Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 39 of 125
Found at i:7798205 original size:19 final size:19
Alignment explanation
Indices: 7798168--7798205 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7798158 AAGAGTAAAA
*
7798168 AAGAGTGAAAGTGACAGAT
1 AAGAGTGAAAGCGACAGAT
*
7798187 AAGAGTGAAAGCGATAGAT
1 AAGAGTGAAAGCGACAGAT
7798206 GTTTGGTCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.05, G:0.32, T:0.16
Consensus pattern (19 bp):
AAGAGTGAAAGCGACAGAT
Found at i:7808653 original size:18 final size:19
Alignment explanation
Indices: 7808630--7808679 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
7808620 CATAATTTTG
7808630 TAATTTTGTAAATT-TTAA
1 TAATTTTGTAAATTATTAA
*
7808648 TAATTTTGTAAATTATTAC
1 TAATTTTGTAAATTATTAA
*
7808667 T-CTTTTGTAAATT
1 TAATTTTGTAAATT
7808680 GTATTTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 25 0.86
19 4 0.14
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.56
Consensus pattern (19 bp):
TAATTTTGTAAATTATTAA
Found at i:7808832 original size:26 final size:26
Alignment explanation
Indices: 7808803--7808879 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
7808793 TTAGATATTA
7808803 TTAATTTTTATGAAATTAAAAAAATT
1 TTAATTTTTATGAAATTAAAAAAATT
* * *
7808829 TTAATTTTAATGTATTTAATATTAAAATT
1 TTAATTTTTATGAAATTAA-A--AAAATT
* *
7808858 TGAATGTTTTATTAAATTAAAA
1 TTAAT-TTTTATGAAATTAAAA
7808880 TTTTATTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
26 16 0.41
27 2 0.05
29 11 0.28
30 10 0.26
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.49
Consensus pattern (26 bp):
TTAATTTTTATGAAATTAAAAAAATT
Found at i:7808863 original size:23 final size:23
Alignment explanation
Indices: 7808831--7808882 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
7808821 AAAAAATTTT
* *
7808831 AATTTTAATGTATTTA-ATATTAA
1 AATTTGAATGT-TTTATAAATTAA
7808854 AATTTGAATGTTTTATTAAATTAA
1 AATTTGAATGTTTTA-TAAATTAA
7808878 AATTT
1 AATTT
7808883 TATTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 4 0.16
23 10 0.40
24 11 0.44
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (23 bp):
AATTTGAATGTTTTATAAATTAA
Found at i:7808985 original size:6 final size:7
Alignment explanation
Indices: 7808959--7808988 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
7808949 TTAAAATATC
7808959 TAAAAATA
1 TAAAAA-A
7808967 TAAAAAA
1 TAAAAAA
7808974 TAAAAAA
1 TAAAAAA
7808981 TAAAAAA
1 TAAAAAA
7808988 T
1 T
7808989 CAAATTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.73
8 6 0.27
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAAAAA
Found at i:7815988 original size:2 final size:2
Alignment explanation
Indices: 7815981--7816026 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
7815971 ATTAACCTTT
7815981 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7816023 TA TA
1 TA TA
7816027 GCAAACAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7817697 original size:70 final size:68
Alignment explanation
Indices: 7817610--7817748 Score: 226
Period size: 70 Copynumber: 2.0 Consensus size: 68
7817600 ATTGTTCAAA
7817610 AAGTATTTAAATCGGTTCAA-TTGATCTAAATCTATGAATTAAAAGACAAAACTTTTATGGTTGT
1 AAGTATTTAAATCGGTTCAACTT-ATCTAAATCTATGAATTAAAAGACAAAA--TTTATGGTTGT
7817674 TTTATG
63 TTTATG
* *
7817680 AAGTGTTTAAATTGGTTCAACTTATCTAAATCTATGAATTAAAAGACAAAATTTATGGTTGTTTT
1 AAGTATTTAAATCGGTTCAACTTATCTAAATCTATGAATTAAAAGACAAAATTTATGGTTGTTTT
7817745 ATG
66 ATG
7817748 A
1 A
7817749 CATTGATTAT
Statistics
Matches: 66, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
68 18 0.27
70 46 0.70
71 2 0.03
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.40
Consensus pattern (68 bp):
AAGTATTTAAATCGGTTCAACTTATCTAAATCTATGAATTAAAAGACAAAATTTATGGTTGTTTT
ATG
Found at i:7819145 original size:21 final size:21
Alignment explanation
Indices: 7819112--7819375 Score: 72
Period size: 21 Copynumber: 12.7 Consensus size: 21
7819102 TTTAATACTA
* *
7819112 TTTTGATAAAATTTTGGTAAT
1 TTTTAATATAATTTTGGTAAT
** * *
7819133 TTTTAATATAATTTTCATGAC
1 TTTTAATATAATTTTGGTAAT
*
7819154 ATTTAATACT-ATTTTGGTAACT
1 TTTTAATA-TAATTTTGGTAA-T
** * * * *
7819176 TACT-ATATGACTTAGGTACT
1 TTTTAATATAATTTTGGTAAT
** *
7819196 CATTAATACAATTTTGGTAAT
1 TTTTAATATAATTTTGGTAAT
*
7819217 TTTTAATA-AATTTTTTGTAA-
1 TTTTAATATAA-TTTTGGTAAT
* * * **
7819237 GTTTGATATAATTTTGATGGT
1 TTTTAATATAATTTTGGTAAT
* * **
7819258 TTTTAATACAATTTTAGTAGC
1 TTTTAATATAATTTTGGTAAT
* * * *
7819279 TTATGATATAATTTTGATAAC
1 TTTTAATATAATTTTGGTAAT
** * * * *
7819300 CATTGATATAGTTTGGGTAAC
1 TTTTAATATAATTTTGGTAAT
* * * *
7819321 TTTGAATACAATTTTAGTAAG
1 TTTTAATATAATTTTGGTAAT
* *
7819342 TTTTGATATAA-TTTGATAAT
1 TTTTAATATAATTTTGGTAAT
7819362 CTTTT-ATATAATTT
1 -TTTTAATATAATTT
7819376 AATTTTGATA
Statistics
Matches: 167, Mismatches: 67, Indels: 18
0.66 0.27 0.07
Matches are distributed among these distances:
20 29 0.17
21 136 0.81
22 2 0.01
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.49
Consensus pattern (21 bp):
TTTTAATATAATTTTGGTAAT
Found at i:7819286 original size:42 final size:41
Alignment explanation
Indices: 7819216--7819296 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 41
7819206 ATTTTGGTAA
*
7819216 TTTTTAATAAATTTTTTGTAAGTTTGATATAATTTTGATGG
1 TTTTTAATAAATTTTTAGTAAGTTTGATATAATTTTGATGG
7819257 TTTTTAATACAA-TTTTAGT-AGCTTATGATATAATTTTGAT
1 TTTTTAATA-AATTTTTAGTAAG-TT-TGATATAATTTTGAT
7819297 AACCATTGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
40 2 0.06
41 17 0.47
42 17 0.47
ACGTcount: A:0.31, C:0.02, G:0.12, T:0.54
Consensus pattern (41 bp):
TTTTTAATAAATTTTTAGTAAGTTTGATATAATTTTGATGG
Found at i:7819308 original size:63 final size:62
Alignment explanation
Indices: 7819239--7819375 Score: 150
Period size: 63 Copynumber: 2.2 Consensus size: 62
7819229 TTTTGTAAGT
* *** *
7819239 TTGATATAATTTTGATGGTTTTTAATACAATTTTAGT-AGCTTATGATATAATTTTGATAACCA
1 TTGATATAATTTGGATAACTTTGAATACAATTTTAGTAAG-TTATGATATAA-TTTGATAACCA
* * * * *
7819302 TTGATATAGTTTGGGTAACTTTGAATACAATTTTAGTAAGTTTTGATATAATTTGATAATCT
1 TTGATATAATTTGGATAACTTTGAATACAATTTTAGTAAGTTATGATATAATTTGATAACCA
*
7819364 TTTATATAATTT
1 TTGATATAATTT
7819376 AATTTTGATA
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
62 19 0.31
63 40 0.66
64 2 0.03
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (62 bp):
TTGATATAATTTGGATAACTTTGAATACAATTTTAGTAAGTTATGATATAATTTGATAACCA
Found at i:7819486 original size:20 final size:20
Alignment explanation
Indices: 7819461--7819499 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7819451 TAGTACTATT
7819461 TTGATAACCATTGATATAAG
1 TTGATAACCATTGATATAAG
* *
7819481 TTGATAACCTTTTATATAA
1 TTGATAACCATTGATATAA
7819500 ATTTGATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (20 bp):
TTGATAACCATTGATATAAG
Found at i:7819591 original size:21 final size:21
Alignment explanation
Indices: 7819566--7819715 Score: 105
Period size: 21 Copynumber: 7.3 Consensus size: 21
7819556 TATTTCATAA
*
7819566 AATTTTAGCAACTTTTAATAT
1 AATTTTAGTAACTTTTAATAT
* * *
7819587 AATTTTGGTAACCTTTACTACT
1 AATTTTAGTAACTTTTAATA-T
* * *
7819609 -ATTTTGGTAACTTATGATAT
1 AATTTTAGTAACTTTTAATAT
* *
7819629 AA-TTAAGTAACATTT-ATAT
1 AATTTTAGTAACTTTTAATAT
* * *
7819648 AATTTTTGTAA-TTTTGGATAA
1 AATTTTAGTAACTTTT-AATAT
*
7819669 AATTTTAGTAA-GTTTAATAT
1 AATTTTAGTAACTTTTAATAT
*
7819689 AATTTTGGTAA-TTTTAGATAT
1 AATTTTAGTAACTTTTA-ATAT
7819710 AATTTT
1 AATTTT
7819716 GATTTTGATA
Statistics
Matches: 101, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
19 9 0.09
20 33 0.33
21 58 0.57
22 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.49
Consensus pattern (21 bp):
AATTTTAGTAACTTTTAATAT
Found at i:7819674 original size:20 final size:20
Alignment explanation
Indices: 7819609--7819715 Score: 83
Period size: 20 Copynumber: 5.2 Consensus size: 20
7819599 CTTTACTACT
* *
7819609 ATTTTGGTAACTTATGATATA
1 ATTTTAGTAA-TTTTGATATA
* *
7819630 A-TTAAGTAACATTT-ATATA
1 ATTTTAGTAA-TTTTGATATA
* *
7819649 ATTTTTGTAATTTTGGATAAA
1 ATTTTAGTAATTTT-GATATA
* *
7819670 ATTTTAGTAAGTTTAATATA
1 ATTTTAGTAATTTTGATATA
*
7819690 ATTTTGGTAATTTTAGATATA
1 ATTTTAGTAATTTT-GATATA
7819711 ATTTT
1 ATTTT
7819716 GATTTTGATA
Statistics
Matches: 67, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
19 9 0.13
20 31 0.46
21 27 0.40
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.50
Consensus pattern (20 bp):
ATTTTAGTAATTTTGATATA
Found at i:7819714 original size:41 final size:42
Alignment explanation
Indices: 7819578--7819715 Score: 135
Period size: 41 Copynumber: 3.4 Consensus size: 42
7819568 TTTTAGCAAC
* * *
7819578 TTTTA-ATATAATTTTGGTAACCTTTACTACT-ATTTTGGTAA
1 TTTTAGATATAATTTTAGTAACATTTAATA-TAATTTTGGTAA
* * *
7819619 -CTTATGATATAA-TTAAGTAACATTT-ATATAATTTTTGTAA
1 TTTTA-GATATAATTTTAGTAACATTTAATATAATTTTGGTAA
* * *
7819659 TTTTGGATAAAATTTTAGTAA-GTTTAATATAATTTTGGTAA
1 TTTTAGATATAATTTTAGTAACATTTAATATAATTTTGGTAA
7819700 TTTTAGATATAATTTT
1 TTTTAGATATAATTTT
7819716 GATTTTGATA
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
39 1 0.01
40 23 0.30
41 47 0.61
42 6 0.08
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (42 bp):
TTTTAGATATAATTTTAGTAACATTTAATATAATTTTGGTAA
Found at i:7825210 original size:9 final size:9
Alignment explanation
Indices: 7825198--7825225 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
7825188 GCAAGAGTAA
7825198 AAAGATAAG
1 AAAGATAAG
7825207 AAAGATAAG
1 AAAGATAAG
7825216 AAAGATAAG
1 AAAGATAAG
7825225 A
1 A
7825226 GTTAAGATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.11
Consensus pattern (9 bp):
AAAGATAAG
Found at i:7838168 original size:20 final size:20
Alignment explanation
Indices: 7838143--7838180 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7838133 GTTATATTAT
7838143 TTTTAATAAATTTTTACTTA
1 TTTTAATAAATTTTTACTTA
*
7838163 TTTTAATATATTTTTACT
1 TTTTAATAAATTTTTACT
7838181 GGATTAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTAATAAATTTTTACTTA
Found at i:7838493 original size:19 final size:19
Alignment explanation
Indices: 7838469--7838505 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7838459 GGTTTGTCTT
7838469 GTTAAATTTAT-ATTTTTGG
1 GTTAAATTT-TGATTTTTGG
7838488 GTTAAATTTTGATTTTTG
1 GTTAAATTTTGATTTTTG
7838506 AATATTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.59
Consensus pattern (19 bp):
GTTAAATTTTGATTTTTGG
Found at i:7841725 original size:21 final size:22
Alignment explanation
Indices: 7841701--7841761 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 22
7841691 TTGATTGTGT
7841701 TATATATAATTTATAAT-TTTG
1 TATATATAATTTATAATATTTG
* * *
7841722 TATAT-GAATTTTTAATATTTT
1 TATATATAATTTATAATATTTG
* *
7841743 TTTATAT-ATTTATATTATT
1 TATATATAATTTATAATATT
7841762 GTCAGTTCTT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
20 9 0.29
21 22 0.71
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (22 bp):
TATATATAATTTATAATATTTG
Found at i:7842365 original size:433 final size:423
Alignment explanation
Indices: 7841562--7842388 Score: 1385
Period size: 433 Copynumber: 1.9 Consensus size: 423
7841552 TAATTAGTGG
7841562 TTTTGAAAATTTATAATTAAAAAAAAGAGATTAATAATTTAATATATATATAGAGATTTTAAATG
1 TTTTGAAAATTTATAATTAAAAAAAAGAGATTAATAATTTAATATATATATAGAGATTTTAAATG
*
7841627 AAAAATTTTTGATAAATTTTTTGTATAGTTAGATGAAAAAATAATTAAAATTAAATATTATATTT
66 AAAAATTTTTAATAAATTTTTTGTATAGTTAGATGAAAAAATAATTAAAATTAAATATTATATTT
*
7841692 TGATTGTGTTATATATAATTTATAATTTTGTATATGAATTTTTAATATTTTTTTATATATTTATA
131 TGATTGTGTTATATATAATTTATAATTTTATATATGAATTTTTAATATTTTTTTATATATTTATA
*
7841757 TTATTGTCAGTTCTTTTGATATTAGATTAATTCTTGTTATTTTTATGTAATTATTGAAGATTGTG
196 TTATTGTCAATTCTTTTGATATTAGATTAATTCTTGTTATTTTTATGTAATTATTGAAGATTGTG
* * *
7841822 TTTATTATATTAATTATTAAAAGTTGTTTGTGATAAAAAAATTTATATCAATTAGTTTATTTAAA
261 TTTATTATATTAATTATTAAAAGTTGTTTGTAATAAAAAAATTTATATCAATTAGTGTATTCAAA
7841887 AAAATTAAGATACTTAATAAATTTAGCATTTATGATCTATTACTCTTATTAAGATTAAAAACTAA
326 AAAATTAAGATACTTAATAAATTTAGCATTTATGATCTATTACTCTTATTAAGATTAAAAACTAA
7841952 AAAAATAATATATAGAGATTTTAAATGAAAAAT
391 AAAAATAATATATAGAGATTTTAAATGAAAAAT
7841985 TTTTGATAAATTTATAATTAAAAAAAAGAGATTAATAATTTAATATAATATATAGAGATTTTAAA
1 TTTTGA-AAATTTATAATTAAAAAAAAGAGATTAATAATTTAATAT-ATATATAGAGATTTTAAA
7842050 TGAAAAA-TTTTAATAAATTTTTTTTGTATAAGTTAGATG-AAAAATAATTAAAATTAAATATTA
64 TGAAAAATTTTTAATAAA--TTTTTTGTAT-AGTTAGATGAAAAAATAATTAAAATTAAATATTA
*
7842113 TATTTTGATTGTGTTATATATTAATTTATAATTTTATATCTGAA-TTTTAATATTTTTTTTTTGT
126 TATTTTGATTGTGTTATATA-TAATTTATAATTTTATATATGAATTTTTAATA-----TTTTT-T
* *
7842177 TTTGATATTTATATTATTGTCAATTCTTTTGATATTAGATTAATTCTTGTTATTTTTGTGTAATT
184 TAT-ATATTTATATTATTGTCAATTCTTTTGATATTAGATTAATTCTTGTTATTTTTATGTAATT
*
7842242 ATTGAAGATTGTGTTTATTATA-TAATTATTAAAAGTTGTTTGTAATAAAAAAAATTTGTATCAA
248 ATTGAAGATTGTGTTTATTATATTAATTATTAAAAGTTGTTTGTAAT-AAAAAAATTTATATCAA
*
7842306 TTAGTGTA-TCAAAAAAATTAAGTTACTTAATAAATTTAGCATTTTATGATCTATTACTCTTATT
312 TTAGTGTATTCAAAAAAATTAAGATACTTAATAAATTTAGCA-TTTATGATCTATTACTCTTATT
7842370 AAGATTAAAAACTAAAAAA
376 AAGATTAAAAACTAAAAAA
7842389 TAAAAAATAT
Statistics
Matches: 378, Mismatches: 11, Indels: 20
0.92 0.03 0.05
Matches are distributed among these distances:
