 AAAAAAATATTTCTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTTC
1 AAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTT-----AAAAATAAATTTTC
*
7570034 -AAAAAATATTTATTGGG-AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAAATATTT-TTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
7570091 AAAAAAAGGATTTTT-AGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
1 AAAAAAA-TATTTTTGGGA-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
7570149 AAAAAAATAATTTTTGGGAAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAT-ATTTTTGGGAAAAAGTTGAAAGTATCAATTTT
7570190 TCCTACACAA
Statistics
Matches: 142, Mismatches: 7, Indels: 19
0.85 0.04 0.11
Matches are distributed among these distances:
57 15 0.11
58 47 0.33
59 40 0.28
62 36 0.25
63 4 0.03
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.34
Consensus pattern (58 bp):
AAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:7572833 original size:75 final size:75
Alignment explanation
Indices: 7572741--7572892 Score: 259
Period size: 75 Copynumber: 2.0 Consensus size: 75
7572731 TTTCGACTAG
* *
7572741 ATTCACACAAAAGAGGGGCAACTTAATTTTTTGTTACGTGATATATTTGATTTGAATATTATTTG
1 ATTCACACAAAACAGGGGCAACTTAATTTTTCGTTACGTGATATATTTGATTTGAATATTATTTG
7572806 AAGTTATTTT
66 AAGTTATTTT
* * *
7572816 ATTCACATAAAACAGGGGCAATTTGATTTTTCGTTACGTGATATATTTGATTTGAATATTATTTG
1 ATTCACACAAAACAGGGGCAACTTAATTTTTCGTTACGTGATATATTTGATTTGAATATTATTTG
7572881 AAGTTATTTT
66 AAGTTATTTT
7572891 AT
1 AT
7572893 CATATCATAT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.45
Consensus pattern (75 bp):
ATTCACACAAAACAGGGGCAACTTAATTTTTCGTTACGTGATATATTTGATTTGAATATTATTTG
AAGTTATTTT
Found at i:7573247 original size:21 final size:21
Alignment explanation
Indices: 7573184--7573248 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
7573174 AATTGTTAAT
7573184 TTAGTTTAAGTGAGATTAAAAA
1 TTAGTTTAAGTGAGATT-AAAA
* * * *
7573206 TAATTGTTAA-TGGGTAGTAAAA
1 TTAGT-TTAAGTGAG-ATTAAAA
7573228 TTAGTTTAAGTGAGATTAAAA
1 TTAGTTTAAGTGAGATTAAAA
7573249 ATAATAATAA
Statistics
Matches: 32, Mismatches: 8, Indels: 7
0.68 0.17 0.15
Matches are distributed among these distances:
21 10 0.31
22 16 0.50
23 6 0.19
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (21 bp):
TTAGTTTAAGTGAGATTAAAA
Found at i:7575459 original size:13 final size:13
Alignment explanation
Indices: 7575441--7575465 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7575431 GGTTTGATGA
7575441 TTTATTTATTTAT
1 TTTATTTATTTAT
7575454 TTTATTTATTTA
1 TTTATTTATTTA
7575466 ATCCCGACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTATTTAT
Found at i:7576854 original size:36 final size:37
Alignment explanation
Indices: 7576743--7576854 Score: 107
Period size: 36 Copynumber: 3.2 Consensus size: 37
7576733 TTTCCGTATT
7576743 AATA-ATTCATATATTTATA-TA-AT-ATAAA-ATAA
1 AATATATTCATATATTTATATTATATAATAAATATAA
* **
7576775 TAT-TAATTCATATATTTATATTATATTTTAAATA-AA
1 AATAT-ATTCATATATTTATATTATATAATAAATATAA
7576811 AATTATATT-ATA-ATTTATATTAATATAATAAATATAA
1 AA-TATATTCATATATTTATATT-ATATAATAAATATAA
7576848 AATATAT
1 AATATAT
7576855 ATTTTAATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 16
0.76 0.06 0.19
Matches are distributed among these distances:
32 2 0.03
33 15 0.23
34 2 0.03
35 11 0.17
36 25 0.38
37 9 0.14
38 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (37 bp):
AATATATTCATATATTTATATTATATAATAAATATAA
Found at i:7576857 original size:38 final size:38
Alignment explanation
Indices: 7576763--7576871 Score: 116
Period size: 38 Copynumber: 2.8 Consensus size: 38
7576753 ATATTTATAT
**
7576763 AATATAAAATAATATTAATTCATATATTTATATT-ATATTTTA
1 AATATAAAAT-ATA-T-ATT-ATA-ATTTATATTAATATAATA
7576805 AATA-AAAAT-TATATTATAATTTATATTAATATAATA
1 AATATAAAATATATATTATAATTTATATTAATATAATA
* *
7576841 AATATAAAATATATATTTTAATTTTTATTAA
1 AATATAAAATATATATTATAATTTATATTAA
7576872 AATTATATAT
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
35 9 0.15
36 13 0.22
37 8 0.13
38 19 0.32
39 2 0.03
41 5 0.08
42 4 0.07
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (38 bp):
AATATAAAATATATATTATAATTTATATTAATATAATA
Found at i:7576887 original size:22 final size:23
Alignment explanation
Indices: 7576845--7576897 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
7576835 ATAATAAATA
*
7576845 TAAAATATATATTTTAATTTTTAT
1 TAAAAT-TATATTATAATTTTTAT
7576869 TAAAATTATA-TATAATTTTTAT
1 TAAAATTATATTATAATTTTTAT
*
7576891 TACAATT
1 TAAAATT
7576898 TTAAATCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 17 0.63
23 4 0.15
24 6 0.22
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (23 bp):
TAAAATTATATTATAATTTTTAT
Found at i:7578611 original size:17 final size:18
Alignment explanation
Indices: 7578578--7578612 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7578568 TAATAAAAAT
7578578 ATTTAATAAAATATTTAA
1 ATTTAATAAAATATTTAA
*
7578596 ATTTAA-AAAATTTTTAA
1 ATTTAATAAAATATTTAA
7578613 TACCATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTTAATAAAATATTTAA
Found at i:7578614 original size:29 final size:30
Alignment explanation
Indices: 7578572--7578632 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 30
7578562 GATTTATAAT
7578572 AAAAATATTTAATAAAATATTTAAATT-TA
1 AAAAATATTTAATAAAATATTTAAATTATA
* ** *
7578601 AAAAATTTTTAATACCATATTTGAATTATA
1 AAAAATATTTAATAAAATATTTAAATTATA
7578631 AA
1 AA
7578633 TTTATTAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 23 0.85
30 4 0.15
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (30 bp):
AAAAATATTTAATAAAATATTTAAATTATA
Found at i:7581884 original size:6 final size:6
Alignment explanation
Indices: 7581875--7581900 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7581865 TTAAAAAATT
7581875 AATTTA AATTTA AATTTA AATTTA AA
1 AATTTA AATTTA AATTTA AATTTA AA
7581901 ATTTTATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AATTTA
Found at i:7588151 original size:23 final size:23
Alignment explanation
Indices: 7588108--7588151 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
7588098 ATTAAGTCTG
*
7588108 TCTAAATTTTGAATGAGTGTATA
1 TCTAAATTTTGAATCAGTGTATA
*
7588131 TCTAAATCTTTGAGTCA-TGTA
1 TCTAAAT-TTTGAATCAGTGTA
7588152 AATATAGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (23 bp):
TCTAAATTTTGAATCAGTGTATA
Found at i:7588418 original size:25 final size:24
Alignment explanation
Indices: 7588378--7588431 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 24
7588368 GATTCCGAAC
7588378 ATTT-TTTTTAATAAATTTAAATAA
1 ATTTATTTTTAATAAATTTAAA-AA
7588402 ATTTATTTTT-ATGAAATTTAAAAA
1 ATTTATTTTTAAT-AAATTTAAAAA
7588426 ATTTAT
1 ATTTAT
7588432 GAAAAATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 14 0.50
25 14 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTATTTTTAATAAATTTAAAAA
Found at i:7593452 original size:30 final size:29
Alignment explanation
Indices: 7593416--7593475 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
7593406 ATTAAGGAAT
*
7593416 AATATGATT-TAAAATTTTATAAAAATTATA
1 AATATGATTATAAAA--TTAAAAAAATTATA
7593446 AATATGATTAATAAAATTAAAAAAATTATA
1 AATATGATT-ATAAAATTAAAAAAATTATA
7593476 TTTTATGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 22 0.81
32 5 0.19
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (29 bp):
AATATGATTATAAAATTAAAAAAATTATA
Found at i:7601906 original size:29 final size:28
Alignment explanation
Indices: 7601864--7601922 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
7601854 TCGAATTTTA
* *
7601864 TTATTTTATTTAAATAAATTTTTATATTT
1 TTATTATATCTAAATAAATTTTTA-ATTT
7601893 TTATTATATCTAAATAAATTTTTAATTT
1 TTATTATATCTAAATAAATTTTTAATTT
7601921 TT
1 TT
7601923 GAATTTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (28 bp):
TTATTATATCTAAATAAATTTTTAATTT
Found at i:7601927 original size:8 final size:7
Alignment explanation
Indices: 7601909--7601964 Score: 53
Period size: 7 Copynumber: 7.7 Consensus size: 7
7601899 TATCTAAATA
7601909 AATTTTT
1 AATTTTT
7601916 AATTTTT
1 AATTTTT
7601923 GAA-TTTT
1 -AATTTTT
7601930 AA-TTTT
1 AATTTTT
*
7601936 AATTTAAATA
1 AATTT---TT
7601946 AATTTTT
1 AATTTTT
7601953 AATTTTT
1 AATTTTT
7601960 AATTT
1 AATTT
7601965 ATATATAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
6 8 0.19
7 26 0.62
8 2 0.05
10 6 0.14
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (7 bp):
AATTTTT
Found at i:7601929 original size:36 final size:36
Alignment explanation
Indices: 7601880--7601964 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 36
7601870 TATTTAAATA
*
7601880 AATTTTTATATTTTTATTAT-ATCTAAATAAATTTTT
1 AATTTTTA-ATTTTAATTATAATCTAAATAAATTTTT
* *
7601916 AATTTTTGAATTTTAATTTTAATTTAAATAAATTTTT
1 AATTTTT-AATTTTAATTATAATCTAAATAAATTTTT
7601953 AATTTTTAATTT
1 AATTTTTAATTT
7601965 ATATATAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
36 21 0.48
37 23 0.52
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (36 bp):
AATTTTTAATTTTAATTATAATCTAAATAAATTTTT
Found at i:7601950 original size:30 final size:30
Alignment explanation
Indices: 7601916--7602007 Score: 107
Period size: 30 Copynumber: 3.1 Consensus size: 30
7601906 ATAAATTTTT
*
7601916 AATTTTTGAA-TTTTAATTT-TAATTTAAATA
1 AATTTTT-AATTTTTAATTTAT-ATATAAATA
7601946 AATTTTTAATTTTTAATTTATATATAAATA
1 AATTTTTAATTTTTAATTTATATATAAATA
** **
7601976 AATAATTAACCTTTAATTTATATATAAATA
1 AATTTTTAATTTTTAATTTATATATAAATA
7602006 AA
1 AA
7602008 CTATTAGTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
29 2 0.04
30 52 0.95
31 1 0.02
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (30 bp):
AATTTTTAATTTTTAATTTATATATAAATA
Found at i:7601956 original size:29 final size:31
Alignment explanation
Indices: 7601856--7602007 Score: 102
Period size: 30 Copynumber: 4.8 Consensus size: 31
7601846 AAAAATCATC
* *
7601856 GAATTTTATTATTT-TATTTAAATAAATTTTT
1 GAATTTT-TAATTTATATATAAATAAATTTTT
*
