Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 40 of 125
Found at i:7965901 original size:37 final size:37
Alignment explanation
Indices: 7965854--7965931 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
7965844 TTTTTTTCCA
* *
7965854 TTTTTTA-TTTTATT-ATTTTTGTTCTTTTTGTCTCTTT
1 TTTTTTATTTTTATTCATTTTT-TTATTTTT-TCTCATT
*
7965891 TTTTTTATTTTTCTTCATTTTTTTATTTTTTCTCATT
1 TTTTTTATTTTTATTCATTTTTTTATTTTTTCTCATT
7965928 TTTT
1 TTTT
7965932 CATCCTCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 17 0.47
38 13 0.36
39 6 0.17
ACGTcount: A:0.09, C:0.09, G:0.03, T:0.79
Consensus pattern (37 bp):
TTTTTTATTTTTATTCATTTTTTTATTTTTTCTCATT
Found at i:7965913 original size:18 final size:18
Alignment explanation
Indices: 7965845--7965931 Score: 76
Period size: 19 Copynumber: 4.9 Consensus size: 18
7965835 TTATTTTCAT
7965845 TTTTTTC-CA-TTTTTTA
1 TTTTTTCTCATTTTTTTA
* *
7965861 TTTTAT-T-ATTTTTGTTC
1 TTTTTTCTCATTTTT-TTA
*
7965878 TTTTTGTCTC-TTTTTTTT
1 TTTTT-TCTCATTTTTTTA
7965896 TATTTTTCTTCATTTTTTTA
1 T-TTTTTC-TCATTTTTTTA
7965916 TTTTTTCTCATTTTTT
1 TTTTTTCTCATTTTTT
7965932 CATCCTCTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
15 1 0.02
16 9 0.16
17 6 0.11
18 15 0.26
19 18 0.32
20 8 0.14
ACGTcount: A:0.09, C:0.10, G:0.02, T:0.78
Consensus pattern (18 bp):
TTTTTTCTCATTTTTTTA
Found at i:7968774 original size:39 final size:40
Alignment explanation
Indices: 7968698--7968779 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 40
7968688 AATGATGCAG
*
7968698 ATGCAGAATGTTACATATGACAATGAAAATGATGTATGAT
1 ATGCAAAATGTTACATATGACAATGAAAATGATGTATGAT
7968738 ATGCAAAATGTTACATATGAC-ATGAAAATGATGTATGAT
1 ATGCAAAATGTTACATATGACAATGAAAATGATGTATGAT
7968777 ATG
1 ATG
7968780 ATAATGCAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 21 0.51
40 20 0.49
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (40 bp):
ATGCAAAATGTTACATATGACAATGAAAATGATGTATGAT
Found at i:7968780 original size:18 final size:18
Alignment explanation
Indices: 7968720--7968785 Score: 69
Period size: 18 Copynumber: 3.5 Consensus size: 18
7968710 ACATATGACA
7968720 ATGAAAATGATGTATGAT
1 ATGAAAATGATGTATGAT
** *
7968738 ATGCAAAATGTTACATATGAC
1 ATG-AAAATG--ATGTATGAT
7968759 ATGAAAATGATGTATGAT
1 ATGAAAATGATGTATGAT
*
7968777 ATGATAATG
1 ATGAAAATG
7968786 CAAATGCATA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
18 17 0.45
19 6 0.16
20 6 0.16
21 9 0.24
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.32
Consensus pattern (18 bp):
ATGAAAATGATGTATGAT
Found at i:7969913 original size:32 final size:30
Alignment explanation
Indices: 7969876--7969974 Score: 76
Period size: 31 Copynumber: 3.2 Consensus size: 30
7969866 TTTTCTTGGT
*
7969876 AATTTTTATTTTTAAGAAAAATTGGTACTTTC
1 AATTTTT-TTTTTAAGAAAAATT-ATACTTTC
* * * *
7969908 AATTTTTTCTTTAA-AAATATTTTTC-TTC
1 AATTTTTTTTTTAAGAAAAATTATACTTTC
* *
7969936 AAGTTTTCTTTCTAAGAAAAATTTATACTTTC
1 AA-TTTTTTTTTTAAGAAAAA-TTATACTTTC
*
7969968 AACTTTT
1 AATTTTT
7969975 CTTAAAAAAT
Statistics
Matches: 51, Mismatches: 12, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
28 5 0.10
29 11 0.22
30 10 0.20
31 13 0.25
32 12 0.24
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.53
Consensus pattern (30 bp):
AATTTTTTTTTTAAGAAAAATTATACTTTC
Found at i:7969990 original size:60 final size:59
Alignment explanation
Indices: 7969828--7970183 Score: 389
Period size: 60 Copynumber: 6.0 Consensus size: 59
7969818 GCTTTTATGC
* ** *
7969828 AAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATGTTTTTCTTGGTAATTTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATTTTT-TT-AAAAATTTTATTTTT
* * * * * *
7969889 AAGAAAAATTGGTACTTTCAATTTTTTCTTTAAAAATATTTTTCTT-CAAGTTTTCTTTCT
1 AAGAAAAATTGATACTTTCAA-CTTTTCTTTAAAAATATTTTT-TTAAAAATTTTATTTTT
* * *
7969949 AAGAAAAATTTATACTTTCAACTTTTCTTAAAAAATA-ATTTTTAAAAATTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATTTTTTTAAAAATTTTATTTTT
* * * *
7970007 AAGAAAAATTGATATTTTCAAGTTTT-TTAAAAAATATTTTTTTAAAAATTTT-TGTTGTC
1 AAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATTTTTTTAAAAATTTTAT-TT-TT
* * * *
7970066 AAGGAAAATTGATATTTTCAACTTTTCCTTTAAATATATTTTTTTAAAAATTTTATTTTC
1 AAGAAAAATTGATACTTTCAACTTTT-CTTTAAAAATATTTTTTTAAAAATTTTATTTTT
* * *
7970126 AAGGAAAATTGATACTTTCAACTTTTCATCAAAAATATTTTTTTTAAAAA-TTTATTTT
1 AAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATA-TTTTTTTAAAAATTTTATTTT
7970184 ATATTTTTTC
Statistics
Matches: 257, Mismatches: 29, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
57 13 0.05
58 52 0.20
59 55 0.21
60 68 0.26
61 46 0.18
62 23 0.09
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.50
Consensus pattern (59 bp):
AAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATTTTTTTAAAAATTTTATTTTT
Found at i:7970076 original size:177 final size:180
Alignment explanation
Indices: 7969828--7970183 Score: 427
Period size: 177 Copynumber: 2.0 Consensus size: 180
7969818 GCTTTTATGC
* * *** * *
7969828 AAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATGTTTTTCTTGGTAATTTTTATTTTTAAGA
1 AAGAAAAATTGATACTTTCAACTTTTCTTAAAAAATATTTTTCTTAAAAATTTTTATTGTCAAGA
* * * * * *
7969893 AAAATTGGTACTTTCAATTTTTTCTTTAAAAATATTTTTCTT-CAAGTTTT-CTTTCTAAGAAAA
66 AAAATTGATACTTTCAACTTTTCCTTTAAAAATATTTTT-TTAAAAATTTTATTTTC-AAGAAAA
* *
7969956 ATTTATACTTTCAACTTTTC-TTAAAAA-ATAATTTTTAAAAATTTTATTTTT
129 ATTGATACTTTCAACTTTTCATCAAAAATATAATTTTTAAAAA-TTTATTTTT
* * * *
7970007 AAGAAAAATTGATATTTTCAAGTTTT-TTAAAAAATATTTTT-TTAAAAATTTTTGTTGTCAAGG
1 AAGAAAAATTGATACTTTCAACTTTTCTTAAAAAATATTTTTCTTAAAAATTTTTATTGTCAAGA
* * *
7970070 AAAATTGATATTTTCAACTTTTCCTTTAAATATATTTTTTTAAAAATTTTATTTTCAAGGAAAAT
66 AAAATTGATACTTTCAACTTTTCCTTTAAAAATATTTTTTTAAAAATTTTATTTTCAAGAAAAAT
**
7970135 TGATACTTTCAACTTTTCATCAAAAATATTTTTTTTAAAAATTTATTTT
131 TGATACTTTCAACTTTTCATCAAAAATATAATTTTTAAAAATTTATTTT
7970184 ATATTTTTTC
Statistics
Matches: 149, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
176 2 0.01
177 80 0.54
178 31 0.21
179 36 0.24
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.50
Consensus pattern (180 bp):
AAGAAAAATTGATACTTTCAACTTTTCTTAAAAAATATTTTTCTTAAAAATTTTTATTGTCAAGA
AAAATTGATACTTTCAACTTTTCCTTTAAAAATATTTTTTTAAAAATTTTATTTTCAAGAAAAAT
TGATACTTTCAACTTTTCATCAAAAATATAATTTTTAAAAATTTATTTTT
Found at i:7970279 original size:11 final size:10
Alignment explanation
Indices: 7970261--7970294 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
7970251 ATAAATAAAT
7970261 AATACCAAAA
1 AATACCAAAA
7970271 AATACCCAAAAA
1 AATA-CC-AAAA
7970283 AATACCAAAA
1 AATACCAAAA
7970293 AA
1 AA
7970295 AAAATTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 10 0.45
11 4 0.18
12 8 0.36
ACGTcount: A:0.71, C:0.21, G:0.00, T:0.09
Consensus pattern (10 bp):
AATACCAAAA
Found at i:7970295 original size:11 final size:11
Alignment explanation
Indices: 7970261--7970295 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
7970251 ATAAATAAAT
7970261 AATACC-AAAA
1 AATACCAAAAA
7970271 AATACCCAAAAA
1 AATA-CCAAAAA
7970283 AATACCAAAAA
1 AATACCAAAAA
7970294 AA
1 AA
7970296 AAATTGAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 4 0.17
11 11 0.48
12 8 0.35
ACGTcount: A:0.71, C:0.20, G:0.00, T:0.09
Consensus pattern (11 bp):
AATACCAAAAA
Found at i:7970296 original size:12 final size:12
Alignment explanation
Indices: 7970267--7970296 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7970257 AAATAATACC
*
7970267 AAAAAATACCCA
1 AAAAAATACCAA
7970279 AAAAAATACCAA
1 AAAAAATACCAA
7970291 AAAAAA
1 AAAAAA
7970297 AATTGAAACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.77, C:0.17, G:0.00, T:0.07
Consensus pattern (12 bp):
AAAAAATACCAA
Found at i:7970829 original size:20 final size:20
Alignment explanation
Indices: 7970795--7970838 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7970785 ATTTTCCAGA
*
7970795 AAAAAACTCCAAAAATTCTAT
1 AAAAAACTCCAAAAAATCT-T
*
7970816 AAAAAA-TCCTAAAAATCTT
1 AAAAAACTCCAAAAAATCTT
7970835 AAAA
1 AAAA
7970839 TTACTTCTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 10 0.48
21 6 0.29
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.23
Consensus pattern (20 bp):
AAAAAACTCCAAAAAATCTT
Found at i:7971204 original size:5 final size:5
Alignment explanation
Indices: 7971194--7971257 Score: 58
Period size: 5 Copynumber: 11.8 Consensus size: 5
7971184 TCCTATTTTA
*
7971194 AAAAT AAAAT -AAAT AATAAT AATAAA AAAAT CAAAAAT AAAAACT AAAAT
1 AAAAT AAAAT AAAAT AA-AAT AA-AAT AAAAT --AAAAT -AAAA-T AAAAT
7971244 AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAA
7971258 AACAAACAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
4 4 0.08
5 23 0.44
6 19 0.37
7 6 0.12
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7971219 original size:18 final size:18
Alignment explanation
Indices: 7971196--7971256 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
7971186 CTATTTTAAA
7971196 AATAAAATAAATAATAAT
1 AATAAAATAAATAATAAT
*
7971214 AATAAAA-AAATCAAAAAT
1 AATAAAATAAAT-AATAAT
*
7971232 AA-AAACT-AA-AATAA-
1 AATAAAATAAATAATAAT
7971246 AATAAAATAAA
1 AATAAAATAAA
7971257 AAACAAACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
14 2 0.06
15 8 0.23
16 2 0.06
17 9 0.26
18 14 0.40
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (18 bp):
AATAAAATAAATAATAAT
Found at i:7971258 original size:6 final size:6
Alignment explanation
Indices: 7971192--7971258 Score: 52
Period size: 6 Copynumber: 11.0 Consensus size: 6
7971182 TATCCTATTT
*
7971192 TAAAAA T-AAAA TAAATAA TAATAATA AAAAAA TCAAAAA TAAAAA CT-AAAA
1 TAAAAA TAAAAA TAAA-AA TAA-AA-A TAAAAA T-AAAAA TAAAAA -TAAAAA
7971243 T-AAAA T-AAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA
7971259 ACAAACAATT
Statistics
Matches: 52, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
5 16 0.31
6 17 0.33
7 15 0.29
8 4 0.08
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:7971788 original size:18 final size:18
Alignment explanation
Indices: 7971731--7971810 Score: 58
Period size: 18 Copynumber: 4.6 Consensus size: 18
7971721 CTTTGTTCTT
** *
7971731 GATACATTTGATATGAAG
1 GATACATTTGAGGTAAAG
* *
7971749 GATATATTTGAGG-ATA-
1 GATACATTTGAGGTAAAG
*
7971765 -ATACATTTGTGGTAAAG
1 GATACATTTGAGGTAAAG
* **
7971782 GATACATTTAAGGTGGAG
1 GATACATTTGAGGTAAAG
7971800 GATACATTTGA
1 GATACATTTGA
7971811 AAAGTTAGAG
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
15 10 0.22
16 2 0.04
17 1 0.02
18 33 0.72
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (18 bp):
GATACATTTGAGGTAAAG
Found at i:7971844 original size:18 final size:18
Alignment explanation
Indices: 7971780--7971849 Score: 79
Period size: 18 Copynumber: 3.7 Consensus size: 18
7971770 TTTGTGGTAA
7971780 AGGATACATTT-AAGGTGG
1 AGGATACATTTGAA-GTGG
*
7971798 AGGATACATTTGAAAAGTTAG
1 AGGATACATTTG--AAG-TGG
7971819 AGGATACATTTGAAGTGG
1 AGGATACATTTGAAGTGG
*
7971837 ATGATACATTTGA
1 AGGATACATTTGA
7971850 GATAAATAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
18 25 0.56
19 3 0.07
20 1 0.02
21 16 0.36
ACGTcount: A:0.37, C:0.06, G:0.27, T:0.30
Consensus pattern (18 bp):
AGGATACATTTGAAGTGG
Found at i:7972705 original size:21 final size:21
Alignment explanation
Indices: 7972679--7972738 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
7972669 TTATTTTCAT
*
7972679 TTTTTATAACTTATTTATTTA
1 TTTTTATTACTTATTTATTTA
7972700 TTTTTATTA-TT-TGTTATTTA
1 TTTTTATTACTTAT-TTATTTA
7972720 TTTATTATTAC-TATTTATT
1 TTT-TTATTACTTATTTATT
7972739 AATGTATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
19 1 0.03
20 12 0.35
21 20 0.59
22 1 0.03
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTTATTACTTATTTATTTA
Found at i:7972766 original size:18 final size:18
Alignment explanation
Indices: 7972743--7972807 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
7972733 TTTATTAATG
*
7972743 TATATTTTTATCTGTTAA
1 TATATTTTTATATGTTAA
*
7972761 TATATTTATATAT-TT-A
1 TATATTTTTATATGTTAA
*
7972777 TTTATCTATTTATATGTTAA
1 TATAT-T-TTTATATGTTAA
*
7972797 TATATATTTAT
1 TATATTTTTAT
7972808 TATTATTTAC
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 5 0.14
17 3 0.08
18 22 0.59
19 2 0.05
20 5 0.14