423 6 0.02
424 48 0.13
425 25 0.07
426 62 0.16
427 30 0.08
431 5 0.01
432 57 0.15
433 145 0.38
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (423 bp):
TTTTGAAAATTTATAATTAAAAAAAAGAGATTAATAATTTAATATATATATAGAGATTTTAAATG
AAAAATTTTTAATAAATTTTTTGTATAGTTAGATGAAAAAATAATTAAAATTAAATATTATATTT
TGATTGTGTTATATATAATTTATAATTTTATATATGAATTTTTAATATTTTTTTATATATTTATA
TTATTGTCAATTCTTTTGATATTAGATTAATTCTTGTTATTTTTATGTAATTATTGAAGATTGTG
TTTATTATATTAATTATTAAAAGTTGTTTGTAATAAAAAAATTTATATCAATTAGTGTATTCAAA
AAAATTAAGATACTTAATAAATTTAGCATTTATGATCTATTACTCTTATTAAGATTAAAAACTAA
AAAAATAATATATAGAGATTTTAAATGAAAAAT
Found at i:7842420 original size:26 final size:26
Alignment explanation
Indices: 7842392--7842440 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
7842382 TAAAAAATAA
*
7842392 AAAATATAGGTTTGAAAA-TTTTATT
1 AAAATATAAGTTTGAAAACTTTTATT
7842417 AAAATATAAGTTTGAAAACTTTTA
1 AAAATATAAGTTTGAAAACTTTTA
7842441 ATTTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41
Consensus pattern (26 bp):
AAAATATAAGTTTGAAAACTTTTATT
Found at i:7844013 original size:18 final size:18
Alignment explanation
Indices: 7843992--7844052 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
7843982 TATCAATTAT
7843992 CACAAATGTACCCTCCAC
1 CACAAATGTACCCTCCAC
7844010 CACAAATGTA---T-CATC
1 CACAAATGTACCCTCCA-C
* *
7844025 CTCAAATATACCCTCCAC
1 CACAAATGTACCCTCCAC
*
7844043 CTCAAATGTA
1 CACAAATGTA
7844053 TCAAGAACAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 2 0.06
15 10 0.29
18 21 0.60
19 2 0.06
ACGTcount: A:0.36, C:0.36, G:0.05, T:0.23
Consensus pattern (18 bp):
CACAAATGTACCCTCCAC
Found at i:7844443 original size:6 final size:6
Alignment explanation
Indices: 7844432--7844459 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7844422 ATAATAGTTT
7844432 TTATAA TTATAA TTATAA TTATAA TTAT
1 TTATAA TTATAA TTATAA TTATAA TTAT
7844460 TACATTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTATAA
Found at i:7845942 original size:30 final size:29
Alignment explanation
Indices: 7845906--7845962 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
7845896 TATTTTCGGA
7845906 GCTTATTTGAATACAAATTAAAGATTAAAG
1 GCTTATTTGAATAC-AATTAAAGATTAAAG
* * *
7845936 GCTTATTTTAGTGCAATTAAAGATTAA
1 GCTTATTTGAATACAATTAAAGATTAA
7845963 GGGAATGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.42, C:0.07, G:0.14, T:0.37
Consensus pattern (29 bp):
GCTTATTTGAATACAATTAAAGATTAAAG
Found at i:7846428 original size:3 final size:3
Alignment explanation
Indices: 7846420--7846472 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
7846410 ACCTTCCAGT
7846420 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7846468 TTA TT
1 TTA TT
7846473 TTGTAGATAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7851685 original size:19 final size:19
Alignment explanation
Indices: 7851647--7851683 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7851637 TCATAATCAA
*
7851647 ATTTTATTTATTCAATTTT
1 ATTTGATTTATTCAATTTT
7851666 ATTTGATTTATT-AATTTT
1 ATTTGATTTATTCAATTTT
7851684 TAAAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.68
Consensus pattern (19 bp):
ATTTGATTTATTCAATTTT
Found at i:7851735 original size:21 final size:23
Alignment explanation
Indices: 7851695--7851747 Score: 74
Period size: 21 Copynumber: 2.4 Consensus size: 23
7851685 AAAATTTAAT
*
7851695 TTTTATATATTATTTTAATAAAA
1 TTTTATATATTATTTAAATAAAA
7851718 TTTT-TATA-TATTTAAATAAAA
1 TTTTATATATTATTTAAATAAAA
*
7851739 TTATATATA
1 TTTTATATA
7851748 AATAATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 15 0.56
22 8 0.30
23 4 0.15
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TTTTATATATTATTTAAATAAAA
Found at i:7856266 original size:18 final size:17
Alignment explanation
Indices: 7856243--7856276 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7856233 CAGCCGTATT
7856243 ATAAGAGACAAAAGATTG
1 ATAAGA-ACAAAAGATTG
*
7856261 ATAAGAATAAAAGATT
1 ATAAGAACAAAAGATT
7856277 CTCCCAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.59, C:0.03, G:0.18, T:0.21
Consensus pattern (17 bp):
ATAAGAACAAAAGATTG
Found at i:7857884 original size:55 final size:56
Alignment explanation
Indices: 7857787--7857897 Score: 131
Period size: 56 Copynumber: 2.0 Consensus size: 56
7857777 TATTTTGATA
* *
7857787 TTATTTTAATAAAATTTTAAATAGATATAAATAGATCTAAAATAAAATAATT-ATTT
1 TTATTTTAATAAAATTTTAAATAGATAAAAATAGATCAAAAAT-AAATAATTCATTT
* *
7857843 TTATTTT-ATAAAATTTTAAAATATATAAAAATTA-AT-AAAAATTAATAATTCATTT
1 TTATTTTAATAAAATTTT-AAATAGATAAAAA-TAGATCAAAAATAAATAATTCATTT
7857898 AGATATTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
54 7 0.15
55 19 0.40
56 20 0.42
57 2 0.04
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (56 bp):
TTATTTTAATAAAATTTTAAATAGATAAAAATAGATCAAAAATAAATAATTCATTT
Found at i:7860836 original size:18 final size:18
Alignment explanation
Indices: 7860798--7860835 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7860788 ATTTGAAAAC
7860798 TTTATTTGTAAAGATTTT
1 TTTATTTGTAAAGATTTT
7860816 TTTATTTG--AAGAGTTTT
1 TTTATTTGTAAAGA-TTTT
7860833 TTT
1 TTT
7860836 TTATAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.21
17 7 0.37
18 8 0.42
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.63
Consensus pattern (18 bp):
TTTATTTGTAAAGATTTT
Found at i:7860909 original size:13 final size:13
Alignment explanation
Indices: 7860899--7860952 Score: 56
Period size: 13 Copynumber: 3.9 Consensus size: 13
7860889 AAATAAAACG
7860899 AAAAAAAAAAATC
1 AAAAAAAAAAATC
*
7860912 AAAAAATAAAAT-
1 AAAAAAAAAAATC
7860924 AAGATAAAATAAAATC
1 AA-A-AAAA-AAAATC
7860940 AAAAAATAAAAAT
1 AAAAAA-AAAAAT
7860953 AAATGAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
12 2 0.06
13 12 0.35
14 11 0.32
15 7 0.21
16 2 0.06
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.15
Consensus pattern (13 bp):
AAAAAAAAAAATC
Found at i:7860910 original size:18 final size:19
Alignment explanation
Indices: 7860887--7860969 Score: 55
Period size: 19 Copynumber: 4.2 Consensus size: 19
7860877 ATAAAATAGC
7860887 AAAAATAAAACGAAAAAA-
1 AAAAATAAAACGAAAAAAG
**
7860905 AAAAATCAAAAAATAAAATAAG
1 AAAAAT--AAAACGAAAA-AAG
*
7860927 ATAAAATAAAATC-AAAAAAT
1 A-AAAATAAAA-CGAAAAAAG
*
7860947 AAAAAT-AAATGAAAAAAAG
1 AAAAATAAAACG-AAAAAAG
7860966 AAAA
1 AAAA
7860970 TTTGCAATCA
Statistics
Matches: 51, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
18 9 0.18
19 15 0.29
20 11 0.22
21 10 0.20
22 1 0.02
23 5 0.10
ACGTcount: A:0.80, C:0.04, G:0.05, T:0.12
Consensus pattern (19 bp):
AAAAATAAAACGAAAAAAG
Found at i:7860915 original size:10 final size:9
Alignment explanation
Indices: 7860887--7860969 Score: 55
Period size: 10 Copynumber: 9.1 Consensus size: 9
7860877 ATAAAATAGC
7860887 AAAAATAAA
1 AAAAATAAA
*
7860896 ACGAAA-AAA
1 A-AAAATAAA
*
7860905 AAAAAT-CA
1 AAAAATAAA
7860913 AAAAATAAA
1 AAAAATAAA
*
7860922 ATAAGATAAA
1 A-AAAATAAA
*
7860932 ATAAAAT-CA
1 A-AAAATAAA
7860941 AAAAATAAA
1 AAAAATAAA
*
7860950 AATAAATGAA
1 AA-AAATAAA
*
7860960 AAAAAGAAA
1 AAAAATAAA
7860969 A
1 A
7860970 TTTGCAATCA
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
8 15 0.26
9 18 0.32
10 24 0.42
ACGTcount: A:0.80, C:0.04, G:0.05, T:0.12
Consensus pattern (9 bp):
AAAAATAAA
Found at i:7860945 original size:41 final size:41
Alignment explanation
Indices: 7860875--7860952 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 41
7860865 TTATTTTCAG
7860875 AAATAAAATAGCAAAAATAAAACGAAAAAA-AAAAATCAAA
1 AAATAAAATAGCAAAAATAAAACGAAAAAATAAAAATCAAA
7860915 AAATAAAATAAG-ATAAAATAAAATC-AAAAAATAAAAAT
1 AAATAAAAT-AGCA-AAAATAAAA-CGAAAAAATAAAAAT
7860953 AAATGAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
40 10 0.29
41 17 0.50
42 7 0.21
ACGTcount: A:0.77, C:0.05, G:0.04, T:0.14
Consensus pattern (41 bp):
AAATAAAATAGCAAAAATAAAACGAAAAAATAAAAATCAAA
Found at i:7862314 original size:115 final size:114
Alignment explanation
Indices: 7862092--7862459 Score: 332
Period size: 115 Copynumber: 3.2 Consensus size: 114
7862082 GGTCAAAGAT
* * *
7862092 AAATGATCGAGACAAAATCACAAATCATAAAAAATGATCTAGACTGAATCAAGATCAGGTGATTG
1 AAATGATCGAGACAAAATCACGAATCATAAGAAATGATCTAGACTGAATCAAGATCAAGTGATTG
* * * * * **
7862157 AGATGAAATCACAAGTTAAAATGAAGTGACCAAGATCCAGTCGATG-TCGA
66 AGATGAAACCACAAGTCAAAAT-AAATAACCAAAATCCAGTCGA-GATAAA
* * * * *
7862207 AAATGATC-ATGACAAAACCACGGATCATAAGAAATTATCTAGGCTGAATCAATATCAAGTGATT
1 AAATGATCGA-GACAAAATCACGAATCATAAGAAATGATCTAGACTGAATCAAGATCAAGTGATT
* * **
7862271 GAGATGAAACCACATGTCAAAATAAATCAACTAAAATTGAGTCGAGATAAA
65 GAGATGAAACCACAAGTCAAAATAAAT-AACCAAAATCCAGTCGAGATAAA
* * * * ** *
7862322 AAATGA-CTAGGACGAAATCACGAATTATAAGAAATGATTTAGACTGAGCCAAGATCAAGTGACT
1 AAATGATCGA-GACAAAATCACGAATCATAAGAAATGATCTAGACTGAATCAAGATCAAGTGATT
* * * * *
7862386 -AGGATGAAACCATAAGTCAAAATAAAGTGACCAAAAGT-GAGTCAAGGTAAA
65 GA-GATGAAACCACAAGTCAAAATAAA-TAACCAAAA-TCCAGTCGAGATAAA
* *
7862437 AAATGATTGGGACAAAATCACGA
1 AAATGATCGAGACAAAATCACGA
7862460 GTCAAAATAA
Statistics
Matches: 204, Mismatches: 41, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
114 7 0.03
115 195 0.96
116 2 0.01
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (114 bp):
AAATGATCGAGACAAAATCACGAATCATAAGAAATGATCTAGACTGAATCAAGATCAAGTGATTG
AGATGAAACCACAAGTCAAAATAAATAACCAAAATCCAGTCGAGATAAA
Found at i:7874016 original size:20 final size:22
Alignment explanation
Indices: 7873968--7874013 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
7873958 TTTGTAGGGA
7873968 TTTTTAT-TTGAAAAAGATTTT
1 TTTTTATATTGAAAAAGATTTT
*
7873989 TTTTTATATT-AAAAGGATTTT
1 TTTTTATATTGAAAAAGATTTT
7874010 TTTT
1 TTTT
7874014 ATAAATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (22 bp):
TTTTTATATTGAAAAAGATTTT
Found at i:7874197 original size:13 final size:13
Alignment explanation
Indices: 7874181--7874222 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
7874171 GAGATAAAAT
*
7874181 AAAATCAAATTAA
1 AAAATAAAATTAA
*
7874194 AAAATAAAAAT-A
1 AAAATAAAATTAA
*
7874206 AAAATAAAATGAA
1 AAAATAAAATTAA
7874219 AAAA
1 AAAA
7874223 AACCTGCGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (13 bp):
AAAATAAAATTAA
Found at i:7875080 original size:3 final size:3
Alignment explanation
Indices: 7875065--7875100 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
7875055 GAAAGAAAAA
7875065 AAT AAT GAA- AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7875101 GATGATGATG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.87
4 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7882565 original size:18 final size:18
Alignment explanation
Indices: 7882525--7882571 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7882515 ACTTTTGTGG
* *
7882525 AGCTTAAGAGCACAGAAT
1 AGCTTAAGAGCACAAAAC
* *
7882543 GGCTTAAGAGCCCAAAAC
1 AGCTTAAGAGCACAAAAC
7882561 AGCTTAAGAGC
1 AGCTTAAGAGC
7882572 TTAAAGTGGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.15
Consensus pattern (18 bp):
AGCTTAAGAGCACAAAAC
Found at i:7895684 original size:20 final size:21
Alignment explanation
Indices: 7895659--7895704 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
7895649 CTAATATTCG
7895659 CTAAATCAATATCAAATCAA-
1 CTAAATCAATATCAAATCAAT
*
7895679 CTAAATCGATATCAAATCAAT
1 CTAAATCAATATCAAATCAAT
7895700 CTAAA
1 CTAAA
7895705 ATATTATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.52, C:0.20, G:0.02, T:0.26
Consensus pattern (21 bp):
CTAAATCAATATCAAATCAAT
Found at i:7905554 original size:25 final size:27
Alignment explanation
Indices: 7905526--7905576 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7905516 TTTAATTAAC
*
7905526 GATCAAGG-CAAAAT-TAAAAAAAAAT
1 GATCAAGGAAAAAATATAAAAAAAAAT
7905551 GATCAAGGAAAAAATATAAAAAAAAA
1 GATCAAGGAAAAAATATAAAAAAAAA
7905577 AAATTTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 8 0.35
26 5 0.22
27 10 0.43
ACGTcount: A:0.69, C:0.06, G:0.12, T:0.14
Consensus pattern (27 bp):
GATCAAGGAAAAAATATAAAAAAAAAT
Found at i:7905571 original size:26 final size:25
Alignment explanation
Indices: 7905526--7905575 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
7905516 TTTAATTAAC
* *
7905526 GATCAAGGCAAAATTAAAAAAAAAT
1 GATCAAGGAAAAAATAAAAAAAAAT
7905551 GATCAAGGAAAAAATATAAAAAAAA
1 GATCAAGGAAAAAATA-AAAAAAAA
7905576 AAAATTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.68, C:0.06, G:0.12, T:0.14
Consensus pattern (25 bp):
GATCAAGGAAAAAATAAAAAAAAAT
Found at i:7907106 original size:28 final size:29
Alignment explanation
Indices: 7907074--7907131 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
7907064 ATATCATAAA
7907074 TTATT-TTAAAAATTATAAGTACTA-ATTT
1 TTATTATT-AAAATTATAAGTACTACATTT
* *
7907102 TTATTATTATAATTATAATTACTACATTT
1 TTATTATTAAAATTATAAGTACTACATTT
7907131 T
1 T
7907132 ATAATAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (29 bp):
TTATTATTAAAATTATAAGTACTACATTT
Found at i:7920388 original size:34 final size:34
Alignment explanation
Indices: 7920345--7920411 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
7920335 TTGGGTCAAA
*
7920345 ATTTGCTTTCAATGTTGTCTTTATATAACAACAT
1 ATTTGCTTTCAATATTGTCTTTATATAACAACAT
7920379 ATTTGCTTTCAATATTGTCTTTATATAACAACA