7601887 -ATATTTTT-A-TTATATCTAAATAAATTTTT
1 GA-ATTTTTAATTTATATATAAATAAATTTTT
*
7601916 -AATTTTTGAATTTTAATTTTAATTTAAATAAATTTTT
1 GAATTTTT-AA-TTT-A---T-ATATAAATAAATTTTT
**
7601953 -AATTTTTAATTTATATATAAATAAATAATT
1 GAATTTTTAATTTATATATAAATAAATTTTT
**
7601983 -AACCTTTAATTTATATATAAATAAA
1 GAATTTTTAATTTATATATAAATAAA
7602008 CTATTAGTAT
Statistics
Matches: 103, Mismatches: 7, Indels: 23
0.77 0.05 0.17
Matches are distributed among these distances:
28 8 0.08
29 18 0.17
30 39 0.38
31 6 0.06
32 2 0.02
33 1 0.01
34 1 0.01
35 3 0.03
36 3 0.03
37 22 0.21
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (31 bp):
GAATTTTTAATTTATATATAAATAAATTTTT
Found at i:7601964 original size:24 final size:25
Alignment explanation
Indices: 7601926--7601974 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
7601916 AATTTTTGAA
7601926 TTTTAATTTTAATTTA-A-ATAAAT
1 TTTTAATTTTAATTTATATATAAAT
7601949 TTTTAATTTTTAATTTATATATAAAT
1 TTTTAA-TTTTAATTTATATATAAAT
7601975 AAATAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 6 0.26
24 10 0.43
25 1 0.04
26 6 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (25 bp):
TTTTAATTTTAATTTATATATAAAT
Found at i:7602112 original size:20 final size:20
Alignment explanation
Indices: 7602087--7602128 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7602077 TTGAATATAA
*
7602087 TAAAAATATAA-AAAATTATT
1 TAAAAATA-AATAAAATAATT
7602107 TAAAAATAAATAAAATAATT
1 TAAAAATAAATAAAATAATT
7602127 TA
1 TA
7602129 GTGACTTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAAATAAATAAAATAATT
Found at i:7603399 original size:16 final size:16
Alignment explanation
Indices: 7603351--7603402 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
7603341 ATTATAAATT
*
7603351 TTTAAAATTTAATTTAA
1 TTTAAAA-TTAATTTTA
* *
7603368 ATTCAAATTAATTTTTA
1 TTTAAAATTAA-TTTTA
7603385 TTTAAAATTAATTTTA
1 TTTAAAATTAATTTTA
7603401 TT
1 TT
7603403 CTATTTTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 11 0.38
17 18 0.62
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTAAAATTAATTTTA
Found at i:7603425 original size:15 final size:16
Alignment explanation
Indices: 7603392--7603425 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7603382 TTATTTAAAA
*
7603392 TTAATTTTATTCTATT
1 TTAATTTTATTCGATT
7603408 TTAATTTTA-TCGATT
1 TTAATTTTATTCGATT
7603423 TTA
1 TTA
7603426 TTCGATTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.65
Consensus pattern (16 bp):
TTAATTTTATTCGATT
Found at i:7604605 original size:17 final size:18
Alignment explanation
Indices: 7604585--7604623 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
7604575 ATTTTTATTT
*
7604585 TATAAAAATTTA-AAAAA
1 TATAAAAATTAATAAAAA
7604602 TATAAAAATTAATAAAAA
1 TATAAAAATTAATAAAAA
7604620 TATA
1 TATA
7604624 TAATTTGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TATAAAAATTAATAAAAA
Found at i:7604616 original size:10 final size:9
Alignment explanation
Indices: 7604584--7604626 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 9
7604574 TATTTTTATT
7604584 TTATAAAAA
1 TTATAAAAA
7604593 TT-TAAAAA
1 TTATAAAAA
*
7604601 ATATAAAAA
1 TTATAAAAA
7604610 TTAATAAAAA
1 TT-ATAAAAA
7604620 TATATAA
1 T-TATAA
7604627 TTTGGTTTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
8 7 0.24
9 9 0.31
10 12 0.41
11 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TTATAAAAA
Found at i:7607160 original size:24 final size:21
Alignment explanation
Indices: 7607133--7607182 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 21
7607123 AATATAAATT
7607133 TAATATGATTTAAAATTTTAATAA
1 TAATAT-ATTT-AAA-TTTAATAA
7607157 TAATTATATTTAAATTTAATAA
1 TAA-TATATTTAAATTTAATAA
7607179 -AATA
1 TAATA
7607183 AAAAATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 2 0.08
21 2 0.08
22 8 0.32
23 3 0.12
24 7 0.28
25 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TAATATATTTAAATTTAATAA
Found at i:7607842 original size:48 final size:48
Alignment explanation
Indices: 7607788--7607884 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
7607778 GACTTGAAAT
7607788 TGGGATTAAGATTTAAAAATATTATTGAGTCTGATCTTATCCAGTTCA
1 TGGGATTAAGATTTAAAAATATTATTGAGTCTGATCTTATCCAGTTCA
* * *
7607836 TGGGATTAAGATTTAAAAGTATTATTGAGTTTGATCTTATCCATTTCA
1 TGGGATTAAGATTTAAAAATATTATTGAGTCTGATCTTATCCAGTTCA
7607884 T
1 T
7607885 ATACACTTTG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.42
Consensus pattern (48 bp):
TGGGATTAAGATTTAAAAATATTATTGAGTCTGATCTTATCCAGTTCA
Found at i:7613085 original size:2 final size:2
Alignment explanation
Indices: 7613078--7613105 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7613068 TTTGTACTTC
7613078 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7613106 TCTTGAGACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7615363 original size:22 final size:22
Alignment explanation
Indices: 7615337--7615398 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
7615327 CAATTAGTAA
*
7615337 TATAAGTTGAAATTCAAAG-AT
1 TATAATTTGAAATTCAAAGAAT
*
7615358 TCATAATTTG-AGTTCAAAGAAT
1 T-ATAATTTGAAATTCAAAGAAT
7615380 TATAATTTTGAAATTCAAA
1 TATAA-TTTGAAATTCAAA
7615399 AGTTCACAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
21 13 0.38
22 14 0.41
23 7 0.21
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.37
Consensus pattern (22 bp):
TATAATTTGAAATTCAAAGAAT
Found at i:7615562 original size:16 final size:16
Alignment explanation
Indices: 7615543--7615578 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
7615533 GTTCGTAAGA
7615543 TTTAGA-TTCATAAAAT
1 TTTAGATTTCA-AAAAT
7615559 TTTAGATTTCAAAAAT
1 TTTAGATTTCAAAAAT
7615575 TTTA
1 TTTA
7615579 AAGCTCGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.47
Consensus pattern (16 bp):
TTTAGATTTCAAAAAT
Found at i:7617785 original size:37 final size:37
Alignment explanation
Indices: 7617735--7617810 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
7617725 TACCAGAGTG
7617735 ATAGCTGTTGCACCCTGAAGCAAATCCTTCATAAAAA
1 ATAGCTGTTGCACCCTGAAGCAAATCCTTCATAAAAA
7617772 ATAGCTGTTGCACCCTGAAGCAAATCCTTCATAAAAA
1 ATAGCTGTTGCACCCTGAAGCAAATCCTTCATAAAAA
7617809 AT
1 AT
7617811 TAAACACAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.25
Consensus pattern (37 bp):
ATAGCTGTTGCACCCTGAAGCAAATCCTTCATAAAAA
Found at i:7618312 original size:26 final size:26
Alignment explanation
Indices: 7618283--7618335 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
7618273 AGATTCATCC
* *
7618283 GATTGTCCTACCACATCCTAAATGTG
1 GATTCTCCTACCACAACCTAAATGTG
*
7618309 GATTCTCCTGCCACAACCTAAATGTG
1 GATTCTCCTACCACAACCTAAATGTG
7618335 G
1 G
7618336 GCAAAGATAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GATTCTCCTACCACAACCTAAATGTG
Found at i:7620978 original size:26 final size:26
Alignment explanation
Indices: 7620949--7621001 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
7620939 AGATTCATCC
* *
7620949 GATTGTCCTACCACATCCTAAATGTG
1 GATTCTCCTACCACAACCTAAATGTG
*
7620975 GATTCTCCTGCCACAACCTAAATGTG
1 GATTCTCCTACCACAACCTAAATGTG
7621001 G
1 G
7621002 GCAAAGATAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GATTCTCCTACCACAACCTAAATGTG
Found at i:7626819 original size:28 final size:28
Alignment explanation
Indices: 7626756--7626822 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
7626746 TTGCATATTA
*
7626756 TAAACCCGTGCCAACCATCGCAAAGCGG
1 TAAACCTGTGCCAACCATCGCAAAGCGG
*
7626784 TTAACCTGTGCCAAACC-TCGCAAAGCGG
1 TAAACCTGTGCC-AACCATCGCAAAGCGG
7626812 -AAAGCCTGTGC
1 TAAA-CCTGTGC
7626823 ACCGGGTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 2 0.06
28 28 0.82
29 4 0.12
ACGTcount: A:0.30, C:0.33, G:0.22, T:0.15
Consensus pattern (28 bp):
TAAACCTGTGCCAACCATCGCAAAGCGG
Found at i:7632084 original size:28 final size:28
Alignment explanation
Indices: 7632024--7632093 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
7632014 TTAAATTATA
7632024 ATAAAATATTTAATATAATATTTAGATT
1 ATAAAATATTTAATATAATATTTAGATT
* * *
7632052 TTAAAATTTTTAATGTAATATTT-GAATT
1 ATAAAATATTTAATATAATATTTAG-ATT
* *
7632080 ATAAATTAATTAAT
1 ATAAAATATTTAAT
7632094 TAAAATAATA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (28 bp):
ATAAAATATTTAATATAATATTTAGATT
Found at i:7637438 original size:17 final size:17
Alignment explanation
Indices: 7637400--7637447 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
7637390 ATACGAATAA
7637400 AAAATATAAAAA--TAAT
1 AAAAT-TAAAAATTTAAT
* *
7637416 ATAATTTAAAATTTAAT
1 AAAATTAAAAATTTAAT
7637433 AAAATTAAAAATTTA
1 AAAATTAAAAATTTA
7637448 TATTTTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 5 0.19
16 4 0.15
17 17 0.65
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAATTAAAAATTTAAT
Found at i:7638705 original size:6 final size:7
Alignment explanation
Indices: 7638688--7638712 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7638678 ATTAAACGTT
7638688 TTTTTTA
1 TTTTTTA
7638695 TTTTTTA
1 TTTTTTA
7638702 TTTTTTA
1 TTTTTTA
7638709 TTTT
1 TTTT
7638713 GAACTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:7640731 original size:34 final size:35
Alignment explanation
Indices: 7640686--7640754 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 35
7640676 TGTATATGTC
* * **
7640686 AAGTTAGTTGTAGGTTTATGCTTAGAAAA-ATTTG
1 AAGTTAATTGTAGATTTATGCCCAGAAAATATTTG
*
7640720 AAGTTAATTGTATATTTATGCCCAGAAAATATTTG
1 AAGTTAATTGTAGATTTATGCCCAGAAAATATTTG
7640755 GTTTATATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
34 24 0.83
35 5 0.17
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.41
Consensus pattern (35 bp):
AAGTTAATTGTAGATTTATGCCCAGAAAATATTTG
Found at i:7645179 original size:185 final size:184
Alignment explanation
Indices: 7644815--7646122 Score: 1321
Period size: 185 Copynumber: 7.1 Consensus size: 184
7644805 ATACTAAACA
* ** * *
7644815 ATGCCTTTAATAATTTCAAAAATTTTTTTAAAAAAATTATTGAAGGTATTTGTTCTAAAAAAATG