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
TATATTTTTATATGTTAA
Found at i:7972788 original size:20 final size:20
Alignment explanation
Indices: 7972763--7972975 Score: 93
Period size: 17 Copynumber: 11.8 Consensus size: 20
7972753 TCTGTTAATA
7972763 TATTTATATATTTATTTATC
1 TATTTATATATTTATTTATC
* * *
7972783 TATTTATAT-GTTA-ATATA
1 TATTTATATATTTATTTATC
*
7972801 TATTTAT-TA-TTATTTACC
1 TATTTATATATTTATTTATC
7972819 TA-TTATATA-TTATTATTAT-
1 TATTTATATATTTA-T-TTATC
*
7972838 AATTTATATA-TTA-TTAT-
1 TATTTATATATTTATTTATC
*
7972855 TA-TTATA-ATTTATCTAT-
1 TATTTATATATTTATTTATC
7972872 TATTT-T-TATTTATTTATC
1 TATTTATATATTTATTTATC
* * *
7972890 TGTTAATATTTTTATTTATC
1 TATTTATATATTTATTTATC
7972910 TGA-TTAT-TA-TTA-TTATC
1 T-ATTTATATATTTATTTATC
7972927 T-TTT-T-TA-TTA-TTATC
1 TATTTATATATTTATTTATC
* * *
7972942 TATTAACATTTTTATTT-T-
1 TATTTATATATTTATTTATC
*
7972960 TATTT-TATTTTTATTT
1 TATTTATATATTTATTT
7972976 TCTTTTCTTT
Statistics
Matches: 151, Mismatches: 22, Indels: 43
0.70 0.10 0.20
Matches are distributed among these distances:
15 13 0.09
16 12 0.08
17 44 0.29
18 32 0.21
19 11 0.07
20 39 0.26
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (20 bp):
TATTTATATATTTATTTATC
Found at i:7972795 original size:36 final size:36
Alignment explanation
Indices: 7972749--7972849 Score: 107
Period size: 36 Copynumber: 2.7 Consensus size: 36
7972739 AATGTATATT
* *
7972749 TTTATCTGTTAATATATTTATATATTTATTTATCTA
1 TTTATATGTTAATATATTTATATATTTATTTACCTA
7972785 TTTATATGTTAATATATATT-TAT-TATTATTTACCTA
1 TTTATATGTTAATATAT-TTATATAT-TTATTTACCTA
* *
7972821 TTATATATTATTATTATAATTTATATATT
1 TT-TATA-TGTTAATAT-ATTTATATATT
7972850 ATTATTATTA
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
35 1 0.02
36 31 0.57
37 6 0.11
38 9 0.17
39 6 0.11
40 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (36 bp):
TTTATATGTTAATATATTTATATATTTATTTACCTA
Found at i:7972812 original size:3 final size:3
Alignment explanation
Indices: 7972804--7972974 Score: 76
Period size: 3 Copynumber: 52.7 Consensus size: 3
7972794 TAATATATAT
* *
7972804 TTA TTA TTA TTTA CCTA TTA TATA TTA TTA TTA TAA TTTA TATA TTA
1 TTA TTA TTA -TTA -TTA TTA T-TA TTA TTA TTA TTA -TTA T-TA TTA
* * * *
7972851 TTA TTA TTA TAA TTTA TCTA TTA TTT TTA TTTA TTTA TCTG TTA ATA
1 TTA TTA TTA TTA -TTA T-TA TTA TTA TTA -TTA -TTA T-TA TTA TTA
* *
7972898 TTT TTA TTTA TCTGA TTA TTA TTA TTA TCT- TTT TTA TTA TTA TCTA
1 TTA TTA -TTA T-T-A TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-TA
** * * *
7972944 TTA ACA TTT TTA TTT TTA TT- TTA TTT TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7972975 TTCTTTTCTT
Statistics
Matches: 127, Mismatches: 26, Indels: 30
0.69 0.14 0.16
Matches are distributed among these distances:
2 3 0.02
3 86 0.68
4 36 0.28
5 2 0.02
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7972899 original size:50 final size:50
Alignment explanation
Indices: 7972764--7972905 Score: 134
Period size: 50 Copynumber: 2.9 Consensus size: 50
7972754 CTGTTAATAT
* * * *
7972764 ATTTATATATT-TATTTATCTATTTATATGTTAATA-TA-TATTTATTATT
1 ATTTATCTATTATTTTTATTTATTTATATGTTAATATTATTA-TTATTATA
* *
7972812 ATTTACCTATTATATATTA-TTA-TTATAAT-TTATATATTATTATTATTATA
1 ATTTATCTATTAT-TTTTATTTATTTAT-ATGTTA-ATATTATTATTATTATA
* *
7972862 ATTTATCTATTATTTTTATTTATTTATCTGTTAATATTTTTATT
1 ATTTATCTATTATTTTTATTTATTTATATGTTAATATTATTATT
7972906 TATCTGATTA
Statistics
Matches: 75, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
48 16 0.21
49 12 0.16
50 38 0.51
51 9 0.12
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (50 bp):
ATTTATCTATTATTTTTATTTATTTATATGTTAATATTATTATTATTATA
Found at i:7972907 original size:4 final size:4
Alignment explanation
Indices: 7972638--7972888 Score: 78
Period size: 4 Copynumber: 62.2 Consensus size: 4
7972628 GTAGGCCTAT
* *
7972638 TTTA TTTA TTTA TTTA TTTA TCT- TGTA TTT- TTTA TTTTCA TTT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTT-A TTTA TTTA
* * * *
7972685 -TAA CTTA TTTA TTTA TTTT TATTA TTT- GTTA TTTA TTTA -TTA TTACTA
1 TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TT--TA
* * * * * * *
7972733 TTTA TTAA TGTA TATT- TTTA TCTG TTAA TATA TTTA TATA TTTA TTTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * **
7972781 TCTA TTTA TATG TTAATA TATA TTTA -TTA -TTA TTTA CCTA TTATA TATTA
1 TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA T-TTA
* * *
7972831 -TTA TTATAA TTTA TATA -TTA -TTA -TTA TTATAA TTTA TCTA TTATT
1 TTTA TT-T-A TTTA TTTA TTTA TTTA TTTA TT-T-A TTTA TTTA TT-TA
7972876 TTTA TTTA TTTA T
1 TTTA TTTA TTTA T
7972889 CTGTTAATAT
Statistics
Matches: 180, Mismatches: 42, Indels: 50
0.66 0.15 0.18
Matches are distributed among these distances:
3 34 0.19
4 110 0.61
5 22 0.12
6 14 0.08
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:7972954 original size:24 final size:24
Alignment explanation
Indices: 7972770--7972963 Score: 67
Period size: 24 Copynumber: 7.7 Consensus size: 24
7972760 ATATATTTAT
* * *
7972770 ATATTTATTTATCTATTTATATGTTA
1 ATATTTTTTTAT-TA-TTATCTATTA
*
7972796 ATATATATTTATTATTATTTACCTATT-
1 ATAT-T-TTT-TTATTA-TTATCTATTA
* * * *
7972823 ATATATTATTATTATAATTTATATA
1 ATATTTTTTTATTATTATCTAT-TA
* * *
7972848 TTATTATTATTATAATTTATCTATT-
1 ATATT-TTTTTATTA-TTATCTATTA
*
7972873 AT-TTTTATTTA-T-TTATCTGTTA
1 ATATTTT-TTTATTATTATCTATTA
7972895 ATATTTTTATTTATCTGATTAT-TATTA
1 ATA-TTTT-TTTAT-T-ATTATCTATTA
*
7972922 TTATCTTTTTTATTATTATCTATTA
1 ATAT-TTTTTTATTATTATCTATTA
* *
7972947 ACATTTTTATTTTTATT
1 ATATTTTT-TTATTATT
7972964 TTATTTTTAT
Statistics
Matches: 127, Mismatches: 23, Indels: 37
0.68 0.12 0.20
Matches are distributed among these distances:
21 8 0.06
22 2 0.02
23 7 0.06
24 30 0.24
25 21 0.17
26 20 0.16
27 20 0.16
28 15 0.12
29 4 0.03
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (24 bp):
ATATTTTTTTATTATTATCTATTA
Found at i:7972967 original size:11 final size:11
Alignment explanation
Indices: 7972951--7972981 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7972941 CTATTAACAT
7972951 TTTTATTTTTA
1 TTTTATTTTTA
7972962 TTTTATTTTTA
1 TTTTATTTTTA
*
7972973 TTTTCTTTT
1 TTTTATTTT
7972982 CTTTTTTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:7973818 original size:4 final size:4
Alignment explanation
Indices: 7973803--7973848 Score: 57
Period size: 4 Copynumber: 12.8 Consensus size: 4
7973793 TTTTTTTTTC
7973803 ATTT -TTT A-TT ATTT ATTT ATTT ATTT ATTT A-TT A-TT A-TT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
7973846 ATT
1 ATT
7973849 AATTAGATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 15 0.38
4 24 0.62
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:7973884 original size:15 final size:15
Alignment explanation
Indices: 7973864--7973922 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
7973854 GATTAGAATT
7973864 TTTTAATTTT-TTTAA
1 TTTT-ATTTTATTTAA
*
7973879 TTTTAATTTTATTTTA
1 TTTT-ATTTTATTTAA
7973895 TTTTATTTTA-TT-A
1 TTTTATTTTATTTAA
*
7973908 TTTTATTTTCTTTAA
1 TTTTATTTTATTTAA
7973923 ATAAAATTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
13 10 0.26
14 4 0.10
15 17 0.44
16 8 0.21
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTATTTTATTTAA
Found at i:7973894 original size:5 final size:5
Alignment explanation
Indices: 7973864--7973916 Score: 58
Period size: 5 Copynumber: 10.8 Consensus size: 5
7973854 GATTAGAATT
*
7973864 TTTTAA TTTT- TTTAA TTTTAA TTTTA TTTTA TTTTA TTTTA --TTA TTTTA
1 TTTT-A TTTTA TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
7973913 TTTT
1 TTTT
7973917 CTTTAAATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
3 3 0.07
4 3 0.07
5 26 0.63
6 9 0.22
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:7973898 original size:23 final size:22
Alignment explanation
Indices: 7973864--7973916 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 22
7973854 GATTAGAATT
*
7973864 TTTTAATTTT-TTTAATTTTA-A
1 TTTT-ATTTTATTTTATTTTATA
7973885 TTTTATTTTATTTTATTTTATTA
1 TTTTATTTTATTTTATTTTA-TA
7973908 TTTTATTTT
1 TTTTATTTT
7973917 CTTTAAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 5 0.18
21 13 0.46
23 10 0.36
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTATTTTATTTTATTTTATA
Found at i:7974028 original size:60 final size:58
Alignment explanation
Indices: 7973934--7974147 Score: 306
Period size: 60 Copynumber: 3.7 Consensus size: 58
7973924 TAAAATTCAA
7973934 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
* * * *
7973992 AAAAAATATTTTTTGAGAAAAAAGTTGAAAGCATCAATTTTTCTCGAAAATAAGCTTTCT
1 AAAAAATA-TTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
* * *
7974052 AAAAAAATATTTTTGAGTAAAAGTTAAAAGTATCAATTTTCCTTG-AAATAAGCCTTCT
1 -AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
* *
7974110 GAAAAATATTTTGGA-GAAAAGTTGAAAGTATCAATTTT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
7974148 TCCTGTACAA
Statistics
Matches: 139, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
56 21 0.15
57 13 0.09
58 20 0.14
59 31 0.22
60 46 0.33
61 8 0.06
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
Found at i:7974067 original size:119 final size:115
Alignment explanation
Indices: 7973933--7974149 Score: 344
Period size: 119 Copynumber: 1.9 Consensus size: 115
7973923 ATAAAATTCA
* *
7973933 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCTAAAAAA
1 AAAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTG-AAATAAGCCTTCTAAAAAA
7973998 TATTTTTTGAGAAAAAAGTTGAAAGCATCAATTTTTCTCGAAAATAAGCTTTCT
65 TA--TTTTG-GAAAAAAGTTGAAAGCATCAATTTTTCTCGAAAATAAGCTTTCT
* *
7974052 AAAAAAATATTTTTGAGTAAAAGTTAAAAGTATCAATTTTCCTTGAAATAAGCCTTCTGAAAAAT
1 AAAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTGAAATAAGCCTTCTAAAAAAT
* *
7974117 ATTTTGGAGAAAAGTTGAAAGTATCAATTTTTC
66 ATTTTGGAAAAAAGTTGAAAGCATCAATTTTTC
7974150 CTGTACAAAA
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
115 25 0.27
116 5 0.05
118 19 0.21
119 43 0.47
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (115 bp):
AAAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTGAAATAAGCCTTCTAAAAAAT
ATTTTGGAAAAAAGTTGAAAGCATCAATTTTTCTCGAAAATAAGCTTTCT
Found at i:7984423 original size:22 final size:22
Alignment explanation
Indices: 7984398--7984463 Score: 72
Period size: 18 Copynumber: 3.2 Consensus size: 22
7984388 TATGCTTTAA
7984398 AAAATGAAAAAAGAAAAAAATG
1 AAAATGAAAAAAGAAAAAAATG
7984420 AAAATG-AAAAAG---AAAATG
1 AAAATGAAAAAAGAAAAAAATG
7984438 AAAA-GAAAAAA-AAAAGTAAATG
1 AAAATGAAAAAAGAAAA--AAATG
7984460 AAAA
1 AAAA
7984464 AGGAGGACTC
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
17 1 0.03
18 15 0.39
20 1 0.03
21 6 0.16
22 15 0.39
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (22 bp):
AAAATGAAAAAAGAAAAAAATG
Found at i:7984436 original size:34 final size:34
Alignment explanation
Indices: 7984398--7984465 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
7984388 TATGCTTTAA
*
7984398 AAAATGAAAA-AAGAAAAAAATGAAAATGAAAAAG
1 AAAATGAAAAGAA-AAAAAAAAGAAAATGAAAAAG
*
7984432 AAAATGAAAAGAAAAAAAAAAGTAAATGAAAAAG
1 AAAATGAAAAGAAAAAAAAAAGAAAATGAAAAAG
7984466 GAGGACTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 29 0.94
35 2 0.06
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (34 bp):
AAAATGAAAAGAAAAAAAAAAGAAAATGAAAAAG
Found at i:7985573 original size:42 final size:42
Alignment explanation
Indices: 7985438--7985572 Score: 198
Period size: 42 Copynumber: 3.2 Consensus size: 42
7985428 ATGATTGTTA
* *
7985438 AGGAGCTTTATTTATTTTCAAAGTTGTTAAGCTTCTGATTAG
1 AGGAGCTTTATTTATTTTCAAAGTTGTTGAGCCTCTGATTAG
*
7985480 AGGAGCTTTATTTATTTTCAAAGTTGTTGAGCCTCTAATTAG
1 AGGAGCTTTATTTATTTTCAAAGTTGTTGAGCCTCTGATTAG
* ** *
7985522 AGGAGCTTTGTTTATTTTCAAAGTCATTGAGCCTCTGCTTAG
1 AGGAGCTTTATTTATTTTCAAAGTTGTTGAGCCTCTGATTAG
*
7985564 AGGGGCTTT
1 AGGAGCTTT
7985573 GATCAATATT
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 84 1.00
ACGTcount: A:0.24, C:0.13, G:0.21, T:0.42
Consensus pattern (42 bp):
AGGAGCTTTATTTATTTTCAAAGTTGTTGAGCCTCTGATTAG
Found at i:7985791 original size:14 final size:14
Alignment explanation
Indices: 7985772--7986021 Score: 65
Period size: 14 Copynumber: 17.4 Consensus size: 14