1 ATTTGCTTTCAATATTGTCTTTATATAACAACA
7920412 ACTAGCACCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.31, C:0.15, G:0.07, T:0.46
Consensus pattern (34 bp):
ATTTGCTTTCAATATTGTCTTTATATAACAACAT
Found at i:7923611 original size:32 final size:32
Alignment explanation
Indices: 7923565--7923626 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
7923555 CAGGGGTAAA
*
7923565 GCGAAAGGAAATGTTTTATGGCCTAGTGGTAG
1 GCGAAAGGAAATGTTTTATAGCCTAGTGGTAG
*
7923597 GCGAGAGGAAATGTTTTATAGCCTAGTGGT
1 GCGAAAGGAAATGTTTTATAGCCTAGTGGT
7923627 CGGGGGATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.27, C:0.10, G:0.34, T:0.29
Consensus pattern (32 bp):
GCGAAAGGAAATGTTTTATAGCCTAGTGGTAG
Found at i:7924697 original size:16 final size:16
Alignment explanation
Indices: 7924676--7924708 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7924666 AGCAGCTGAT
7924676 GAATCTCCTGTGGAGA
1 GAATCTCCTGTGGAGA
7924692 GAATCTCCTGTGGAGA
1 GAATCTCCTGTGGAGA
7924708 G
1 G
7924709 TAGTTGGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.24
Consensus pattern (16 bp):
GAATCTCCTGTGGAGA
Found at i:7924933 original size:2 final size:2
Alignment explanation
Indices: 7924926--7924950 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7924916 ACATTTATTA
7924926 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7924951 GAAATTCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7925401 original size:17 final size:18
Alignment explanation
Indices: 7925381--7925421 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
7925371 ATTTTTATCT
*
7925381 TATAAAAA-ATTAAAATA
1 TATAAAAATAATAAAATA
7925398 TATAAAAATTAATAAAATA
1 TATAAAAA-TAATAAAATA
7925417 TATAA
1 TATAA
7925422 TTCGATTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
19 13 0.62
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TATAAAAATAATAAAATA
Found at i:7925899 original size:17 final size:17
Alignment explanation
Indices: 7925874--7925912 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
7925864 AGAAATCTTC
*
7925874 ATTTTAATTTTAATTTG
1 ATTTAAATTTTAATTTG
* *
7925891 ATTTAAATTTTAGTTTT
1 ATTTAAATTTTAATTTG
7925908 ATTTA
1 ATTTA
7925913 TTTATTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (17 bp):
ATTTAAATTTTAATTTG
Found at i:7927117 original size:15 final size:15
Alignment explanation
Indices: 7927080--7927119 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
7927070 TCCTTACATA
* *
7927080 TATTATTTTTATATT
1 TATTATTTTAATATC
7927095 TA-TATTTTAATATC
1 TATTATTTTAATATC
7927109 TATTATTTTAA
1 TATTATTTTAA
7927120 ATCGATGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTATTTTAATATC
Found at i:7930672 original size:20 final size:20
Alignment explanation
Indices: 7930647--7930684 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7930637 TTTCTAGGTT
7930647 CATTTGAAGATTCCAACAAC
1 CATTTGAAGATTCCAACAAC
7930667 CATTTGAAGATTCCAACA
1 CATTTGAAGATTCCAACA
7930685 CCAAAATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (20 bp):
CATTTGAAGATTCCAACAAC
Found at i:7932750 original size:39 final size:39
Alignment explanation
Indices: 7932696--7932775 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
7932686 ACATATAATT
7932696 CCATTCCTTTTTTATTATTGTTTAATCATTTATTAAGAA
1 CCATTCCTTTTTTATTATTGTTTAATCATTTATTAAGAA
7932735 CCATTCCTTTTTTATTATTGTTTAATCATTTATTAAGAA
1 CCATTCCTTTTTTATTATTGTTTAATCATTTATTAAGAA
7932774 CC
1 CC
7932776 TTAATCAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.53
Consensus pattern (39 bp):
CCATTCCTTTTTTATTATTGTTTAATCATTTATTAAGAA
Found at i:7932789 original size:39 final size:39
Alignment explanation
Indices: 7932707--7932790 Score: 107
Period size: 39 Copynumber: 2.2 Consensus size: 39
7932697 CATTCCTTTT
** ***
7932707 TTATTATTGTTTAATCATTTATTAAGAACCATTCCTTTT
1 TTATTATTGTTTAATCATTTATTAAGAACCATTAATAAA
7932746 TTATTATTGTTTAATCATTTATTAAGAACC-TTAATCAAA
1 TTATTATTGTTTAATCATTTATTAAGAACCATTAAT-AAA
7932785 TTATTA
1 TTATTA
7932791 AAAAGAACAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 3 0.08
39 36 0.92
ACGTcount: A:0.33, C:0.11, G:0.05, T:0.51
Consensus pattern (39 bp):
TTATTATTGTTTAATCATTTATTAAGAACCATTAATAAA
Found at i:7938873 original size:14 final size:14
Alignment explanation
Indices: 7938854--7938886 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7938844 CAAGCAAGAT
*
7938854 AAGTTAAAGATAAC
1 AAGTTAAAAATAAC
7938868 AAGTTAAAAATAAC
1 AAGTTAAAAATAAC
7938882 AAGTT
1 AAGTT
7938887 TAATTGATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.24
Consensus pattern (14 bp):
AAGTTAAAAATAAC
Found at i:7939649 original size:60 final size:59
Alignment explanation
Indices: 7939531--7939824 Score: 287
Period size: 60 Copynumber: 4.9 Consensus size: 59
7939521 TGCTTTTTTC
** *
7939531 TGATACTTTCAACTTTTCC--TAAAAATATTTTTAAAAAATTTT-TGTTGTCAAATAAAAT
1 TGATACTTTCAACTTTTCCTTTAAAAATATTTTTTTAAAATTTTAT-TT-TCAAAGAAAAT
* * *
7939589 TGATACTTTCAACTTTTCCTTTAAAAATATTTTTCTTCAAGTTTTATTTTTAAAGAAAAT
1 TGATACTTTCAACTTTTCCTTTAAAAATATTTTT-TTAAAATTTTATTTTCAAAGAAAAT
* * * * *
7939649 TGGTACTTTCCAACTTTTCC-TCAAGAAATCTTTTTTTGAAAATTTTA-TTTAAAAAAAAAT
1 TGATACTTT-CAACTTTTCCTTTAA-AAATATTTTTTT-AAAATTTTATTTTCAAAGAAAAT
* * * *
7939709 TGATACTTTCAACTTTTCCTTTAAAAATATATTTTTTTTAATTTTTATGTTCAAAGGAAAT
1 TGATACTTTCAACTTTTCCTTT-AAAA-ATATTTTTTTAAAATTTTATTTTCAAAGAAAAT
* * *
7939770 TGATACATTCAAC-TTTCCTTCAAAAAATATTTTTTTCAAATTTTCATTTT-AAAGA
1 TGATACTTTCAACTTTTCCTT-TAAAAATATTTTTTTAAAATTTT-ATTTTCAAAGA
7939825 GATCATTGAA
Statistics
Matches: 195, Mismatches: 28, Indels: 25
0.79 0.11 0.10
Matches are distributed among these distances:
58 19 0.10
59 30 0.15
60 79 0.41
61 66 0.34
62 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.47
Consensus pattern (59 bp):
TGATACTTTCAACTTTTCCTTTAAAAATATTTTTTTAAAATTTTATTTTCAAAGAAAAT
Found at i:7939719 original size:120 final size:117
Alignment explanation
Indices: 7939531--7939818 Score: 330
Period size: 120 Copynumber: 2.4 Consensus size: 117
7939521 TGCTTTTTTC
** * * *
7939531 TGATACTTTCAACTTTTCCT-AAAAATATTTTTAAAAAATTTTTGTTGTCAAATAAAATTGATAC
1 TGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTTAAAA-TTTTATT-TAAAAAAAAATTGATAC
* *
7939595 TTTCAACTTTTCCTTTAAAAATAT-TTTTCTTCAAGTTTTATTTTTAAAGAAAAT
63 TTTCAACTTTTCCTTTAAAAATATATTTTCTTCAAGTTTTATGTTCAAAGAAAAT
*
7939649 TGGTACTTTCCAACTTTTCCTCAAGAAATCTTTTTTTGAAAATTTTATTTAAAAAAAAATTGATA
1 TGATACTTT-CAACTTTTCCTCAA-AAAT-TTTTTTT-AAAATTTTATTTAAAAAAAAATTGATA
* * * *
7939714 CTTTCAACTTTTCCTTTAAAAATATATTTTTTTTAATTTTTATGTTCAAAGGAAAT
62 CTTTCAACTTTTCCTTTAAAAATATATTTTCTTCAAGTTTTATGTTCAAAGAAAAT
* *
7939770 TGATACATTCAAC-TTTCCTTCAAAAAATATTTTTTTCAAATTTTCATTT
1 TGATACTTTCAACTTTTCC-TC-AAAAAT-TTTTTTTAAAATTTT-ATTT
7939819 TAAAGAGATC
Statistics
Matches: 145, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
118 8 0.06
119 23 0.16
120 62 0.43
121 48 0.33
122 4 0.03
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.48
Consensus pattern (117 bp):
TGATACTTTCAACTTTTCCTCAAAAATTTTTTTTAAAATTTTATTTAAAAAAAAATTGATACTTT
CAACTTTTCCTTTAAAAATATATTTTCTTCAAGTTTTATGTTCAAAGAAAAT
Found at i:7940468 original size:8 final size:9
Alignment explanation
Indices: 7940437--7940467 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7940427 AAATTCTAAG
7940437 AAAAATCCT
1 AAAAATCCT
*
7940446 AAAAATCTT
1 AAAAATCCT
7940455 AAAAATCCT
1 AAAAATCCT
7940464 AAAA
1 AAAA
7940468 TTGCCTCTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATCCT
Found at i:7941076 original size:44 final size:44
Alignment explanation
Indices: 7941010--7941103 Score: 111
Period size: 44 Copynumber: 2.1 Consensus size: 44
7941000 CTTTTTTTTG
* * * * *
7941010 TGAAAAAGTAAATAAAGTTCCTCTAAATAGAGGC-TCAACGACTT
1 TGAAAAAGAAAATAAAGCTCCTCTAAACAAAGGCATC-ACAACTT
7941054 TGAAAAA-AAAATAAATGCTCCTCTAAACAAAGGCATCACAACTT
1 TGAAAAAGAAAATAAA-GCTCCTCTAAACAAAGGCATCACAACTT
7941098 TGAAAA
1 TGAAAA
7941104 GTAAAAAGCT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
43 7 0.16
44 34 0.79
45 2 0.05
ACGTcount: A:0.48, C:0.17, G:0.13, T:0.22
Consensus pattern (44 bp):
TGAAAAAGAAAATAAAGCTCCTCTAAACAAAGGCATCACAACTT
Found at i:7941432 original size:42 final size:42
Alignment explanation
Indices: 7941375--7941530 Score: 118
Period size: 41 Copynumber: 3.5 Consensus size: 42
7941365 AGGTTCACAT
*
7941375 TCAAGAAATCTTAGAGTTTCACATCTAAGTTCAAAGGTACTCAC
1 TCAA-AAAT-TTAGAGATTCACATCTAAGTTCAAAGGTACTCAC
* * **
7941419 TCAAAAATTTAGAGATTCACATCCAAAAGTTGAGTTCAAAGCTTTTCA-
1 TCAAAAATTTAGAGATTCACAT-C------TAAGTTCAAAGGTACTCAC
** * * *
7941467 TTTAAATTTTGGAGTTTCACATCTAA-TTCAAAGGTACTCAC
1 TCAAAAATTTAGAGATTCACATCTAAGTTCAAAGGTACTCAC
*
7941508 TCAAAAATTTAGAGATTCGCATC
1 TCAAAAATTTAGAGATTCACATC
7941531 CAAAAGTTGA
Statistics
Matches: 84, Mismatches: 20, Indels: 19
0.68 0.16 0.15
Matches are distributed among these distances:
40 11 0.13
41 19 0.23
42 13 0.15
43 5 0.06
44 4 0.05
47 1 0.01
48 17 0.20
49 14 0.17
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.33
Consensus pattern (42 bp):
TCAAAAATTTAGAGATTCACATCTAAGTTCAAAGGTACTCAC
Found at i:7941507 original size:89 final size:90
Alignment explanation
Indices: 7941388--7941578 Score: 339
Period size: 89 Copynumber: 2.1 Consensus size: 90
7941378 AGAAATCTTA
7941388 GAGTTTCACATCTAAGTTCAAAGGTACTCACTCAAAAATTTAGAGATTCACATCCAAAAGTTGAG
1 GAGTTTCACATCTAAGTTCAAAGGTACTCACTCAAAAATTTAGAGATTCACATCCAAAAGTTGAG
7941453 TTCAAAGCTTTTCATTTAAATTTTG
66 TTCAAAGCTTTTCATTTAAATTTTG
*
7941478 GAGTTTCACATCTAA-TTCAAAGGTACTCACTCAAAAATTTAGAGATTCGCATCCAAAAGTTGAG
1 GAGTTTCACATCTAAGTTCAAAGGTACTCACTCAAAAATTTAGAGATTCACATCCAAAAGTTGAG
* *
7941542 TTCAAAGCTTTTCGTTTGAATTTTG
66 TTCAAAGCTTTTCATTTAAATTTTG
*
7941567 GAGATTCACATC
1 GAGTTTCACATC
7941579 CAAAAGTTTA
Statistics
Matches: 97, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
89 82 0.85
90 15 0.15
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (90 bp):
GAGTTTCACATCTAAGTTCAAAGGTACTCACTCAAAAATTTAGAGATTCACATCCAAAAGTTGAG
TTCAAAGCTTTTCATTTAAATTTTG
Found at i:7941719 original size:66 final size:66
Alignment explanation
Indices: 7941636--7941769 Score: 223
Period size: 66 Copynumber: 2.0 Consensus size: 66
7941626 GTTTCACATC
* * *
7941636 TCAAATATTCTCATTTGAATTCAAAGATTCACATTCGACAAATTTTGGATTTCACACCTTAAAGA
1 TCAAAGATTCTCATTTGAATTCAAAGATTCACATTCGACAAATTTTGGATTTCACACCTCAAAAA
7941701 T
66 T
* *
7941702 TCAAAGATTCTCATTTGAATTCAAAGATTCACATTCGATAAATTTTGGGTTTCACACCTCAAAAA
1 TCAAAGATTCTCATTTGAATTCAAAGATTCACATTCGACAAATTTTGGATTTCACACCTCAAAAA
7941767 T
66 T
7941768 TC
1 TC
7941770 TCACTTGAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (66 bp):
TCAAAGATTCTCATTTGAATTCAAAGATTCACATTCGACAAATTTTGGATTTCACACCTCAAAAA
T
Found at i:7941785 original size:21 final size:21
Alignment explanation
Indices: 7941760--7941968 Score: 206
Period size: 21 Copynumber: 9.9 Consensus size: 21
7941750 GTTTCACACC
* *
7941760 TCAAAAATTCTCACTTGAAAT
1 TCAAAGATTCTCATTTGAAAT
* *
7941781 TCAAAGATTCTCATTTGACAC
1 TCAAAGATTCTCATTTGAAAT
* *
7941802 T-AAAAATTCTCATTTGAGGAT
1 TCAAAGATTCTCATTTGA-AAT
* * *
7941823 TCCTTAAAAATTCTCATTTGACAC
1 T-C--AAAGATTCTCATTTGAAAT
*
7941847 TCAAAGATTCTTATTTGAAAT
1 TCAAAGATTCTCATTTGAAAT
* * *
7941868 TTAAAGATTCTCATTTGATAC
1 TCAAAGATTCTCATTTGAAAT
7941889 TCAAAGATTCTCATTTGAAAT
1 TCAAAGATTCTCATTTGAAAT
*
7941910 TCAAAGATTCTTATTTGAAAT
1 TCAAAGATTCTCATTTGAAAT
*
7941931 TCAAAGATTTTCATTTG-AAT
1 TCAAAGATTCTCATTTGAAAT
* * *
7941951 TCGAATATTCACATTTGA
1 TCAAAGATTCTCATTTGA
7941969 TAAATTTTGG
Statistics
Matches: 155, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
20 31 0.20
21 105 0.68
23 1 0.01
24 2 0.01
25 16 0.10
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.39
Consensus pattern (21 bp):
TCAAAGATTCTCATTTGAAAT
Found at i:7941884 original size:42 final size:42
Alignment explanation
Indices: 7941759--7941968 Score: 235
Period size: 42 Copynumber: 5.0 Consensus size: 42
7941749 GGTTTCACAC
* *
7941759 CTCAAAAATTCTCACTTGAAATTCAAAGATTCTCATTTGACA
1 CTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGACA
* * *
7941801 CT-AAAAATTCTCATTTGAGGATTCCTTAAAAATTCTCATTTGACA
1 CTCAAAGATTCTCATTTGA-AATT-C--AAAGATTCTCATTTGACA
* * *
7941846 CTCAAAGATTCTTATTTGAAATTTAAAGATTCTCATTTGATA
1 CTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGACA
* *
7941888 CTCAAAGATTCTCATTTGAAATTCAAAGATTCTTATTTGAAA
1 CTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGACA
* * * * *
7941930 TTCAAAGATTTTCATTTG-AATTCGAATATTCACATTTGA
1 CTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGA
7941969 TAAATTTTGG
Statistics
Matches: 144, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
41 32 0.22
42 75 0.52
43 1 0.01
45 22 0.15
46 14 0.10
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (42 bp):
CTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGACA
Found at i:7941914 original size:63 final size:64
Alignment explanation
Indices: 7941759--7941948 Score: 231
Period size: 63 Copynumber: 3.0 Consensus size: 64
7941749 GGTTTCACAC
* * * * *
7941759 CTCAAAAATTCTCACTTGAAATTCAAAGATTCTCATTTGACA-CTAAAAATTCTCATTTGAGGAT
1 CTCAAAAATTCTCATTTGAAATTCAAAGATTCTTATTTGAAATTTAAAGATTCTCATTT---GAT
*
7941823 TC
63 TA
* * *