1 ATGCCTTTAATAATCT-AAAAATTTTTTT-AAAAAATTATTGAAGGCGTTTGTTCTCAAAAAATA
* * *
7644880 CCTTCAATAATTATGTACAAAAATTAAAACG-AATTAGTGAATGCATTTTTCTAGAATAAACGCC
64 CCTTCAATAATTATGTAC-AAAATTAAAA-GAAATTAGTAAAGGTATTTTTCTAGAATAAACGCC
* * * * * * ** *
7644944 TTTACTAACTATCTTAAAATTTAAGCAGTGAAATATTGAATGTATTTTTCATTAGAAG
127 TTCACTAACCATCTTAAAATTTGAGTAGTGAAATATTAAAGGCGTTTTTCACTAGAAG
*
7645002 ATGCCTTTAATAATCCTAAAAATTTTTTTAAAAAATTATTAAAGGCGTTTGTTCT-AAAAAATTA
1 ATGCCTTTAATAAT-CTAAAAATTTTTTTAAAAAATTATTGAAGGCGTTTGTTCTCAAAAAA-TA
* *
7645066 CCTTCAATAATTATGT-CAAAATTTAAAAGAAATTATTAAAGGCACTTTTT-TAGAATAAACGCC
64 CCTTCAATAATTATGTACAAAA-TTAAAAGAAATTAGTAAAGGTA-TTTTTCTAGAATAAACGCC
* * *
7645129 TTCACTAATCATCTTAAAATTTGAGTACTGATATATTAAAGGCGTTTTTCACTAGAA-
127 TTCACTAACCATCTTAAAATTTGAGTAGTGAAATATTAAAGGCGTTTTTCACTAGAAG
* * * * * * *
7645186 AGTACCTTTAATAATTCCAAAAA-TTTTTAAAATGAAATTATTAAAGACGTTCGTTCTCAAGAAA
1 A-TGCCTTTAATAA-TCTAAAAATTTTTTTAAA--AAATTATTGAAGGCGTTTGTTCTCAAAAAA
* * * *
7645250 TGCCTTCAATAATTATGTACATAAATTAAATA-AAATCAGTAAAGGTATTTTTCTAGAATAGATG
62 TACCTTCAATAATTATGTACA-AAATTAAA-AGAAATTAGTAAAGGTATTTTTCTAGAATAAACG
* * *
7645314 CCTTCACTAACCGTTTTAAAATTTGAGTAGTGAACTATTAAAGGCG-TTTTCACTAGAAG
125 CCTTCACTAACCATCTTAAAATTTGAGTAGTGAAATATTAAAGGCGTTTTTCACTAGAAG
** ** *
7645373 ACACCTTTAATAATCTCAAAAA-TTTTAAAAAAAATTATTGAAGGTGTTTGTTCTCAAAAAATAC
1 ATGCCTTTAATAATCT-AAAAATTTTTTTAAAAAATTATTGAAGGCGTTTGTTCTCAAAAAATAC
* * *
7645437 CTTCAATAATTATGTACAAAATTTTAAAAG-AATTATTGAAGGTATTTTTCTAGAATAAATGCCT
65 CTTCAATAATTATGTACAAAA--TTAAAAGAAATTAGTAAAGGTATTTTTCTAGAATAAACGCCT
* * *
7645501 TCACTAATCATCTTAAAATTTGAATAGT-AGAATATTAAAGGCGTTTTTCATTAGAAG
128 TCACTAACCATCTTAAAATTTGAGTAGTGA-AATATTAAAGGCGTTTTTCACTAGAAG
* * * * *
7645558 ACGCTTTTAATAATCCT-AAAATTTTTTTAAAAAAATTTATTGAAGGTGTTTATTATCAAAAAAT
1 ATGCCTTTAATAAT-CTAAAAATTTTTTT-AAAAAA-TTATTGAAGGCGTTTGTTCTCAAAAAAT
* * * * * *
7645622 AACTTCAATAATTATATACAAATTTTAAAATAAATTATTAAAGGTATTTTCCTAGAATAAAC-CC
63 ACCTTCAATAATTATGTACAAA-ATTAAAAGAAATTAGTAAAGGTATTTTTCTAGAATAAACGCC
** *
7645686 TTCACTAACTGTCTTAAAATTT-AGTAGTGAAATATTGAAGGCG-TTTTCACTAGAAG
127 TTCACTAACCATCTTAAAATTTGAGTAGTGAAATATTAAAGGCGTTTTTCACTAGAAG
* * * * *
7645742 -T-CGCTTT--TAAT-GAATAAATTTTCTAAAATGAAATTATTGAAGGCATTGGTTCTCAAAAAA
1 ATGC-CTTTAATAATCTAA-AAATTTTTTTAAA--AAATTATTGAAGGCGTTTGTTCTCAAAAAA
* * * * * *
7645802 CACCTTCAATAATTATGTACATAAATTAAATGAAATCAATAAAGGTGTTTTTCTAGAATAAA-AC
62 TACCTTCAATAATTATGTACA-AAATTAAAAGAAATTAGTAAAGGTATTTTTCTAGAATAAACGC
* *
7645866 CTTCACTAACCATCTTAAAATTTGAGTAGTGAAATATTAAAGGCATTTTTCACTGGAAG
126 CTTCACTAACCATCTTAAAATTTGAGTAGTGAAATATTAAAGGCGTTTTTCACTAGAAG
* * * * * *
7645925 ACT-CCTTTAATAATCTCAAAAAATTTTTTAAAAAATTATTGAAAGCATTTGTTCCCAAAGAATG
1 A-TGCCTTTAATAATCT-AAAAATTTTTTTAAAAAATTATTGAAGGCGTTTGTTCTCAAAAAATA
* * * * *
7645989 CCTTTAATAATTATGTACATAAATTAAAA-AAAATAGTGAAGGTGTTTTTCTAGAATAAACGCTT
64 CCTTCAATAATTATGTACA-AAATTAAAAGAAATTAGTAAAGGTATTTTTCTAGAATAAACGCCT
* * * * ** * *
7646053 TCACTAACCGTCTTGAATTTTGAGTAGTGAAATATTGAAGGTATTTTGCACTAGAAA
128 TCACTAACCATCTTAAAATTTGAGTAGTGAAATATTAAAGGCGTTTTTCACTAGAAG
* *
7646110 ACGCCTTCAATAA
1 ATGCCTTTAATAA
7646123 ATTTCTTCAA
Statistics
Matches: 947, Mismatches: 129, Indels: 92
0.81 0.11 0.08
Matches are distributed among these distances:
180 4 0.00
181 105 0.11
182 25 0.03
183 19 0.02
184 172 0.18
185 267 0.28
186 165 0.17
187 183 0.19
188 7 0.01
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (184 bp):
ATGCCTTTAATAATCTAAAAATTTTTTTAAAAAATTATTGAAGGCGTTTGTTCTCAAAAAATACC
TTCAATAATTATGTACAAAATTAAAAGAAATTAGTAAAGGTATTTTTCTAGAATAAACGCCTTCA
CTAACCATCTTAAAATTTGAGTAGTGAAATATTAAAGGCGTTTTTCACTAGAAG
Found at i:7645541 original size:371 final size:367
Alignment explanation
Indices: 7644818--7646122 Score: 1426
Period size: 371 Copynumber: 3.5 Consensus size: 367
7644808 CTAAACAATG
* * * *
7644818 CCTTTAATAATTTCAAAAATTTTTTTAAAAAAATTATTGAAGGTATTTGTTCTAAAAAAATGCCT
1 CCTTTAATAATTCCAAAAA--TTTTTAAAAAAATTATTAAAGGCATTTGTTCTCAAAAAATGCCT
* * * * * *
7644883 TCAATAATTATGTACAAAAATTAAAACGAATTAGTGAATGCATTTTTCTAGAATAAACGCCTTTA
64 TCAATAATTATGTACATAAATTAAAACAAATTAGTAAAGGTATTTTTCTAGAATAAACGCCTTCA
** * * * *** * *
7644948 CTAACTATCTTAAAATTTAAGCAGTGAAATATTGAATGTATTTTTCATTAGAAGATGCCTTTAAT
129 CTAACCGTCTTAAAATTTGAGTAGTGAAATATT-AAAGGCGTTTTCACTAGAAGACGCCTTTAAT
** *
7645013 AATC-CTAAAAATTTTTTTAAAAAATTATTAAAGGCGTTTGTTCT-AAAAAATTACCTTCAATAA
193 AATCTC-AAAAA-TTTTAAAAAAAATTATTGAAGGCGTTTGTTCTCAAAAAA-TACCTTCAATAA
*
7645076 TTATGT-CAAAATTTAAAAGAAATTATTAAAGGCACTTTTT-TAGAATAAACGCCTTCACTAATC
255 TTATGTACAAAATTTAAAAGAAATTATTAAAGGTA-TTTTTCTAGAATAAA-GCCTTCACTAATC
*
7645139 ATCTTAAAATTTGAGTACTGATATATTAAAGGCGTTTTTCACTAGAAAGTA
318 ATCTTAAAATTTGAGTAGTGA-ATATTAAAGGCGTTTTTCACTAGAAAGTA
* * * *
7645190 CCTTTAATAATTCCAAAAATTTTTAAAATGAAATTATTAAAGACGTTCGTTCTCAAGAAATGCCT
1 CCTTTAATAATTCCAAAAATTTTTAAAA--AAATTATTAAAGGCATTTGTTCTCAAAAAATGCCT
* * *
7645255 TCAATAATTATGTACATAAATTAAATA-AAATCAGTAAAGGTATTTTTCTAGAATAGATGCCTTC
64 TCAATAATTATGTACATAAATTAAA-ACAAATTAGTAAAGGTATTTTTCTAGAATAAACGCCTTC
* * *
7645319 ACTAACCGTTTTAAAATTTGAGTAGTGAACTATTAAAGGCGTTTTCACTAGAAGACACCTTTAAT
128 ACTAACCGTCTTAAAATTTGAGTAGTGAAATATTAAAGGCGTTTTCACTAGAAGACGCCTTTAAT
*
7645384 AATCTCAAAAATTTTAAAAAAAATTATTGAAGGTGTTTGTTCTCAAAAAATACCTTCAATAATTA
193 AATCTCAAAAATTTTAAAAAAAATTATTGAAGGCGTTTGTTCTCAAAAAATACCTTCAATAATTA
*
7645449 TGTACAAAATTTTAAAAG-AATTATTGAAGGTATTTTTCTAGAATAAATGCCTTCACTAATCATC
258 TGTACAAAA-TTTAAAAGAAATTATTAAAGGTATTTTTCTAGAATAAA-GCCTTCACTAATCATC
* *
7645513 TTAAAATTTGAATAGTAGAATATTAAAGGCGTTTTTCATTAG-AAG-A
321 TTAAAATTTGAGTAGT-GAATATTAAAGGCGTTTTTCACTAGAAAGTA
* * ** * * *
7645559 CGCTTTTAATAA-TCCTAAAATTTTTTTAAAAAAATTTATTGAAGGTGTTTATTATCAAAAAATA
1 C-C-TTTAATAATTCC-AAAA-ATTTTTAAAAAAA-TTATTAAAGGCATTTGTTCTCAAAAAATG
* * * * * *
7645623 ACTTCAATAATTATATACA-AATTTTAAAATAAATTATTAAAGGTATTTTCCTAGAATAAAC-CC
61 CCTTCAATAATTATGTACATAA-ATTAAAACAAATTAGTAAAGGTATTTTTCTAGAATAAACGCC
* * * *
7645686 TTCACTAACTGTCTTAAAATTT-AGTAGTGAAATATTGAAGGCGTTTTCACTAGAAGTCGCTTTT
125 TTCACTAACCGTCTTAAAATTTGAGTAGTGAAATATTAAAGGCGTTTTCACTAGAAGACGCCTTT
* * * * *
7645750 AATGAA--T--AAATTTTCTAAAATGAAATTATTGAAGGCATTGGTTCTCAAAAAACACCTTCAA
190 AAT-AATCTCAAAAATTT-TAAAA-AAAATTATTGAAGGCGTTTGTTCTCAAAAAATACCTTCAA
* * * * *
7645811 TAATTATGTACATAAA-TTAAATGAAATCAATAAAGGTGTTTTTCTAGAATAAAACCTTCACTAA
252 TAATTATGTACA-AAATTTAAAAGAAATTATTAAAGGTATTTTTCTAGAATAAAGCCTTCACTAA
* * * *
7645875 CCATCTTAAAATTTGAGTAGTGAAATATTAAAGGCATTTTTCACTGGAAGACT-
316 TCATCTTAAAATTTGAGTAGTG-AATATTAAAGGCGTTTTTCACTAGAA-AGTA
* * * *
7645928 CCTTTAATAATCTCAAAAAATTTTTTAAAAAATTATTGAAA-GCATTTGTTCCCAAAGAATGCCT
1 CCTTTAATAAT-TCCAAAAATTTTTAAAAAAATTATT-AAAGGCATTTGTTCTCAAAAAATGCCT
* * * * *
7645992 TTAATAATTATGTACATAAATTAAAA-AAAATAGTGAAGGTGTTTTTCTAGAATAAACGCTTTCA
64 TCAATAATTATGTACATAAATTAAAACAAATTAGTAAAGGTATTTTTCTAGAATAAACGCCTTCA
* * * ** * *
7646056 CTAACCGTCTTGAATTTTGAGTAGTGAAATATTGAAGGTATTTTGCACTAGAAAACGCCTTCAAT
129 CTAACCGTCTTAAAATTTGAGTAGTGAAATATTAAAGGCGTTTT-CACTAGAAGACGCCTTTAAT
7646121 AA
193 AA
7646123 ATTTCTTCAA
Statistics
Matches: 789, Mismatches: 112, Indels: 69
0.81 0.12 0.07
Matches are distributed among these distances:
365 26 0.03
366 67 0.08
367 109 0.14
368 95 0.12
369 49 0.06
370 97 0.12
371 198 0.25
372 147 0.19
373 1 0.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (367 bp):
CCTTTAATAATTCCAAAAATTTTTAAAAAAATTATTAAAGGCATTTGTTCTCAAAAAATGCCTTC
AATAATTATGTACATAAATTAAAACAAATTAGTAAAGGTATTTTTCTAGAATAAACGCCTTCACT
AACCGTCTTAAAATTTGAGTAGTGAAATATTAAAGGCGTTTTCACTAGAAGACGCCTTTAATAAT
CTCAAAAATTTTAAAAAAAATTATTGAAGGCGTTTGTTCTCAAAAAATACCTTCAATAATTATGT
ACAAAATTTAAAAGAAATTATTAAAGGTATTTTTCTAGAATAAAGCCTTCACTAATCATCTTAAA
ATTTGAGTAGTGAATATTAAAGGCGTTTTTCACTAGAAAGTA
Found at i:7654048 original size:34 final size:34
Alignment explanation
Indices: 7653970--7654049 Score: 81
Period size: 34 Copynumber: 2.4 Consensus size: 34
7653960 GGCGTCTCAA
* * * *
7653970 AGATATAAATGCACTAAAATAACGACGTTTTTTT
1 AGATATAAATACACTAAAATAACAACGATTTTTC
* * *
7654004 ATATACAAATACTACTAAAATAATAAC-ATTTTTC
1 AGATATAAATAC-ACTAAAATAACAACGATTTTTC
7654038 AGATATAAATAC
1 AGATATAAATAC
7654050 CGCTAATATA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
34 24 0.67
35 12 0.33
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.34
Consensus pattern (34 bp):
AGATATAAATACACTAAAATAACAACGATTTTTC
Found at i:7654326 original size:26 final size:27
Alignment explanation
Indices: 7654297--7654347 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
7654287 TTAAGATTAG
7654297 CTAATATAAATATTTA-AATACTTTCA
1 CTAATATAAATATTTATAATACTTTCA
* *
7654323 CTAATATAAATTTTTATATTACTTT
1 CTAATATAAATATTTATAATACTTT
7654348 TTTTTTATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (27 bp):
CTAATATAAATATTTATAATACTTTCA
Found at i:7657888 original size:11 final size:11
Alignment explanation
Indices: 7657872--7657897 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7657862 ACGAAATACA
7657872 AAAAATAATAT
1 AAAAATAATAT
7657883 AAAAATAATAT
1 AAAAATAATAT
7657894 AAAA
1 AAAA
7657898 TACCAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAAATAATAT
Found at i:7658313 original size:24 final size:24
Alignment explanation
Indices: 7658280--7658326 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7658270 CATAAAGAAG
* *
7658280 AAAAAAAGTCATTTTCAAAAAAAT
1 AAAAAAAGTCAGTTTAAAAAAAAT
*
7658304 AAAAAGAGTCAGTTTAAAAAAAA
1 AAAAAAAGTCAGTTTAAAAAAAA
7658327 ATAGTTTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.64, C:0.06, G:0.09, T:0.21
Consensus pattern (24 bp):
AAAAAAAGTCAGTTTAAAAAAAAT
Found at i:7659458 original size:210 final size:209
Alignment explanation
Indices: 7659063--7659445 Score: 472
Period size: 211 Copynumber: 1.8 Consensus size: 209
7659053 AATACCAAAA
* * *
7659063 TAATAAAAATGCAAGAAAAGGAAATTTTTATCCGACGATGAGATTCAAAGGTACCTCGAGTAGTG