7985762 GTAAGCTTAT
7985772 TTTATTTTTATTTA
1 TTTATTTTTATTTA
*
7985786 TTTATTTTTTATCT-
1 TTTA-TTTTTATTTA
*
7985800 TGTATTTTATATTTTCA
1 TTTATTTT-TA-TTT-A
* *
7985817 TTT-TTTATAACTTA
1 TTTATTT-TTATTTA
7985831 TTTA--TTTA-TTA
1 TTTATTTTTATTTA
7985842 TTTATTATTTATTTA
1 TTTATT-TTTATTTA
*
7985857 TGATTACTATTTA-TTA
1 T--TTA-TTTTTATTTA
*
7985873 CTGTATATTTTTATCTA
1 -T-T-TATTTTTATTTA
* *
7985890 TTAATATATTTATATA
1 TT--TATTTTTATTTA
7985906 TTTATTTATCTATTTA
1 TTTATTT-T-TATTTA
* * * *
7985922 TATGTTAATATATATA
1 TTTATT--TTTATTTA
*
7985938 TTTATTATTATTTA
1 TTTATTTTTATTTA
* *
7985952 TCTATTTATATATTA
1 TTTATTTTTAT-TTA
*
7985967 -TTATTATTATTTA
1 TTTATTTTTATTTA
* *
7985980 TATATTATTA-TTA
1 TTTATTTTTATTTA
* *
7985993 --TA-ATTTATCTA
1 TTTATTTTTATTTA
7986004 -TTATTTTTATTTA
1 TTTATTTTTATTTA
7986017 TTTAT
1 TTTAT
7986022 CTGTTAATAT
Statistics
Matches: 172, Mismatches: 36, Indels: 56
0.65 0.14 0.21
Matches are distributed among these distances:
10 3 0.02
11 11 0.06
12 4 0.02
13 18 0.10
14 53 0.31
15 21 0.12
16 45 0.26
17 15 0.09
18 2 0.01
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.66
Consensus pattern (14 bp):
TTTATTTTTATTTA
Found at i:7985911 original size:20 final size:19
Alignment explanation
Indices: 7985876--7986008 Score: 119
Period size: 20 Copynumber: 6.9 Consensus size: 19
7985866 TTTATTACTG
7985876 TATATTT-T-TATCTATTAA
1 TATATTTATATAT-TATTAA
*
7985894 TATATTTATATATTTATTTA
1 TATATTTATATA-TTATTAA
* * *
7985914 TCTATTTATATGTTAATATA
1 TATATTTATATATTATTA-A
*
7985934 TATATTTAT-TATTATTTA
1 TATATTTATATATTATTAA
* *
7985952 TCTATTTATATATTATTAT
1 TATATTTATATATTATTAA
*
7985971 TATTATTTATATATTATTAT
1 TA-TATTTATATATTATTAA
*
7985991 TATAATTTATCTATTATT
1 TAT-ATTTATATATTATT
7986009 TTTATTTATT
Statistics
Matches: 94, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
18 16 0.17
19 19 0.20
20 58 0.62
21 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (19 bp):
TATATTTATATATTATTAA
Found at i:7985913 original size:28 final size:26
Alignment explanation
Indices: 7985820--7986081 Score: 119
Period size: 24 Copynumber: 10.1 Consensus size: 26
7985810 ATTTTCATTT
*
7985820 TTTATA-ACTTATTTA-T-TTAT-TA
1 TTTATATATTTATTTATTATTATATA
* *
7985842 TTTAT-TATTTATTTATGATTACTATT
1 TTTATATATTTATTTATTATTA-TATA
*
7985868 TATTACTGTATATT-TTTATCTATTAATATA
1 T-TTA-TATAT-TTATTTAT-TATT-ATATA
7985898 TTTATATATTTATTTATCTATT-TATA
1 TTTATATATTTATTTAT-TATTATATA
* *
7985924 TGTTAATATATATATTTATTATTATTTA
1 T-TT-ATATATTTATTTATTATTATATA
* * *
7985952 TCTATTTATATA-TTATTATTAT-TA
1 TTTATATATTTATTTATTATTATATA
7985976 TTTATATATTATTATTATAATTTATCTAT-TA
1 TTTATATA-T-TTATT-T-A-TTAT-TATATA
*
7986007 TTT-T-TATTTATTTATCTGTTA-ATA
1 TTTATATATTTATTTAT-TATTATATA
*
7986031 TTT-T-TATTTATCTGATTATTAT-TA
1 TTTATATATTTAT-TTATTATTATATA
* *
7986055 -TTAT-TATCTTTTTTATTATTATCTA
1 TTTATATAT-TTATTTATTATTATATA
7986080 TT
1 TT
7986082 AACATTTTTA
Statistics
Matches: 192, Mismatches: 18, Indels: 56
0.72 0.07 0.21
Matches are distributed among these distances:
22 13 0.07
23 2 0.01
24 46 0.24
25 23 0.12
26 19 0.10
27 18 0.09
28 34 0.18
29 14 0.07
30 14 0.07
31 9 0.05
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTATATATTTATTTATTATTATATA
Found at i:7985935 original size:38 final size:38
Alignment explanation
Indices: 7985893--7985985 Score: 118
Period size: 38 Copynumber: 2.4 Consensus size: 38
7985883 TTATCTATTA
*
7985893 ATATATTTATATATTTATTTATCTATTTATATGTTAAT
1 ATATATTTATATATTTATTTATCTATTTATATATTAAT
*
7985931 ATATATATT-TAT-TATTATTTATCTATTTATATATTATT
1 ATATAT-TTATATAT-TTATTTATCTATTTATATATTAAT
7985969 ATTATTATTTATATATT
1 A-TA-TATTTATATATT
7985986 ATTATTATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
37 1 0.02
38 32 0.68
39 6 0.13
40 7 0.15
41 1 0.02
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.62
Consensus pattern (38 bp):
ATATATTTATATATTTATTTATCTATTTATATATTAAT
Found at i:7985947 original size:3 final size:3
Alignment explanation
Indices: 7985939--7986082 Score: 83
Period size: 3 Copynumber: 43.0 Consensus size: 3
7985929 ATATATATAT
7985939 TTA TTA TTA TTTA TCTA TTTA TATA TTA TTA TTA TTA TTTA TATA TTA
1 TTA TTA TTA -TTA T-TA -TTA T-TA TTA TTA TTA TTA -TTA T-TA TTA
* * * * *
7985987 TTA TTA TAA TTTA TCTA TTA TTT TTA TTTA TTTA TCTG TTA ATA TTT
1 TTA TTA TTA -TTA T-TA TTA TTA TTA -TTA -TTA T-TA TTA TTA TTA
*
7986034 TTA TTTA TCTGA TTA TTA TTA TTA TTA TCT- TTT TTA TTA TTA TCTA
1 TTA -TTA T-T-A TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-TA
7986080 TTA
1 TTA
7986083 ACATTTTTAT
Statistics
Matches: 114, Mismatches: 11, Indels: 32
0.73 0.07 0.20
Matches are distributed among these distances:
2 1 0.01
3 71 0.62
4 39 0.34
5 3 0.03
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7985960 original size:107 final size:98
Alignment explanation
Indices: 7985829--7986056 Score: 244
Period size: 99 Copynumber: 2.2 Consensus size: 98
7985819 TTTTATAACT
*
7985829 TATTTATTTATTATTTATTATTTATTTATGATTACTATTTATTACTGTATATTTTTATCTATTAA
1 TATTTA-TTATTATTTATTATTTA--TAT-ATTACTA-TTATTA-TGTATA-TATTAT-TATT-A
7985894 TATATTTATATATT-TATTTATCTATTTATATGTTAATATATA
57 TA-ATTTATATATTATATTTATCTATTTATATGTTAATATATA
* *
7985936 TATTTATTATTATTTATCTATTTATATATTATTATTATTATTTATATATTATTATTATAATTTAT
1 TATTTATTATTATTTAT-TATTTATATATTACTATTATTATGTATATATTATTATTATAATTTAT
* * * * * *
7986001 CTATTATTTTTATTTATTTATCTGTTAATATTTT
65 ATATTATATTTATCTATTTATATGTTAATATATA
7986035 TATTTATCTGATTA-TTATTATT
1 TATTTAT-T-ATTATTTATTATT
7986057 ATTATCTTTT
Statistics
Matches: 108, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
98 10 0.09
99 37 0.34
100 9 0.08
101 9 0.08
102 5 0.05
103 6 0.06
104 6 0.06
105 3 0.03
106 11 0.10
107 12 0.11
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (98 bp):
TATTTATTATTATTTATTATTTATATATTACTATTATTATGTATATATTATTATTATAATTTATA
TATTATATTTATCTATTTATATGTTAATATATA
Found at i:7986013 original size:20 final size:19
Alignment explanation
Indices: 7985876--7986073 Score: 113
Period size: 20 Copynumber: 10.2 Consensus size: 19
7985866 TTTATTACTG
*
7985876 TATATTT-T-TATCTATTAA
1 TATATTTATCTAT-TATTAT
*
7985894 TATATTTATATATTTATT-T
1 TATATTTATCTA-TTATTAT
* * * *
7985913 ATCTATTTATATGTTAATAT
1 -TATATTTATCTATTATTAT
7985933 ATATATTTAT-TATTATT-T
1 -TATATTTATCTATTATTAT
* *
7985951 ATCTATTTATATATTATTAT
1 -TATATTTATCTATTATTAT
*
7985971 TATTATTTATATATTATTAT
1 TA-TATTTATCTATTATTAT
*
7985991 TATAATTTATCTATTATTTT
1 TAT-ATTTATCTATTATTAT
* *
7986011 TATTTATTTATCTGTTAATATT
1 TA--TATTTATCTATTATTA-T
*
7986033 TTTATTTATCTGATTATTAT
1 TATATTTATCT-ATTATTAT
*
7986053 TAT-TATTATCT-TTTTTAT
1 TATAT-TTATCTATTATTAT
7986071 TAT
1 TAT
7986074 TATCTATTAA
Statistics
Matches: 147, Mismatches: 19, Indels: 28
0.76 0.10 0.14
Matches are distributed among these distances:
18 26 0.18
19 20 0.14
20 80 0.54
21 18 0.12
22 3 0.02
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (19 bp):
TATATTTATCTATTATTAT
Found at i:7986037 original size:37 final size:37
Alignment explanation
Indices: 7985882--7986056 Score: 104
Period size: 38 Copynumber: 4.5 Consensus size: 37
7985872 ACTGTATATT
* * *
7985882 TTTATCTATTAATA-TATTTATATATTTATTTATCT-A
1 TTTATCTATTATTATTATTTATATA-TTATTAATATAA
* * * * *
7985918 TTTATATGTTAATATATATATTTAT-TATTATTTATCTAT
1 TTTATCTATT-AT-TAT-TATTTATATATTATTAATATAA
* *
7985957 TTATATATTATTATTATTATTTATATATTATTATTATAA
1 TT-TAT-CTATTATTATTATTTATATATTATTAATATAA
* * * *
7985996 TTTATCTATTATTTTTATTTATTTATCTGTTAATATTTTTA
1 TTTATCTATTATTATTATTTATATAT-TATTAATA---TAA
7986037 TTTATCTGATTATTATTATT
1 TTTATCT-ATTATTATTATT
7986057 ATTATCTTTT
Statistics
Matches: 109, Mismatches: 17, Indels: 20
0.75 0.12 0.14
Matches are distributed among these distances:
36 8 0.07
37 19 0.17
38 28 0.26
39 19 0.17
40 12 0.11
41 12 0.11
42 11 0.10
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.63
Consensus pattern (37 bp):
TTTATCTATTATTATTATTTATATATTATTAATATAA
Found at i:7986040 original size:4 final size:4
Alignment explanation
Indices: 7985778--7986021 Score: 83
Period size: 4 Copynumber: 63.2 Consensus size: 4
7985768 TTATTTTATT
* * *
7985778 TTTA TTTA TTTA TTT- TTTA TCT- TGTA TTTTA TATT- TTCA TTT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA T-TTA TTTA TTTA TTTA
* * *
7985824 -TAA CTTA TTTA TTTA -TTA TTTA -TTA TTTA TTTA TGATTA -CTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T--TTA TTTA TTTA
* * * * * *
7985870 -TTA CTGTA TATT- TTTA TCTA TTAA TATA TTTA TATA TTTA TTTA TCTA
1 TTTA -TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * * * *
7985918 TTTA TATG TTAA TATA TATA TTTA -TTA -TTA TTTA TCTA TTTA TATA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * *
7985964 -TTA -TTA -TTA -TTA TTTA TATA -TTA -TTA TTATAA TTTA TCTA TTATT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-T-A TTTA TTTA TT-TA
7986009 TTTA TTTA TTTA T
1 TTTA TTTA TTTA T
7986022 CTGTTAATAT
Statistics
Matches: 178, Mismatches: 40, Indels: 44
0.68 0.15 0.17
Matches are distributed among these distances:
3 46 0.26
4 113 0.63
5 13 0.07
6 6 0.03
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:7986056 original size:24 final size:23
Alignment explanation
Indices: 7985939--7985998 Score: 52
Period size: 23 Copynumber: 2.5 Consensus size: 23
7985929 ATATATATAT
7985939 TTATTATTATTTATCTATTTATAT-A
1 TTATTATTATTT-T-TATTTAT-TGA
*
7985964 TTATTATTATTATTTATATATT-A
1 TTATTATTATT-TTTATTTATTGA
*
7985987 TTATTATAATTT
1 TTATTATTATTT
7985999 ATCTATTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 1 0.03
23 12 0.38
24 6 0.19
25 12 0.38
26 1 0.03
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTATTATTTTTATTTATTGA
Found at i:7986485 original size:31 final size:32
Alignment explanation
Indices: 7986437--7986503 Score: 100
Period size: 31 Copynumber: 2.1 Consensus size: 32
7986427 AATTTTTAAA
* *
7986437 TTTCGATTGAATTTTTCGGTGAAGTTTGAATT
1 TTTCGATTGAATTTTTCGATCAAGTTTGAATT
*
7986469 TTTCGA-TGACTTTTTCGATCAAGTTTGAATT
1 TTTCGATTGAATTTTTCGATCAAGTTTGAATT
7986500 TTTC
1 TTTC
7986504 AGTCAGCTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 26 0.81
32 6 0.19
ACGTcount: A:0.21, C:0.10, G:0.18, T:0.51
Consensus pattern (32 bp):
TTTCGATTGAATTTTTCGATCAAGTTTGAATT
Found at i:7986938 original size:8 final size:8
Alignment explanation
Indices: 7986925--7987075 Score: 90
Period size: 8 Copynumber: 18.0 Consensus size: 8
7986915 CGTTCTTAGG
7986925 TTTTTTTA
1 TTTTTTTA
7986933 TTTTTTTA
1 TTTTTTTA
*
7986941 TTTATTTA
1 TTTTTTTA
*
7986949 TTTATTTA
1 TTTTTTTA
* *
7986957 CTTATTTA
1 TTTTTTTA
*
7986965 TTTTATTA
1 TTTTTTTA
*
7986973 TTATTATTAA
1 TT-TT-TTTA
* **
7986983 TTAGATTAGA
1 TT--TTTTTA
* *
7986993 ATTGTTTA
1 TTTTTTTA
7987001 TTATTTTTA
1 TT-TTTTTA
7987010 TTTTTTTA
1 TTTTTTTA
7987018 TTTTTCTT-
1 TTTTT-TTA
*
7987026 TATTTTTA
1 TTTTTTTA
7987034 TTTTTATT-
1 TTTTT-TTA
7987042 TTTATTTTA
1 TTT-TTTTA
*
7987051 TTTTATTA
1 TTTTTTTA
7987059 TTTTTTTA
1 TTTTTTTA
7987067 TTTTCTTTA
1 TTTT-TTTA
7987076 AATAAAATTC
Statistics
Matches: 111, Mismatches: 22, Indels: 19
0.73 0.14 0.12
Matches are distributed among these distances:
7 2 0.02
8 79 0.71
9 22 0.20
10 7 0.06
11 1 0.01
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7986946 original size:4 final size:4
Alignment explanation
Indices: 7986929--7986967 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
7986919 CTTAGGTTTT
* *
7986929 TTTA TTTT TTTA TTTA TTTA TTTA TTTA CTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
7986968 TATTATTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:7986946 original size:12 final size:12
Alignment explanation
Indices: 7986925--7987069 Score: 59
Period size: 12 Copynumber: 11.7 Consensus size: 12
7986915 CGTTCTTAGG
7986925 TTTT-TTTATTT
1 TTTTATTTATTT
7986936 TTTTATTTATTT
1 TTTTATTTATTT
* *
7986948 ATTTATTTACTT
1 TTTTATTTATTT
*
7986960 ATTTATTTTATTAT
1 TTTTA-TTTATT-T
* * *
7986974 TATTATTAATTA
1 TTTTATTTATTT
** **
7986986 GATTA-GAATTGT
1 TTTTATTTATT-T
7986998 TTATTATTTTTATTT
1 TT-TTA--TTTATTT
7987013 TTTTATTT-TTCT
1 TTTTATTTATT-T
7987025 TTATT-TTTATTT
1 TT-TTATTTATTT
7987037 TTATT-TTTATTT