7941825 CTTAAAAATTCTCATTTGACACTCAAAGATTCTTATTTGAAATTTAAAGATTCTCATTTGA-TA
1 CTCAAAAATTCTCATTTGAAATTCAAAGATTCTTATTTGAAATTTAAAGATTCTCATTTGATTA
* * *
7941888 CTCAAAGATTCTCATTTGAAATTCAAAGATTCTTATTTGAAATTCAAAGATTTTCATTTGA
1 CTCAAAAATTCTCATTTGAAATTCAAAGATTCTTATTTGAAATTTAAAGATTCTCATTTGA
7941949 ATTCGAATAT
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
63 56 0.52
64 2 0.02
66 36 0.33
67 14 0.13
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (64 bp):
CTCAAAAATTCTCATTTGAAATTCAAAGATTCTTATTTGAAATTTAAAGATTCTCATTTGATTA
Found at i:7943160 original size:8 final size:8
Alignment explanation
Indices: 7943131--7943201 Score: 56
Period size: 8 Copynumber: 8.8 Consensus size: 8
7943121 TCAATTTGAG
7943131 TTTTTCTT
1 TTTTTCTT
*
7943139 TTTATCATT
1 TTTTTC-TT
7943148 TTTTT-TT
1 TTTTTCTT
*
7943155 TCTTTTTTT
1 T-TTTTCTT
*
7943164 TTTTTC-A
1 TTTTTCTT
*
7943171 TTTTTCAT
1 TTTTTCTT
*
7943179 TTTTTCTC
1 TTTTTCTT
7943187 TTTTTCTT
1 TTTTTCTT
7943195 ATTTTTC
1 -TTTTTC
7943202 CATCCATTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
7 9 0.18
8 26 0.52
9 15 0.30
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTCTT
Found at i:7943163 original size:28 final size:28
Alignment explanation
Indices: 7943131--7943199 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 28
7943121 TCAATTTGAG
7943131 TTTTTCTTTTTATCA-TTTT-TTTTTT-C
1 TTTTTCTTTTT-TCATTTTTATTTTTTCC
*
7943157 TTTTTTTTTTTTCATTTTTCATTTTTTCTC
1 TTTTTCTTTTTTCATTTTT-ATTTTTTC-C
7943187 TTTTTCTTATTTT
1 TTTTTCTT-TTTT
7943200 TCCATCCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
25 3 0.09
26 14 0.40
28 6 0.17
30 8 0.23
31 4 0.11
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (28 bp):
TTTTTCTTTTTTCATTTTTATTTTTTCC
Found at i:7943184 original size:15 final size:13
Alignment explanation
Indices: 7943131--7943175 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
7943121 TCAATTTGAG
7943131 TTTTTCTTTTTATCA
1 TTTTT-TTTTT-TCA
*
7943146 -TTTTTTTTTTCT
1 TTTTTTTTTTTCA
7943158 TTTTTTTTTTTCA
1 TTTTTTTTTTTCA
7943171 TTTTT
1 TTTTT
7943176 CATTTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 2 0.07
13 21 0.78
14 4 0.15
ACGTcount: A:0.07, C:0.09, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTTTTTTCA
Found at i:7943190 original size:25 final size:24
Alignment explanation
Indices: 7943131--7943201 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 24
7943121 TCAATTTGAG
* **
7943131 TTTTTCTTTTTATCATTTTTTTTT
1 TTTTTCTTTTTTTCATTTTTCATT
*
7943155 TCTTTTTTTTTTTTCATTTTTCATT
1 T-TTTTCTTTTTTTCATTTTTCATT
7943180 TTTTCTCTTTTTCTT-ATTTTTC
1 TTTT-TCTTTTT-TTCATTTTTC
7943202 CATCCATTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
24 4 0.10
25 33 0.85
26 2 0.05
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (24 bp):
TTTTTCTTTTTTTCATTTTTCATT
Found at i:7947271 original size:121 final size:120
Alignment explanation
Indices: 7947117--7947406 Score: 401
Period size: 121 Copynumber: 2.4 Consensus size: 120
7947107 ATTTGGAGGT
* * * *
7947117 TTTTATTTTAAAG-AAAATTGATACTTTCAACTTTTCC-TAAAAAATATTTTTCTTGATAATTTT
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTTAAAAATATTTTTCTT--CAAGTTT
* *
7947180 TATTTTTTAAGGAAAATTGGTACTTCCAACTTTTTCTC-AAAATGCTTTTTTCTG-AAA
64 TA-TTTTTAAGGAAAATTGATACTTCCAACTTTTCCTCAAAAATGCTTTTTT-TGAAAA
* *
7947237 TTTTAATTTCAAGAAAAATTAATACTTTCAACTTTTCCTTTAAAAATATTTTTCTTCAAGTTTTA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTTAAAAATATTTTTCTTCAAGTTTTA
*
7947302 TTTTTAAGGAAAATTGATACTTCTAACTTTTCCTCAAAAAATGCTTTTTTTGAAAA
66 TTTTTAAGGAAAATTGATACTTCCAACTTTTCCTC-AAAAATGCTTTTTTTGAAAA
*
7947358 TTTTATTTTCAA-AGAAAATTGATACTTTCAATTTTTCCTTTAAAAATAT
1 TTTTATTTTCAAGA-AAAATTGATACTTTCAACTTTTCCTTTAAAAATAT
7947407 ATATTTTTAA
Statistics
Matches: 152, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
119 32 0.21
120 21 0.14
121 83 0.55
122 16 0.11
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (120 bp):
TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTTAAAAATATTTTTCTTCAAGTTTTA
TTTTTAAGGAAAATTGATACTTCCAACTTTTCCTCAAAAATGCTTTTTTTGAAAA
Found at i:7947378 original size:61 final size:61
Alignment explanation
Indices: 7947117--7947406 Score: 283
Period size: 60 Copynumber: 4.8 Consensus size: 61
7947107 ATTTGGAGGT
*
7947117 TTTTATTTT-AAAGAAAATTGATACTTTCAACTTTTCCT-AAAAAATATTTTTCTTGATAAT
1 TTTTATTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAAATATTTTTCTTGA-AAA
* * * * * **
7947177 TTTTATTTTTTAAGGAAAATTGGTACTTCCAACTTTTTCTCAAAATGCT-TTTTTC-TG-AAA
1 TTTTA-TTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAA-AATATTTTTCTTGAAAA
* * ** * *
7947237 TTTTAATTTC-AAGAAAAATTAATACTTTCAACTTTTCCTTTAAAAATATTTTTCTT-CAAG
1 TTTTATTTTCAAAG-AAAATTGATACTTTCAACTTTTCCTCAAAAAATATTTTTCTTGAAAA
* * *
7947297 TTTTATTTTTAAGGAAAATTGATAC-TTCTAACTTTTCCTCAAAAAATGCTTTTT-TTGAAAA
1 TTTTATTTTCAAAGAAAATTGATACTTTC-AACTTTTCCTCAAAAAAT-ATTTTTCTTGAAAA
* **
7947358 TTTTATTTTCAAAGAAAATTGATACTTTCAATTTTTCCTTTAAAAATAT
1 TTTTATTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAAATAT
7947407 ATATTTTTAA
Statistics
Matches: 183, Mismatches: 34, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
58 3 0.02
59 36 0.20
60 52 0.28
61 51 0.28
62 30 0.16
63 10 0.05
64 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (61 bp):
TTTTATTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAAATATTTTTCTTGAAAA
Found at i:7948399 original size:6 final size:6
Alignment explanation
Indices: 7948356--7948417 Score: 52
Period size: 6 Copynumber: 10.0 Consensus size: 6
7948346 TTTTACTAAT
* * * * *
7948356 AAAATA AATAATA AAAATTC AAAACA AAAACA AGAATA AAAATA TAAATA
1 AAAATA AA-AATA AAAA-TA AAAATA AAAATA AAAATA AAAATA AAAATA
*
7948406 ATAATA AAAATA
1 AAAATA AAAATA
7948418 TTAACAATAG
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
6 33 0.75
7 11 0.25
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:7948411 original size:18 final size:18
Alignment explanation
Indices: 7948383--7948433 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
7948373 TTCAAAACAA
*
7948383 AAACAAGAATAAAAATAT
1 AAACAATAATAAAAATAT
*
7948401 AAATAATAATAAAAATAT
1 AAACAATAATAAAAATAT
* *
7948419 TAACAATAGTAAAAA
1 AAACAATAATAAAAA
7948434 AAACACAAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.22
Consensus pattern (18 bp):
AAACAATAATAAAAATAT
Found at i:7951072 original size:21 final size:21
Alignment explanation
Indices: 7951046--7951113 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
7951036 AACAATTTTG
7951046 ATTTTGATAACCTTTGATAAA
1 ATTTTGATAACCTTTGATAAA
* * *
7951067 ATTTTGACAACCTTTTATATA
1 ATTTTGATAACCTTTGATAAA
* * *
7951088 ATTTTGATAATCATTGATACA
1 ATTTTGATAACCTTTGATAAA
7951109 ATTTT
1 ATTTT
7951114 AGTAATTTCT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.47
Consensus pattern (21 bp):
ATTTTGATAACCTTTGATAAA
Found at i:7951167 original size:22 final size:20
Alignment explanation
Indices: 7951107--7951166 Score: 66
Period size: 22 Copynumber: 2.9 Consensus size: 20
7951097 ATCATTGATA
*
7951107 CAATTTTAGTAATTTCTAAT
1 CAATTTTAGTAATTTTTAAT
* *
7951127 AATATTTTAGTAAACTTTTAAT
1 CA-ATTTTAGT-AATTTTTAAT
7951149 GCAATTTTAGTAATTTTT
1 -CAATTTTAGTAATTTTT
7951167 TGAAAACTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
20 1 0.03
21 14 0.44
22 16 0.50
23 1 0.03
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.52
Consensus pattern (20 bp):
CAATTTTAGTAATTTTTAAT
Found at i:7951585 original size:21 final size:21
Alignment explanation
Indices: 7951539--7951593 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
7951529 TATATAATTT
*
7951539 TAATTTTGATAACCATTGATA
1 TAATTTTGGTAACCATTGATA
* *
7951560 AAATTTTGGTAACC-TTCTATA
1 TAATTTTGGTAACCATT-GATA
*
7951581 TAATTTAGGTAAC
1 TAATTTTGGTAAC
7951594 TTAATTTTAG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (21 bp):
TAATTTTGGTAACCATTGATA
Found at i:7952076 original size:26 final size:27
Alignment explanation
Indices: 7952045--7952097 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
7952035 ATAAGGAAAG
* *
7952045 TTTGATAA-TTTTTATATAATTTTGAT
1 TTTGATAACTTTTGATAAAATTTTGAT
7952071 TTTGATAACTTTTGATAAAATTTTGAT
1 TTTGATAACTTTTGATAAAATTTTGAT
7952098 AACCTTCTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (27 bp):
TTTGATAACTTTTGATAAAATTTTGAT
Found at i:7952095 original size:21 final size:21
Alignment explanation
Indices: 7952069--7952216 Score: 97
Period size: 21 Copynumber: 7.0 Consensus size: 21
7952059 TATAATTTTG
7952069 ATTTTGATAACTTTTGATAAA
1 ATTTTGATAACTTTTGATAAA
* *
7952090 ATTTTGATAACCTTCT-ATATA
1 ATTTTGATAA-CTTTTGATAAA
* ** *
7952111 ATTTTGGTAACTTACGATATA
1 ATTTTGATAACTTTTGATAAA
* * *
7952132 ATTTTGGTAA-TCATTGATACA
1 ATTTTGATAACT-TTTGATAAA
*
7952153 ATTTTGATAA-TTTCTAATAAA
1 ATTTTGATAACTTT-TGATAAA
* **
7952174 ATTTTGGTAACCTTTTGATGTA
1 ATTTTGATAA-CTTTTGATAAA
7952196 ATTTT-AGTAATCTTTTGATAA
1 ATTTTGA-TAA-CTTTTGATAA
7952217 CTTATTTTAT
Statistics
Matches: 99, Mismatches: 21, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
20 5 0.05
21 67 0.68
22 24 0.24
23 3 0.03
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (21 bp):
ATTTTGATAACTTTTGATAAA
Found at i:7952116 original size:42 final size:41
Alignment explanation
Indices: 7952069--7952216 Score: 129
Period size: 42 Copynumber: 3.5 Consensus size: 41
7952059 TATAATTTTG
*
7952069 ATTTTGATAACTTTTGATAAAATTTTGATAACCTTCTATATA
1 ATTTTGATAACTTTTGATAAAATTTTGGTAACCTT-TATATA
* ** * * * *
7952111 ATTTTGGTAACTTACGATATAATTTTGGTAATCATTGATACA
1 ATTTTGATAACTTTTGATAAAATTTTGGTAA-CCTTTATATA
* *
7952153 ATTTTGATAA-TTTCTAATAAAATTTTGGTAACCTTTTGATGTA
1 ATTTTGATAACTTT-TGATAAAATTTTGGTAACC-TTT-ATATA
7952196 ATTTT-AGTAATCTTTTGATAA
1 ATTTTGA-TAA-CTTTTGATAA
7952217 CTTATTTTAT
Statistics
Matches: 81, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
41 3 0.04
42 56 0.69
43 14 0.17
44 5 0.06
45 3 0.04
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (41 bp):
ATTTTGATAACTTTTGATAAAATTTTGGTAACCTTTATATA
Found at i:7952136 original size:63 final size:64
Alignment explanation
Indices: 7952069--7952216 Score: 160
Period size: 63 Copynumber: 2.3 Consensus size: 64
7952059 TATAATTTTG
*
7952069 ATTTTGATAACTTTTGATAAAATTTTGATAACCTTCT-ATATAATTTTGGTAA-CTTACGATATA
1 ATTTTGATAACTTTTGATAAAATTTTGATAA-CTTCTAATAAAATTTTGGTAACCTTACGATATA
* * * * ** *
7952132 ATTTTGGTAA-TCATTGATACAATTTTGATAATTTCTAATAAAATTTTGGTAACCTTTTGATGTA
1 ATTTTGATAACT-TTTGATAAAATTTTGATAACTTCTAATAAAATTTTGGTAACCTTACGATATA
7952196 ATTTT-AGTAATCTTTTGATAA
1 ATTTTGA-TAA-CTTTTGATAA
7952217 CTTATTTTAT
Statistics
Matches: 68, Mismatches: 11, Indels: 10
0.76 0.12 0.11
Matches are distributed among these distances:
62 5 0.07
63 40 0.59
64 16 0.24
65 6 0.09
66 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (64 bp):
ATTTTGATAACTTTTGATAAAATTTTGATAACTTCTAATAAAATTTTGGTAACCTTACGATATA
Found at i:7952205 original size:22 final size:22
Alignment explanation
Indices: 7952173--7952214 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7952163 TTTCTAATAA
*
7952173 AATTTTGGTAACCTTTTGATGT
1 AATTTTAGTAACCTTTTGATGT
*
7952195 AATTTTAGTAATCTTTTGAT
1 AATTTTAGTAACCTTTTGAT
7952215 AACTTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.07, G:0.14, T:0.52
Consensus pattern (22 bp):
AATTTTAGTAACCTTTTGATGT
Found at i:7952603 original size:529 final size:523
Alignment explanation
Indices: 7951083--7952650 Score: 1859
Period size: 528 Copynumber: 3.0 Consensus size: 523
7951073 ACAACCTTTT
* * * * *
7951083 ATATAATTTTGATAATCATTGATACAATTTT-AGTAATTTCTAATAATATTTTAGTAAACTTTTA
1 ATATAATTTTGGTAATCATTGATACAATTTTGA-TAATTTCTAATAAAATTTTGGTAACCTTTTG
* * * * * *
7951147 ATGCAATTTTAGTAATTTTTTGAAAACTTATGATATACTTTTGATAAATATTGATAAAATTTATA
65 ATGTAATTTTAGTAATTTTTTGATAACTTATAATATACTTTTGGTAATTATTGACAAAATTTATA
* * * * * * *
7951212 TCATGATATATTTAATAATAGATTCTTGTAAGAAAGCATTAGTTCAATTCTAGTATAAAATAATT
130 TCATCATATATTTAATAATAGATTCATATAAGAAAGCACTGGTTCAATTCTAGTATAAGAT-TTT
* * * *
7951277 TTTTATACAATAACATCATTATTTCATTTAAATTTAGAA---TT-TT--T--A---TTCATTAAA
194 TTTTATATAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTACTAAATTTTTTATTAAA
* *
7951331 TAG-GTTATGGTAAGTTTACCCTAGTCTCCCAAAATAAATTTTCTAACTCTATTTTGCTAGTAAC
259 TAGATTTATGGTAAGTTTACCCTAGTCTCCCAAAATAAAATTTCTAACTCTATTTTGCTAGTAAC
* * * *
7951395 TAAG-TGTTAATTGTCTAATTCTTATCTCTAAAAATTCATTCCAATAAATAATTTTTTTATACTA
324 CAAGAT-TCAATTGTATAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTTATACTA
*
7951459 TGATAATAATGATAAATACTAATAATTTGATTTGGATTTTGATATAATATAAGTAAAATTTGATA
388 TGATAATAATGATAAATACTAATAATTTGATTTTGATTTTG-----ATATAAGTAAAATTTGATA
**
7951524 ATTTTTATATAATTTTA-----ATTTTGATAACCATTGATAAAATTTTGGTAACCTTCTATATAA
448 ATTTTTATATAATTTTATTTTGATTTTGATAACTTTTGATAAAATTTTGGTAACCTTCTATATAA
*
7951584 TTTAGGT-AAC
513 TTTTGGTAAAC
* * *
7951594 -T-TAATTTTAGTAACCATTGATACAATTTTGATAATTTCTAATAAAATTTTGGCAACCTTTTGA
1 ATATAATTTTGGTAATCATTGATACAATTTTGATAATTTCTAATAAAATTTTGGTAACCTTTTGA
* * *
7951657 TGTAATTTTAGTAATTTTTTGATAA-TGTATAGTATACTTTTGGTAATTATTAACAAAATTTGTA
66 TGTAATTTTAGTAATTTTTTGATAACT-TATAATATACTTTTGGTAATTATTGACAAAATTTATA
* * * * *
7951721 TCATCATATATTTAATAATAAATTTATATAGGAAAGCACGGGTTCAATTATAGTATAAGTTAATT