1 TAATAAAAATGCAAGAAAAGGAAATTTTTATCCGACAATGAGATTCAAAAGTACCTCGAGTAGAG
* * * *
7659128 ATACCTACGAAATTTTTAGGTGAGAAGATTTTTTTAAATGCTACTAGTGTATTGAAGTATTTATA
66 ATACCTAAGAAATCTCTAGGTGAGAAGATTTTTTTAAATACTACTAGTGTATTGAAGTATTTATA
* * *
7659193 AAAATTTTCAATACAATAAAACTTTTTTTTCTTATAAAATAGTAATAAATAAAAATTGATTAATA
131 AAAATCTTCAATACAATAAAACTTCTTTTTCTTACAAAATA-TAATAAATAAAAATTGATTAATA
7659258 TATTAAAAATATAAG
195 TATTAAAAATATAAG
* * *
7659273 TAATAAAAATGAGAAGAAAA-GAAA-TTTTATCCGATAATGAGATTCTAAAAGTA-TTCTGAGTA
1 TAATAAAAATG-CAAGAAAAGGAAATTTTTATCCGACAATGAGATTC-AAAAGTACCTC-GAGTA
* * *
7659335 GAGATGCTTTAAGAAATCTCTAGGTGAGAAGATTTTTTGTAAAATATTACTAGTGTATTGGAA-T
63 GAGATAC-CTAAGAAATCTCTAGGTGAGAAGATTTTTT-T-AAATACTACTAGTGTATT-GAAGT
* *
7659399 ATTTATAGAAAATCTTCAATATAATTAAA-TTCCTTTTTCTT-CAAAAT
124 ATTTATA-AAAATCTTCAATACAATAAAACTT-CTTTTTCTTACAAAAT
7659446 TTTAATTAAA
Statistics
Matches: 146, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
209 21 0.14
210 31 0.21
211 33 0.23
212 1 0.01
213 31 0.21
214 29 0.20
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (209 bp):
TAATAAAAATGCAAGAAAAGGAAATTTTTATCCGACAATGAGATTCAAAAGTACCTCGAGTAGAG
ATACCTAAGAAATCTCTAGGTGAGAAGATTTTTTTAAATACTACTAGTGTATTGAAGTATTTATA
AAAATCTTCAATACAATAAAACTTCTTTTTCTTACAAAATATAATAAATAAAAATTGATTAATAT
ATTAAAAATATAAG
Found at i:7660214 original size:5 final size:5
Alignment explanation
Indices: 7660201--7660234 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
7660191 TAAAAAAGGT
* *
7660201 AAAAT AAAAC AAAAT AAAAC AAAAC AAAAC AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
7660235 ATAAAAAGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.82, C:0.12, G:0.00, T:0.06
Consensus pattern (5 bp):
AAAAC
Found at i:7660216 original size:10 final size:10
Alignment explanation
Indices: 7660201--7660240 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
7660191 TAAAAAAGGT
7660201 AAAATAAAAC
1 AAAATAAAAC
7660211 AAAATAAAAC
1 AAAATAAAAC
*
7660221 AAAACAAAAC
1 AAAATAAAAC
7660231 AAAAATAAAA
1 -AAAATAAAA
7660241 AGCAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.82, C:0.10, G:0.00, T:0.07
Consensus pattern (10 bp):
AAAATAAAAC
Found at i:7660224 original size:15 final size:16
Alignment explanation
Indices: 7660201--7660240 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
7660191 TAAAAAAGGT
*
7660201 AAAATAAAACAAAA-T
1 AAAATAAAACAAAACA
*
7660216 AAAACAAAACAAAACA
1 AAAATAAAACAAAACA
7660232 AAAATAAAA
1 AAAATAAAA
7660241 AGCAAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.82, C:0.10, G:0.00, T:0.07
Consensus pattern (16 bp):
AAAATAAAACAAAACA
Found at i:7671252 original size:49 final size:49
Alignment explanation
Indices: 7671132--7671952 Score: 683
Period size: 49 Copynumber: 17.0 Consensus size: 49
7671122 TTTTGAAAAA
* * * *
7671132 AAGATGAGATTTTAAAGTTATTGAGCCTCTACTGAAAGGAG-CTTTTTT
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * **
7671180 AAGATGA-TTTTTAAAGTCGTTAAGCCTCTGCTGAGATAAGCCTTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * *
7671228 AAGATGAGATTTTAAAATTGTTAAGCCTCTGCTGAGATGAACCCTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * *
7671277 AAGAT-AGATTTTTAAGTTGTTGAGCCTCTGTTAAGAGGAG-TTTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * *
7671324 AA-AAGAGCTTTTAAAGTTG-TGAAGCCTCTGCTGAGAAGAACCCTTTTC
1 AAGATGAGATTTTAAAGTTGTTG-AGCCTCTGCTGAGAGGAGCCTTTTTC
* * *
7671372 AAAATGAGATTTTAATGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTCC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * *
7671420 AA-AAGAGATTTTAAAGTAGTTGAGCCTCTGCTGAAATGAGCCTTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * * *
7671468 AAGATGAGATTTTAAAGTTGTTGAGGCTCTACTAAGAGAAATCC-TTTTG
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAG-GAGCCTTTTTC
* ** * *
7671517 AATATG-GATTTTAAAGTTGTTGAGCCTCTATTAAGAAGAG-CTTTTTCC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTT-C
* * * * * *
7671565 AA-AAGAGATTTTAAAGTTATGGAGCCTCTGTTGAGAGGAACCCTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * *
7671613 AAGATGAGATTTTAAAATTGTTGAGCCTCTGTTAAGAGGAG-CTTTTCC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* ** * * *
7671661 AAGATGA-TTTTTAAAGTCATTGAGCCTCTGCTAAAATGAGCCTTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * *
7671709 AAGATGAGATTTTAAAGTCGTTGAGCCTCTGCTGAGATGAGCTTTTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-CTTTTTC
* * * *
7671759 AAGATGA-TTTTTAAAGTCGTTGAGCCTCTACTGAGAGGAGCCCTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * * *
7671807 AA-AGTGA-ATTTTTAAA-TTGTTAAGCTTCCGTTAAAAGGAG-CTTTTTC
1 AAGA-TGAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
** * * * * *
7671854 AA-AAAAGATTTTAAGGTTGTGGAGCCTCTACTGAGAGGAACCCTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * ** * **
7671902 AAGATAAAAATTAGAAAGTTATTGAGCCTCTGCTGAGAGGAGTTTTTTTC
1 AAGAT-GAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
7671952 A
1 A
7671953 GATTTTAAAT
Statistics
Matches: 616, Mismatches: 132, Indels: 48
0.77 0.17 0.06
Matches are distributed among these distances:
46 11 0.02
47 150 0.24
48 190 0.31
49 213 0.35
50 52 0.08
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.35
Consensus pattern (49 bp):
AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
Found at i:7671322 original size:96 final size:96
Alignment explanation
Indices: 7671132--7671939 Score: 588
Period size: 96 Copynumber: 8.4 Consensus size: 96
7671122 TTTTGAAAAA
* * * * *
7671132 AAGATGAGATTTTAAAGTTATTGAGCCTCTACTGA-AAGGAGCTTTTTTAAGAT-GATTTTTAAA
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAACCTTTTTCAAGATAGATTTTT-AA
* * **
7671195 GTCGTTAAGCCTCTGCTGAGATAAGCCTTTTTC
65 GTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTC
* * * *
7671228 AAGATGAGATTTTAAAATTGTTAAGCCTCTGCTGAGATGAACCCTTTTCAAGATAGATTTTTAAG
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAACCTTTTTCAAGATAGATTTTTAAG
* * *
7671293 TTGTTGAGCCTCTGTTAAGAGGAGTTTTTTC
66 TTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * *
7671324 AA-AAGAGCTTTTAAAGTTG-TGAAGCCTCTGCTGAGAAGAACCCTTTTCAAAATGAGA-TTTTA
1 AAGATGAGATTTTAAAGTTGTTG-AGCCTCTGCTGAGAAGAACCTTTTTCAAGAT-AGATTTTTA
*
7671386 ATGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCC
64 A-GTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * *
7671420 AA-AAGAGATTTTAAAGTAGTTGAGCCTCTGCTGA-AATGAGCCTTTTTCAAGATGAGATTTTAA
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAA-GAACCTTTTTCAAGAT-AGATTTTTA
* * * * * * *
7671483 AGTTGTTGAGGCTCTACTAAGAGAAATCCTTTTG
64 AGTTGTTGAGCCTCTGCTGAGAG-GAGCTTTTTC
* ** * * * * *
7671517 AATATG-GATTTTAAAGTTGTTGAGCCTCTATTAAGAAG-AGCTTTTTCCAAAAGAGATTTTAAA
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAACCTTTTT-CAAGATAGATTTTTAA
* * * * *
7671580 GTTATGGAGCCTCTGTTGAGAGGAACCCTTTTC
65 GTTGTTGAGCCTCTGCTGAGAGG-AGCTTTTTC
* * * * * *
7671613 AAGATGAGATTTTAAAATTGTTGAGCCTCTGTTAAG-AGGAGCTTTTCCAAGAT-GATTTTTAAA
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAACCTTTTTCAAGATAGATTTTT-AA
** * * *
7671676 GTCATTGAGCCTCTGCTAAAATGAGCCTTTTTC
65 GTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTC
* * * *
7671709 AAGATGAGATTTTAAAGTCGTTGAGCCTCTGCTGAGATGAGCTTTTTTTCAAGAT-GATTTTTAA
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAAC-CTTTTTCAAGATAGATTTTT-A
* * *
7671773 AGTCGTTGAGCCTCTACTGAGAGGAGCCCTTTTC
64 AGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTC
* * * * * * * * *
7671807 AA-AGTGA-ATTTTTAAA-TTGTTAAGCTTCCG-TTAAAAGGAGCTTTTTCAAAAAAGA-TTTTA
1 AAGA-TGAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAACCTTTTTCAAGATAGATTTTTA
* * * *
7671867 AGGTTGTGGAGCCTCTACTGAGAGGAACCCTTTTC
64 A-GTTGTTGAGCCTCTGCTGAGAGG-AGCTTTTTC
* * ** *
7671902 AAGATAAAAATTAGAAAGTTATTGAGCCTCTGCTGAGA
1 AAGAT-GAGATTTTAAAGTTGTTGAGCCTCTGCTGAGA
7671940 GGAGTTTTTT
Statistics
Matches: 569, Mismatches: 114, Indels: 56
0.77 0.15 0.08
Matches are distributed among these distances:
94 3 0.01
95 102 0.18
96 256 0.45
97 135 0.24
98 73 0.13
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (96 bp):
AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAACCTTTTTCAAGATAGATTTTTAAG
TTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
Found at i:7671654 original size:241 final size:240
Alignment explanation
Indices: 7671132--7671788 Score: 840
Period size: 241 Copynumber: 2.7 Consensus size: 240
7671122 TTTTGAAAAA
* * * **
7671132 AAGATGAGATTTTAAAGTTATTGAGCCTCTACTGAA-AGGAGCTTTTTTAAGATGATTTTTAAAG
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCT-GTTAAGAGGAGCTTTTCCAAGATGATTTTTAAAG
* * * * * * *
7671196 TCGTTAAGCCTCTGCTGAGATAAGCCTTTTTCAAGATGAGATTTTAAAATTGTTAAGCCTCTGCT
65 TAGTTGAGCCTCTGCTGAAATGAGCCTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCTACT
* * * * *
7671261 GAGATGAACCCTTTTCAAGATAGATTTTTAAGTTGTTGAGCCTCTGTTAAGAGGAGTTTTTTCAA
130 AAGATGAACCCTTTTCAAGATAGATTTTAAAGTTGTTGAGCCTCTATTAAGAAGAGTTTTTCCAA
* *
7671326 AAGAGCTTTTAAAGTTGTGAAGCCTCTGCTGAGAAGAACCCTTTTC
195 AAGAGATTTTAAAGTTATGAAGCCTCTGCTGAGAAGAACCCTTTTC
* * * *
7671372 AAAATGAGATTTTAATGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAAAGA-GA-TTTTAAA
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGTTAAGAGGAGCTTTTCC--AAGATGATTTTTAAA
*
7671435 GTAGTTGAGCCTCTGCTGAAATGAGCCTTTTTCAAGATGAGATTTTAAAGTTGTTGAGGCTCTAC
64 GTAGTTGAGCCTCTGCTGAAATGAGCCTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCTAC
* * * *
7671500 TAAGA-GAAATCCTTTTGAATATGGATTTTAAAGTTGTTGAGCCTCTATTAAGAAGAGCTTTTTC
129 TAAGATG-AACCCTTTTCAAGATAGATTTTAAAGTTGTTGAGCCTCTATTAAGAAGAG-TTTTTC
* * *
7671564 CAAAAGAGATTTTAAAGTTATGGAGCCTCTGTTGAGAGGAACCCTTTTC
192 CAAAAGAGATTTTAAAGTTATGAAGCCTCTGCTGAGAAGAACCCTTTTC
*
7671613 AAGATGAGATTTTAAAATTGTTGAGCCTCTGTTAAGAGGAGCTTTTCCAAGATGATTTTTAAAGT
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGTTAAGAGGAGCTTTTCCAAGATGATTTTTAAAGT
* * *