1 TT-TTATTTATTT
7987049 TATTT-TATTATTT
1 T-TTTAT-TTATTT
7987062 TTTTATTT
1 TTTTATTT
7987070 TCTTTAAATA
Statistics
Matches: 106, Mismatches: 14, Indels: 27
0.72 0.10 0.18
Matches are distributed among these distances:
11 10 0.09
12 57 0.54
13 26 0.25
14 7 0.07
15 3 0.03
16 3 0.03
ACGTcount: A:0.21, C:0.01, G:0.02, T:0.75
Consensus pattern (12 bp):
TTTTATTTATTT
Found at i:7987150 original size:58 final size:58
Alignment explanation
Indices: 7987088--7987366 Score: 391
Period size: 59 Copynumber: 4.8 Consensus size: 58
7987078 TAAAATTCAA
* *
7987088 AAAAAATGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
* * * * *
7987146 AAAAAATATTTTTTGAGGAAAAGTTAAAAGTATCAATTTTTCTCGAAAATAAACTCTCT
1 AAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
* *
7987205 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAGCTTTCT
1 -AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
*
7987264 AAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGCTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAGCTTTCT
* *
7987323 GAAAAACA-TTTT-AGGAAAAAGTTGAAAGTATCAATTTTTCCTTG
1 AAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAA-TTTTCCTTG
7987367 TACAAAAGCA
Statistics
Matches: 201, Mismatches: 15, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
57 3 0.01
58 75 0.37
59 115 0.57
60 8 0.04
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
Found at i:7991808 original size:7 final size:7
Alignment explanation
Indices: 7991796--7991862 Score: 55
Period size: 7 Copynumber: 9.0 Consensus size: 7
7991786 ACTAAGCTTA
*
7991796 AAAAAAT
1 AAAAAAG
*
7991803 AAAAAAT
1 AAAAAAG
7991810 AAAAAA-
1 AAAAAAG
7991816 AATGAAAATG
1 AA--AAAA-G
*
7991826 AAAAAAA
1 AAAAAAG
7991833 AATGAAAAG
1 AA--AAAAG
7991842 AAAAAAG
1 AAAAAAG
7991849 AAAAAAG
1 AAAAAAG
7991856 AAAAAAG
1 AAAAAAG
7991863 TGAATGAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
6 2 0.04
7 34 0.65
8 8 0.15
9 6 0.12
10 2 0.04
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.07
Consensus pattern (7 bp):
AAAAAAG
Found at i:7991816 original size:16 final size:16
Alignment explanation
Indices: 7991795--7991861 Score: 61
Period size: 17 Copynumber: 4.3 Consensus size: 16
7991785 TACTAAGCTT
7991795 AAAAAAATAAAAAAT-A
1 AAAAAAAT-AAAAATGA
*
7991811 AAAAAAATGAAAATGAA
1 AAAAAAATAAAAATG-A
*
7991828 AAAAAAATGAAAA-GA
1 AAAAAAATAAAAATGA
*
7991843 AAAAAGA-AAAAA-GA
1 AAAAAAATAAAAATGA
7991857 AAAAA
1 AAAAA
7991862 GTGAATGAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
14 11 0.24
15 12 0.26
16 9 0.20
17 14 0.30
ACGTcount: A:0.84, C:0.00, G:0.09, T:0.07
Consensus pattern (16 bp):
AAAAAAATAAAAATGA
Found at i:7992902 original size:41 final size:42
Alignment explanation
Indices: 7992847--7992939 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
7992837 ATGATTGTTA
* * * *
7992847 AGGAACTTTATTTA-TTTCAAAGTTGTTGAGCTTCTGATTAG
1 AGGAGCTTTGTTTATTTTCAAAGTCGTTGAGCCTCTGATTAG
*
7992888 AGGAGCTTTGTTTATTTTCAAAGTCGTTGAGCCTCTGCTTAG
1 AGGAGCTTTGTTTATTTTCAAAGTCGTTGAGCCTCTGATTAG
*
7992930 AGGAGATTTG
1 AGGAGCTTTG
7992940 ATCAAGATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
41 12 0.27
42 33 0.73
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41
Consensus pattern (42 bp):
AGGAGCTTTGTTTATTTTCAAAGTCGTTGAGCCTCTGATTAG
Found at i:7993260 original size:28 final size:26
Alignment explanation
Indices: 7993169--7993375 Score: 122
Period size: 23 Copynumber: 8.3 Consensus size: 26
7993159 TTTTATAACT
*
7993169 TATTTATTATTTAT-TATTTATTTAT
1 TATTTATTATTTATATATTTATATAT
* * * *
7993194 GA-TTACTATTTAT-TA-ATGTATAT
1 TATTTATTATTTATATATTTATATAT
7993217 T-TTTATT-TGTTAATATATTTATATACT
1 TATTTATTAT-TT-ATATATTTATATA-T
*
7993244 TATTTATCTATTTATATGTTAATATATAT
1 TATTTAT-TATTTATATATT--TATATAT
*
7993273 T-TATTATTATTTATCTATTTATATAT
1 TAT-TTATTATTTATATATTTATATAT
7993299 TA-TTATTA-TTATA-ATTTATATAT
1 TATTTATTATTTATATATTTATATAT
* * *
7993322 TA-TTATTA-TAATTTATCTAT-TAT
1 TATTTATTATTTATATATTTATATAT
* * *
7993345 TA-TTATAATTTATCTA-TTAT-TTT
1 TATTTATTATTTATATATTTATATAT
7993368 TATTTATT
1 TATTTATT
7993376 TATCTGTTAA
Statistics
Matches: 144, Mismatches: 22, Indels: 33
0.72 0.11 0.17
Matches are distributed among these distances:
22 1 0.01
23 49 0.34
24 32 0.22
25 9 0.06
26 13 0.09
27 2 0.01
28 22 0.15
29 9 0.06
30 7 0.05
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (26 bp):
TATTTATTATTTATATATTTATATAT
Found at i:7993281 original size:3 final size:3
Alignment explanation
Indices: 7993273--7993434 Score: 94
Period size: 3 Copynumber: 49.0 Consensus size: 3
7993263 TAATATATAT
*
7993273 TTA TTA TTA TTTA TCTA TTTA TATA TTA TTA TTA TTA TAA TTTA TATA
1 TTA TTA TTA -TTA T-TA -TTA T-TA TTA TTA TTA TTA TTA -TTA T-TA
* * *
7993321 TTA TTA TTA TAA TTTA TCTA TTA TTA TTA TAA TTTA TCTA TTA TTT TTA
1 TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA
* * *
7993370 TTTA TTTA TCTG TTA ATA TTT TTA TTTA TCTGA TTA TTA TTA TT- TT-
1 -TTA -TTA T-TA TTA TTA TTA TTA -TTA T-T-A TTA TTA TTA TTA TTA
7993416 TTA TTA TTA TTA TCTA TTA
1 TTA TTA TTA TTA T-TA TTA
7993435 ACATTTTTAT
Statistics
Matches: 128, Mismatches: 14, Indels: 34
0.73 0.08 0.19
Matches are distributed among these distances:
2 4 0.03
3 79 0.62
4 42 0.33
5 3 0.02
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:7993324 original size:20 final size:20
Alignment explanation
Indices: 7993299--7993428 Score: 154
Period size: 20 Copynumber: 6.5 Consensus size: 20
7993289 ATTTATATAT
*
7993299 TATTATTATTATAATTTATA
1 TATTATTATTATAATTTATC
7993319 TATTATTATTATAATTTATC
1 TATTATTATTATAATTTATC
7993339 TATTATTATTATAATTTATC
1 TATTATTATTATAATTTATC
* *
7993359 TATTATTTTTATTTATTTATC
1 TATTATTATTA-TAATTTATC
* * * *
7993380 TGTTAATATTTTTATTTATC
1 TATTATTATTATAATTTATC
**
7993400 TGATTATTATTATTTTTTAT-
1 T-ATTATTATTATAATTTATC
7993420 TATTATTAT
1 TATTATTAT
7993429 CTATTAACAT
Statistics
Matches: 97, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
19 8 0.08
20 60 0.62
21 29 0.30
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (20 bp):
TATTATTATTATAATTTATC
Found at i:7993396 original size:24 final size:25
Alignment explanation
Indices: 7993362--7993446 Score: 86
Period size: 24 Copynumber: 3.4 Consensus size: 25
7993352 ATTTATCTAT
*
7993362 TATTTTTATTTAT-TTATCTGTTAA
1 TATTTTTATTTATATTATCTATTAA
* * *
7993386 TATTTTTATTTATCTGAT-TATTAT
1 TATTTTTATTTATATTATCTATTAA
7993410 TATTTTT-TATTATTATTATCTATTAA
1 TATTTTTAT-TTA-TATTATCTATTAA
*
7993436 CATTTTTATTT
1 TATTTTTATTT
7993447 TGATTTTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
23 1 0.02
24 27 0.55
25 7 0.14
26 13 0.27
27 1 0.02
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (25 bp):
TATTTTTATTTATATTATCTATTAA
Found at i:7994026 original size:16 final size:16
Alignment explanation
Indices: 7993986--7994034 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
7993976 TTCGTGGTTT
7993986 AGAGAGAAGGGATAGA-
1 AGAGAGAAGGGA-AGAG
7994002 AGA-AGAAGGGAAGAG
1 AGAGAGAAGGGAAGAG
7994017 AGAGAGAA-GGAAG-G
1 AGAGAGAAGGGAAGAG
7994031 AGAG
1 AGAG
7994035 TTCTGTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
14 8 0.26
15 16 0.52
16 7 0.23
ACGTcount: A:0.51, C:0.00, G:0.47, T:0.02
Consensus pattern (16 bp):
AGAGAGAAGGGAAGAG
Found at i:7994291 original size:4 final size:4
Alignment explanation
Indices: 7994277--7994309 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
7994267 CCCAGTTTTT
*
7994277 TTTA TTT- TTTA TTTA TTTA TTTA CTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
7994310 ATTATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:7994297 original size:15 final size:15
Alignment explanation
Indices: 7994277--7994411 Score: 52
Period size: 16 Copynumber: 9.0 Consensus size: 15
7994267 CCCAGTTTTT
7994277 TTTATTTTTTATTTA
1 TTTATTTTTTATTTA
*
7994292 TTTATTTACTTATTTA
1 TTTATTT-TTTATTTA
*
7994308 -TTATTATTATTATTAA
1 TTTATT-TT-TTATTTA
* ** *
7994324 TTAGATTAGAATTGTTTA
1 TT-TATT--TTTTATTTA
*
7994342 -TTATTTATTA-TTA
1 TTTATTTTTTATTTA
*
7994355 TTT-TATTTTTCTTTA
1 TTTAT-TTTTTATTTA
7994370 TTTTATTTTTTA-TT-
1 -TTTATTTTTTATTTA
*
7994384 TTTATTTTAT-TTTA
1 TTTATTTTTTATTTA
*
7994398 TTT-TATTTTATTTA
1 TTTATTTTTTATTTA
7994412 AATAAAATTC
Statistics
Matches: 88, Mismatches: 18, Indels: 29
0.65 0.13 0.21
Matches are distributed among these distances:
13 19 0.22
14 16 0.18
15 17 0.19
16 25 0.28
17 3 0.03
18 8 0.09
ACGTcount: A:0.24, C:0.01, G:0.02, T:0.72
Consensus pattern (15 bp):
TTTATTTTTTATTTA
Found at i:7994354 original size:10 final size:10
Alignment explanation
Indices: 7994278--7994405 Score: 79
Period size: 10 Copynumber: 12.6 Consensus size: 10
7994268 CCAGTTTTTT
*
7994278 TTATTTTTTA
1 TTATTTATTA
7994288 TTTATTTATTTA
1 -TTATTTA-TTA
7994300 CTTATTTATTA
1 -TTATTTATTA
7994311 TTA-TTATTA
1 TTATTTATTA
*
7994320 TTAATTAGATTA
1 TT-ATT-TATTA
**
7994332 GAATTGT-TTA
1 TTATT-TATTA
7994342 TTATTTATTA
1 TTATTTATTA
*
7994352 TTATTTTATTT
1 TTA-TTTATTA
*
7994363 TTCTTTATT-
1 TTATTTATTA
*
7994372 TTATTTTTTA
1 TTATTTATTA
7994382 TT-TTTATT-
1 TTATTTATTA
7994390 TTATTTTATT-
1 TTA-TTTATTA
7994400 TTATTT
1 TTATTT
7994406 TATTTAAATA
Statistics
Matches: 94, Mismatches: 14, Indels: 20
0.73 0.11 0.16
Matches are distributed among these distances:
8 2 0.02
9 24 0.26
10 33 0.35
11 21 0.22
12 14 0.15
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (10 bp):
TTATTTATTA
Found at i:7994362 original size:5 final size:5
Alignment explanation
Indices: 7994345--7994410 Score: 84
Period size: 5 Copynumber: 13.4 Consensus size: 5
7994335 TTGTTTATTA
*
7994345 TTTAT TATTAT TTTAT TTT-T CTTTAT TTTAT TTT-T TAT-T TTTAT TTTAT
1 TTTAT T-TTAT TTTAT TTTAT -TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
7994394 TTTAT TTTAT TTTAT TT
1 TTTAT TTTAT TTTAT TT
7994411 AAATAAAATT
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
4 7 0.13
5 42 0.76
6 6 0.11
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:7994382 original size:33 final size:33
Alignment explanation
Indices: 7994338--7994410 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
7994328 ATTAGAATTG
*
7994338 TTTATTATTTATTATTATTTTATTTT-TCTTTAT
1 TTTATTTTTTATTATTATTTTATTTTAT-TTTAT
*
7994371 TTTATTTTTTATTTTTATTTTATTTTATTTTAT
1 TTTATTTTTTATTATTATTTTATTTTATTTTAT
7994404 TTTATTT
1 TTTATTT
7994411 AAATAAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
33 36 0.97
34 1 0.03
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.79
Consensus pattern (33 bp):
TTTATTTTTTATTATTATTTTATTTTATTTTAT
Found at i:7994543 original size:60 final size:59
Alignment explanation
Indices: 7994423--7994640 Score: 293
Period size: 59 Copynumber: 3.7 Consensus size: 59
7994413 ATAAAATTCA
* * *
7994423 AAAAAAATGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAA-CTTTCT
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAA-AAAGCTTTCT
* * *
7994482 -AAAAAATATTTTTTGAGGAAAAGTTAAAAGTATCAATTTTTTCTCGAAAAAAAGCTCTCT
1 AAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTTCTTGAAAAAAAGCTTTCT
*
7994542 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCT
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAAAAAGCTTTCT
*
7994601 -AAAAAACA-TTTT-AGGAAAAAGTTGAAAGTATCAATTTTTC
1 AAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTTC
7994641 CTGTACAAAA
Statistics
Matches: 143, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
56 3 0.02
57 28 0.20
58 14 0.10
59 48 0.34
60 42 0.29
61 8 0.06
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.35
Consensus pattern (59 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAAAAAGCTTTCT
Found at i:7994569 original size:119 final size:117
Alignment explanation
Indices: 7994423--7994639 Score: 346
Period size: 119 Copynumber: 1.8 Consensus size: 117
7994413 ATAAAATTCA
*
7994423 AAAAAAATGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAACTTTCTAAAAAA
1 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAACTTTCTAAAAAA
*
7994488 TATTTTTTGAGG-AAAAGTTAAAAGTATCAATTTTTTCTCGAAAAAAAGCTCTCT
66 CA--TTTT-AGGAAAAAGTTAAAAGTATCAATTTTTTCTCGAAAAAAAGCTCTCT
* * *
7994542 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCTAAAAAA
1 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAACTTTCTAAAAAA
*
7994607 CATTTTAGGAAAAAGTTGAAAGTATCAATTTTT
66 CATTTTAGGAAAAAGTTAAAAGTATCAATTTTT
7994640 CCTGTACAAA
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
116 3 0.03
117 26 0.29
119 62 0.68
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.35
Consensus pattern (117 bp):
AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAACTTTCTAAAAAA
CATTTTAGGAAAAAGTTAAAAGTATCAATTTTTTCTCGAAAAAAAGCTCTCT
Found at i:7998226 original size:26 final size:25
Alignment explanation
Indices: 7998191--7998239 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
7998181 TTTCAAAAAT
7998191 TAAAAATTTTCAAACTTATATTTTAA
1 TAAAAATTTT-AAACTTATATTTTAA
*
7998217 TAAAATTTTTAAACTTATATTTT
1 TAAAAATTTTAAACTTATATTTT
7998240 TTAATTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (25 bp):
TAAAAATTTTAAACTTATATTTTAA
Found at i:7998392 original size:27 final size:26
Alignment explanation
Indices: 7998347--7998397 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
7998337 ATTATAAATT
* * *
7998347 ATTTTTAATAATTAGATAATAAATAGA
1 ATTTTCAATAATCACATAA-AAATAGA
7998374 ATTTTCAATAATCACATAAAAATA
1 ATTTTCAATAATCACATAAAAATA
7998398 ATAAGAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.24
27 16 0.76
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.37
Consensus pattern (26 bp):
ATTTTCAATAATCACATAAAAATAGA
Found at i:8001111 original size:17 final size:17
Alignment explanation
Indices: 8001094--8001125 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8001084 TTTAAAATAT
8001094 TTTTATTT-TTTATTTA
1 TTTTATTTATTTATTTA
8001110 TTTTATTTATTTATTT
1 TTTTATTTATTTATTT
8001126 TTCTTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTATTTATTTATTTA
Found at i:8001132 original size:13 final size:12
Alignment explanation
Indices: 8001095--8001133 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
8001085 TTAAAATATT
8001095 TTTA-TTTTTTA
1 TTTATTTTTTTA
8001106 TTTATTTTATTTA
1 TTTATTTT-TTTA
8001119 TTTATTTTTCTTA
1 TTTATTTTT-TTA
8001132 TT
1 TT
8001134 ATGTCATTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.16
12 4 0.16
13 17 0.68
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTATTTTTTTA
Found at i:8007896 original size:18 final size:18
Alignment explanation
Indices: 8007869--8007903 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8007859 AAATTTCCAT
*
8007869 TATTTTACAATAAAAATC
1 TATTTGACAATAAAAATC
*
8007887 TATTTGACAATACAAAT
1 TATTTGACAATAAAAAT
8007904 TTAGGTAGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.11, G:0.03, T:0.37
Consensus pattern (18 bp):
TATTTGACAATAAAAATC
Found at i:8012472 original size:22 final size:21
Alignment explanation
Indices: 8012446--8012508 Score: 69
Period size: 20 Copynumber: 3.0 Consensus size: 21
8012436 AGATATAAAC
8012446 TTAATAAATAATATATTTATA
1 TTAATAAATAATATATTTATA
8012467 TATAATTAAGAT-ATA-ATTTATA
1 T-TAA-TAA-ATAATATATTTATA
*
8012489 TTAAAAAATAATAT-TTTATA
1 TTAATAAATAATATATTTATA
8012509 AATATTATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
19 2 0.06
20 11 0.31
21 4 0.11
22 11 0.31
23 6 0.17
24 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TTAATAAATAATATATTTATA
Found at i:8012889 original size:12 final size:12
Alignment explanation
Indices: 8012874--8012932 Score: 64
Period size: 12 Copynumber: 4.7 Consensus size: 12
8012864 AAATTATTTT
8012874 TTTAATTTTATA
1 TTTAATTTTATA
*
8012886 TTTAATTATATA
1 TTTAATTTTATA
**
8012898 TTTTTTTTTATATA
1 -TTTAATTT-TATA
8012912 TTTAATTTTATA
1 TTTAATTTTATA
8012924 TTTATATTT
1 TTTA-ATTT
8012933 AAAATAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
12 19 0.50
13 15 0.39
14 4 0.11
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTAATTTTATA
Found at i:8012910 original size:14 final size:14
Alignment explanation
Indices: 8012874--8012924 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
8012864 AAATTATTTT
8012874 TTTAA-TTT-TATA
1 TTTAATTTTATATA
8012886 TTTAA--TTATATA
1 TTTAATTTTATATA
**
8012898 TTTTTTTTTATATA
1 TTTAATTTTATATA
8012912 TTTAATTTTATAT
1 TTTAATTTTATAT
8012925 TTATATTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 2 0.06
12 12 0.38
14 18 0.56
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTAATTTTATATA
Found at i:8012911 original size:26 final size:27
Alignment explanation
Indices: 8012868--8012926 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
8012858 ATAAAAAAAT
*
8012868 TATTTTTTTAATTTTATATTTAATTATA
1 TATTTTTTT-ATTATATATTTAATTATA
*
8012896 TATTTTTTT-TTATATATTTAATTTTA
1 TATTTTTTTATTATATATTTAATTATA
8012922 TATTT
1 TATTT
8012927 ATATTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 20 0.69
28 9 0.31
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (27 bp):
TATTTTTTTATTATATATTTAATTATA
Found at i:8012920 original size:18 final size:18
Alignment explanation
Indices: 8012874--8012934 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 18
8012864 AAATTATTTT
8012874 TTTAATTTTATATTTA-A
1 TTTAATTTTATATTTATA
* *
8012891 TTATATATTTTTTTTTATATA
1 TT-TA-ATTTTATATT-TATA
8012912 TTTAATTTTATATTTATA
1 TTTAATTTTATATTTATA
8012930 TTTAA
1 TTTAA
8012935 AATAATATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
17 2 0.06
18 11 0.31
19 16 0.44
20 4 0.11
21 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTAATTTTATATTTATA
Found at i:8012933 original size:26 final size:26
Alignment explanation
Indices: 8012865--8012933 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
8012855 TATATAAAAA
* *
8012865 AATTATTTTTTTA-ATTT-TATATTT
1 AATTATATATTTATATTTATATATTT
* *
8012889 AATTATATATTTTTTTTTATATATTT
1 AATTATATATTTATATTTATATATTT
*
8012915 AATTTTATATTTATATTTA
1 AATTATATATTTATATTTA
8012934 AAATAATATT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 10 0.28
25 3 0.08
26 23 0.64
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (26 bp):
AATTATATATTTATATTTATATATTT
Found at i:8013542 original size:2 final size:2
Alignment explanation
Indices: 8013535--8013566 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8013525 AAACAAGTAC
8013535 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8013567 GAAGTGGCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8015314 original size:16 final size:15
Alignment explanation
Indices: 8015293--8015337 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
8015283 TATTTAATTA
8015293 ATTTAATAATAAATAT
1 ATTTAA-AATAAATAT
*
8015309 ATTTAAATTAAATTAT
1 ATTTAAAATAAA-TAT
*
8015325 ATTTTAAATAAAT
1 ATTTAAAATAAAT
8015338 TAAATAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 6 0.24
16 19 0.76
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTTAAAATAAATAT
Found at i:8015338 original size:16 final size:15
Alignment explanation
Indices: 8015300--8015339 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
8015290 TTAATTTAAT
8015300 AATAAA-TATATTTA
1 AATAAATTATATTTA
8015314 AATTAAATTATATTTTA
1 AA-TAAATTATA-TTTA
8015331 AATAAATTA
1 AATAAATTA
8015340 AATAAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 2 0.09
15 4 0.17
16 11 0.48
17 6 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATAAATTATATTTA
Found at i:8015358 original size:26 final size:27
Alignment explanation
Indices: 8015298--8015369 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 27
8015288 AATTAATTTA
* *
8015298 ATAATAAATATATTTAAATTAAATTAT
1 ATAATAAATATAATTAAATAAAATTAT
**
8015325 ATTTTAAATA-AATTAAATAAAATTAT
1 ATAATAAATATAATTAAATAAAATTAT
* *
8015351 CTAATAAA-ATATTTAAATA
1 ATAATAAATATAATTAAATA
8015370 TTATGTTAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
25 1 0.03
26 27 0.75
27 8 0.22
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (27 bp):
ATAATAAATATAATTAAATAAAATTAT
Found at i:8026896 original size:27 final size:27
Alignment explanation
Indices: 8026844--8026896 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
8026834 CAAATTTTTC
* *
8026844 TTATAAAAAAATTAATTCATATAATTA
1 TTATAAAAAAAATAATTAATATAATTA
*
8026871 TTATAAAAAATAATATTTAATA-AATT
1 TTATAAAAAA-AATAATTAATATAATT
8026897 TAAAATTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 14 0.64
28 8 0.36
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (27 bp):
TTATAAAAAAAATAATTAATATAATTA
Found at i:8026923 original size:16 final size:16
Alignment explanation
Indices: 8026871--8026924 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
8026861 CATATAATTA
*
8026871 TTATAAAAAATAATAT
1 TTATAAATAATAATAT
* *
8026887 TTAATAAAT-TTAA-AA
1 TT-ATAAATAATAATAT
8026902 TT-TAAATAATAATAT
1 TTATAAATAATAATAT
8026917 TTATAAAT
1 TTATAAAT
8026925 TTTTTATATT
Statistics
Matches: 29, Mismatches: 5, Indels: 8
0.69 0.12 0.19
Matches are distributed among these distances:
13 5 0.17
14 3 0.10
15 6 0.21
16 10 0.34
17 5 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TTATAAATAATAATAT
Found at i:8034457 original size:1 final size:1
Alignment explanation
Indices: 8034451--8034475 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
8034441 TTAATGGAGG
8034451 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
8034476 CTGATGAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:8038362 original size:24 final size:24
Alignment explanation
Indices: 8038334--8038379 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
8038324 TTTTTCCGGT
*
8038334 TCCTCATTACAGTTATTGCTAGGG
1 TCCTCATTACAGCTATTGCTAGGG
*
8038358 TCCTCATTGCAGCTATTGCTAG
1 TCCTCATTACAGCTATTGCTAG
8038380 AGACTAAGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.37
Consensus pattern (24 bp):
TCCTCATTACAGCTATTGCTAGGG
Found at i:8043930 original size:23 final size:23
Alignment explanation
Indices: 8043904--8043948 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8043894 TTTATACATG
* *
8043904 TTTATGCATATATTCGTTTAATA
1 TTTATGAATAAATTCGTTTAATA
*
8043927 TTTATGAATAAATTTGTTTAAT
1 TTTATGAATAAATTCGTTTAAT
8043949 TTAATCAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.53
Consensus pattern (23 bp):
TTTATGAATAAATTCGTTTAATA
Found at i:8047761 original size:228 final size:227
Alignment explanation
Indices: 8047353--8047972 Score: 581
Period size: 228 Copynumber: 2.7 Consensus size: 227
8047343 CCATCACTAA
* * * *
8047353 CCACCACGAAGGCGAAGGACCAGATGCAAGGTTGATTCCTTCTGGATGTTGCAGTCTGCCAGGGT
1 CCACCACGAAGGCGAAGGACCAGATGCAAGGTTGACTCCTTCTGAATGTAGCAGTCTGCAAGGGT
* * * * * * * * *
8047418 CCTCCCATCTTCAAGTTGCTTTCCTGCAAATATCAGCCTCTGCTGGTCTGGGGGGCTTCCTTCCT
66 CCTCCCATCCTCAAGCTGCTTACCAGCAAATATCAGCCTCTGCTGGTCCGGAGGGATACCTTACT
* * * *
8047483 TATCCTGGATCTTGGCCTTAACATTATCAATGGTATCTGAGCTTTCAACTTCC-AGAGTGATGGT
131 TATCCTGAATCTTCGCCTTAACATTATCAATGGTATCAGAGCTCTCAACTTCCAAG-GTGATGGT
8047547 CATTCCTGTTAAGGTCTTCATAAAAATTTGCATC
195 C-TTCCTGTTAAGGTCTTCATAAAAATTTGCATC
* * * * * *
8047581 CCACCACGTAGGCGAAGGA-CTGAGTGGAGGGTTGACTCCTTTTGAATGTAGTAGTCTGCAAGGG
1 CCACCACGAAGGCGAAGGACCAGA-TGCAAGGTTGACTCCTTCTGAATGTAGCAGTCTGCAAGGG
8047645 TCCTCCCATCCTCAAGCTGCTTACCAGCAAA-ATTCAGCCTCTGCTGGTCCGGAGGGATACCTTA
65 TCCTCCCATCCTCAAGCTGCTTACCAGCAAATA-TCAGCCTCTGCTGGTCCGGAGGGATACCTTA
* * * * *
8047709 CTTGTCTTGAATTTTCGCCTTGAA-ATTATCAATTGTGTCAGAGCTCTCAACTTCCAAGGTGATG
129 CTTATCCTGAATCTTCGCCTT-AACATTATCAATGGTATCAGAGCTCTCAACTTCCAAGGTGATG
* ** * * *
8047773 GTCTTCCCAG-TAAGTGTCTTCACGAAAATCTGGATA
193 GTCTT-CCTGTTAAG-GTCTTCATAAAAATTTGCATC
* * * * * * * *
8047809 CCACCACGAAGTCGGAGCACCA-AGTGCAAGGTGGACTTCTTCTGGATGTTA-TAGTCAGCAAGG
1 CCACCACGAAGGCGAAGGACCAGA-TGCAAGGTTGACTCCTTCTGAATG-TAGCAGTCTGCAAGG
* * * * * * * * *
8047872 GTCCTGCCATCTTCAAGCTCCTTGCCAGCGAAGATCAACCTTTGCTGGTCTGG-GGGAATACCTT
64 GTCCTCCCATCCTCAAGCTGCTTACCAGCAAATATCAGCCTCTGCTGGTCCGGAGGG-ATACCTT
* * * * * *
8047936 CCTAATCCTGAATTTTAGCCTTAACATTGTCGATGGT
128 ACTTATCCTGAATCTTCGCCTTAACATTATCAATGGT
8047973 GCCAGAACTC
Statistics
Matches: 319, Mismatches: 62, Indels: 22
0.79 0.15 0.05
Matches are distributed among these distances:
227 15 0.05
228 296 0.93
229 8 0.03
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (227 bp):
CCACCACGAAGGCGAAGGACCAGATGCAAGGTTGACTCCTTCTGAATGTAGCAGTCTGCAAGGGT
CCTCCCATCCTCAAGCTGCTTACCAGCAAATATCAGCCTCTGCTGGTCCGGAGGGATACCTTACT