130 TCATCATATATTTAATAATAGATTCATATAAGAAAGCACTGGTTCAATTCTAGTATAAG---ATT
*
7951786 TTCATTTTATATAATAACATTATTGTTTCATTTACATTTAGAATTTTTGTTTACTAAATTTTTTT
192 TT--TTTTATATAATAACATTATTGTTTCATTTAAATTTAGAATTTTTG-TTACTAAA-TTTTTT
* * * * * *
7951851 ATTAAATGGATTTATGGGTAAGTTTACCCTCGTTTACC-AGATAAAATTTCTAAATCTATTTTTG
253 ATTAAATAGATTTAT-GGTAAGTTTACCCTAGTCTCCCAAAATAAAATTTCTAACTCTA-TTTTG
* *
7951915 CTAGTAACCAAGATTCAGTTGTATAATTCTTATCTTTAAAAGTTCATTCCAATAAATAATTTTTT
316 CTAGTAACCAAGATTCAATTGTATAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTT
* * *
7951980 TATACTATGATAATAACGATAAATATTAATAATTTGATTTTGATTTTGATATAATATAAGGAAAG
381 TATACTATGATAATAATGATAAATACTAATAATTTGATTTTGATTTTGATATAA-GT-A--AAA-
*
7952045 TTTGATAATTTTTATAT-A----ATTTTGATTTTGATAACTTTTGATAAAATTTTGATAACCTTC
441 TTTGATAATTTTTATATAATTTTATTTTGATTTTGATAACTTTTGATAAAATTTTGGTAACCTTC
7952105 TATATAATTTTGGTAACTTAC
506 TATATAATTTTGGTAA---AC
7952126 GATATAATTTTGGTAATCATTGATACAATTTTGATAATTTCTAATAAAATTTTGGTAACCTTTTG
1 -ATATAATTTTGGTAATCATTGATACAATTTTGATAATTTCTAATAAAATTTTGGTAACCTTTTG
* ** ** *
7952191 ATGTAATTTTAGTAATCTTTTGATAACTTATTTTATACACTTGGTAATTATTGACAAATTTTATA
65 ATGTAATTTTAGTAATTTTTTGATAACTTATAATATACTTTTGGTAATTATTGACAAAATTTATA
* * * * * *
7952256 TCATCATATATTTAACAATAGATTCCTATAAAAAAGTGA-TGGTTCAGTTCTAATATAAGATTTT
130 TCATCATATATTTAATAATAGATTCATATAAGAAAG-CACTGGTTCAATTCTAGTATAAGATTTT
*
7952320 TTTTATATAATAATATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTATTAA
194 TTTTATATAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTT-ACTAAATTTTTTATTAA
* * * *
7952385 ATAGATTTATGGTAAATTTATCTTAATCTCCCAAAATAAAATTTCTAACTCTATATTTGCTAGTA
258 ATAGATTTATGGTAAGTTTACCCTAGTCTCCCAAAATAAAATTTCTAACTCTAT-TTTGCTAGTA
* * *
7952450 ACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAAAAAATAA-TTTTTTATATT
322 ACCAAGATTCAATTGTATAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTTATACT
* * *
7952514 ATGATAGTAATGATTAATACTAATAATTTAATTTTGATTTTGATATAAGTAAAATTTGATAATTT
387 ATGATAATAATGATAAATACTAATAATTTGATTTTGATTTTGATATAAGTAAAATTTGATAATTT
* * * *
7952579 TTATATAATTTTGATTTTGATTTTGGTAA-TTTCTAATAAAATTTTGGTAACCTTTTGATGTAAT
452 TTATATAATTTT-ATTTTGATTTTGATAACTTT-TGATAAAATTTTGGTAACCTTCT-ATATAAT
*
7952643 TTTAGTAA
514 TTTGGTAA
7952651 TCTTTTGATA
Statistics
Matches: 896, Mismatches: 107, Indels: 89
0.82 0.10 0.08
Matches are distributed among these distances:
508 1 0.00
509 153 0.17
510 2 0.00
511 2 0.00
512 2 0.00
513 35 0.04
516 2 0.00
518 2 0.00
520 1 0.00
522 1 0.00
523 24 0.03
524 5 0.01
525 1 0.00
526 11 0.01
527 26 0.03
528 261 0.29
529 136 0.15
530 62 0.07
532 7 0.01
534 1 0.00
535 159 0.18
536 2 0.00
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.46
Consensus pattern (523 bp):
ATATAATTTTGGTAATCATTGATACAATTTTGATAATTTCTAATAAAATTTTGGTAACCTTTTGA
TGTAATTTTAGTAATTTTTTGATAACTTATAATATACTTTTGGTAATTATTGACAAAATTTATAT
CATCATATATTTAATAATAGATTCATATAAGAAAGCACTGGTTCAATTCTAGTATAAGATTTTTT
TTATATAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTACTAAATTTTTTATTAAATA
GATTTATGGTAAGTTTACCCTAGTCTCCCAAAATAAAATTTCTAACTCTATTTTGCTAGTAACCA
AGATTCAATTGTATAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTTATACTATGA
TAATAATGATAAATACTAATAATTTGATTTTGATTTTGATATAAGTAAAATTTGATAATTTTTAT
ATAATTTTATTTTGATTTTGATAACTTTTGATAAAATTTTGGTAACCTTCTATATAATTTTGGTA
AAC
Found at i:7952650 original size:22 final size:22
Alignment explanation
Indices: 7952618--7952659 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7952608 TTTCTAATAA
*
7952618 AATTTTGGTAACCTTTTGATGT
1 AATTTTAGTAACCTTTTGATGT
*
7952640 AATTTTAGTAATCTTTTGAT
1 AATTTTAGTAACCTTTTGAT
7952660 AACTTATGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.07, G:0.14, T:0.52
Consensus pattern (22 bp):
AATTTTAGTAACCTTTTGATGT
Found at i:7953176 original size:22 final size:21
Alignment explanation
Indices: 7953116--7953181 Score: 51
Period size: 22 Copynumber: 3.0 Consensus size: 21
7953106 CCACTCATAC
* *
7953116 AATTTTGGTAATTTTTTTATA
1 AATTTTAGTAATTTTTTGATA
* ** *
7953137 AAATTTAGGTAAACTTTTGATGT
1 AATTTTA-GTAATTTTTTGAT-A
*
7953160 AATTTTAGTAATTTTTTAATA
1 AATTTTAGTAATTTTTTGATA
7953181 A
1 A
7953182 CTTATGATAT
Statistics
Matches: 32, Mismatches: 11, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
21 6 0.19
22 20 0.62
23 6 0.19
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.53
Consensus pattern (21 bp):
AATTTTAGTAATTTTTTGATA
Found at i:7953607 original size:41 final size:41
Alignment explanation
Indices: 7953561--7953696 Score: 114
Period size: 41 Copynumber: 3.2 Consensus size: 41
7953551 TATAATATTG
*
7953561 ATTTTGATAACCTTTAATAAAATTTTGGTAACCTTTTAT-TA
1 ATTTTGGTAA-CTTTAATAAAATTTTGGTAACCTTTTATATA
* * * ** *
7953602 ATTTTGGCAACTTATGATACAATTTTGGTAACAATTTATACA
1 ATTTTGGTAACTT-TAATAAAATTTTGGTAACCTTTTATATA
* * *
7953644 ATTTTGGTAATTTTTTATAAAA-TTTGTATAACCTTTTGATATA
1 ATTTTGGTAA-CTTTAATAAAATTTTG-GTAACCTTTT-ATATA
*
7953687 ATTTTAGTAA
1 ATTTTGGTAA
7953697 TATTTTAATA
Statistics
Matches: 74, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
40 3 0.04
41 33 0.45
42 23 0.31
43 15 0.20
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.48
Consensus pattern (41 bp):
ATTTTGGTAACTTTAATAAAATTTTGGTAACCTTTTATATA
Found at i:7953660 original size:21 final size:21
Alignment explanation
Indices: 7953561--7953668 Score: 92
Period size: 21 Copynumber: 5.2 Consensus size: 21
7953551 TATAATATTG
* * * *
7953561 ATTTTGATAACCTTTAATAAA
1 ATTTTGGTAACTTTTTATACA
* *
7953582 ATTTTGGTAACCTTTTAT-TA
1 ATTTTGGTAACTTTTTATACA
* * *
7953602 ATTTTGGCAACTTATGATACA
1 ATTTTGGTAACTTTTTATACA
**
7953623 ATTTTGGTAACAATTTATACA
1 ATTTTGGTAACTTTTTATACA
* *
7953644 ATTTTGGTAATTTTTTATAAA
1 ATTTTGGTAACTTTTTATACA
7953665 ATTT
1 ATTT
7953669 GTATAACCTT
Statistics
Matches: 69, Mismatches: 17, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
20 15 0.22
21 54 0.78
ACGTcount: A:0.34, C:0.08, G:0.09, T:0.48
Consensus pattern (21 bp):
ATTTTGGTAACTTTTTATACA
Found at i:7954152 original size:42 final size:42
Alignment explanation
Indices: 7954106--7954206 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
7954096 TCATAACCTT
* * * *
7954106 TGATAAAATTTTAGTAACCT-TTTATATAATTTTAGTAACTTA
1 TGATAAAATTTTGGTAA-CTATTGACACAATTTTAGTAACTTA
* * *
7954148 TGATATAATTTTGGTAACTATTGACACAATTTTAGTAATTTT
1 TGATAAAATTTTGGTAACTATTGACACAATTTTAGTAACTTA
*
7954190 TTATAAAATTTTGGTAA
1 TGATAAAATTTTGGTAA
7954207 GTTTTTCATG
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 2 0.04
42 47 0.96
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.48
Consensus pattern (42 bp):
TGATAAAATTTTGGTAACTATTGACACAATTTTAGTAACTTA
Found at i:7954211 original size:21 final size:21
Alignment explanation
Indices: 7954099--7954212 Score: 93
Period size: 21 Copynumber: 5.4 Consensus size: 21
7954089 TTTATTTTCA
* *
7954099 TAACCTTTGATAAAATTTTAG
1 TAACTTTTTATAAAATTTTAG
* *
7954120 TAACCTTTTATATAATTTTAG
1 TAACTTTTTATAAAATTTTAG
* * * *
7954141 TAACTTATGATATAATTTTGG
1 TAACTTTTTATAAAATTTTAG
* * * *
7954162 TAACTATTGACACAATTTTAG
1 TAACTTTTTATAAAATTTTAG
* *
7954183 TAATTTTTTATAAAATTTTGG
1 TAACTTTTTATAAAATTTTAG
*
7954204 TAAGTTTTT
1 TAACTTTTT
7954213 CATGTACTTT
Statistics
Matches: 75, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 75 1.00
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.49
Consensus pattern (21 bp):
TAACTTTTTATAAAATTTTAG
Found at i:7954622 original size:533 final size:534
Alignment explanation
Indices: 7953098--7960955 Score: 5927
Period size: 533 Copynumber: 14.8 Consensus size: 534
7953088 ATAATTTTGG
* * * *
7953098 TTTGGTAACCACTCATACAATTTTGGTAATTTTTTTATAAAATTTAGGTAAAC-TTTTGATGTAA
1 TTTGGTAACTATTGATACAATTTTGGTAA-TTTTTTATAAAATTTTGGT-AACTTTTTGATGTAA
* * * * * *
7953162 TTTTAGTAATTTTTTAATAACTTATGATATACTTTTAGTAATTATT-ATTAAAATCTATGTAATC
64 TTTTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGA-TAAAATTTGTGTCATC
* * * *
7953226 ATATATTTAATAATAGATTCTTAAAGGAAA-ACGCGAGTACAATTCTATTATAAGATAA-TTT-T
128 ATATATTTAATAATAGATTCTTATAGGAAAGA-GCGGGTTCAGTTCTATTATAAGATAATTTTCT
* * *
7953288 TTTTATACAATAACAATATTATTTCATTTAAATTTAGAATTTTTGTTCACTAATTTTTTTTATTA
192 TTTTATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTA
* * * * * * * *
7953353 AACATGTTTATAGTAAGTTTATCCTAATC-CCTAAAGATAAAATTTTTAACTCTATTTTCGTTA-
257 AATAGGTTTATGGTAAGTTTATCCTAGTCTCC-CAAGATAAAATTTCTAACTCTATTTTTGCTAG
* * * * * * *
7953416 T-A--AAGAGTCAATTTTGCAACTCGTATATTTAACAATTCATTCCAATAAATAATTTTTTATAC
321 TAACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATAC
* * *
7953478 TATGATAACAATGATAAATACTCATAATTTAATTTTGAATTTGATATAATATAAGT-AAATTTGA
386 TATGATAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAAATTTGA
* *
7953542 TAATTTTTATATAATATTGATTTTGATAACCTTTAATAAAATTTTGGTAACCTTTTAT-TAATTT
451 TAATTTTTATATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATTT
* *
7953606 TGGCAACTTATGATACAAT
516 TGGTAACTTATGATATAAT
* * * * *
7953625 TTTGGTAACAATTTATACAATTTTGGTAATTTTTTATAAAA-TTTGTATAACCTTTTGATATAAT
1 TTTGGTAACTATTGATACAATTTTGGTAATTTTTTATAAAATTTTG-GTAACTTTTTGATGTAAT
* * * * * * * * *
7953689 TTTAGTAATATTTTAATAATTTATAATAAACTTTTAGTAACTATT-AGTAAAATTTATGTCATTA
65 TTTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGA-TAAAATTTGTGTCATCA
* * * ** * * * * *
7953753 TATATTTAAAAATAGATTCTTATAAGAAAGTGCATGTCCAATTTTAGTATAAGATAATTTTCATT
129 TATATTTAATAATAGATTCTTATAGGAAAGAGCGGGTTCAGTTCTATTATAAGATAATTTTCTTT
* * * * * *
7953818 TTATACAATAACGTTCTTATATT-ACTTAAATTTAGAATTTTTGTTTACTAGATTTTTTTA-TAA
194 TTATACAATAACATTATTGT-TTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAA
* * * ** * *
7953881 ACAGGTTTATGGTAAGTATATCATAGTCTCTTAAGAT-AAATTTATAACTCTATTTTTGCTTGTA
258 ATAGGTTTATGGTAAGTTTATCCTAGTCTCCCAAGATAAAATTTCTAACTCTATTTTTGCTAGTA
** * *
7953945 ACTGAGATTCAATTGTGTAATTCTTATTTTTAAAAATTCATTCCGATAAATAATTTTTTATACTA
323 ACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATACTA
* * *
7954010 TGATAATAATGATAAAAACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAATTTTGGTA
388 TGATAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAAATTTGATA
* * * * * *
7954075 TTTTTTAAATAATTTTTATTTTCATAACCTTTGATAAAATTTTAGTAACCTTTTATATAATTTTA
453 ATTTTTATATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATTTTG
7954140 GTAACTTATGATATAAT
518 GTAACTTATGATATAAT
* * * * *
7954157 TTTGGTAACTATTGACACAATTTTAGTAATTTTTTATAAAATTTTGGTAAGTTTTTCATGTACTT
1 TTTGGTAACTATTGATACAATTTTGGTAATTTTTTATAAAATTTTGGTAACTTTTTGATGTAATT
** * *
7954222 TTAACAATCTTTTGATAACTTATTATATACTTTTGGTAATTATTGATAAAAATTGTGTCATCATA
66 TTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCATA
* * * * * *
7954287 TATTTAAAAATAGATTCTTATAGCAAAGAGCGGGTTTAGTACTATTCTACGATAATTTTCTTTTT
131 TATTTAATAATAGATTCTTATAGGAAAGAGCGGGTTCAGTTCTATTATAAGATAATTTTCTTTTT
* * * * *
7954352 ATATAATAATATTATTGTTTCATTTAAATTTAGAATTTTTGCTCCCTAAATTTTTTAATTAAATA
196 ATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAATA
** * * *
7954417 TCTTTATGGTAAGTTTCTCCTAATCTCCCAAGATAAAATTT-TAACTCTATTTTTGCTAGTAACT
261 GGTTTATGGTAAGTTTATCCTAGTCTCCCAAGATAAAATTTCTAACTCTATTTTTGCTAGTAACC
* * * * * *
7954481 AAGATCCAATTGTGTAATTCTTATATTTGAAAATTCATTCCAATAAATAATTTTCTATAGTATGG
326 AAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATACTATGA
* *
7954546 TAATAATGATAAATACTAATAATTTAATTTTTATTTTGATATAATATAATTAAAATTTGATAATT
391 TAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAAATTTGATAATT
* * * * * * *
7954611 TTTCTATAATTTTGAATTTT-TTAACATTTAATAAAATTTTGATAACCTTCTATATAATTTTGAT
456 TTTATATAATTTTG-ATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATTTTGGT
* *
7954675 AACTTATAACATAAT
520 AACTTATGATATAAT
* * * *
7954690 TTTGGTAACTATTTATACAATTTTGGTAATTTTTTATAAAATTTTAGTAACTTTTTTATATAATT
1 TTTGGTAACTATTGATACAATTTTGGTAATTTTTTATAAAATTTTGGTAACTTTTTGATGTAATT
* * * * * *
7954755 TTAGTAATCATTTGATAAGTTACGATATATTTTTGGTAATTATTAATAAAATTTGTGTCATTATA
66 TTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCATA
* * * * * * * *
7954820 TATTTAAAAAGTAGATTTTTATAAGAAAGTGCAGGTTCAATTCAAGTATAAGATAATTTTCTTTT
131 TATTTAATAA-TAGATTCTTATAGGAAAGAGCGGGTTCAGTTCTATTATAAGATAATTTTCTTTT
*
7954885 TATACAATAACATTATTATTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAAT
195 TATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAAT
* * *
7954950 AGGTTTATGTTAAGTTTATCCTAGTCGT-CCAATATAAAAATTT-TAACTCTA-TTTTGCTAGGA
260 AGGTTTATGGTAAGTTTATCCTAGTC-TCCCAAGAT-AAAATTTCTAACTCTATTTTTGCTAGTA
* *
7955012 ACCAACATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCTAATAAATAA-TTTTTATACTA
323 ACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATACTA
** * *** * *
7955076 CAATAATAATGATGAATACTAATAATTTAATTTTGATTCCAAAATAATATAAGTAAATTTTGATA
388 TGATAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAAATTTGATA
* * ** *
7955141 ATTTTTATATAATTTTGATTTTGACAACCTTTGATAAAA-TTTGGTAATCTCCTATATAATTTTA
453 ATTTTTATATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATTTTG
*
7955205 GTAACCATTA--ATACAAT
518 GTAA-C-TTATGATATAAT
* * * * ** * *
7955222 TTCGCTAA-TTTCTGATAAAATTTTGGTAACTTTTTTATGTAATTTTAGTAACCTTTTGA--TAA
1 TTTGGTAACTAT-TGATACAATTTTGGTAA-TTTTTTATAAAATTTTGGTAACTTTTTGATGTAA
* * * * * *