7671678 CA-TTGAGCCTCTGCTAAAATGAGCCTTTTTCAAGATGAGATTTTAAAGTCGTTGAGCCTCTGCT
66 -AGTTGAGCCTCTGCTGAAATGAGCCTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCTACT
* * ** *
7671742 GAGATGAGCTTTTTTTCAAGAT-GATTTTTAAAGTCGTTGAGCCTCTA
130 AAGATGAAC-CCTTTTCAAGATAGA-TTTTAAAGTTGTTGAGCCTCTA
7671789 CTGAGAGGAG
Statistics
Matches: 358, Mismatches: 48, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
239 6 0.02
240 150 0.42
241 167 0.47
242 35 0.10
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (240 bp):
AAGATGAGATTTTAAAGTTGTTGAGCCTCTGTTAAGAGGAGCTTTTCCAAGATGATTTTTAAAGT
AGTTGAGCCTCTGCTGAAATGAGCCTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCTACTA
AGATGAACCCTTTTCAAGATAGATTTTAAAGTTGTTGAGCCTCTATTAAGAAGAGTTTTTCCAAA
AGAGATTTTAAAGTTATGAAGCCTCTGCTGAGAAGAACCCTTTTC
Found at i:7671920 original size:145 final size:144
Alignment explanation
Indices: 7671137--7671943 Score: 576
Period size: 145 Copynumber: 5.6 Consensus size: 144
7671127 AAAAAAAGAT
* * * * * * * * * *
7671137 GAGATTTTAAAGTTATTGAGCCTCTACTGAAAGG-AGCTTTTTTAAGATG-ATTTTTAAAGTCGT
1 GAGATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAACCCTTTTCAAGATGAAATTATAAAGTTGT
* ** * * * *
7671200 TAAGCCTCTGCTGAGATAAGCCTTTTTC-AAGATGAGATTTTAAAATTGTTAAGCCTCTGCTGAG
66 TGAGCCTCTGCTGAGAGGAGCCCTTTTCAAAG-TGA-ATTTTAAAGTTGTTGAGCCTCTGCT-AA
* * * * *
7671264 ATGAACCCTTTTCAAGA
128 AAGGAGCTTTTTCAAAA
* * * * * *** * ** *
7671281 TAGATTTTTAAGTTGTTGAGCCTCTGTTAAGAGG-AGTTTTTTCAA-AAGAGCTTTTAAAGTTG-
1 GAGATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAACCCTTTTCAAGATGAAATTATAAAGTTGT
* * * * * *
7671343 TGAAGCCTCTGCTGAGAAGAACCCTTTTCAAAATGAGATTTTAATGTTGTTGAGCCTCTGCTGAG
66 TG-AGCCTCTGCTGAGAGGAGCCCTTTTCAAAGTGA-ATTTTAAAGTTGTTGAGCCTCTGCTAAA
*
7671408 AGGAGCTTTTCCAAAA
129 AGGAGCTTTTTCAAAA
* * * * * * * *
7671424 GAGATTTTAAAGTAGTTGAGCCTCTGCTGAAATGAGCCTTTTTCAAGATGAGATTTTAAAGTTGT
1 GAGATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAACCCTTTTCAAGATGAAATTATAAAGTTGT
* * * * ** * * **
7671489 TGAGGCTCTACTAAGAGAAATCCTTTTGAATA-TGGATTTTAAAGTTGTTGAGCCTCTATTAAGA
66 TGAGCCTCTGCTGAGAGGAGCCCTTTTCAA-AGTGAATTTTAAAGTTGTTGAGCCTCTGCTAA-A
7671553 A-GAGCTTTTTCCAAAA
129 AGGAGCTTTTT-CAAAA
* * * * *
7671569 GAGATTTTAAAGTTATGGAGCCTCTGTTGAGAGGAACCCTTTTCAAGATGAGATTTTAAAATTGT
1 GAGATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAACCCTTTTCAAGATGAAATTATAAAGTTGT
* * * * **
7671634 TGAGCCTCTGTTAAGAGGAG--CTTTTCCAAGATGATTTTTAAAGTCATTGAGCCTCTGCTAAAA
66 TGAGCCTCTGCTGAGAGGAGCCCTTTTCAAAG-TGAATTTTAAAGTTGTTGAGCCTCTGCTAAAA
* *
7671697 TGAGCCTTTTTCAAGAT
130 GGAG-CTTTTTCAA-AA
* * * * ** * * *
7671714 GAGATTTTAAAGTCGTTGAGCCTCTGCTGAGATGAGCTTTTTTTCAAGATG-ATTTTTAAAGTCG
1 GAGATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAAC-CCTTTTCAAGATGAAATTATAAAGTTG
* * * * *
7671778 TTGAGCCTCTACTGAGAGGAGCCCTTTTCAAAGTGAATTTTTAAA-TTGTTAAGCTTCCGTTAAA
65 TTGAGCCTCTGCTGAGAGGAGCCCTTTTCAAAGTGAA-TTTTAAAGTTGTTGAGCCTCTGCTAAA
7671842 AGGAGCTTTTTCAAAA
129 AGGAGCTTTTTCAAAA
* * * * * *
7671858 AAGATTTTAAGGTTGTGGAGCCTCTACTGAGAGGAACCCTTTTCAAGATAAAAATTAGAAAGTTA
1 GAGATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAACCCTTTTCAAGAT-GAAATTATAAAGTTG
7671923 TTGAGCCTCTGCTGAGAGGAG
65 TTGAGCCTCTGCTGAGAGGAG
7671944 TTTTTTTCAG
Statistics
Matches: 522, Mismatches: 121, Indels: 39
0.77 0.18 0.06
Matches are distributed among these distances:
142 1 0.00
143 58 0.11
144 194 0.37
145 219 0.42
146 34 0.07
147 16 0.03
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.35
Consensus pattern (144 bp):
GAGATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAACCCTTTTCAAGATGAAATTATAAAGTTGT
TGAGCCTCTGCTGAGAGGAGCCCTTTTCAAAGTGAATTTTAAAGTTGTTGAGCCTCTGCTAAAAG
GAGCTTTTTCAAAA
Found at i:7672216 original size:17 final size:17
Alignment explanation
Indices: 7672190--7672270 Score: 85
Period size: 17 Copynumber: 4.6 Consensus size: 17
7672180 TATTATTATT
7672190 AAATACAAAATACAAAA
1 AAATACAAAATACAAAA
*
7672207 AAATATAAAATACAAAA
1 AAATACAAAATACAAAA
7672224 TACAA-A-AATAATAGCAAAA
1 -A-AATACAA-AATA-CAAAA
*
7672243 ATAATACAAAATATAAAA
1 A-AATACAAAATACAAAA
7672261 AAATACAAAA
1 AAATACAAAA
7672271 AATTAGAACA
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
17 27 0.49
18 14 0.25
19 12 0.22
20 2 0.04
ACGTcount: A:0.74, C:0.09, G:0.01, T:0.16
Consensus pattern (17 bp):
AAATACAAAATACAAAA
Found at i:7672243 original size:12 final size:11
Alignment explanation
Indices: 7672222--7672258 Score: 56
Period size: 12 Copynumber: 3.2 Consensus size: 11
7672212 TAAAATACAA
7672222 AATACAAAAAT
1 AATACAAAAAT
7672233 AATAGCAAAAAT
1 AATA-CAAAAAT
7672245 AATACAAAATAT
1 AATACAAAA-AT
7672257 AA
1 AA
7672259 AAAAATACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.70, C:0.08, G:0.03, T:0.19
Consensus pattern (11 bp):
AATACAAAAAT
Found at i:7672251 original size:30 final size:28
Alignment explanation
Indices: 7672191--7672271 Score: 98
Period size: 24 Copynumber: 3.0 Consensus size: 28
7672181 ATTATTATTA
*
7672191 AATACAAAATACAAAAAAAT---ATAA-
1 AATACAAAATACAAAAAAATACAAAAAT
7672215 AATACAAAATACAAAAATAATAGCAAAAAT
1 AATACAAAATACAAAAA-AATA-CAAAAAT
*
7672245 AATACAAAATATAAAAAAATACAAAAA
1 AATACAAAATACAAAAAAATACAAAAA
7672272 ATTAGAACAA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
24 17 0.35
25 3 0.06
28 6 0.12
29 7 0.14
30 16 0.33
ACGTcount: A:0.74, C:0.09, G:0.01, T:0.16
Consensus pattern (28 bp):
AATACAAAATACAAAAAAATACAAAAAT
Found at i:7672361 original size:24 final size:24
Alignment explanation
Indices: 7672334--7672412 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 24
7672324 TGCCACTATA
7672334 CCCTACCACCCATCTTTCATCATG
1 CCCTACCACCCATCTTTCATCATG
** *
7672358 CCCTACGGCA-CCA-CTGCCA-CTATA
1 CCCTAC--CACCCATCTTTCATC-ATG
7672382 CCCTACCACCCATCTTTCATCATG
1 CCCTACCACCCATCTTTCATCATG
7672406 CCCTACC
1 CCCTACC
7672413 CTTCACCTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
22 2 0.05
23 4 0.09
24 31 0.72
25 4 0.09
26 2 0.05
ACGTcount: A:0.22, C:0.48, G:0.06, T:0.24
Consensus pattern (24 bp):
CCCTACCACCCATCTTTCATCATG
Found at i:7672386 original size:48 final size:48
Alignment explanation
Indices: 7672315--7672411 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
7672305 GTGCCTTCCT
7672315 CGGCACCACTGCCACTATACCCTACCACCCATCTTTCATCATGCCCTA
1 CGGCACCACTGCCACTATACCCTACCACCCATCTTTCATCATGCCCTA
7672363 CGGCACCACTGCCACTATACCCTACCACCCATCTTTCATCATGCCCTA
1 CGGCACCACTGCCACTATACCCTACCACCCATCTTTCATCATGCCCTA
7672411 C
1 C
7672412 CCTTCACCTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.23, C:0.46, G:0.08, T:0.23
Consensus pattern (48 bp):
CGGCACCACTGCCACTATACCCTACCACCCATCTTTCATCATGCCCTA
Found at i:7672690 original size:18 final size:18
Alignment explanation
Indices: 7672667--7672719 Score: 83
Period size: 17 Copynumber: 3.1 Consensus size: 18
7672657 CTGCGCAAAG
7672667 AAAAAAAAAGTCAATTT-
1 AAAAAAAAAGTCAATTTC
7672684 AAAAAAAAAGTCAATTTC
1 AAAAAAAAAGTCAATTTC
*
7672702 AAAAAAAAAAT-AATTTC
1 AAAAAAAAAGTCAATTTC
7672719 A
1 A
7672720 CAGAAACTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
17 24 0.71
18 10 0.29
ACGTcount: A:0.66, C:0.08, G:0.04, T:0.23
Consensus pattern (18 bp):
AAAAAAAAAGTCAATTTC
Found at i:7673266 original size:21 final size:21
Alignment explanation
Indices: 7673242--7673290 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
7673232 ACAAAATTTT
* *
7673242 TTTTATTTTTTTTAAATATTA
1 TTTTATTTATTCTAAATATTA
** *
7673263 TTTTGGTTATTCTAATTATTA
1 TTTTATTTATTCTAAATATTA
7673284 TTTTATT
1 TTTTATT
7673291 AATATTTATG
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.69
Consensus pattern (21 bp):
TTTTATTTATTCTAAATATTA
Found at i:7675203 original size:18 final size:19
Alignment explanation
Indices: 7675180--7675215 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7675170 TTTCTGTATT
7675180 TTGAG-AAATGGCTTTTTA
1 TTGAGAAAATGGCTTTTTA
*
7675198 TTGAGAAAATTGCTTTTT
1 TTGAGAAAATGGCTTTTT
7675216 GATCATTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.47
Consensus pattern (19 bp):
TTGAGAAAATGGCTTTTTA
Found at i:7679274 original size:62 final size:61
Alignment explanation
Indices: 7679159--7679277 Score: 143
Period size: 62 Copynumber: 1.9 Consensus size: 61
7679149 ATCAAAGAAG
* * *
7679159 ATTATTAAAAGTATTTTTAATCAAAATTACTTTAAATAATCTTGGTCACAAAATTGAGAGGA
1 ATTATTAAAAATATTTTTAATCAAAAATACTTTAAATAATCTT-GTCAAAAAATTGAGAGGA
* *
7679221 ATTATTAAAAATATTTTTGA-CAAAAAATACTTTAAATAATTTCTT-TTAAAAAATTGA
1 ATTATTAAAAATATTTTTAATC-AAAAATACTTTAAATAA--TCTTGTCAAAAAATTGA
7679278 AAAAAAAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
61 1 0.02
62 44 0.90
64 4 0.08
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.39
Consensus pattern (61 bp):
ATTATTAAAAATATTTTTAATCAAAAATACTTTAAATAATCTTGTCAAAAAATTGAGAGGA
Found at i:7683398 original size:41 final size:41
Alignment explanation
Indices: 7683341--7683428 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
7683331 AAAAAAAAAA
* *
7683341 AACTCACGTGTATGTTATCTTCAACACATAAATCTCAAACC
1 AACTCACGCGCATGTTATCTTCAACACATAAATCTCAAACC
7683382 AACTCACGCGCATGTTATCTTCAACACATAAATCTCAAACC
1 AACTCACGCGCATGTTATCTTCAACACATAAATCTCAAACC
7683423 AACTCA
1 AACTCA
7683429 ATTTCTACCG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.38, C:0.30, G:0.07, T:0.26
Consensus pattern (41 bp):
AACTCACGCGCATGTTATCTTCAACACATAAATCTCAAACC
Found at i:7685748 original size:76 final size:77
Alignment explanation
Indices: 7685599--7685748 Score: 216
Period size: 77 Copynumber: 2.0 Consensus size: 77
7685589 CTAAACTTAA
* *
7685599 TAAAAAAAAATCCAAAATTTAAGTACTTTCAGCTCAACCCAAGCAATACCCCAAAACCAAAACAC
1 TAAAAAAAAATCCAAAATTTAAGCACTTTCAGCTCAAACCAAGCAATACCCCAAAACCAAAACAC
7685664 TCCAAAAACCTT
66 TCCAAAAACCTT
* * *
7685676 TAAAAAAAAA-CTCAAAATTT-AGACACTTTCAGCTCAAACCAAGTAATA-CCCGACACCAAAAC
1 TAAAAAAAAATC-CAAAATTTAAG-CACTTTCAGCTCAAACCAAGCAATACCCCAAAACCAAAAC