TATCCTGAATCTTCGCCTTAACATTATCAATGGTATCAGAGCTCTCAACTTCCAAGGTGATGGTC
TTCCTGTTAAGGTCTTCATAAAAATTTGCATC
Found at i:8049994 original size:24 final size:24
Alignment explanation
Indices: 8049967--8050013 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
8049957 TTCTGCAAAA
8049967 AAACAAATTTAATAACACATGAAT
1 AAACAAATTTAATAACACATGAAT
*
8049991 AAACAATTTTAATAACACATGAA
1 AAACAAATTTAATAACACATGAA
8050014 ACAAACATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.57, C:0.13, G:0.04, T:0.26
Consensus pattern (24 bp):
AAACAAATTTAATAACACATGAAT
Found at i:8050017 original size:21 final size:22
Alignment explanation
Indices: 8049966--8050018 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 22
8049956 TTTCTGCAAA
8049966 AAAACAAATTTAATAACACATG
1 AAAACAAATTTAATAACACATG
*
8049988 AATAAACAATTTTAATAACACATG
1 -A-AAACAAATTTAATAACACATG
8050012 -AAACAAA
1 AAAACAAA
8050019 CATCTCAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 6 0.22
23 1 0.04
24 20 0.74
ACGTcount: A:0.60, C:0.13, G:0.04, T:0.23
Consensus pattern (22 bp):
AAAACAAATTTAATAACACATG
Found at i:8053098 original size:228 final size:225
Alignment explanation
Indices: 8052699--8054032 Score: 1144
Period size: 228 Copynumber: 5.9 Consensus size: 225
8052689 ATGCAGAGTG
* * * * * * * *
8052699 GACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGGCCATCCTCCAA-CTGCTTCCCAGCAAAGA
1 GACTCCTTCTGGATGTTGTAGTCTGCAAGGGTCCTGCCATCCT-CAAGCTGCTTTCCAGCAAAAA
* * * * * * * * *
8052763 TCAACCTCTGCTGGTCCGGAGGAATTCCC-TCCTTGTCCTGAATCTTTGCTTTCACATTGTCAAT
65 TCAACCTCTGTTGGTCTGGTGGGA-TCCCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAAT
* * ** * * * * *
8052827 CGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTCTTGACAAATATTTGCA
129 CGTGTCAGAGCTCTCCACCTCCAAAGTAATGGTTTT-CCAGT-AAGGTTTTCACAAAAATCTGCA
* * * * * *
8052892 TCCCTCCTCTAAGACGCAAAACCAAATGCAGGGTT
192 TGCCACCCCTAAGACG-AACACCAAGTGGAGGGTT
* * * * * * * *
8052927 GACTCCTTTTGTATGTTATAATCTGCAAGCGTCCTCCCATCTTCAAGCTGCTTTCCGGCAAAAAT
1 GACTCCTTCTGGATGTTGTAGTCTGCAAGGGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAAT
* * * * *
8052992 CAACCTTTGTTGGTCTGGTGGGATACCC-TCCTTATCTTGGATCTTGGTCTTCACATTGTCAATT
66 CAACCTCTGTTGGTCTGGTGGGAT-CCCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATC
*
8053056 GTGTCAGAGCTCTCCACCTCCAAAGTAATGGTTTTACCAGTCAAAGTTTTCACAAAAATCTGCAT
130 GTGTCAGAGCTCTCCACCTCCAAAGTAATGGTTTT-CCAGT-AAGGTTTTCACAAAAATCTGCAT
* * ** *
8053121 TCCACCTCGCAGACGCAGCACCAAGTGGAGGGTT
193 GCCACCCCTAAGACG-AACACCAAGTGGAGGGTT
* * * * * * *
8053155 GATTCTTTCTGGATATTGTAATCTGCAAGTGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAAT
1 GACTCCTTCTGGATGTTGTAGTCTGCAAGGGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAAT
* * * * * *
8053220 CAGCCTCTGTTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATGG
66 CAACCTCTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATCG
* * * * * * * * * * *
8053285 TATCAGAACTCTCAACTTCCAACGTAATAGTCTTTCCTGTGAGAGTCTTCACAAAAATTTGCATA
131 TGTCAGAGCTCTCCACCTCCAAAGTAATGGT-TTTCCAGTAAG-GTTTTCACAAAAATCTGCATG
* ** *
8053350 CCACCACGGAGACGTAACACCAAATGGAGGGTT
194 CCACCCCTAAGACG-AACACCAAGTGGAGGGTT
* * * *
8053383 GACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCTGCCATCTTCAAGCTG-TTTCCCAGCAAAAA
1 GACTCCTTCTGGATGTTGTAGTCTGCAAGGGTCCTGCCATCCTCAAGCTGCTTT-CCAGCAAAAA
* * * * *
8053447 TTAACCTCTGCTGGTCTGGTGGGATACCC-TCCTTATCCTGAATCTTTGCCTTAACATTATCAAT
65 TCAACCTCTGTTGGTCTGGTGGGAT-CCCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAAT
* * * * * *
8053511 CGTGTCCGAACTCTCCACCTCCAAAGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATCTGCA
129 CGTGTCAGAGCTCTCCACCTCCAAAGTAATGG-TTTTCCAGT-AAGGTTTTCACAAAAATCTGCA
*
8053576 TGCCACCCCTAAGACGAAGGA-CAAGGTGGAGGG-T
192 TGCCACCCCTAAGACGAA-CACCAA-GTGGAGGGTT
* * *
8053610 -ACTTTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTG-TTTACCAGCAAA
1 GAC--TCCTTCTGGATGTTGTAGTCTGCAAGGGTCCTGCCATCCTCAAGCTGCTTT-CCAGCAAA
* * * * * *
8053673 GATGAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTATCTTGGATCTTGGCCTTGACATTATCGA
63 AATCAACCTCTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAA
* * * * *
8053738 TGGTGTCAGAGCTTTCCACCT-CAAGGGTTATGGTCTTTCCAGTAAGAGTTTTCACAAAGATCTG
128 TCGTGTCAGAGCTCTCCACCTCCAA-AGTAATGGT-TTTCCAGTAAG-GTTTTCACAAAAATCTG
* * *
8053802 CATGCCACCCCTGAGACGAAGGA-CAAGGTGGAGGGTG
190 CATGCCACCCCTAAGACGAA-CACCAA-GTGGAGGGTT
* * * * * *
8053839 GACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGAT
1 GACTCCTTCTGGATGTTGTAGTCTGCAAGGGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAAT
* * *
8053904 -AAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATC
66 CAA-CCTCTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATC
* * * ** * * * * *
8053968 GTGTCTGAGCTTTCCACCTCGAGGGTGATAGTTTTTCCGGTAAGAGTTTTGACAAAGATCTGCAT
130 GTGTCAGAGCTCTCCACCTCCAAAGTAAT-GGTTTTCCAGTAAG-GTTTTCACAAAAATCTGCAT
8054033 CTGTTGTCAA
Statistics
Matches: 920, Mismatches: 163, Indels: 46
0.81 0.14 0.04
Matches are distributed among these distances:
226 2 0.00
227 26 0.03
228 877 0.95
229 13 0.01
230 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (225 bp):
GACTCCTTCTGGATGTTGTAGTCTGCAAGGGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAAT
CAACCTCTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATCG
TGTCAGAGCTCTCCACCTCCAAAGTAATGGTTTTCCAGTAAGGTTTTCACAAAAATCTGCATGCC
ACCCCTAAGACGAACACCAAGTGGAGGGTT
Found at i:8053575 original size:456 final size:454
Alignment explanation
Indices: 8052702--8054032 Score: 1395
Period size: 456 Copynumber: 2.9 Consensus size: 454
8052692 CAGAGTGGAC
* * * * * *
8052702 TCCTTCTGGATATTGTAGTCAGCCAGAGTGCGGCCATCCTCCAA-CTGCTTCCCAGCAAAGATCA
1 TCCTTCTGGATATTGTAATCAGCAAGGGTCCGCCCATCCT-CAAGCTGCTTACCAGCAAAGATCA
* * * * * * * * *
8052766 ACCTCTGCTGGTCCGGAGGAATTCCC-TCCTTGTCCTGAATCTTTGCTTTCACATTGTCAATCGT
65 GCCTCTGTTGGTCTGGTGGAA-TCCCTTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATGGT
* * * * *
8052830 GTCTGAGCTCTCAACCTCCAGGGTGATGGT-TTTCCCAGTCAAG-GTCTTGACAAATATTTGCAT
129 GTCAGAGCTCTCAACCTCCAAGGTAATGGTCTTT-CCAGT-AAGAGTCTTCACAAAAATTTGCAT
* * * * * * * * *
8052893 CCCTCCTCTAAGACGCAAAACCAAATGCAGGGTTGACTCCTTTTGTATGTTATAATCTGCAAGCG
192 ACCACCACTGAGACG-AAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGG
* * * *
8052958 TCCTCCCATCTTCAAGCTGCTTTCCGGCAAAAATCAACCTTTGTTGGTCTGGTGGGATACCCTCC
256 TCCTGCCATCTTCAAGCTG-TTTCCAGCAAAAATTAACCTCTGTTGGTCTGGTGGGATACCCTCC
* * * * *
8053023 TTATCTTGGATCTTGGTCTTCACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTAATGGT
320 TTATCTTGGATCTTGGCCTTAACATTATCAATCGTGTCAGAGCTCTCCACCTCCAAAGTGATGGT
* * * * * *
8053088 TTTACCAGTCAA-AGTTTTCACAAAAATCTGCATTCCACCTCGCAGACGCAGCACCAA-GTGGAG
385 TTTTCCAGT-AAGAGTTTTCACAAAGATCTGCATGCCACCCCGAAGACGAAGCA-CAAGGTGGAG
**
8053151 GGTTGAT
448 GGTACAT
* * * * * *
8053158 TCTTTCTGGATATTGTAATCTGCAAGTGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAG
1 TCCTTCTGGATATTGTAATCAGCAAGGGTCCGCCCATCCTCAAGCTGCTTACCAGCAAAGATCAG
* *
8053223 CCTCTGTTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTAT
66 CCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTGT
* * * * * *
8053288 CAGAACTCTCAACTTCCAACGTAATAGTCTTTCCTGTGAGAGTCTTCACAAAAATTTGCATACCA
131 CAGAGCTCTCAACCTCCAAGGTAATGGTCTTTCCAGTAAGAGTCTTCACAAAAATTTGCATACCA
* * *
8053353 CCACGGAGACGTAACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCT
196 CCACTGAGACG-AAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTCCT
*
8053418 GCCATCTTCAAGCTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTAT
260 GCCATCTTCAAGCTGTTT-CCAGCAAAAATTAACCTCTGTTGGTCTGGTGGGATACCCTCCTTAT
* * * * *
8053483 CCTGAATCTTTGCCTTAACATTATCAATCGTGTCCGAACTCTCCACCTCCAAAGTGATGGTTTTT
324 CTTGGATCTTGGCCTTAACATTATCAATCGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTT
* * * * * *
8053548 CCAGTGAGGGTTTTTACAAAGATCTGCATGCCACCCCTAAGACGAAGGACAAGGTGGAGGGTACT
389 CCAGTAAGAGTTTTCACAAAGATCTGCATGCCACCCCGAAGACGAAGCACAAGGTGGAGGGTACA
8053613 T
454 T
* * * * * *
8053614 TCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGTTTACCAGCAAAGATGAG
1 TCCTTCTGGATATTGTAATCAGCAAGGGTCCGCCCATCCTCAAGCTGCTTACCAGCAAAGATCAG
* * * * * *
8053679 CCTCTGTTGGTCTGGTGGGATCCCTTCCTTATCTTGGATCTTGGCCTTGACATTATCGATGGTGT
66 CCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTGT
* * * * * * *
8053744 CAGAGCTTTCCACCT-CAAGGGTTATGGTCTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCC
131 CAGAGCTCTCAACCTCCAA-GGTAATGGTCTTTCCAGTAAGAGTCTTCACAAAAATTTGCATACC
* * * * * * * *
8053808 ACCCCTGAGACGAAGGA-CAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTG
195 ACCACTGAGACGAA-AACCAA-ATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTC
* * * * *
8053872 CGGCCATCCTCAAGTTGCTTACCAGCAAAGA-TAAGCCTCTGTTGGTCTGGTGGGAT-CCCTTCC
258 CTGCCATCTTCAAGCTG-TTTCCAGCAAAAATTAA-CCTCTGTTGGTCTGGTGGGATACCC-TCC
* * * * * ** *
8053935 TTGTCTTGGATCTTGGCCTTGACATTATCAATCGTGTCTGAGCTTTCCACCTCGAGGGTGATAGT
320 TTATCTTGGATCTTGGCCTTAACATTATCAATCGTGTCAGAGCTCTCCACCTCCAAAGTGATGGT
* *
8054000 TTTTCCGGTAAGAGTTTTGACAAAGATCTGCAT
385 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT
8054033 CTGTTGTCAA
Statistics
Matches: 724, Mismatches: 138, Indels: 26
0.82 0.16 0.03
Matches are distributed among these distances:
455 30 0.04
456 689 0.95
457 5 0.01
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (454 bp):
TCCTTCTGGATATTGTAATCAGCAAGGGTCCGCCCATCCTCAAGCTGCTTACCAGCAAAGATCAG
CCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTGT
CAGAGCTCTCAACCTCCAAGGTAATGGTCTTTCCAGTAAGAGTCTTCACAAAAATTTGCATACCA
CCACTGAGACGAAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTCCTG
CCATCTTCAAGCTGTTTCCAGCAAAAATTAACCTCTGTTGGTCTGGTGGGATACCCTCCTTATCT
TGGATCTTGGCCTTAACATTATCAATCGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTTCC
AGTAAGAGTTTTCACAAAGATCTGCATGCCACCCCGAAGACGAAGCACAAGGTGGAGGGTACAT
Found at i:8055341 original size:12 final size:12
Alignment explanation
Indices: 8055320--8055352 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8055310 AATAAATTTT
8055320 AAAT-TTTAATA
1 AAATATTTAATA
8055331 AAATATTTAATA
1 AAATATTTAATA
*
8055343 TAATATTTAA
1 AAATATTTAA
8055353 ATTTAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
AAATATTTAATA
Found at i:8055392 original size:13 final size:13
Alignment explanation
Indices: 8055322--8055392 Score: 56
Period size: 13 Copynumber: 5.3 Consensus size: 13
8055312 TAAATTTTAA
*
8055322 ATTTTAATAAAAT
1 ATTTTAATATAAT
8055335 A-TTTAATATAAT
1 ATTTTAATATAAT
* *
8055347 ATTTAAATTTAAAAAT
1 ATTTTAA--T-ATAAT
*
8055363 TTTTTAATATAAT
1 ATTTTAATATAAT
8055376 ATTTTAACTATAA-
1 ATTTTAA-TATAAT
8055389 ATTT
1 ATTT
8055393 ATTAACAAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
12 11 0.24
13 19 0.41
14 6 0.13
15 1 0.02
16 9 0.20
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTTTAATATAAT
Found at i:8055456 original size:27 final size:28
Alignment explanation
Indices: 8055420--8055487 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
8055410 ATTTAGTATC
* *
8055420 ATATTA-ATTAATAAATTTATAATTTAA-
1 ATATTATATTAAAAAATTT-TAAATTAAT
8055447 AT-TTATATTAAAAAAATTTTAAATTAAT
1 ATATTATATT-AAAAAATTTTAAATTAAT
8055475 ATATTATATTAAA
1 ATATTATATTAAA
8055488 TATTTTACTA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
26 3 0.09
27 12 0.34
28 13 0.37
29 7 0.20
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (28 bp):
ATATTATATTAAAAAATTTTAAATTAAT
Found at i:8055482 original size:29 final size:29
Alignment explanation
Indices: 8055420--8055487 Score: 81
Period size: 27 Copynumber: 2.4 Consensus size: 29
8055410 ATTTAGTATC
* *
8055420 ATATTA-ATT-AATAAATTTATAATTTAA
1 ATATTATATTAAAAAAATTTATAAATTAA
8055447 AT-TTATATTAAAAAAATTT-TAAATTAA
1 ATATTATATTAAAAAAATTTATAAATTAA
8055474 TATATTATATTAAA
1 -ATATTATATTAAA
8055488 TATTTTACTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 3 0.09
27 12 0.34
28 10 0.29
29 10 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
ATATTATATTAAAAAAATTTATAAATTAA
Found at i:8057490 original size:228 final size:226
Alignment explanation
Indices: 8057127--8058221 Score: 1089
Period size: 228 Copynumber: 4.8 Consensus size: 226