7955284 CTTGT-GATATTCTTTTGGTAAC-TAT-TTATACAATTTTGATAATTTTTTG-TAAAATTT-TGG
64 -TTTTAG-TAATCTTTTGATAACTTATGATATAC--TTTTGGTAA-TTATTGATAAAATTTGT-G
* ** * * ** * ** * **** ** *
7955344 TAACTTTTTTATGTAATTTTAGTAATCATTTGATAAGTTATGA-TATATT-TTTTGTAATTATTA
123 TCA-TCATATATTTAATAATAG-ATTC--TT-AT-AGGAAAGAGCGGGTTCAGTTCT-ATTA-TA
* * * ** * * * * ** ** * **
7955407 ATAAAATTTGTGTCATTATATATTTAAAAAGTAGATT-TTT-ATAAAAAAGTACG-AGTTTAATT
180 AGATAATTT-TCTTTTTATACA-AT-AACA-T-TATTGTTTCATTTAAATTTA-GAATTTTTGTT
* ** * *** ** * *** **
7955469 CAAGTATAAGATAGTTTTCTT---T---TTATACAATAACATTAT--TATTTCATTTAAATTTAG
239 C-A--CTAA-ATTTTTTTATTAAATAGGTT-TATGGTAAGTTTATCCTA-GTC-TCCCAAGATA-
* * * ** * * ** * * * * ** * **
7955526 AATTTTTGTTCACTAAATTTTT-TTATTAAATAAG-TTTACGTTAAGT-TTATCCTGGTCATCCA
296 AA-ATTT-CTAACTCTATTTTTGCTAGTAACCAAGATTCA-ATT--GTGTAATTCTTATCTTTAA
* ** * * * * * * ** ***
7955588 ACATAAAATTTC--TAACTCTATTTTGCTAGTAACCAAGATTCAATTGTGTAGTTCGTATCTTTA
356 AAAT-TCATTCCAATAAAT-AATTTT-TTA-T-ACTATGA-T-AATAATG-A-TAAATA-C--TA
* * * ** * * ** * *
7955651 A-AAATTCATTCTAATAAATAATTTTTTATAATATAA-TAATAATGATGAATACTAATAATTTAA
409 ATAATTTAATT-T--T-GAT--TTTGATATAATATAAGTAA-AAT-TTG-ATAATTTTTATATAA
* * * * * *
7955714 TTTTGATTCTGAAATAA--TATAAGT-AAATTTTGATAA-TTTTTATATAATTTTGATTTTGACA
465 TTTTGATTTTG--ATAACCTTTGA-TAAAATTTTGGTAACCTTTTATATAATTTTG-----G-TA
*
7955775 ACCTT-TGATA-AAA
521 A-CTTATGATATAAT
** * * ** * * ** * **
7955788 TTTGGTAACCTCCT-ATATAATTTTGGTAACTAATGATATAATTTTGGTAAC-CATTAATACAAT
1 TTTGGTAA-CTATTGATACAATTTTGGTAATTTTTTATAAAATTTTGGTAACTTTTTGATGTAAT
** * * **
7955851 TTCGGTAAT-TTTTGATAAACTTTTGGTA-ACTTTTTGGTGTAATT-TT-AGTAACCTTT-TGAT
65 TTTAGTAATCTTTTGAT-AACTTATGATATAC-TTTT-G-GTAATTATTGA-TAAAATTTGTG-T
* ** ** ** * * * * *
7955911 AACTTGTGATATTCTTTTGGTA-ATTCTTGACA--AAATA-TGTG-TCA--TCATATGTTTAATG
124 CA-TCAT-ATATT-TAATAATAGATTCTT-ATAGGAAAGAGCGGGTTCAGTTC-TAT-TATAA-G
* * *** * * * * * *
7955969 ATAGATTATCATAGGAAAGAGTAGATACAATTCTAGTATAAGATAATTTTCTTTTTATACAATAA
182 ATA-ATTTTCTTTTTATACA--ATA-AC-A-T-TA-T-T--G-----TTTC-ATTTA-A-ATTTA
* * * * * *** *** **
7956034 CATTATTATTTCATTTAAATTTAGAATTTTTATTCACTAAATTTTTTTATTAAATAGTTTATGGT
228 GA--ATT-TTT--GTT-CA-CTA-AATTTTT-TT-ATTAAATAGGTTTATGGTA-AGTTTATCCT
* * ** * * * * * ** * ** ** **
7956099 AAGTTTATCTTAGTCTCCCAAAA--T-AAAATTTCTTACT-CTATTTTTCTTAGTAACCAAGATT
282 -AGTCT-CCCAAG-AT---AAAATTTCTAACTCTATTTTTGCTA-GTAACCAAG-ATTC-A-A--
* * * *
7956160 CAATTGTGTAATTCTTATCTTTAAAAATTTATTTCAATAAATAAAATTTTTATAATATGATAATA
335 ---TTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAAT-AATTTTTTATACTATGATAATA
* * **
7956225 ATGATAAATACTAATACTTTAATTTTGATTTTGATATAATATAAGTAAAATTTGATAAGTTTTGC
396 ATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAAATTTGATAATTTTTAT
* *
7956290 ATAATTTTGATTTTGATAACTTTTGATAAAATTTTGGTAA-C---T-TATAA---T-ATAA-TT-
461 ATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATTTTGGTAACTTA
*
7956344 T--TA-CA-
526 TGATATAAT
* * * * *
7956349 -----T-ACCATTGATCCAATTTTGGTAATTTCTGATAAAATTTTGATAACCTTTTT-ATGTAAT
1 TTTGGTAACTATTGATACAATTTTGGTAATTTTTTATAAAATTTTGGTAA-CTTTTTGATGTAAT
* *
7956407 TTTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTTAT-AAATTTGTGTCATAAT
65 TTTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCAT
* * ** ** * * *
7956471 ATATTTAACAATAGATTTTTATAAAAAAGCA-CGAATTCAGTTTTAGTATTAGATAA-TTT-TTT
130 ATATTTAATAATAGATTCTTATAGGAAAG-AGCGGGTTCAGTTCTATTATAAGATAATTTTCTTT
* * * * * *
7956533 TTATATAATAACATTACTGTTTCATTTAAATTTATAAATTTT-TT-ACTGAATTTTTTTGTTAAA
194 TTATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAA
* * * ** *
7956596 TAGATTTATGGT-AGTCTATCTTAGTCTTTC-A-ATCAAAATTTTCTAACTCTGTTTTTGCTAGT
259 TAGGTTTATGGTAAGTTTATCCTAGTCTCCCAAGAT-AAAA-TTTCTAACTCTATTTTTGCTAGT
* * *
7956658 AACCAAGATTCAGTTGTGTAATTCTTATCTTTAAAAATTCATTCCCAT-AGTAATTCTTTTATAC
322 AACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATT-TTTTATAC
* * *
7956722 TATGAAAATAATGATAAATACTAATAATTTAATTTTAATTTTGATATAATAGAAGTAAAATTTGA
386 TATGATAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAAATTTGA
* *
7956787 TAATTTTTATATAATTTTAATTTTGATAACCTTTCATAAAATTTTGGTAACCTTTTATATAATTT
451 TAATTTTTATATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATTT
7956852 TGGTAACTTATGATATAAT
516 TGGTAACTTATGATATAAT
* * * * * *
7956871 TTTGGTAAGC-ATTGGTACAATTTTGGTAATTTCTAATTAAATTTTTGTAACCTTTTGATGTAAT
1 TTTGGTAA-CTATTGATACAATTTTGGTAATTTTTTATAAAATTTTGGTAACTTTTTGATGTAAT
* * * * * * * *
7956935 TTTAATAATTTTTTTATAAGTTATGATAAACTTTGGGTAATTATTGATAAAGTTTGTGTTATCAT
65 TTTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCAT
* * * * * * *
7957000 ATATTTAATAATAGATTCTTCTCAGG-AAGTGTGAGTTCAGTTCTAGTATAATAAAATTTTCTTT
130 ATATTTAATAATAGATTCTTAT-AGGAAAGAGCGGGTTCAGTTCTATTATAAGATAATTTTCTTT
* * * * *
7957064 TTATGCAATAACATTATTATTTTATTTAAATTTAGAATTTTTGTTTACTAAATTTTTGTA-TAAA
194 TTATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAA
* * *
7957128 CAAGTTTATGGTAAGTTTATCCTAGTCTCCCAAGATAAAATTTATAACTCTATTTTTGCTAGCAA
259 TAGGTTTATGGTAAGTTTATCCTAGTCTCCCAAGATAAAATTTCTAACTCTA-TTTT--T-G---
* *
7957193 CCAAGATAGTAACCAAGATTCAATTGTATAATTCTTATCTTTAAAATTTCATTCCAATAAATAAA
317 -C----TAGTAACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAAT-AA
* *
7957258 TTTTTTATACCATGATAATAATGATAAAGACTAATAATTTAATTTTGATTTTGATATAATATAAG
376 TTTTTTATACTATGATAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAG
* *
7957323 TAAAATTTGATCATTGTTATATAATTTT-A-----AT----TTTG-----A------TAACCTTT
441 TAAAATTTGATAATTTTTATATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTT
* *
7957367 TATATAATTTTGGTAACTTATGAAACAAT
506 TATATAATTTTGGTAACTTATGATATAAT
* * * * *
7957396 TTTGGTAACTACTGACACAATTTTAGTAATTTTTTATAAAATTTTAGTAAGC-TTTTGATGTACT
1 TTTGGTAACTATTGATACAATTTTGGTAATTTTTTATAAAATTTTGGTAA-CTTTTTGATGTAAT
* * * *
7957460 TTTAGTAATCTTTTGATAACTTATTATATCCTTTTGGTAATTATTAATAACAA-TTGTGTTATCA
65 TTTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGATAA-AATTTGTGTCATCA
* * * * * * * *
7957524 TATATTTAATTATAGATTCTTAGAGGAAAGCA-TGGGTCCGGTACTATTATACGACAATTTTCTT
129 TATATTTAATAATAGATTCTTATAGGAAAG-AGCGGGTTCAGTTCTATTATAAGATAATTTTCTT
* * * * * * *
7957588 TTTATATAATAATACTATTATTTCATTTAATTTTAGAATTTTTGTTCCCAAAATTTTTTTATTAA
193 TTTATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAA
* * * * * * * * *
7957653 ATACGTTTACGGTAAGTTTCTCTTAATCTTCCAAGATAAAATTTTTAACTTTATTTTTCCTAGTA
258 ATAGGTTTATGGTAAGTTTATCCTAGTCTCCCAAGATAAAATTTCTAACTCTATTTTTGCTAGTA
* *
7957718 ACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAACAATTTTTTATAGTA
323 ACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATACTA
* * * *
7957783 TGATAATAATTATAAATACCAATAATTTAATTTTGA-TTTGATTTAATATAAG-AAAATTTTGTT
388 TGATAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAAA-TTTGAT
* * * * * ** * *
7957846 AATTTTTATATAATTTTGAATTTGTTAGCATTTAATAAAATTTTAATAACCTTTCATATATTTTT
452 AATTTTTATATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATTTT
* * *
7957911 GATAA-ATATAATATAAT
517 GGTAACTTATGATATAAT
* * *
7957928 TTTCGTAACTATTTATACAA-TTCGGTTAATTTTTTATAAAATTTTGGTAACTTTTTGATGTAAT
1 TTTGGTAACTATTGATACAATTTTGG-TAATTTTTTATAAAATTTTGGTAACTTTTTGATGTAAT
* * *
7957992 TTTAGTAAGT-TTTTTATAACTTATGATATACTTTTGGTAATTATTAATAAAATTTGTGTCATTA
65 TTTAGTAA-TCTTTTGATAACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCA
* * * * * *
7958056 TATATTTAAAAAGTAGATTCTTATAGGAAAGCGCGGATTTAGTTCAAATATAAGATAATTTTCTT
129 TATATTTAATAA-TAGATTCTTATAGGAAAGAGCGGGTTCAGTTCTATTATAAGATAATTTTCTT
* *
7958121 TTTATACAATAACATTATTGTTTCATTTAAATTTAAAATTTTGGTTCACTAAATTTTTTTATTAA
193 TTTATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAA
* * * ** *
7958186 ATAGGTTTGTGTTAAGTTTATCCTAGTCGT-CCAACATAAAATTTCTATGTCTATTTTTTCTAGT
258 ATAGGTTTATGGTAAGTTTATCCTAGTC-TCCCAAGATAAAATTTCTAACTCTATTTTTGCTAGT
* *
7958250 AACCTAGATTCAATTGTGTAATTCTTGTCTTTAAAAATTCATTCCAATAAATAATTTTTTATACT
322 AACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATACT
* * *
7958315 ATAATAATAATGATAAATACTAA-AATTTAAATTT-ATTTTGATATAATATAAGTAAATTTTGAT
387 ATGATAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAAATTTGAT
* * * * **
7958378 AATTTATATATAATTTTGATTTTAACAACCTTTGATAAAA-TTTGGTAA--TCTCCTATAATTTT
452 AATTTTTATATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATTTT
7958440 GGTAACTTATGATATAAT
517 GGTAACTTATGATATAAT
* * * **
7958458 TCTGGTAACCATTAATACAATTTAT-GTAATTTTTGGTAAAATTTTGGTAACTTTTTGATGTAAT
1 TTTGGTAACTATTGATACAATTT-TGGTAATTTTTTATAAAATTTTGGTAACTTTTTGATGTAAT
* ** * * * *
7958522 TTTAGTAACCTTTAAATAAATTATGATATACTTTTGGTAATTGTTGACAAAATATGTGT-ATCAT
65 TTTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCAT
* * * * * * * *
7958586 ATGTTTAATAATAGATTATCATAGGAAAGCGCCGGTACAGTTCTAGTATAAGATAATTTT-TTTA
130 ATATTTAATAATAGATTCTTATAGGAAAGAGCGGGTTCAGTTCTATTATAAGATAATTTTCTTTT
* * * * *
7958650 TATATAATAATATTTTTATTTCATTTAAATTTATAATTTTTGTTCACTAAATTTTTTTATTAAAT
195 TATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAAT
* * * * *
7958715 AGGTTTATGATAAGTTTATCCTAATTTCCTAAGATAAAATTTCTAACTCTATTTTAGCTAGTAAC
260 AGGTTTATGGTAAGTTTATCCTAGTCTCCCAAGATAAAATTTCTAACTCTATTTTTGCTAGTAAC
* *
7958780 CAAGATTCAATTGTGTAATTCTTATCTTTAAAATTTTATTCCAATAAATAATTTTTTATACTATG
325 CAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATACTATG
* * * * *
7958845 GTAATAATAATAAATACTAATACTTTAATTTTGATTTTAATATAATATAAGTAAATTTTGATAAT
390 ATAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAAATTTGATAAT
** * * *
7958910 TTTTGCATAATTTTGGTTTTGATAACCTTTGATAAAATTTTGGTAGCCTTCTATATAATTTTGGT
455 TTTTATATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATTTTGGT
*
7958975 AACTTATAATATAAT
520 AACTTATGATATAAT
* * * * * *
7958990 TTTAGTAA-TCATCGAT-CTAATTTTTGTAATTTTTTATAAAATTTTGCTAACTTTTTTATATAA
1 TTTGGTAACT-ATTGATAC-AATTTTGGTAATTTTTTATAAAATTTTGGTAACTTTTTGATGTAA
* * * * * *
7959053 TTTTAATAATATTTTGATAACTTATGATATACTTTTGGTAATTATTTATAAATTTTGCGTCATAA
64 TTTTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCA
* * * * * * * * * *
7959118 TATATTTAACAATAGATTTTTATA-AAAAAACACAGATTCAGTTTTAGTATTAGATAATTTT-TT
129 TATATTTAATAATAGATTCTTATAGGAAAGA-GCGGGTTCAGTTCTATTATAAGATAATTTTCTT
* *
7959181 TATT-T--AATAACATTATTGTTTCATTTAAATTTATAA-TTTT-TTCACTAAATTTTTTTGTTA
193 T-TTATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTA
* * * * * *
7959241 AATAAGTTTATCG-ATGTTTATCTTAGTCTCTCAA-TTAAAATTTCCTAACTCTATTTTTGCTAG
257 AATAGGTTTATGGTAAGTTTATCCTAGTCTCCCAAGATAAAATTT-CTAACTCTATTTTTGCTAG
*
7959304 TAACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAACTCATTCCAAT-AATAATTTTTTATAC
321 TAACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATAC
* * * *
7959368 TACGAGAATAATGATAAATACTAATAATTTAATTTTGATTTTAATGTAATATAAGTAAAATTTGA
386 TATGATAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAAATTTGA
* * * * * *
7959433 TAATTTTTATATAATTTTAATTTTGATAAACTTTCAAAAAAATTTGGTAACCTTCTATATAATTT
451 TAATTTTTATATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATTT
* * *
7959498 TGGTAAC-CATCGTTACAA-
516 TGGTAACTTAT-GATATAAT
* * * *
7959516 -TT--T---TA--G-T--AA-TTT-CTAA-----T-T-AAATTTTTGAAACCTTTTGATGTAATT
1 TTTGGTAACTATTGATACAATTTTGGTAATTTTTTATAAAATTTTGGTAACTTTTTGATGTAATT
* * *
7959561 TTAG-AATCTTTTAATAACTTATGATATACTTTGGGTAATTATTGATAAAATTTGTGTTATCATA
66 TTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCATA
* ** * *
7959625 TATTTAACAATAGATTCTTATAGGAAAGTA-CAAGTTCAGTTCTAATATAATATAATTTTCTTTT
131 TATTTAATAATAGATTCTTATAGGAAAG-AGCGGGTTCAGTTCTATTATAAGATAATTTTCTTTT
* *
7959689 TATACAATAACATTAATGTTTTATTTAAATTT-GAAATTTTTGTTCACTAAATTTTTTTATTAAA
195 TATACAATAACATTATTGTTTCATTTAAATTTAG-AATTTTTGTTCACTAAATTTTTTTATTAAA
* ** * ** ** *
7959753 CAATTTTATGGTATGTTTATCCTAAACTCTTTAAGATAAAATTTCT-AC-CTTTTTTTAGCTAGT
259 TAGGTTTATGGTAAGTTTATCCTAGTCTC-CCAAGATAAAATTTCTAACTCTATTTTT-GCTAGT
* *
7959816 AACCAAGATTCAATTATGCT-ATTCTTTTCTTTAAAAATTCATTCCAATAAATAATTTTTTATAC
322 AACCAAGATTCAATTGTG-TAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATAC
* *
7959880 TATGATAATAATGATAAATACTAATATTTTAATTTT-A-----ATATAATTATAAGTAAAATTTA
386 TATGATAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAA-TATAAGTAAAATTTG
* * * *
7959939 ATAATTATTATATAAGTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTCTACATAATT
450 ATAATTTTTATATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATT
*
7960004 TTGGTAACTTATTATATAAT
515 TTGGTAACTTATGATATAAT
* *
7960024 TTTGATAACTTATT-ATATAATTTTGATAACCATTGGTAAAATTTTAGTAATTTCTGATAAAATT
1 TTTGGTAAC-TATTGATACAA---T--T-----TTGGT--AA---T--T--TTT-T-ATAAAATT
* * * **
7960088 TTGGTAA-TCTTTTAATGAAATTTTAGTAATTTTTTGATAACTTATGATATA-TTTTTATAATTA
44 TTGGTAACT-TTTTGATGTAATTTTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTA
* * * * **** *
7960151 GTGACAAAATTT-T-T-GTC--ATATTTAATAATAGATTCTTATGGGAAAGCA-TAATTTCAATT
108 TTGATAAAATTTGTGTCATCATATATTTAATAATAGATTCTTATAGGAAAG-AGCGGGTTCAGTT
* *
7960210 CTAGTATAAGATAA-TTTCTTTTTTATAGAATAACATTATTGTTTCATTTAAATTTAGAATTTTT
172 CTATTATAAGATAATTTTC-TTTTTATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTT
* * *
7960274 GTTCACTAAA-ATTTTTATTAAATAAGTTTATGGTAAGTTTATCCTAGTCTCCCAAGATAGAATT
236 GTTCACTAAATTTTTTTATTAAATAGGTTTATGGTAAGTTTATCCTAGTCTCCCAAGATAAAATT