7685738 ACTCCAAAAAC
64 ACTCCAAAAAC
7685749 GTGAAAAAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
76 26 0.39
77 40 0.61
ACGTcount: A:0.50, C:0.28, G:0.05, T:0.17
Consensus pattern (77 bp):
TAAAAAAAAATCCAAAATTTAAGCACTTTCAGCTCAAACCAAGCAATACCCCAAAACCAAAACAC
TCCAAAAACCTT
Found at i:7685757 original size:76 final size:76
Alignment explanation
Indices: 7685600--7685761 Score: 211
Period size: 76 Copynumber: 2.1 Consensus size: 76
7685590 TAAACTTAAT
* * *
7685600 AAAAAAAAATCCAAAATTTAAGTACTTTCAGCTCAACCCAAGCAATACCCCAAAACCAAAACACT
1 AAAAAAAAAACCAAAATTTAAGCACTTTCAGCTCAAACCAAGCAATACCCCAAAACCAAAACACT
*
7685665 CCAAAAACCTT
66 CCAAAAACCTG
* * * *
7685676 TAAAAAAAAACTCAAAATTT-AGACACTTTCAGCTCAAACCAAGTAATA-CCCGACACCAAAACA
1 AAAAAAAAAAC-CAAAATTTAAG-CACTTTCAGCTCAAACCAAGCAATACCCCAAAACCAAAACA
*
7685739 CTCCAAAAACGTG
64 CTCCAAAAACCTG
7685752 AAAAAAAAAA
1 AAAAAAAAAA
7685762 AAAAAACTCA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
76 44 0.59
77 30 0.41
ACGTcount: A:0.52, C:0.26, G:0.06, T:0.16
Consensus pattern (76 bp):
AAAAAAAAAACCAAAATTTAAGCACTTTCAGCTCAAACCAAGCAATACCCCAAAACCAAAACACT
CCAAAAACCTG
Found at i:7686618 original size:21 final size:21
Alignment explanation
Indices: 7686575--7686620 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
7686565 AAATTTAAAT
*
7686575 TTTTAATTAAATTCATGAATTA
1 TTTTAATTAAATT-ATAAATTA
7686597 TTTTAATTAAA-TATTAAATTA
1 TTTTAATTAAATTA-TAAATTA
7686618 TTT
1 TTT
7686621 AAAATCAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 1 0.05
21 10 0.45
22 11 0.50
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
TTTTAATTAAATTATAAATTA
Found at i:7687289 original size:27 final size:27
Alignment explanation
Indices: 7687256--7687308 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
7687246 GTGAATAATG
* *
7687256 TATTATTATACACTCGAAAATCAAATT
1 TATTATTATACACTCAAAAATAAAATT
7687283 TATTATTATACACTCAAAAATAAAAT
1 TATTATTATACACTCAAAAATAAAAT
7687309 AACTAACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (27 bp):
TATTATTATACACTCAAAAATAAAATT
Found at i:7687963 original size:13 final size:13
Alignment explanation
Indices: 7687945--7687969 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7687935 TAAGTCATGT
7687945 TATTTTCATATTC
1 TATTTTCATATTC
7687958 TATTTTCATATT
1 TATTTTCATATT
7687970 ATATCGTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTCATATTC
Found at i:7691034 original size:7 final size:7
Alignment explanation
Indices: 7691022--7691048 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7691012 AATAAGAACT
7691022 ATAAAAA
1 ATAAAAA
7691029 ATAAAAA
1 ATAAAAA
7691036 ATAAAAA
1 ATAAAAA
7691043 ATAAAA
1 ATAAAA
7691049 TAAATGGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
ATAAAAA
Found at i:7691513 original size:13 final size:13
Alignment explanation
Indices: 7691479--7691503 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7691469 TGCCAAAAAA
7691479 AAAATCAAATTAG
1 AAAATCAAATTAG
7691492 AAAATCAAATTA
1 AAAATCAAATTA
7691504 AAATTACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.04, T:0.24
Consensus pattern (13 bp):
AAAATCAAATTAG
Found at i:7696822 original size:13 final size:13
Alignment explanation
Indices: 7696804--7696829 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7696794 TCAGAAAAAG
7696804 AAAATTTGTGTCA
1 AAAATTTGTGTCA
7696817 AAAATTTGTGTCA
1 AAAATTTGTGTCA
7696830 GGTTATTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
AAAATTTGTGTCA
Found at i:7709700 original size:48 final size:48
Alignment explanation
Indices: 7709600--7710468 Score: 697
Period size: 49 Copynumber: 18.0 Consensus size: 48
7709590 ATTTTGAAAA
* * * *
7709600 AAGATGAGATTTTAAAGTTATTGAGCCTCTGCTAAAAGGAG-CTTTTTT
1 AAGATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * *
7709648 AAGATGATTTTTAAAGTCGTTAAGCCTCTACTGAGATGAGCCTTTTTC
1 AAGATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * *
7709696 AAGATGAGATTTTAAAATTGTTAAGCCTCTGCTGAGATGAGCCCTTTTC
1 AAGATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * *
7709745 AAGATGAATTTTTAAGTTATTGAGCCTCTGTTAAGAGGAG-TTTTTTC
1 AAGATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * *
7709792 AA-AAGAGCTTTTAAAGTTG-TGAAGCCTCTGCTGAGAAGAATCC-TTTTC
1 AAGATGA-ATTTTAAAGTTGTTG-AGCCTCTGCTGAG-AGGAGCCTTTTTC
*
7709840 AAGATGAGATTTTAAAGTTGTTGAGTCTCTGCTGAGAGGAGCC--TTTC
1 AAGATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* *
7709887 AAGATGACTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTCC
1 AAGATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * *
7709934 AA-AAGAGATTTTAAAGTAGTTGAGCCTCTGCTGAAATGAGCCTTTTTT
1 AAGATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * * *
7709982 AAGATGAGATTTTAAAGTTGTTGAGGCTCTACTGAGAGAAACCCTTTTG
1 AAGATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * ** *
7710031 AATATGGATTTTAAAATTGTTGAGCCTCTATTAAGAGGAG-CTTTTTCC
1 AAGATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTT-C
* * * * * * *
7710079 AA-AAGAGATTTTAAAGTTATGGAGCCTCTGTTGAGAGGAACCCTTTCC
1 AAGATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * *
7710127 AAGATGAGATTTTAAAATTGTTGAGCCTCTGCTAAGAGGAGCC-TTTCC
1 AAGATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* ** * * *
7710175 AAGATGATTTTTAAAGTCATTGAGCCTCTGCTAAAATGAGCCTTTTTC
1 AAGATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * *
7710223 AAGATGAGATTTTAAAGTCGTTGAGCCTCTGCTGAGATGAGCTTTTTTTTTC
1 AAGATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC---CTTTTTC
* * * *
7710275 AAGATGATTTTTAAAGTCGTTGAGCCTCTGCTGAAAGGAGCCCTTTTC
1 AAGATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * * *
7710323 AAGGTGGATTTTTAAA-TTGTTAAGCTTCTGTTAAGAGGAG-CTTTTTC
1 AAGAT-GAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
** * * * * *
7710370 AA-AAAAGATTTTAAGGTTGTGGAGCCTCTACTGAGAGGAACCCTTTTC
1 AAGATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* ** * * **
7710418 AAGATAAAAATTAGAAAGTTATTGAGCCTCTACTGAGAGGAGTTTTTTTC
1 AAGAT--GAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
7710468 A
1 A
7710469 GATTTTAAAT
Statistics
Matches: 660, Mismatches: 132, Indels: 56
0.78 0.16 0.07
Matches are distributed among these distances:
45 2 0.00
46 45 0.07
47 158 0.24
48 185 0.28
49 189 0.29
50 35 0.05
51 33 0.05
52 13 0.02
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (48 bp):
AAGATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
Found at i:7709720 original size:49 final size:49
Alignment explanation
Indices: 7709600--7710468 Score: 756
Period size: 48 Copynumber: 18.0 Consensus size: 49
7709590 ATTTTGAAAA
* * * *
7709600 AAGATGAGATTTTAAAGTTATTGAGCCTCTGCTAAAAGGAG-CTTTTTT
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * *
7709648 AAGATGA-TTTTTAAAGTCGTTAAGCCTCTACTGAGATGAGCCTTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * *
7709696 AAGATGAGATTTTAAAATTGTTAAGCCTCTGCTGAGATGAGCCCTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * *
7709745 AAGATGA-ATTTTTAAGTTATTGAGCCTCTGTTAAGAGGAG-TTTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * *
7709792 AA-AAGAGCTTTTAAAGTTG-TGAAGCCTCTGCTGAGAAGAATCC-TTTTC
1 AAGATGAGATTTTAAAGTTGTTG-AGCCTCTGCTGAG-AGGAGCCTTTTTC
*
7709840 AAGATGAGATTTTAAAGTTGTTGAGTCTCTGCTGAGAGGAGCC--TTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* *
7709887 AAGATGA-CTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTCC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * *
7709934 AA-AAGAGATTTTAAAGTAGTTGAGCCTCTGCTGAAATGAGCCTTTTTT
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * * *
7709982 AAGATGAGATTTTAAAGTTGTTGAGGCTCTACTGAGAGAAACCCTTTTG
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * ** *
7710031 AATATG-GATTTTAAAATTGTTGAGCCTCTATTAAGAGGAG-CTTTTTCC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTT-C
* * * * * * *
7710079 AA-AAGAGATTTTAAAGTTATGGAGCCTCTGTTGAGAGGAACCCTTTCC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * *
7710127 AAGATGAGATTTTAAAATTGTTGAGCCTCTGCTAAGAGGAGCC-TTTCC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* ** * * *
7710175 AAGATGA-TTTTTAAAGTCATTGAGCCTCTGCTAAAATGAGCCTTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * *
7710223 AAGATGAGATTTTAAAGTCGTTGAGCCTCTGCTGAGATGAGCTTTTTTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC---CTTTTTC
* * * *
7710275 AAGATGA-TTTTTAAAGTCGTTGAGCCTCTGCTGAAAGGAGCCCTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * * * *
7710323 AAGGTG-GATTTTTAAA-TTGTTAAGCTTCTGTTAAGAGGAG-CTTTTTC
1 AAGATGAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
** * * * * *
7710370 AA-AAAAGATTTTAAGGTTGTGGAGCCTCTACTGAGAGGAACCCTTTTC
1 AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
* * ** * * **
7710418 AAGATAAAAATTAGAAAGTTATTGAGCCTCTACTGAGAGGAGTTTTTTTC
1 AAGAT-GAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
7710468 A
1 A
7710469 GATTTTAAAT
Statistics
Matches: 661, Mismatches: 131, Indels: 56
0.78 0.15 0.07
Matches are distributed among these distances:
45 1 0.00
46 45 0.07
47 160 0.24
48 188 0.28
49 186 0.28
50 37 0.06
51 31 0.05
52 13 0.02
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (49 bp):
AAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC
Found at i:7709808 original size:144 final size:145
Alignment explanation
Indices: 7709600--7710459 Score: 864
Period size: 144 Copynumber: 5.9 Consensus size: 145
7709590 ATTTTGAAAA
* *
7709600 AAGATGAGATTTTAAAGTTATTGAGCCTCTGCTAAAAGGAG-CTTTTT--TAAGATGATTTTTAA
1 AAGATGA-ATTTTAAAGTTATTGAGCCTCTGCTAAGAGGAGCCTTTTTCAAAAGA-GA-TTTTAA
* ** * * *
7709662 AGTCGTTAAGCCTCTACTGAGATGAGCCTTTTTCAAGATGAGATTTTAAAATTGTTAAGCCTCTG
63 AGTTGTGGAGCCTCTGCTGAGATGAGCCTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCTG
*
7709727 CTGAGATGAGCCCTTTTC
128 CTGAGAGGAGCCCTTTTC
* * * *
7709745 AAGATGAATTTTTAAGTTATTGAGCCTCTGTTAAGAGGAG-TTTTTTCAAAAGAGCTTTTAAAGT