8057117 TTCTTTCTGT
* * * * * * *
8057127 ATGTTGTAGTCTGCCAGGGTCCTCCCATCTTCAAGTTGCTTCCCTGCAAATATCAGCCTCTGCTG
1 ATGTTGTAGTCAGCCAGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGCTG
* * * * * * * * *
8057192 ATCTGGGGGGATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTATCAATAGTATCTGAGCTTT
66 GTCT-GGGGGATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATGGTGTCAGAGCTCT
* *
8057257 CAACTTCCAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAAATTTGCATCCCACCACGAAGG
130 CAACCTCCA-AGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATTTGCATCCCACCACGAAGG
* *
8057322 CGAAGCACCAAGTGGAGGGTTGACTCCTTTTGA
194 CGAAGCACCAAGTGGAGGGTGGACTCCTTTTGG
* * * * *
8057355 ATGTTGTAGTCGGCAAGGGTCCTTCCATCCTCAAGCTGCTTACCAGCAAAAATTAGCCTCTGCTG
1 ATGTTGTAGTCAGCCAGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGCTG
* * * * * * *
8057420 ATCCGGAGGGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCAATTGTGTCAGAGCTCT
66 GTCTGG-GGGATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATGGTGTCAGAGCTCT
* * * * *
8057485 CAACTTCCAAAGTGATGGTCTTCCCAGT-AAGTGTCTTCACGAAAATCTGCATACCACCACGAAG
130 CAACCTCC-AAGTGATGGTCTTTCCAGTCAAG-GTCTTCACAAAAATTTGCATCCCACCACGAAG
* * * * * * *
8057549 TCGGAGCACTAAGTGCAAGGTCGACTCCTTCTGG
193 GCGAAGCACCAAGTGGAGGGTGGACTCCTTTTGG
* * * * * * * *
8057583 ATGTTATAGTCAGCAAGGGTCCTGCCATCTTCGAGCTGCTTGCCAGCAAAGATTAACCTTTGCTG
1 ATGTTGTAGTCAGCCAGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGCTG
* * * * * *
8057648 GTCTGGGGGAATACCTTCTTTATCCTGAATTTTAGCCTTGACATTGTCAATGGTGTCAGAACTCT
66 GTCTGGGGG-ATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATGGTGTCAGAGCTCT
* * * * * * *
8057713 CTACCTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTCACAAAGATTTGCATTCCTCCGCGCAGG
130 CAACCTCCAA-GTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATTTGCATCCCACCACGAAGG
* * *
8057778 CGGAGCACCAAGTGGAGCGTGGACTCCTTCTGG
194 CGAAGCACCAAGTGGAGGGTGGACTCCTTTTGG
* * * * *
8057811 ATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGTTGCTTACCAGCAAATATCAACCTCTGCTG
1 ATGTTGTAGTCAGCCAGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGCTG
* * * * * * *
8057876 GTCTGGCGGAATACCCTCCTTGTCCTGGATCTTT-GACTTAACATTATCGATGGTGTCTGAACTC
66 GTCTGG-GGGATACCTTCCTTGTCCTGGAT-TTTGGCCTTGACATTATCAATGGTGTCAGAGCTC
* * * * * *
8057940 TCTACCTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTAACAAAGATTTGCATTCCTCCACGAAG
129 TCAACCTCCAA-GTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATTTGCATCCCACCACGAAG
* *
8058005 CCGAAGCACCAAATGGAGGGTGGACTCCTTTTGG
193 GCGAAGCACCAAGTGGAGGGTGGACTCCTTTTGG
* * * * * * *
8058039 ATGTTGTAGTCAGCCAGGGTACGGCCATCCTCCAGCTGTTTACCAGCAAAGATAAGCCTTTGTTG
1 ATGTTGTAGTCAGCCAGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGCTG
* * * * * *
8058104 GTCTGGTGGAATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATGGTGTCAGAGCTTT
66 GTCTGG-GGGATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATGGTGTCAGAGCTCT
* * * * * *
8058169 CCACCT-CAAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACAAATATTTGCATC
130 CAACCTCCAA--GTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATTTGCATC
8058222 TATTTAGAAT
Statistics
Matches: 733, Mismatches: 124, Indels: 20
0.84 0.14 0.02
Matches are distributed among these distances:
227 15 0.02
228 709 0.97
229 9 0.01
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (226 bp):
ATGTTGTAGTCAGCCAGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGCTG
GTCTGGGGGATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATGGTGTCAGAGCTCTC
AACCTCCAAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAAATTTGCATCCCACCACGAAGGCG
AAGCACCAAGTGGAGGGTGGACTCCTTTTGG
Found at i:8057962 original size:456 final size:455
Alignment explanation
Indices: 8057081--8058221 Score: 1212
Period size: 456 Copynumber: 2.5 Consensus size: 455
8057071 TCACTTAGAA
* * * * * * * * *
8057081 ACCACCCCGAAGGCGAAGGACCAGATGCAAGGTTGATTCTTTCTGTATGTTGTAGTCTGCCAGGG
1 ACCACCACGAAGCCGAAGCACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGG
* * * * * * * * * * *
8057146 TCCTCCCATCTTCAAGTTGCTTCCCTGCAAATATCAGCCTCTGCTGATCTGGGGGGATTCCTTCC
66 TCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTTTGCTGGTCTGGGGGAATACCTTCC
* * * * *
8057211 TTATCCTGGATCTTGGCCTTAACATTATCAATAGTATCTGAGCTTTCAACTTCCAGAGTGATGGT
131 TTATCCTGGATCTTGGCCTTGACATTATCAATGGTGTCAGAGCTTTCAACCTCCA-AGTGATGGT
* *
8057276 CTTTCCTGTCAAGGTCTTCACAAAAATTTGCATCCCACCACGAAGGCGAAGCACCAAGTGGAGGG
195 CTTTCCAGTCAAGGTCTTCACAAAAATTTGCATCCCACCACGAAGGCGAAGCACCAAGTGGAGCG
* * * **
8057341 TTGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTCCTTCCATCCTCAAGCTGCTTACCAGCAAAA
260 TGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCGGCCATCCTCAAGCTGCTTACCAGCAAAA
* * * * * * * * *
8057406 ATTAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCAAT
325 ATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATTTTGGACTTAACATTATCAAT
* * * * *
8057471 TGTGTCAGAGCTCTCAACTTCCAAAGTGATGGTCTTCCCAGT-AAGTGTCTTCACGAAA-ATCTG
390 GGTGTCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCAGTCAAG-GTCTTAAC-AAAGATCTG
8057534 CAT
453 CAT
* * * * * *
8057537 ACCACCACGAAGTCGGAGCACTAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCAAGGG
1 ACCACCACGAAGCCGAAGCACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGG
* * *
8057602 TCCTGCCATCTTCGAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGGTCTGGGGGAATACCTTCT
66 TCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTTTGCTGGTCTGGGGGAATACCTTCC
* * * * * * * *
8057667 TTATCCTGAATTTTAGCCTTGACATTGTCAATGGTGTCAGAACTCTCTACCTCCAATGTAATGGT
131 TTATCCTGGATCTTGGCCTTGACATTATCAATGGTGTCAGAGCTTTCAACCTCCAA-GTGATGGT
* * * * * *
8057732 CTTTCCAGTCAAGGTCTTCACAAAGATTTGCATTCCTCCGCGCAGGCGGAGCACCAAGTGGAGCG
195 CTTTCCAGTCAAGGTCTTCACAAAAATTTGCATCCCACCACGAAGGCGAAGCACCAAGTGGAGCG
* * * * *
8057797 TGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAT
260 TGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCGGCCATCCTCAAGCTGCTTACCAGCAAAA
* * * * *
8057862 ATCAACCTCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTT-GACTTAACATTATCGA
325 ATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAAT-TTTGGACTTAACATTATCAA
* * * * *
8057926 TGGTGTCTGAACTCTCTACCTCCAATGTAATGGTCTTTCCAGTCAAGGTCTTAACAAAGATTTGC
389 TGGTGTCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCAGTCAAGGTCTTAACAAAGATCTGC
8057991 AT
454 AT
* * * * * *
8057993 TCCTCCACGAAGCCGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCCAGGG
1 ACCACCACGAAGCCGAAGCACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGG
* * * * * * * *
8058058 TACGGCCATCCTCCAGCTGTTTACCAGCAAAGA-TAAGCCTTTGTTGGTCTGGTGGAATCCCTTC
66 TCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATTAA-CCTTTGCTGGTCTGGGGGAATACCTTC
* * * *
8058122 CTTGTCTTGGATCTTGGCCTTGACATTATCGATGGTGTCAGAGCTTTCCACCT-CAAGGGTGATG
130 CTTATCCTGGATCTTGGCCTTGACATTATCAATGGTGTCAGAGCTTTCAACCTCCAA--GTGATG
* * * * *
8058186 GTCTTGCCAGTGAGGGTCTTAACAAATATTTGCATC
193 GTCTTTCCAGTCAAGGTCTTCACAAAAATTTGCATC
8058222 TATTTAGAAT
Statistics
Matches: 557, Mismatches: 122, Indels: 12
0.81 0.18 0.02
Matches are distributed among these distances:
455 10 0.02
456 541 0.97
457 6 0.01
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (455 bp):
ACCACCACGAAGCCGAAGCACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGG
TCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTTTGCTGGTCTGGGGGAATACCTTCC
TTATCCTGGATCTTGGCCTTGACATTATCAATGGTGTCAGAGCTTTCAACCTCCAAGTGATGGTC
TTTCCAGTCAAGGTCTTCACAAAAATTTGCATCCCACCACGAAGGCGAAGCACCAAGTGGAGCGT
GGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCGGCCATCCTCAAGCTGCTTACCAGCAAAAA
TCAACCTCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGAATTTTGGACTTAACATTATCAATG
GTGTCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCAGTCAAGGTCTTAACAAAGATCTGCAT
Found at i:8059788 original size:13 final size:13
Alignment explanation
Indices: 8059772--8059798 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8059762 AACTCGGTCT
8059772 TCACCATTTAGAA
1 TCACCATTTAGAA
8059785 TCACCATTTAGAA
1 TCACCATTTAGAA
8059798 T
1 T
8059799 ATAGAACTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (13 bp):
TCACCATTTAGAA
Found at i:8059908 original size:23 final size:22
Alignment explanation
Indices: 8059882--8059925 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
8059872 AATTTTCTCT
*
8059882 TTTTTTTCTTTACTTTTTTTGGC
1 TTTTTTTCTTT-CTCTTTTTGGC
8059905 TTTTTTTCTTTCTCTTTTTGG
1 TTTTTTTCTTTCTCTTTTTGG
8059926 TTTACGACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.02, C:0.14, G:0.09, T:0.75
Consensus pattern (22 bp):
TTTTTTTCTTTCTCTTTTTGGC
Found at i:8064831 original size:19 final size:18
Alignment explanation
Indices: 8064807--8064860 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
8064797 TCAATATGAA
8064807 TTATATAATATGATA-ATTT
1 TTATATAATAT-ATATA-TT
*
8064826 TTATATATTATATATATT
1 TTATATAATATATATATT
*
8064844 TTATATGAATAAATATA
1 TTATAT-AATATATATA
8064861 ATACAGACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 11 0.37
19 19 0.63
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (18 bp):
TTATATAATATATATATT
Found at i:8065071 original size:19 final size:18
Alignment explanation
Indices: 8065047--8065100 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
8065037 TCAATATGAA
8065047 TTATATAATATGATA-ATTT
1 TTATATAATAT-ATATA-TT
*
8065066 TTATATATTATATATATT
1 TTATATAATATATATATT
*
8065084 TTATATGAATAAATATA
1 TTATAT-AATATATATA
8065101 ATACAGACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 11 0.37
19 19 0.63
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (18 bp):
TTATATAATATATATATT
Found at i:8065183 original size:240 final size:240
Alignment explanation
Indices: 8064760--8065241 Score: 955
Period size: 240 Copynumber: 2.0 Consensus size: 240
8064750 AACCAATTAC
8064760 ATAGGGTTAGACCCCATTTTCCTAACATAACTTATTATCAATATGAATTATATAATATGATAATT
1 ATAGGGTTAGACCCCATTTTCCTAACATAACTTATTATCAATATGAATTATATAATATGATAATT
8064825 TTTATATATTATATATATTTTATATGAATAAATATAATACAGACATACAAATTATCAAGTTTATA
66 TTTATATATTATATATATTTTATATGAATAAATATAATACAGACATACAAATTATCAAGTTTATA
8064890 AAATTATATATTTAAACTATTTTTTGTAAAATAAAATCGTAAAATCTTCTAGTTAAAGTGAATAA
131 AAATTATATATTTAAACTATTTTTTGTAAAATAAAATCGTAAAATCTTCTAGTTAAAGTGAATAA
8064955 TACATCGTAAATTGACTGCAAGTCTCCATAAATTATATCAAAGTG
196 TACATCGTAAATTGACTGCAAGTCTCCATAAATTATATCAAAGTG
8065000 ATAGGGTTAGACCCCATTTTCCTAACATAACTTATTATCAATATGAATTATATAATATGATAATT
1 ATAGGGTTAGACCCCATTTTCCTAACATAACTTATTATCAATATGAATTATATAATATGATAATT
8065065 TTTATATATTATATATATTTTATATGAATAAATATAATACAGACATACAAATTATCAAGTTTATA
66 TTTATATATTATATATATTTTATATGAATAAATATAATACAGACATACAAATTATCAAGTTTATA
*
8065130 AATTTATATATTTAAACTATTTTTTGTAAAATAAAATCGTAAAATCTTCTAGTTAAAGTGAATAA
131 AAATTATATATTTAAACTATTTTTTGTAAAATAAAATCGTAAAATCTTCTAGTTAAAGTGAATAA
8065195 TACATCGTAAATTGACTGCAAGTCTCCATAAATTATATCAAAGTG
196 TACATCGTAAATTGACTGCAAGTCTCCATAAATTATATCAAAGTG
8065240 AT
1 AT
8065242 TACCAGTTGA
Statistics
Matches: 241, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
240 241 1.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.39
Consensus pattern (240 bp):
ATAGGGTTAGACCCCATTTTCCTAACATAACTTATTATCAATATGAATTATATAATATGATAATT
TTTATATATTATATATATTTTATATGAATAAATATAATACAGACATACAAATTATCAAGTTTATA
AAATTATATATTTAAACTATTTTTTGTAAAATAAAATCGTAAAATCTTCTAGTTAAAGTGAATAA
TACATCGTAAATTGACTGCAAGTCTCCATAAATTATATCAAAGTG
Found at i:8070020 original size:6 final size:6
Alignment explanation
Indices: 8070006--8070061 Score: 103
Period size: 6 Copynumber: 9.3 Consensus size: 6
8069996 TGGAAACAAG
*
8070006 TATATA TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA
1 TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA
8070054 TATAAA TA
1 TATAAA TA
8070062 AATATATATC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TATAAA
Found at i:8071035 original size:21 final size:24
Alignment explanation
Indices: 8071009--8071054 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 24
8070999 TTGCTTGTTC
*
8071009 TATCATTTA-ATTAA-AA-AAATT
1 TATCATATACATTAATAATAAATT
8071030 TATCATATACATTAATAATAAATT