* * *
7960338 TCTAACTCTATTTTTGCTAGTAACTAAGATTCAACTATGTAATTCTTATCTTTAAAAATTCATTC
301 TCTAACTCTATTTTTGCTAGTAACCAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTC
* *
7960403 CAATAAATAATTTTTTTATATTATGATAATAATGATAATTACTAATAATTTAATTTTGATTTTGA
366 CAATAAATAA-TTTTTTATACTATGATAATAATGATAAATACTAATAATTTAATTTTGATTTTGA
* *
7960468 TATAATGTAAGTAAAATTTGATAATTTTTATATAGTTTTGA-TTTGATAACCTTTGATAAAATTT
430 TATAATATAAGTAAAATTTGATAATTTTTATATAATTTTGATTTTGATAACCTTTGATAAAATTT
*
7960532 TGGTAAGCTTTTATATAATTTTGGTAACTTATGATATAAT
495 TGGTAACCTTTTATATAATTTTGGTAACTTATGATATAAT
* * *
7960572 TTT-G---CTA---AT----TTCT-G---------ATAAAATTTTGGAAACATTTTGATGTAATT
1 TTTGGTAACTATTGATACAATTTTGGTAATTTTTTATAAAATTTTGGTAACTTTTTGATGTAATT
* * * * * * * *
7960616 TTAGTAATCATTTAATAACTTATTATATATTTTTTGTAATTATTGACAAAATTTGTATAATCATA
66 TTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCATA
* * *** * *** **
7960681 TTTTTAATAATAGATTCTTATAGGAAAGCGCAATTTCAATTCTGGAATAAGATAAAAATT-TTTT
131 TATTTAATAATAGATTCTTATAGGAAAGAGCGGGTTCAGTTCTATTATAAGAT-AATTTTCTTTT
* * *
7960745 TATACAATAACATTATTGTTTTATTTAAATTCAAAATTTTTGTTCACTAAATTTTTTTATTAAAT
195 TATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAAT
** * *
7960810 AGGTTTATGACAAGTTTATCCTAATCTCCCAAGATAAAATTTTTAACTCTATTTTTGCTAGTAAC
260 AGGTTTATGGTAAGTTTATCCTAGTCTCCCAAGATAAAATTTCTAACTCTATTTTTGCTAGTAAC
* *
7960875 CAAGATTCAATTTTGTAATTCTTATCTTTAAAAATTCATTCCAAAAAATAATTTTTTATACTATG
325 CAAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATACTATG
7960940 ATAATAATGATAAATA
390 ATAATAATGATAAATA
7960956 TTGCAGACAC
Statistics
Matches: 5842, Mismatches: 1106, Indels: 781
0.76 0.14 0.10
Matches are distributed among these distances:
505 98 0.02
506 89 0.02
507 221 0.04
508 64 0.01
509 7 0.00
510 38 0.01
511 72 0.01
512 225 0.04
513 177 0.03
514 60 0.01
515 8 0.00
516 15 0.00
517 8 0.00
518 8 0.00
519 9 0.00
520 3 0.00
521 12 0.00
522 5 0.00
523 9 0.00
524 5 0.00
525 250 0.04
526 199 0.03
527 412 0.07
528 266 0.05
529 176 0.03
530 239 0.04
531 156 0.03
532 635 0.11
533 830 0.14
534 212 0.04
535 26 0.00
536 16 0.00
537 15 0.00
538 14 0.00
539 16 0.00
540 22 0.00
541 14 0.00
542 34 0.01
543 119 0.02
544 165 0.03
545 55 0.01
546 91 0.02
547 10 0.00
548 67 0.01
549 82 0.01
550 29 0.00
551 12 0.00
552 13 0.00
553 13 0.00
554 24 0.00
555 42 0.01
556 31 0.01
557 14 0.00
558 3 0.00
559 18 0.00
560 13 0.00
561 47 0.01
562 14 0.00
563 5 0.00
564 17 0.00
565 31 0.01
566 54 0.01
567 16 0.00
568 5 0.00
572 3 0.00
573 1 0.00
574 2 0.00
575 1 0.00
576 8 0.00
577 1 0.00
578 6 0.00
579 3 0.00
580 38 0.01
581 8 0.00
582 17 0.00
583 3 0.00
584 2 0.00
585 2 0.00
587 8 0.00
588 20 0.00
589 7 0.00
590 8 0.00
591 3 0.00
592 6 0.00
593 3 0.00
594 5 0.00
595 8 0.00
596 14 0.00
597 10 0.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.47
Consensus pattern (534 bp):
TTTGGTAACTATTGATACAATTTTGGTAATTTTTTATAAAATTTTGGTAACTTTTTGATGTAATT
TTAGTAATCTTTTGATAACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCATA
TATTTAATAATAGATTCTTATAGGAAAGAGCGGGTTCAGTTCTATTATAAGATAATTTTCTTTTT
ATACAATAACATTATTGTTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAATA
GGTTTATGGTAAGTTTATCCTAGTCTCCCAAGATAAAATTTCTAACTCTATTTTTGCTAGTAACC
AAGATTCAATTGTGTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATACTATGA
TAATAATGATAAATACTAATAATTTAATTTTGATTTTGATATAATATAAGTAAAATTTGATAATT
TTTATATAATTTTGATTTTGATAACCTTTGATAAAATTTTGGTAACCTTTTATATAATTTTGGTA
ACTTATGATATAAT
Found at i:7954688 original size:21 final size:20
Alignment explanation
Indices: 7954645--7954699 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
7954635 CATTTAATAA
* *
7954645 AATTTTGATAACCTTCTATAT
1 AATTTTGATAA-CTTATACAT
7954666 AATTTTGATAACTTATAACAT
1 AATTTTGATAACTTAT-ACAT
*
7954687 AATTTTGGTAACT
1 AATTTTGATAACT
7954700 ATTTATACAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 4 0.13
21 26 0.87
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (20 bp):
AATTTTGATAACTTATACAT
Found at i:7954747 original size:22 final size:22
Alignment explanation
Indices: 7954687--7954761 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
7954677 CTTATAACAT
* * *
7954687 AATTTTGGTAAC-TATTTATAC
1 AATTTTAGTAACTTTTTTATAA
*
7954708 AATTTTGGTAA-TTTTTTATAA
1 AATTTTAGTAACTTTTTTATAA
*
7954729 AATTTTAGTAACTTTTTTATAT
1 AATTTTAGTAACTTTTTTATAA
7954751 AATTTTAGTAA
1 AATTTTAGTAA
7954762 TCATTTGATA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
21 28 0.58
22 20 0.42
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.53
Consensus pattern (22 bp):
AATTTTAGTAACTTTTTTATAA
Found at i:7955351 original size:21 final size:21
Alignment explanation
Indices: 7955296--7955352 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
7955286 TGTGATATTC
* *
7955296 TTTTGGTAACTATTTATACAA
1 TTTTGGTAACTTTTTATAAAA
* * *
7955317 TTTTGATAATTTTTTGTAAAA
1 TTTTGGTAACTTTTTATAAAA
7955338 TTTTGGTAACTTTTT
1 TTTTGGTAACTTTTT
7955353 TATGTAATTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.28, C:0.05, G:0.11, T:0.56
Consensus pattern (21 bp):
TTTTGGTAACTTTTTATAAAA
Found at i:7955376 original size:96 final size:96
Alignment explanation
Indices: 7955194--7955415 Score: 286
Period size: 96 Copynumber: 2.3 Consensus size: 96
7955184 GTAATCTCCT
* * *
7955194 ATATAATTTTAGTAACCATTAATACAATTTCGCTAATTTCTGATAAAATTTTGGTAACTTTTTTA
1 ATATATTTTTAGTAACTATTAATACAATTTCGATAATTTCTGATAAAATTTTGGTAACTTTTTTA
* *
7955259 TGTAATTTTAGTAACCTTTTGATAACTTGTG
66 TGTAATTTTAGTAACCATTTGATAACTTATG
* * * *
7955290 ATAT-TCTTTTGGTAACTATTTATACAATTTTGATAATTTTTTG-TAAAATTTTGGTAACTTTTT
1 ATATAT-TTTTAGTAACTATTAATACAATTTCGATAA-TTTCTGATAAAATTTTGGTAACTTTTT
* *
7955353 TATGTAATTTTAGTAATCATTTGATAAGTTATG
64 TATGTAATTTTAGTAACCATTTGATAACTTATG
* * *
7955386 ATATATTTTTTGTAATTATTAATAAAATTT
1 ATATATTTTTAGTAACTATTAATACAATTT
7955416 GTGTCATTAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
96 102 0.94
97 6 0.06
ACGTcount: A:0.32, C:0.07, G:0.10, T:0.51
Consensus pattern (96 bp):
ATATATTTTTAGTAACTATTAATACAATTTCGATAATTTCTGATAAAATTTTGGTAACTTTTTTA
TGTAATTTTAGTAACCATTTGATAACTTATG
Found at i:7955814 original size:21 final size:22
Alignment explanation
Indices: 7955780--7955839 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 22
7955770 TGACAACCTT
* **
7955780 TGATA-AAATTTGGTAACCTCC
1 TGATATAATTTTGGTAACCTAA
7955801 T-ATATAATTTTGGTAA-CTAA
1 TGATATAATTTTGGTAACCTAA
7955821 TGATATAATTTTGGTAACC
1 TGATATAATTTTGGTAACC
7955840 ATTAATACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
20 6 0.18
21 26 0.79
22 1 0.03
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (22 bp):
TGATATAATTTTGGTAACCTAA
Found at i:7955851 original size:21 final size:21
Alignment explanation
Indices: 7955806--7955858 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
7955796 CCTCCTATAT
* * *
7955806 AATTTTGGTAACTAATGATAT
1 AATTTTGGTAACCAATAATAC
*
7955827 AATTTTGGTAACCATTAATAC
1 AATTTTGGTAACCAATAATAC
*
7955848 AATTTCGGTAA
1 AATTTTGGTAA
7955859 TTTTTGATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (21 bp):
AATTTTGGTAACCAATAATAC
Found at i:7956313 original size:16 final size:16
Alignment explanation
Indices: 7956284--7956316 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7956274 ATTTGATAAG
7956284 TTTTGCATAATTTTGA
1 TTTTGCATAATTTTGA
7956300 TTTTG-ATAACTTTTGA
1 TTTTGCATAA-TTTTGA
7956316 T
1 T
7956317 AAAATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.24, C:0.06, G:0.12, T:0.58
Consensus pattern (16 bp):
TTTTGCATAATTTTGA
Found at i:7956325 original size:21 final size:21
Alignment explanation
Indices: 7956299--7956442 Score: 71
Period size: 21 Copynumber: 6.8 Consensus size: 21
7956289 CATAATTTTG
7956299 ATTTTGATAACTTTTGATAAA
1 ATTTTGATAACTTTTGATAAA
* * * *
7956320 ATTTTGGTAACTTATAATATA
1 ATTTTGATAACTTTTGATAAA
* ** **
7956341 ATTTT-ACATACCATTGATCCA
1 ATTTTGATA-ACTTTTGATAAA
*
7956362 ATTTTGGTAA-TTTCTGATAAA
1 ATTTTGATAACTTT-TGATAAA
* **
7956383 ATTTTGATAACCTTTTTATGTA
1 ATTTTGATAA-CTTTTGATAAA
7956405 ATTTT-AGTAATCTTTTGAT-AA
1 ATTTTGA-TAA-CTTTTGATAAA
* *
7956426 CTTATGATATACTTTTG
1 ATTTTGATA-ACTTTTG
7956443 GTAATTATTT
Statistics
Matches: 88, Mismatches: 27, Indels: 16
0.67 0.21 0.12
Matches are distributed among these distances:
20 2 0.02
21 61 0.69
22 22 0.25
23 3 0.03
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.49
Consensus pattern (21 bp):
ATTTTGATAACTTTTGATAAA
Found at i:7956831 original size:21 final size:21
Alignment explanation
Indices: 7956805--7956878 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
7956795 ATATAATTTT
*
7956805 AATTTTGATAACCTTTCATAA
1 AATTTTGGTAACCTTTCATAA
* *
7956826 AATTTTGGTAACCTTTTATAT
1 AATTTTGGTAACCTTTCATAA
* *
7956847 AATTTTGGTAA-CTTATGATAT
1 AATTTTGGTAACCTT-TCATAA
7956868 AATTTTGGTAA
1 AATTTTGGTAA
7956879 GCATTGGTAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 3 0.06
21 45 0.94
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (21 bp):
AATTTTGGTAACCTTTCATAA
Found at i:7956872 original size:42 final size:41
Alignment explanation
Indices: 7956804--7956937 Score: 108
Period size: 42 Copynumber: 3.2 Consensus size: 41
7956794 TATATAATTT
* * *
7956804 TAATTTTGATAACCTTTCATAAAATTTTGGTAACCTTTTATA
1 TAATTTTGGTAA-CTTTAATATAATTTTGGTAACCTTTTATA
* * * **
7956846 TAATTTTGGTAACTTATGATATAATTTTGGTAAGCATTGGTA
1 TAATTTTGGTAACTT-TAATATAATTTTGGTAACCTTTTATA
* * * *
7956888 CAATTTTGGTAATTTCTAAT-TAAATTTTTGTAACCTTTTGATG
1 TAATTTTGGTAACTT-TAATAT-AATTTTGGTAACCTTTT-ATA
7956931 TAATTTT
1 TAATTTT
7956938 AATAATTTTT
Statistics
Matches: 71, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
41 4 0.06
42 60 0.85
43 7 0.10
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.49
Consensus pattern (41 bp):
TAATTTTGGTAACTTTAATATAATTTTGGTAACCTTTTATA
Found at i:7957396 original size:21 final size:21
Alignment explanation
Indices: 7957372--7957424 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
7957362 CCTTTTATAT
7957372 AATTTTGGTAACTTA-TGAAAC
1 AATTTTGGTAAC-TACTGAAAC
*
7957393 AATTTTGGTAACTACTGACAC
1 AATTTTGGTAACTACTGAAAC
*
7957414 AATTTTAGTAA
1 AATTTTGGTAA
7957425 TTTTTTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (21 bp):
AATTTTGGTAACTACTGAAAC
Found at i:7957451 original size:21 final size:22
Alignment explanation
Indices: 7957414--7957478 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
7957404 CTACTGACAC
*
7957414 AATTTTAGTAAT-TTTTTATAA
1 AATTTTAGTAATCTTTTGATAA
* **
7957435 AATTTTAGTAAGCTTTTGATGT
1 AATTTTAGTAATCTTTTGATAA
*
7957457 ACTTTTAGTAATCTTTTGATAA
1 AATTTTAGTAATCTTTTGATAA
7957479 CTTATTATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
21 11 0.31
22 24 0.69
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (22 bp):
AATTTTAGTAATCTTTTGATAA
Found at i:7957982 original size:21 final size:21
Alignment explanation
Indices: 7957925--7958010 Score: 57
Period size: 21 Copynumber: 4.0 Consensus size: 21
7957915 AATATAATAT
* * *
7957925 AATTTTCGTAACTATTTATAC
1 AATTTTGGTAACTTTTTATAA
* *
7957946 AA-TTCGGTTAATTTTTTATAA
1 AATTTTGG-TAACTTTTTATAA
**
7957967 AATTTTGGTAACTTTTTGATGT
1 AATTTTGGTAACTTTTT-ATAA
* *
7957989 AATTTTAGTAAGTTTTTTATAA
1 AATTTTGGTAA-CTTTTTATAA
7958011 CTTATGATAT
Statistics
Matches: 48, Mismatches: 13, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
20 3 0.06
21 22 0.46
22 18 0.38
23 5 0.10
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.52
Consensus pattern (21 bp):
AATTTTGGTAACTTTTTATAA
Found at i:7958940 original size:26 final size:26
Alignment explanation
Indices: 7958900--7958953 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
7958890 TATAAGTAAA
**
7958900 TTTTGATAATTTTTGCAT-AATTTTGG
1 TTTTGATAACCTTTG-ATAAATTTTGG
7958926 TTTTGATAACCTTTGATAAAATTTTGG
1 TTTTGATAACCTTTGAT-AAATTTTGG
7958953 T
1 T
7958954 AGCCTTCTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 2 0.08
26 13 0.54
27 9 0.38
ACGTcount: A:0.26, C:0.06, G:0.15, T:0.54
Consensus pattern (26 bp):
TTTTGATAACCTTTGATAAATTTTGG
Found at i:7958959 original size:21 final size:21
Alignment explanation
Indices: 7958926--7958977 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
7958916 ATAATTTTGG
*
7958926 TTTTGATAACCTT-TGATAAAA
1 TTTTGGTAACCTTCT-ATAAAA
* *
7958947 TTTTGGTAGCCTTCTATATAA
1 TTTTGGTAACCTTCTATAAAA
7958968 TTTTGGTAAC
1 TTTTGGTAAC
7958978 TTATAATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (21 bp):
TTTTGGTAACCTTCTATAAAA
Found at i:7958986 original size:21 final size:20
Alignment explanation
Indices: 7958945--7958997 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
7958935 CCTTTGATAA
* *
7958945 AATTTTGGTAGCCTTCTATAT
1 AATTTTGGTA-ACTTATATAT
7958966 AATTTTGGTAACTTATAATAT
1 AATTTTGGTAACTTAT-ATAT
*
7958987 AATTTTAGTAA
1 AATTTTGGTAA
7958998 TCATCGATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 4 0.14
21 24 0.86
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (20 bp):
AATTTTGGTAACTTATATAT
Found at i:7959047 original size:22 final size:20
Alignment explanation
Indices: 7959011--7959056 Score: 65
Period size: 22 Copynumber: 2.2 Consensus size: 20
7959001 TCGATCTAAT
7959011 TTTTGTAATTTTTTATAAAA