1 AAGATGAATTTTAAAGTTATTGAGCCTCTGCTAAGAGGAGCCTTTTTCAAAAGAGATTTTAAAGT
* * * *
7709809 TGTGAAGCCTCTGCTGAGAAGAATCC-TTTTCAAGATGAGATTTTAAAGTTGTTGAGTCTCTGCT
66 TGTGGAGCCTCTGCTGAGATG-AGCCTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCTGCT
7709873 GAGAGGAG-CC-TTTC
130 GAGAGGAGCCCTTTTC
* * * *
7709887 AAGATGACTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTCCAAAAGAGATTTTAAAGT
1 AAGATGAATTTTAAAGTTATTGAGCCTCTGCTAAGAGGAGCCTTTTTCAAAAGAGATTTTAAAGT
* * * * * *
7709951 AGTTGAGCCTCTGCTGAAATGAGCCTTTTTTAAGATGAGATTTTAAAGTTGTTGAGGCTCTACTG
66 TGTGGAGCCTCTGCTGAGATGAGCCTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTG
* * *
7710016 AGAGAAACCCTTTTG
131 AGAGGAGCCCTTTTC
* * * * **
7710031 AATATGGATTTTAAAATTGTTGAGCCTCTATTAAGAGGAG-CTTTTTCCAAAAGAGATTTTAAAG
1 AAGATGAATTTTAAAGTTATTGAGCCTCTGCTAAGAGGAGCCTTTTT-CAAAAGAGATTTTAAAG
* * * * * * *
7710095 TTATGGAGCCTCTGTTGAGAGGAACCCTTTCCAAGATGAGATTTTAAAATTGTTGAGCCTCTGCT
65 TTGTGGAGCCTCTGCTGAGATGAGCCTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCTGCT
* *
7710160 AAGAGGAG-CCTTTCC
130 GAGAGGAGCCCTTTTC
* * * * *
7710175 AAGATGATTTTTAAAGTCATTGAGCCTCTGCTAAAATGAGCCTTTTTCAAGATGAGATTTTAAAG
1 AAGATGAATTTTAAAGTTATTGAGCCTCTGCTAAGAGGAGCCTTTTTCAA-AAGAGATTTTAAAG
* * * * *
7710240 TCGTTGAGCCTCTGCTGAGATGAGCTTTTTTTTTCAAGATGA-TTTTTAAAGTCGTTGAGCCTCT
65 TTGTGGAGCCTCTGCTGAGATGAGC---CTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCT
*
7710304 GCTGAAAGGAGCCCTTTTC
127 GCTGAGAGGAGCCCTTTTC
* * * * * * * *
7710323 AAGGTGGATTTTTAAA-TTGTTAAGCTTCTGTTAAGAGGAG-CTTTTTCAAAAAAGATTTTAAGG
1 AAGAT-GAATTTTAAAGTTATTGAGCCTCTGCTAAGAGGAGCCTTTTTCAAAAGAGATTTTAAAG
* * * * * * ** * *
7710386 TTGTGGAGCCTCTACTGAGAGGAACCCTTTTCAAGATAAAAATTAGAAAGTTATTGAGCCTCTAC
65 TTGTGGAGCCTCTGCTGAGATGAGCCTTTTTCAAGAT-GAGATTTTAAAGTTGTTGAGCCTCTGC
7710451 TGAGAGGAG
129 TGAGAGGAG
7710460 TTTTTTTCAG
Statistics
Matches: 586, Mismatches: 113, Indels: 32
0.80 0.15 0.04
Matches are distributed among these distances:
141 3 0.01
142 117 0.20
143 14 0.02
144 183 0.31
145 149 0.25
146 35 0.06
147 37 0.06
148 38 0.06
149 10 0.02
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (145 bp):
AAGATGAATTTTAAAGTTATTGAGCCTCTGCTAAGAGGAGCCTTTTTCAAAAGAGATTTTAAAGT
TGTGGAGCCTCTGCTGAGATGAGCCTTTTTCAAGATGAGATTTTAAAGTTGTTGAGCCTCTGCTG
AGAGGAGCCCTTTTC
Found at i:7710736 original size:24 final size:25
Alignment explanation
Indices: 7710707--7710753 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
7710697 TATTATTATT
7710707 AAATACAAAATACAAAAA-AATATA
1 AAATACAAAATACAAAAATAATATA
*
7710731 AAATACGAAATACAAAAATAATA
1 AAATACAAAATACAAAAATAATA
7710754 GCAAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.72, C:0.09, G:0.02, T:0.17
Consensus pattern (25 bp):
AAATACAAAATACAAAAATAATATA
Found at i:7710760 original size:12 final size:11
Alignment explanation
Indices: 7710739--7710791 Score: 60
Period size: 12 Copynumber: 5.0 Consensus size: 11
7710729 TAAAATACGA
7710739 AATACAAAAAT
1 AATACAAAAAT
7710750 AATAGCAAAAAT
1 AATA-CAAAAAT
7710762 AATACAAAATAT
1 AATACAAAA-AT
7710774 AA-A-AAAAAT
1 AATACAAAAAT
7710783 -ATA-AAAAAT
1 AATACAAAAAT
7710792 TAGAACAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
8 1 0.03
9 9 0.23
10 4 0.10
11 10 0.26
12 15 0.38
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.19
Consensus pattern (11 bp):
AATACAAAAAT
Found at i:7710786 original size:23 final size:23
Alignment explanation
Indices: 7710739--7710791 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 23
7710729 TAAAATACGA
*
7710739 AATACAAAAATAATAGCAAAAAT
1 AATACAAAAATAATAGAAAAAAT
*
7710762 AATAC-AAAAT-ATAAAAAAAAT
1 AATACAAAAATAATAGAAAAAAT
7710783 -ATA-AAAAAT
1 AATACAAAAAT
7710792 TAGAACAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 8 0.30
21 9 0.33
22 5 0.19
23 5 0.19
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.19
Consensus pattern (23 bp):
AATACAAAAATAATAGAAAAAAT
Found at i:7710790 original size:30 final size:30
Alignment explanation
Indices: 7710732--7710791 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
7710722 AAAAATATAA
* * *
7710732 AATACGAAATACAAAAATAATAGCAAAAAT
1 AATACAAAATACAAAAAAAATAGAAAAAAT
* *
7710762 AATACAAAATATAAAAAAAATATAAAAAAT
1 AATACAAAATACAAAAAAAATAGAAAAAAT
7710792 TAGAACAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.72, C:0.07, G:0.03, T:0.18
Consensus pattern (30 bp):
AATACAAAATACAAAAAAAATAGAAAAAAT
Found at i:7710801 original size:21 final size:22
Alignment explanation
Indices: 7710755--7710802 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
7710745 AAAATAATAG
*
7710755 CAAAAATAATACAAAATATAAA
1 CAAAAATAATAAAAAATATAAA
7710777 -AAAAAT-ATAAAAAAT-TAGAA
1 CAAAAATAATAAAAAATATA-AA
7710797 CAAAAA
1 CAAAAA
7710803 AAAATCGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 2 0.09
20 10 0.43
21 11 0.48
ACGTcount: A:0.75, C:0.06, G:0.02, T:0.17
Consensus pattern (22 bp):
CAAAAATAATAAAAAATATAAA
Found at i:7711163 original size:18 final size:19
Alignment explanation
Indices: 7711140--7711184 Score: 74
Period size: 18 Copynumber: 2.4 Consensus size: 19
7711130 CACAAAGAAG
7711140 AAAAAAAAGTCAATTT-AA
1 AAAAAAAAGTCAATTTCAA
*
7711158 AAAAAAGAGTCAATTTCAA
1 AAAAAAAAGTCAATTTCAA
7711177 AAAAAAAA
1 AAAAAAAA
7711185 AAATTTCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (19 bp):
AAAAAAAAGTCAATTTCAA
Found at i:7719348 original size:205 final size:207
Alignment explanation
Indices: 7718940--7719348 Score: 777
Period size: 205 Copynumber: 2.0 Consensus size: 207
7718930 TGTAATCATA
7718940 AGCTTGATTGGTTGCTTTTGTTTTTGGATTTGTGGTGTTGCACTGCAGAATTGAAGAACCATTTT
1 AGCTTGATTGGTTGCTTTTGTTTTTGGATTTGTGGTGTTGCACTGCAGAATTGAAGAACCATTTT
7719005 GGATATTGTAGATCCAAAGTGGTGCAATTATCTTGCTGAAATTGTGAAAAAAAAAAGGGTCTTTG
66 GGATATTGTAGATCCAAAGTGGTGCAATTATCTTGCTGAAATTGTGAAAAAAAAAAGGGTCTTTG
7719070 TTTTAGCTTTGAAATGACTTTTCTCAACTATCATAGCTTTACCTGTCTTTAATCTTCTTAAAGCT
131 TTTTAGCTTTGAAATGACTTTTCTCAACTATCATAGCTTTACCTGTCTTTAATCTTCTTAAAGCT
7719135 CTCTGATGCGGT
196 CTCTGATGCGGT
* *
7719147 AGCTTGATTGGTTGCTTTT-TTTTTGGATTTGTGGTGTTGCATTGCAGAGTTGAAGAACCATTTT
1 AGCTTGATTGGTTGCTTTTGTTTTTGGATTTGTGGTGTTGCACTGCAGAATTGAAGAACCATTTT
*
7719211 GGATATTGTAGATCCAAAGTGGTGCAATTATCTTGCTGAAATTGTG-AAAAAAAATGGGTCTTTG
66 GGATATTGTAGATCCAAAGTGGTGCAATTATCTTGCTGAAATTGTGAAAAAAAAAAGGGTCTTTG
7719275 TTTTAGCTTTGAAATGACTTTTCTCAACTATCATAGCTTTACCTGTCTTTAATCTTCTTAAAGCT
131 TTTTAGCTTTGAAATGACTTTTCTCAACTATCATAGCTTTACCTGTCTTTAATCTTCTTAAAGCT
7719340 CTCTGATGC
196 CTCTGATGC
7719349 AGGGTTATTA
Statistics
Matches: 199, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
205 91 0.46
206 89 0.45
207 19 0.10
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.41
Consensus pattern (207 bp):
AGCTTGATTGGTTGCTTTTGTTTTTGGATTTGTGGTGTTGCACTGCAGAATTGAAGAACCATTTT
GGATATTGTAGATCCAAAGTGGTGCAATTATCTTGCTGAAATTGTGAAAAAAAAAAGGGTCTTTG
TTTTAGCTTTGAAATGACTTTTCTCAACTATCATAGCTTTACCTGTCTTTAATCTTCTTAAAGCT
CTCTGATGCGGT
Found at i:7721970 original size:100 final size:100
Alignment explanation
Indices: 7721792--7721992 Score: 316
Period size: 100 Copynumber: 2.0 Consensus size: 100
7721782 AGGAATAGTC
* * *
7721792 AGCAGTTCATCAAAAGATGACCCATGCTTTTCTATTTCTACCAATATATCGGGAAGATCAAGGTT
1 AGCAATTCATCAAAAGATGACCCACGCTTTTCTATTTCTACCAATATATCAGGAAGATCAAGGTT
7721857 CTGCAGTAAACACCATAGTTAGAGAAAGAAAAGAT
66 CTGCAGTAAACACCATAGTTAGAGAAAGAAAAGAT
* *
7721892 AGCAATTCATCAAAAGATGA-CCAGCGCTTTTCTGTTTCCT-CCAATATATTAGGAAGATCAAGG
1 AGCAATTCATCAAAAGATGACCCA-CGCTTTTCTATTT-CTACCAATATATCAGGAAGATCAAGG
*
7721955 TTCTGCAGTAAACACCATAGTTAGAGAAAGAAGAGAT
64 TTCTGCAGTAAACACCATAGTTAGAGAAAGAAAAGAT
7721992 A
1 A
7721993 ATGTGTGACA
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
99 3 0.03
100 88 0.95
101 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (100 bp):
AGCAATTCATCAAAAGATGACCCACGCTTTTCTATTTCTACCAATATATCAGGAAGATCAAGGTT
CTGCAGTAAACACCATAGTTAGAGAAAGAAAAGAT
Found at i:7722209 original size:41 final size:41
Alignment explanation
Indices: 7722152--7722240 Score: 169
Period size: 41 Copynumber: 2.2 Consensus size: 41
7722142 AAAAAAAAAA
*
7722152 CAACTCACGTGTATGTTATCTTCAACACATAAATCTCAAAC
1 CAACTCACGTGCATGTTATCTTCAACACATAAATCTCAAAC
7722193 CAACTCACGTGCATGTTATCTTCAACACATAAATCTCAAAC
1 CAACTCACGTGCATGTTATCTTCAACACATAAATCTCAAAC
7722234 CAACTCA
1 CAACTCA
7722241 ATTTCTATCG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (41 bp):
CAACTCACGTGCATGTTATCTTCAACACATAAATCTCAAAC
Found at i:7722771 original size:22 final size:22
Alignment explanation
Indices: 7722743--7722788 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
7722733 GTAAGACAAA
7722743 AAGAAAGAAAAAGAAAAACACC
1 AAGAAAGAAAAAGAAAAACACC
** *
7722765 AAGAAAGAGGAAGAAAAAGACC
1 AAGAAAGAAAAAGAAAAACACC
7722787 AA
1 AA
7722789 TAAAATATCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.70, C:0.11, G:0.20, T:0.00
Consensus pattern (22 bp):
AAGAAAGAAAAAGAAAAACACC
Found at i:7724571 original size:78 final size:78
Alignment explanation
Indices: 7724407--7724656 Score: 308
Period size: 81 Copynumber: 3.2 Consensus size: 78
7724397 GAAACTAAAC
* * *
7724407 TTAATAAAAAAAA-TCCAAAATTTAAGTACTTTCAGCTCAACCCAAGCAATACCCCAAAACCAAA
1 TTAAAAAAAAAAACT-CAAAATTTAAGCACTTTCAGCTCAAACCAAGCAATA-CCCAAAACCAAA
7724471 ACACTCCAAAAACCT
64 ACACTCCAAAAACCT
* * * *
7724486 TT-TAAAAAAAAACTCAAAATTTAAACACTTTCAGCTCAAACCAAGCAATACCCGACACCAAAAC
1 TTAAAAAAAAAAACTCAAAATTTAAGCACTTTCAGCTCAAACCAAGCAATACCCAAAACCAAAAC
*
7724550 ACTCCAAAAGA-GT
66 ACTCCAAAA-ACCT
* *
7724563 TTAAAAAAAAAAGAACCTCAAAATTTAAGCACTTTCAGCTTAAACCAAGCAATAACCAAAACCAA
1 TT-AAAAAAAAA-AA-CTCAAAATTTAAGCACTTTCAGCTCAAACCAAGCAATACCCAAAACCAA
*
7724628 AACACTCTAAAAACCT
63 AACACTCCAAAAACCT
**
7724644 GAAAAAAAAAAAA
1 TTAAAAAAAAAAA
7724657 AAAAAAAAAA
Statistics
Matches: 146, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
77 24 0.16
78 42 0.29
79 12 0.08