1 TTTTGTAATTTTTTATAAAA
*
7959031 TTTTGCTAACTTTTTTATATAA
1 TTTTG-TAA-TTTTTTATAAAA
7959053 TTTT
1 TTTT
7959057 AATAATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.22
21 3 0.13
22 15 0.65
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (20 bp):
TTTTGTAATTTTTTATAAAA
Found at i:7959067 original size:22 final size:21
Alignment explanation
Indices: 7959007--7959067 Score: 59
Period size: 22 Copynumber: 2.9 Consensus size: 21
7958997 ATCATCGATC
**
7959007 TAATTTTTGTAATTTTTTATA
1 TAATTTTAATAATTTTTTATA
* **
7959028 AAATTTTGCTAACTTTTTTATA
1 TAATTTTAATAA-TTTTTTATA
*
7959050 TAATTTTAATAATATTTT
1 TAATTTTAATAATTTTTT
7959068 GATAACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
21 14 0.44
22 18 0.56
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (21 bp):
TAATTTTAATAATTTTTTATA
Found at i:7959517 original size:21 final size:21
Alignment explanation
Indices: 7959475--7959524 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7959465 TTCAAAAAAA
* *
7959475 TTTGGTAACCTTCTATATAAT
1 TTTGGTAACCATCTATACAAT
7959496 TTTGGTAACCATCGT-TACAAT
1 TTTGGTAACCATC-TATACAAT
*
7959517 TTTAGTAA
1 TTTGGTAA
7959525 TTTCTAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (21 bp):
TTTGGTAACCATCTATACAAT
Found at i:7959985 original size:21 final size:21
Alignment explanation
Indices: 7959959--7960090 Score: 83
Period size: 21 Copynumber: 6.3 Consensus size: 21
7959949 TATAAGTTTG
7959959 ATTTTGATAACCTT-TGATAAA
1 ATTTTGATAA-CTTATGATAAA
* * * *
7959980 ATTTTGGTAACCTTCT-ACATA
1 ATTTTGATAA-CTTATGATAAA
* * *
7960001 ATTTTGGTAACTTATTATATA
1 ATTTTGATAACTTATGATAAA
* *
7960022 ATTTTGATAACTTATTATATA
1 ATTTTGATAACTTATGATAAA
* *
7960043 ATTTTGATAAC-CATTGGTAAA
1 ATTTTGATAACTTA-TGATAAA
* *
7960064 ATTTT-AGTAATTTCTGATAAA
1 ATTTTGA-TAACTTATGATAAA
7960085 ATTTTG
1 ATTTTG
7960091 GTAATCTTTT
Statistics
Matches: 91, Mismatches: 14, Indels: 11
0.78 0.12 0.09
Matches are distributed among these distances:
20 6 0.07
21 84 0.92
22 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.47
Consensus pattern (21 bp):
ATTTTGATAACTTATGATAAA
Found at i:7960067 original size:42 final size:42
Alignment explanation
Indices: 7959959--7960068 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
7959949 TATAAGTTTG
* *
7959959 ATTTTGATAACCTTTGATAAAATTTTGGTAACCTTCTACATA
1 ATTTTGATAACCATTGATAAAATTTTGATAACCTTCTACATA
* * * * *
7960001 ATTTTGGTAACTTATT-ATATAATTTTGATAA-CTTATTATATA
1 ATTTTGATAAC-CATTGATAAAATTTTGATAACCTT-CTACATA
*
7960043 ATTTTGATAACCATTGGTAAAATTTT
1 ATTTTGATAACCATTGATAAAATTTT
7960069 AGTAATTTCT
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
41 6 0.11
42 46 0.85
43 2 0.04
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (42 bp):
ATTTTGATAACCATTGATAAAATTTTGATAACCTTCTACATA
Found at i:7960094 original size:21 final size:21
Alignment explanation
Indices: 7960060--7960119 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
7960050 TAACCATTGG
*
7960060 TAAAATTTTAGTAATTTCTGA
1 TAAAATTTTAGTAATTTCTAA
* *
7960081 TAAAATTTTGGTAATCTTTTAA
1 TAAAATTTTAGTAAT-TTCTAA
*
7960103 TGAAATTTTAGTAATTT
1 TAAAATTTTAGTAATTT
7960120 TTTGATAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 16 0.48
22 17 0.52
ACGTcount: A:0.37, C:0.03, G:0.10, T:0.50
Consensus pattern (21 bp):
TAAAATTTTAGTAATTTCTAA
Found at i:7960144 original size:43 final size:43
Alignment explanation
Indices: 7960062--7960144 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
7960052 ACCATTGGTA
* *
7960062 AAATTTTAGTAATTTCTGATAAAATTTTGGTAATCTTTTAATG
1 AAATTTTAGTAATTTCTGATAAAATTATGATAATCTTTTAATG
* *
7960105 AAATTTTAGTAATTTTTTGAT-AACTTATGATATAT-TTTTA
1 AAATTTTAGTAA-TTTCTGATAAAATTATGATA-ATCTTTTA
7960145 TAATTAGTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
43 25 0.74
44 9 0.26
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.52
Consensus pattern (43 bp):
AAATTTTAGTAATTTCTGATAAAATTATGATAATCTTTTAATG
Found at i:7960533 original size:21 final size:21
Alignment explanation
Indices: 7960521--7960597 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
7960511 TGATAACCTT
7960521 TGATAAAATTTTGGTAAGCTT-
1 TGATAAAATTTTGGTAA-CTTA
* *
7960542 TTATATAATTTTGGTAACTTA
1 TGATAAAATTTTGGTAACTTA
* * * *
7960563 TGATATAATTTTGCTAATTTC
1 TGATAAAATTTTGGTAACTTA
7960584 TGATAAAATTTTGG
1 TGATAAAATTTTGG
7960598 AAACATTTTG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 3 0.06
21 44 0.94
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.48
Consensus pattern (21 bp):
TGATAAAATTTTGGTAACTTA
Found at i:7962583 original size:60 final size:58
Alignment explanation
Indices: 7962420--7962700 Score: 273
Period size: 60 Copynumber: 4.8 Consensus size: 58
7962410 GCTTTTATAC
* * **
7962420 AAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTCTTGGTAATTTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTT-TTTTTAA-TTTTA-TTTT
* * * *
7962481 AAGAAAAATTGGTACGTTCAA-TTTTTCCTTTAAAAATA-TTTTTCTTCAAGTTTTATTTT
1 AAGAAAAATTGATACTTTCAACTTTTT-C-TTAAAAATATTTTTTTTTTAA-TTTTATTTT
* * * * * *
7962540 AAGGAAAATTGATACCTTCAA-TTTTTCTAAAAAATA-TTTTTTTTAAATTTTGTTGTC
1 AAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTTTTAATTTTATT-TT
* * * **
7962597 AAGAAAAATTGATACTTTTAACTTTTCCTTTAAATATATTTTTTTAATAATTTTATTTT
1 AAGAAAAATTGATACTTTCAACTTTTTC-TTAAAAATATTTTTTTTTTAATTTTATTTT
*
7962656 CAAGAAAAATTGATACTTTCAACCTTTTCTTAAAAATATTTTTTT
1 -AAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTT
7962701 CAAAAAAATT
Statistics
Matches: 181, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
56 6 0.03
57 36 0.20
58 6 0.03
59 50 0.28
60 51 0.28
61 24 0.13
62 8 0.04
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (58 bp):
AAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTTTTAATTTTATTTT
Found at i:7962628 original size:116 final size:119
Alignment explanation
Indices: 7962419--7962700 Score: 356
Period size: 116 Copynumber: 2.4 Consensus size: 119
7962409 TGCTTTTATA
* * * * *
7962419 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTCTTGGTAATTTTTATTTTTAAG
1 CAAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTT-TT-GTAAATTTTATTGTCAAG
* * * *
7962484 AAAAATTGGTACGTTCAATTTTTCCTTTAAAAATATTTTTCTTCA-AGTTTTATTTT
64 AAAAATTGATACGTTCAACTTTTCCTTTAAAAATATTTTT-TTAATAATTTTATTTT
* * * *
7962540 -AAGGAAAATTGATACCTTCAA-TTTTTCTAAAAAATATTTTTTT-TAAATTTTGTTGTCAAGAA
1 CAAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTGTAAATTTTATTGTCAAGAA
* * *
7962602 AAATTGATACTTTTAACTTTTCCTTTAAATATATTTTTTTAATAATTTTATTTT
66 AAATTGATACGTTCAACTTTTCCTTTAAAAATATTTTTTTAATAATTTTATTTT
*
7962656 CAAGAAAAATTGATACTTTCAACCTTTTCTTAAAAATATTTTTTT
1 CAAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTT
7962701 CAAAAAAATT
Statistics
Matches: 138, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
115 3 0.02
116 58 0.42
117 19 0.14
118 22 0.16
119 17 0.12
120 19 0.14
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (119 bp):
CAAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTGTAAATTTTATTGTCAAGAA
AAATTGATACGTTCAACTTTTCCTTTAAAAATATTTTTTTAATAATTTTATTTT
Found at i:7962715 original size:60 final size:58
Alignment explanation
Indices: 7962419--7962705 Score: 310
Period size: 59 Copynumber: 4.8 Consensus size: 58
7962409 TGCTTTTATA
* * *
7962419 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTCTTGGTAATTTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTT-TT--AAAATTTTATTTT
* * * * * *
7962480 TAAGAAAAATTGGTACGTTCAATTTTTCCTTTAAAAATATTTTTCTTCAAGTTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCC-TTAAAAATATTTTT-TTAAAATTTTATTTT
* * * * * * *
7962540 -AAGGAAAATTGATACCTTCAA-TTTTTCTAAAAAATATTTTTTTTAAATTTTGTTGT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTAAAATTTTATTTT
* *
7962596 CAAGAAAAATTGATACTTTTAACTTTTCCTTTAAATATATTTTTTTAATAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCC-TTAAAAATATTTTTTTAA-AATTTTATTTT
7962656 CAAGAAAAATTGATACTTTCAACCTTTT-CTTAAAAATATTTTTTTCAAAA
1 CAAGAAAAATTGATACTTTCAA-CTTTTCCTTAAAAATATTTTTTT-AAAA
7962706 AAATTATTTT
Statistics
Matches: 192, Mismatches: 27, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
56 11 0.06
57 31 0.16
58 10 0.05
59 50 0.26
60 44 0.23
61 30 0.16
62 16 0.08
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.48
Consensus pattern (58 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTAAAATTTTATTTT
Found at i:7963316 original size:23 final size:22
Alignment explanation
Indices: 7963282--7963324 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7963272 TTATAAATTT
*
7963282 TCCAAAATTTTTCAAAAAAAAAC
1 TCCAAAAATTTT-AAAAAAAAAC
*
7963305 TCCAAAAATTTTATAAAAAA
1 TCCAAAAATTTTAAAAAAAA
7963325 TCCTAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (22 bp):
TCCAAAAATTTTAAAAAAAAAC
Found at i:7963732 original size:22 final size:21
Alignment explanation
Indices: 7963691--7963748 Score: 55
Period size: 24 Copynumber: 2.7 Consensus size: 21
7963681 ATATCCTATT
* *
7963691 ATCAAAAAATAAAATAAAT-A
1 ATCAAAAAAAAAAACAAATAA
7963711 ATCAAAAAAAAAAACCAGAATAAA
1 ATCAAAAAAAAAAA-CA-AAT-AA
*
7963735 ATAAAAAAAAAAAA
1 ATCAAAAAAAAAAA
7963749 TAAACAGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 13 0.42
21 1 0.03
22 3 0.10
24 14 0.45
ACGTcount: A:0.79, C:0.07, G:0.02, T:0.12
Consensus pattern (21 bp):
ATCAAAAAAAAAAACAAATAA
Found at i:7963946 original size:16 final size:16
Alignment explanation
Indices: 7963897--7963962 Score: 53
Period size: 16 Copynumber: 4.2 Consensus size: 16
7963887 TTTAGTTTCA
*
7963897 CAAGAATTCAAACTTG
1 CAAGAATTCAAATTTG
* ** *
7963913 CAAGATTTCAGGTATG
1 CAAGAATTCAAATTTG
*
7963929 CAAGAATTCATATTTG
1 CAAGAATTCAAATTTG
**
7963945 CAAG-ATTCGCATTTG
1 CAAGAATTCAAATTTG
7963960 CAA
1 CAA
7963963 ATTACAAGAC
Statistics
Matches: 39, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
15 12 0.31
16 27 0.69
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (16 bp):
CAAGAATTCAAATTTG
Found at i:7964199 original size:114 final size:114
Alignment explanation
Indices: 7964057--7964394 Score: 491
Period size: 114 Copynumber: 3.0 Consensus size: 114
7964047 GGTTCACATT
* *
7964057 CAAGAAATCTTAAAGTTTCACATCTAAGTTCAAATGTTCTCTCTCAAAAATTTAGAGATTCGCAT
1 CAAGAAATCTTAAAGTTTCACATCTAAGTTCAAAGGTCCTCTCTCAAAAATTTAGAGATTCGCAT
* * * *
7964122 CCAAAAGTTGAATTCAAAGCTTTTTGCTTGAATTTTAGAGATTCATATC
66 CCAAAAGTTGAATTCAAAGCTTTTCGTTTGAATTTTGGAGATTCAAATC
* * * *
7964171 CAAGAAATTTTAGAGTTTCACATCTAAGTTCAAAGGTCCT-TATTCAAAAATTTAGAGATTCGTA
1 CAAGAAATCTTAAAGTTTCACATCTAAGTTCAAAGGTCCTCT-CTCAAAAATTTAGAGATTCGCA
* *
7964235 TCCAAAAGTTGAGTGCAAAGCTTTTCGTTTGAATTTTGGAGATTCAAATC
65 TCCAAAAGTTGAATTCAAAGCTTTTCGTTTGAATTTTGGAGATTCAAATC
* * * *
7964285 CAAGAAATCTTAAAGTTTTACATCTAAATTCAAAGGTCCTCACTCAAAAATTTAGAGATTCACAT
1 CAAGAAATCTTAAAGTTTCACATCTAAGTTCAAAGGTCCTCTCTCAAAAATTTAGAGATTCGCAT
*
7964350 TCAAAAGTT-AAGTTCAAAGCTTTTCGTTTGAATTTTGGAGATTCA
66 CCAAAAGTTGAA-TTCAAAGCTTTTCGTTTGAATTTTGGAGATTCA
7964395 CATCTAAAAG
Statistics
Matches: 198, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
113 2 0.01
114 196 0.99
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (114 bp):
CAAGAAATCTTAAAGTTTCACATCTAAGTTCAAAGGTCCTCTCTCAAAAATTTAGAGATTCGCAT
CCAAAAGTTGAATTCAAAGCTTTTCGTTTGAATTTTGGAGATTCAAATC
Found at i:7964491 original size:21 final size:21
Alignment explanation
Indices: 7964465--7964684 Score: 231
Period size: 21 Copynumber: 10.8 Consensus size: 21
7964455 TTCACATCTT
7964465 AAAGATTCTCATTTGAAATTC
1 AAAGATTCTCATTTGAAATTC
7964486 AAAGATTCTCATTTG-AATTC
1 AAAGATTCTCATTTGAAATTC
* * *
7964506 GAAGATTCACA-TT-CAA-T-
1 AAAGATTCTCATTTGAAATTC
* ** * **
7964523 -AA-ATTTTGGGTTTCACACCTC
1 AAAGATTCT-CATTTGA-AATTC
7964544 AAAGATTCTCATTTGAAATTC
1 AAAGATTCTCATTTGAAATTC
*
7964565 AAAGATTATCATTTGAAATTC
1 AAAGATTCTCATTTGAAATTC
* *
7964586 AAAGATTCTCATTTGACACTC
1 AAAGATTCTCATTTGAAATTC
*
7964607 AAAGATTCTTATTTGAAATTC
1 AAAGATTCTCATTTGAAATTC
7964628 AAAGATTCTCATTTGAAATTC
1 AAAGATTCTCATTTGAAATTC
7964649 AAAGATTCTCATTTG-AATTC
1 AAAGATTCTCATTTGAAATTC
* *
7964669 GAAGATTCACATTTGA
1 AAAGATTCTCATTTGA
7964685 CAAATTTTGG
Statistics
Matches: 165, Mismatches: 24, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
15 3 0.02
16 2 0.01
17 2 0.01
18 1 0.01
19 5 0.03
20 33 0.20
21 109 0.66
22 6 0.04
23 4 0.02
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (21 bp):
AAAGATTCTCATTTGAAATTC
Found at i:7965857 original size:10 final size:9
Alignment explanation
Indices: 7965838--7965931 Score: 72
Period size: 9 Copynumber: 10.3 Consensus size: 9
7965828 TTCTCTCTTA
7965838 TTTTCATTT
1 TTTTCATTT
7965847 TTTTCCA-TT
1 TTTT-CATTT
7965856 TTTT-ATTT
1 TTTTCATTT
*
7965864 TATT-ATTT
1 TTTTCATTT
7965872 TTGTTC-TTT
1 TT-TTCATTT
*
7965881 TTGTCTCTTTT
1 TT-T-TCATTT
*
7965892 TTTTTATTT
1 TTTTCATTT
7965901 TTCTTCATTT
1 TT-TTCATTT
7965911 TTTT-ATTT
1 TTTTCATTT
7965919 TTTCTCATTT
1 TTT-TCATTT
7965929 TTT
1 TTT
7965932 CATCCTCTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 17
0.76 0.05 0.18
Matches are distributed among these distances:
7 1 0.01
8 17 0.24
9 28 0.39
10 20 0.28
11 5 0.07
ACGTcount: A:0.10, C:0.11, G:0.02, T:0.78
Consensus pattern (9 bp):
TTTTCATTT
Done.