80 12 0.08
81 56 0.38
ACGTcount: A:0.53, C:0.24, G:0.05, T:0.18
Consensus pattern (78 bp):
TTAAAAAAAAAAACTCAAAATTTAAGCACTTTCAGCTCAAACCAAGCAATACCCAAAACCAAAAC
ACTCCAAAAACCT
Found at i:7724942 original size:3 final size:3
Alignment explanation
Indices: 7724934--7724959 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7724924 TGGACACGTG
7724934 AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AG
7724960 TAGAGTAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:7726101 original size:27 final size:27
Alignment explanation
Indices: 7726068--7726120 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
7726058 GTGAATAATG
* *
7726068 TATTATTATACACTCGAAAATCAAATT
1 TATTATTATACACTCAAAAATAAAATT
7726095 TATTATTATACACTCAAAAATAAAAT
1 TATTATTATACACTCAAAAATAAAAT
7726121 AGCTAACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (27 bp):
TATTATTATACACTCAAAAATAAAATT
Found at i:7726556 original size:35 final size:34
Alignment explanation
Indices: 7726499--7726565 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 34
7726489 TTTTACTCGG
*
7726499 TTTTTATATAACAAAATATTTAATTATTATTTATA
1 TTTTTATATAACAAAATATTTAAATATT-TTTATA
* *
7726534 TTTTTCTATAATAAGAAT-TTTAAATATTTTTA
1 TTTTTATATAACAA-AATATTTAAATATTTTTA
7726566 AAATATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
34 4 0.14
35 21 0.75
36 3 0.11
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.55
Consensus pattern (34 bp):
TTTTTATATAACAAAATATTTAAATATTTTTATA
Found at i:7730427 original size:13 final size:13
Alignment explanation
Indices: 7730393--7730417 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7730383 GCCAAAAAAA
7730393 AAAATCAAATTAG
1 AAAATCAAATTAG
7730406 AAAATCAAATTA
1 AAAATCAAATTA
7730418 AAATTACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.04, T:0.24
Consensus pattern (13 bp):
AAAATCAAATTAG
Found at i:7749452 original size:19 final size:19
Alignment explanation
Indices: 7749405--7749459 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
7749395 ATCATTCTGC
*
7749405 CAAAAAAAAAATCAAATTA
1 CAAAAAAAAAATAAAATTA
* ** *
7749424 GAAATCAAAATTAAAATTA
1 CAAAAAAAAAATAAAATTA
7749443 CAAAAAAAAAA-AAAATT
1 CAAAAAAAAAATAAAATT
7749460 GAGAGGAAAA
Statistics
Matches: 27, Mismatches: 9, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
18 6 0.22
19 21 0.78
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.18
Consensus pattern (19 bp):
CAAAAAAAAAATAAAATTA
Found at i:7772040 original size:114 final size:113
Alignment explanation
Indices: 7771830--7772059 Score: 406
Period size: 114 Copynumber: 2.0 Consensus size: 113
7771820 TTTTGCTCGA
*
7771830 CTGCTTCCCTTTAATCTCTTGCTACCTCTAATTTGCTGCACTGTATAAGATCAGACAGTTGTAGA
1 CTGCTTCCCTTTAATCTCTTGCTACCTCTAATTTGCTGCACTGCATAAGATCAGACAGTTGTAGA
*
7771895 GATTGATATTTCTTTGCTGCCCAAGACGCCATTGTAAGTTCCTAAATC
66 GATTGATATTTCTTTGCTGCCCAAGACGCCATCGTAAGTTCCTAAATC
*
7771943 CTGCTTCCCTCTTAATCTCTTGCTCCCTCTAATTTGCTGCACTGCATAAGATCAGACAGTTGTAG
1 CTGCTTCCCT-TTAATCTCTTGCTACCTCTAATTTGCTGCACTGCATAAGATCAGACAGTTGTAG
* *
7772008 AGATTGATCTTTCTTTGCTGTCCAAGACGCCATCGTAAGTTCCTAAATC
65 AGATTGATATTTCTTTGCTGCCCAAGACGCCATCGTAAGTTCCTAAATC
7772057 CTG
1 CTG
7772060 ATAACTTTTA
Statistics
Matches: 111, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
113 10 0.09
114 101 0.91
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.36
Consensus pattern (113 bp):
CTGCTTCCCTTTAATCTCTTGCTACCTCTAATTTGCTGCACTGCATAAGATCAGACAGTTGTAGA
GATTGATATTTCTTTGCTGCCCAAGACGCCATCGTAAGTTCCTAAATC
Found at i:7773214 original size:2 final size:2
Alignment explanation
Indices: 7773207--7773239 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7773197 CCGCCTGTTA
7773207 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7773240 AAGAGAGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7773850 original size:29 final size:29
Alignment explanation
Indices: 7773802--7773895 Score: 89
Period size: 33 Copynumber: 3.1 Consensus size: 29
7773792 TGACCACTAC
* *
7773802 TTTATTATTGTTTCATTATTTGAATATAAT
1 TTTATTTTTATTT-ATTATTTGAATATAAT
*
7773832 TTTATTTTTATTTATTATTTTAATATAAT
1 TTTATTTTTATTTATTATTTGAATATAAT
* * *
7773861 ATAATTATTTATTTTTTATTGTTTGGATATAAT
1 -T--TTATTT-TTATTTATTATTTGAATATAAT
7773894 TT
1 TT
7773896 GATCGCGTGT
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
29 15 0.28
30 13 0.25
32 7 0.13
33 18 0.34
ACGTcount: A:0.30, C:0.01, G:0.05, T:0.64
Consensus pattern (29 bp):
TTTATTTTTATTTATTATTTGAATATAAT
Found at i:7775649 original size:15 final size:17
Alignment explanation
Indices: 7775619--7775650 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
7775609 AAATACAAGA
7775619 GGTATAAGATTGAACAT
1 GGTATAAGATTGAACAT
7775636 GGTA-AAGA-TGAACAT
1 GGTATAAGATTGAACAT
7775651 AAATCAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (17 bp):
GGTATAAGATTGAACAT
Found at i:7776414 original size:57 final size:57
Alignment explanation
Indices: 7776300--7776415 Score: 135
Period size: 57 Copynumber: 2.0 Consensus size: 57
7776290 TGTCTTTTAA
* * * ** *
7776300 TTAGCTTGTTTTATGTTTTTTATGAACTTTTATATCCATTTGCCAACTTGGAGTGTC
1 TTAGCTTGTTTTATGTTTTGTATGAACTGTTATATCAATTTGCCAACTTAAAATGTC
* * *
7776357 TTAGCTTGTTTTATGTTTTGTATGAGCTGTTAGT-TTAATTTGTCAACTTAAAATGTC
1 TTAGCTTGTTTTATGTTTTGTATGAACTGTTA-TATCAATTTGCCAACTTAAAATGTC
7776414 TT
1 TT
7776416 TTATGTTTTG
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
57 48 0.98
58 1 0.02
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.52
Consensus pattern (57 bp):
TTAGCTTGTTTTATGTTTTGTATGAACTGTTATATCAATTTGCCAACTTAAAATGTC
Found at i:7777000 original size:24 final size:26
Alignment explanation
Indices: 7776953--7777003 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
7776943 TAAGAATGAA
*
7776953 TGTGTGAAATAACTAAGAAATAAAAT
1 TGTGTGAAACAACTAAGAAATAAAAT
*
7776979 TGTGTG-AACAACTAAG-AGTAAAAT
1 TGTGTGAAACAACTAAGAAATAAAAT
7777003 T
1 T
7777004 AAATATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.35
25 9 0.39
26 6 0.26
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.27
Consensus pattern (26 bp):
TGTGTGAAACAACTAAGAAATAAAAT
Found at i:7777172 original size:22 final size:22
Alignment explanation
Indices: 7777147--7777189 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7777137 TTTTTTGTCT
* *
7777147 TTAATTTTAGGGATACAAATAC
1 TTAATTTTAGAGAAACAAATAC
7777169 TTAATTTTAGAGAAACAAATA
1 TTAATTTTAGAGAAACAAATA
7777190 TAAATATACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.35
Consensus pattern (22 bp):
TTAATTTTAGAGAAACAAATAC
Found at i:7781213 original size:22 final size:22
Alignment explanation
Indices: 7781188--7781231 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7781178 ATTTTTTGTC
*
7781188 CTTAATTTTAGGGATACAAATA
1 CTTAATTTTAGAGATACAAATA
7781210 CTTAATTTTAGAGATACAAATA
1 CTTAATTTTAGAGATACAAATA
7781232 TAAATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (22 bp):
CTTAATTTTAGAGATACAAATA
Found at i:7781243 original size:22 final size:22
Alignment explanation
Indices: 7781191--7781243 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
7781181 TTTTGTCCTT
* * *
7781191 AATTTTAGGGATACAAATACTT
1 AATTATAGAGATACAAATACTA
*
7781213 AATTTTAGAGATACAAATA-TA
1 AATTATAGAGATACAAATACTA
7781234 AATATATAGA
1 AAT-TATAGA
7781244 TTACAAGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (22 bp):
AATTATAGAGATACAAATACTA
Found at i:7784264 original size:2 final size:2
Alignment explanation
Indices: 7784257--7784284 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7784247 CATGCACTCA
7784257 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7784285 ATCTAGATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7791463 original size:26 final size:26
Alignment explanation
Indices: 7791434--7791505 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 26
7791424 TTTTTATATA
*
7791434 TTATTAATAAATTAAATGATATTATT
1 TTATTAATAAATTAAATAATATTATT
7791460 TTATTAATAAAATAAATTAAATAATATTATT
1 TTA-T--T--AATAAATTAAATAATATTATT
*
7791491 TTATTAATGAATTAA
1 TTATTAATAAATTAA
7791506 TTTTTGATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
26 12 0.31
27 1 0.03
28 1 0.03
29 1 0.03
30 1 0.03
31 23 0.59
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (26 bp):
TTATTAATAAATTAAATAATATTATT
Found at i:7791476 original size:31 final size:31
Alignment explanation
Indices: 7791439--7791498 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
7791429 ATATATTATT
*
7791439 AATAAATTAAATGATATTATTTTATTAATAA
1 AATAAATTAAATAATATTATTTTATTAATAA
7791470 AATAAATTAAATAATATTATTTTATTAAT
1 AATAAATTAAATAATATTATTTTATTAAT
7791499 GAATTAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (31 bp):
AATAAATTAAATAATATTATTTTATTAATAA
Found at i:7791550 original size:22 final size:21
Alignment explanation
Indices: 7791503--7791547 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
7791493 ATTAATGAAT
*
7791503 TAATTTTTGATATCATATTAA
1 TAATTTTTGATATCATATAAA
7791524 TAATTTTTGTATAT-ATATAAA
1 TAATTTTTG-ATATCATATAAA
7791545 TAA
1 TAA
7791548 ATTAATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (21 bp):
TAATTTTTGATATCATATAAA
Found at i:7793525 original size:21 final size:21
Alignment explanation
Indices: 7793487--7793526 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7793477 TATAAAAAGA
* **
7793487 ATTTAAAAATTATTTTAATTT
1 ATTTAAAAAATAAATTAATTT
7793508 ATTTAAAAAATAAATTAAT
1 ATTTAAAAAATAAATTAAT
7793527 AATTATATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTTAAAAAATAAATTAATTT
Found at i:7794997 original size:9 final size:9
Alignment explanation
Indices: 7794976--7795004 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7794966 TAATGATTAA
7794976 AAAAAATAT
1 AAAAAATAT
7794985 -AAAAATAT
1 AAAAAATAT
7794993 AAAAAATAT
1 AAAAAATAT
7795002 AAA
1 AAA
7795005 TCTTTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AAAAAATAT
Done.