1 TATCATATACATTAATAATAAATT
8071054 T
1 T
8071055 TTTATTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 5 0.24
23 2 0.10
24 6 0.29
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (24 bp):
TATCATATACATTAATAATAAATT
Found at i:8077732 original size:58 final size:57
Alignment explanation
Indices: 8077663--8077827 Score: 219
Period size: 58 Copynumber: 2.8 Consensus size: 57
8077653 TGCTTTTGTA
*
8077663 CAAGAAAAATTGATACTTTTAACTTTTCTCCAAAAATATTTTTTAGAAAACTTA-TTT
1 CAAGAAAAATTGATACTTTTAACTTTTC-CCAAAAATATCTTTTAGAAAACTTATTTT
*
8077720 CTAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATCTTTTAGAAAAACTTATTTT
1 C-AAGAAAAATTGATACTTTTAACTTTT-CCCAAAAATATCTTTTAG-AAAACTTATTTT
* *
8077780 CAAG-AAAATTAATA-TTTTCAACTTTTCCTCGAAAATATCTTTTAGAAA
1 CAAGAAAAATTGATACTTTT-AACTTTTCC-CAAAAATATCTTTTAGAAA
8077828 TATTTTTTCG
Statistics
Matches: 97, Mismatches: 5, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
57 9 0.09
58 72 0.74
59 12 0.12
60 4 0.04
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (57 bp):
CAAGAAAAATTGATACTTTTAACTTTTCCCAAAAATATCTTTTAGAAAACTTATTTT
Found at i:8077858 original size:71 final size:71
Alignment explanation
Indices: 8077754--8077898 Score: 204
Period size: 71 Copynumber: 2.0 Consensus size: 71
8077744 TTTTCCCCAA
* *
8077754 AAATATCTTTTAGAAAAACTTATTTTCAAGAAAATTAATA-TTTTCAACTTTTCCTCGAAAATAT
1 AAATATCTTTTAGAAAAACTTATTTCCAAGAAAATTAATACTTTT-AACTTTTCCTCAAAAATAT
8077818 CTTTTAG
65 CTTTTAG
* * *
8077825 AAATATTTTTTCG-AAAACTTATTTCCAAGGAAAATTGATACTTTTAACTTTTCCTCAAAAATAT
1 AAATATCTTTTAGAAAAACTTATTTCCAA-GAAAATTAATACTTTTAACTTTTCCTCAAAAATAT
*
8077889 TTTTTAG
65 CTTTTAG
8077896 AAA
1 AAA
8077899 ACTTATTTTC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
70 14 0.21
71 48 0.73
72 4 0.06
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (71 bp):
AAATATCTTTTAGAAAAACTTATTTCCAAGAAAATTAATACTTTTAACTTTTCCTCAAAAATATC
TTTTAG
Found at i:8077944 original size:129 final size:130
Alignment explanation
Indices: 8077696--8077956 Score: 384
Period size: 129 Copynumber: 2.0 Consensus size: 130
8077686 TTTTCTCCAA
*
8077696 AAATATTTTTTAGAAAACTTATTTCTAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATC
1 AAATATTTTTTAGAAAACTTATTTCCAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATC
*
8077761 TTTTAGAAAAACTTATTTTCAAGAAAATTAATATTTTCAACTTTTCCTCGAAAATA-TCTTTTAG
66 TTTTAGAAAAACTTATTTTCAAGAAAATTAATATTTTCAACTTTTCCTCAAAAATATTCTTTTAG
* * * * *
8077825 AAATATTTTTTCGAAAACTTATTTCCAAGGAAAATTGATACTTTTAACTTTTCCTCAAAAATATT
1 AAATATTTTTTAGAAAACTTATTTCCAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATC
* * * *
8077890 TTTTAG-AAAACTTATTTTCAAGGAAAATTGATACTTTT-AACTTTTTCTTAAAAATATTTTTTT
66 TTTTAGAAAAACTTATTTTCAA-GAAAATTAATA-TTTTCAACTTTTCCTCAAAAATATTCTTTT
8077953 AG
129 AG
8077955 AA
1 AA
8077957 TTTTATTTAA
Statistics
Matches: 118, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
128 15 0.13
129 90 0.76
130 13 0.11
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (130 bp):
AAATATTTTTTAGAAAACTTATTTCCAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATC
TTTTAGAAAAACTTATTTTCAAGAAAATTAATATTTTCAACTTTTCCTCAAAAATATTCTTTTAG
Found at i:8077964 original size:58 final size:58
Alignment explanation
Indices: 8077825--8077956 Score: 219
Period size: 58 Copynumber: 2.3 Consensus size: 58
8077815 TATCTTTTAG
*
8077825 AAATATTTTTTCGAAAACTTATTTCCAAGGAAAATTGATACTTTTAACTTTTCCTCAA
1 AAATATTTTTTAGAAAACTTATTTCCAAGGAAAATTGATACTTTTAACTTTTCCTCAA
* * *
8077883 AAATATTTTTTAGAAAACTTATTTTCAAGGAAAATTGATACTTTTAACTTTTTCTTAA
1 AAATATTTTTTAGAAAACTTATTTCCAAGGAAAATTGATACTTTTAACTTTTCCTCAA
8077941 AAATATTTTTTTAGAA
1 AAATA-TTTTTTAGAA
8077957 TTTTATTTAA
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
58 59 0.86
59 10 0.14
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.45
Consensus pattern (58 bp):
AAATATTTTTTAGAAAACTTATTTCCAAGGAAAATTGATACTTTTAACTTTTCCTCAA
Found at i:8077991 original size:13 final size:14
Alignment explanation
Indices: 8077964--8077996 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8077954 GAATTTTATT
8077964 TAAAGAAAATCAAAA
1 TAAA-AAAATCAAAA
8077979 TAAAAAAAT-AAAA
1 TAAAAAAATCAAAA
8077992 TAAAA
1 TAAAA
8077997 TAAGAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 5 0.28
15 4 0.22
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (14 bp):
TAAAAAAATCAAAA
Found at i:8078024 original size:19 final size:19
Alignment explanation
Indices: 8077970--8078031 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
8077960 TATTTAAAGA
8077970 AAATCAAAATAA-AAA-AAT
1 AAAT-AAAATAAGAAATAAT
*
8077988 AAAATAAAATAAGAAATACT
1 -AAATAAAATAAGAAATAAT
*
8078008 AAATAATAATAA-TAATAAT
1 AAATAA-AATAAGAAATAAT
8078027 AAATA
1 AAATA
8078032 TATATATAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 7 0.19
19 23 0.62
20 7 0.19
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.23
Consensus pattern (19 bp):
AAATAAAATAAGAAATAAT
Found at i:8078031 original size:13 final size:12
Alignment explanation
Indices: 8077976--8078031 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 12
8077966 AAGAAAATCA
*
8077976 AAATAAAAAAAT
1 AAATAAAATAAT
*
8077988 AAAATAAAATAAG
1 -AAATAAAATAAT
8078001 AAATACTAAATAAT
1 AAATA--AAATAAT
8078015 -AATAATAATAAT
1 AAATAA-AATAAT
8078027 AAATA
1 AAATA
8078032 TATATATAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 1 0.03
12 11 0.31
13 18 0.50
14 6 0.17
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (12 bp):
AAATAAAATAAT
Found at i:8078040 original size:12 final size:10
Alignment explanation
Indices: 8077977--8078056 Score: 53
Period size: 10 Copynumber: 7.9 Consensus size: 10
8077967 AGAAAATCAA
8077977 AATAAA-AA-
1 AATAAATAAT
8077985 AATAAAATAA-
1 AAT-AAATAAT
8077995 AATAAGA-AAT
1 AATAA-ATAAT
*
8078005 ACTAAATAAT
1 AATAAATAAT
8078015 AAT-AATAAT
1 AATAAATAAT
8078024 AATAAATATAT
1 AATAAATA-AT
*
8078035 ATATAAATGTAT
1 A-ATAAAT-AAT
8078047 AAATAAATAA
1 -AATAAATAA
8078057 ATAACTTATG
Statistics
Matches: 58, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
8 3 0.05
9 17 0.29
10 19 0.33
11 4 0.07
12 14 0.24
13 1 0.02
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.28
Consensus pattern (10 bp):
AATAAATAAT
Found at i:8078980 original size:24 final size:24
Alignment explanation
Indices: 8078882--8079109 Score: 171
Period size: 24 Copynumber: 9.8 Consensus size: 24
8078872 AATTAAAAAA
8078882 ATATATTAATAGATAAATAAT-A-
1 ATATATTAATAGATAAATAATAAT
*
8078904 ATATATGAATAGATAAATAATAAT
1 ATATATTAATAGATAAATAATAAT
* * *
8078928 A-A-A--AAAACATATAT-ATATAT
1 ATATATTAATAGATAAATAATA-AT
8078948 ATATATTAATAGATAAATAATAAT
1 ATATATTAATAGATAAATAATAAT
*
8078972 ATATGTTAATAGATAAATAATAAT
1 ATATATTAATAGATAAATAATAAT
** *
8078996 A-ATAAAAATA-ATAAAATAA-AAA
1 ATATATTAATAGAT-AAATAATAAT
* *
8079018 ATATA-TATTA-ATAAATAATAAA
1 ATATATTAATAGATAAATAATAAT
8079040 ATATATTAATAGATAAATAATTAA-
1 ATATATTAATAGATAAATAA-TAAT
* * *
8079064 AAATTTTATATATTAATAAATAATAAT
1 ATATATTA-ATA--GATAAATAATAAT
8079091 AGTA-A-TAATAGATAAATAA
1 A-TATATTAATAGATAAATAA
8079110 ATAAAAAATA
Statistics
Matches: 166, Mismatches: 21, Indels: 37
0.74 0.09 0.17
Matches are distributed among these distances:
19 3 0.02
20 11 0.07
21 7 0.04
22 40 0.24
23 29 0.17
24 49 0.30
25 12 0.07
26 5 0.03
27 9 0.05
28 1 0.01
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.34
Consensus pattern (24 bp):
ATATATTAATAGATAAATAATAAT
Found at i:8078997 original size:30 final size:30
Alignment explanation
Indices: 8078897--8079000 Score: 86
Period size: 32 Copynumber: 3.3 Consensus size: 30
8078887 TTAATAGATA
8078897 AATAATAATATATG--AATAGATAAATAAT
1 AATAATAATATATGTTAATAGATAAATAAT
* * * *
8078925 AATAAAAAAACATATATATATATATATATTAATAGAT
1 AAT---AATA-ATATATGT-TA-ATAGATAAATA-AT
8078962 AAATAATAATATATGTTAATAGATAAATAAT
1 -AATAATAATATATGTTAATAGATAAATAAT
8078993 AATAATAA
1 AATAATAA
8079001 AAATAATAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
28 3 0.05
30 8 0.14
31 5 0.09
32 15 0.26
33 2 0.03
34 7 0.12
35 4 0.07
36 9 0.16
37 2 0.03
38 3 0.05
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.34
Consensus pattern (30 bp):
AATAATAATATATGTTAATAGATAAATAAT
Found at i:8079032 original size:68 final size:68
Alignment explanation
Indices: 8078863--8079060 Score: 244
Period size: 68 Copynumber: 2.9 Consensus size: 68
8078853 ATCCCAACCG
*
8078863 AAAAGATAAAATTAAAAAAATATATTAATAGATAAATAATAATATATG--AATAGATAAATAATA
1 AAAAAATAAAA-T-AAAAAATATATTAATAGATAAATAATAATATATGTTAATAGATAAATAATA
8078926 ATAAA
64 ATAAA
* * * *
8078931 AAAACAT-ATATATATATATATATTAATAGATAAATAATAATATATGTTAATAGATAAATAATAA
1 AAAAAATAAAATA-AAAAATATATTAATAGATAAATAATAATATATGTTAATAGATAAATAATAA
8078995 TAATA
65 TAA-A
* * *
8079000 AAAATAATAAAATAAAAAATATA-TATTA-ATAAATAATAAAATATATTAATAGATAAATAAT
1 AAAA-AATAAAATAAAAAATATATTAATAGATAAATAATAATATATGTTAATAGATAAATAAT
8079061 TAAAAATTTT
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
65 1 0.01
66 32 0.28
67 2 0.02
68 56 0.50
69 9 0.08
70 9 0.08
71 4 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.32
Consensus pattern (68 bp):
AAAAAATAAAATAAAAAATATATTAATAGATAAATAATAATATATGTTAATAGATAAATAATAAT
AAA
Found at i:8079038 original size:29 final size:27
Alignment explanation
Indices: 8078984--8079042 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 27
8078974 ATGTTAATAG
*
8078984 ATAAATAATAATAATAAAAATAATAAA
1 ATAAAAAATAATAATAAAAATAATAAA
*
8079011 ATAAAAAATATATATTAATAAATAATAAA
1 ATAAAAAATA-ATAATAA-AAATAATAAA
8079040 ATA
1 ATA
8079043 TATTAATAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 9 0.32
28 6 0.21
29 13 0.46
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (27 bp):
ATAAAAAATAATAATAAAAATAATAAA
Found at i:8079050 original size:51 final size:49
Alignment explanation
Indices: 8078955--8079117 Score: 152
Period size: 51 Copynumber: 3.2 Consensus size: 49
8078945 TATATATATT
* * * * *
8078955 AATAGATAAATAATAATATATGTTAATAGATAA-ATAATAATAATA-A-A
1 AATA-ATAAAAAAAAATATATATTAATAAATAATAAAATAATAATAGATA
8079002 AATAATAAAATAAAAAATATATATTAATAAATAATAAAATATATTAATAGATA
1 AATAAT-AAA-AAAAAATATATATTAATAAATAATAAAATA-A-TAATAGATA
* *** *
8079055 AATAATTAAAAATTTTATATATTAATAAATAATAATAGTAATAATAGATA
1 AATAATAAAAAAAAATATATATTAATAAATAATAA-AATAATAATAGATA
8079105 AATAAATAAAAAA
1 AAT-AATAAAAAA
8079118 TAAAAATAAA
Statistics
Matches: 96, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
46 2 0.02
47 7 0.07
48 19 0.20
49 5 0.05
50 13 0.14
51 37 0.39
52 6 0.06
53 7 0.07
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (49 bp):
AATAATAAAAAAAAATATATATTAATAAATAATAAAATAATAATAGATA
Found at i:8079082 original size:68 final size:67
Alignment explanation
Indices: 8078875--8079106 Score: 208
Period size: 68 Copynumber: 3.4 Consensus size: 67
8078865 AAGATAAAAT
* * *
8078875 TAAAAAA-ATATATTAATAGATAAATAATAATATATGAATAGATAAATAATAATAAAAAAACATA
1 TAAAAAATATATATTAATAAAT-AATAA-AATATATTAATAGATAAATAAT-ATAAAAAAATATA
8078939 TAT-A
63 TATAA
* * * * *
8078943 T-ATATATATATTAATAGATAAATAATAATATATGTTAATAGATAAATAATAATAATAAAAATA-
1 TAAAAAATATA-TATTA-ATAAATAATAAAATATATTAATAGATAAATAAT-ATAA-AAAAATAT
*
8079006 ATAAAA
62 ATATAA
**
8079012 TAAAAAATATATATTAATAAATAATAAAATATATTAATAGATAAATAAT-TAAAAATTTTATATA
1 TAAAAAATATATATTAATAAATAATAAAATATATTAATAGATAAATAATATAAAAA-AATATATA
8079076 TTAA
65 -TAA
* *
8079080 TAAATAATA-ATAGTAAT-AATAGATAAA
1 TAAAAAATATATATTAATAAATA-ATAAA
8079107 TAAATAAAAA
Statistics
Matches: 135, Mismatches: 19, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
65 3 0.02
66 9 0.07
67 18 0.13
68 72 0.53
69 21 0.16
70 12 0.09
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (67 bp):
TAAAAAATATATATTAATAAATAATAAAATATATTAATAGATAAATAATATAAAAAAATATATAT
AA
Found at i:8079118 original size:51 final size:48
Alignment explanation
Indices: 8078971--8079118 Score: 158
Period size: 50 Copynumber: 3.0 Consensus size: 48
8078961 TAAATAATAA
* * *
8078971 TATATGTTAATAGATAAATAATAATAATAA-AAAT-AATAAAATAAAAAA-
1 TATATATTAATAAAT-AATAAT-ATAATAATAGATAAAT-AAATAAAAAAT
* * *
8079019 TATATATTAATAAATAATAAAATATATTAATAGATAAATAATTAAAAATTT
1 TATATATTAATAAATAAT--AATATAATAATAGATAAATAAATAAAAA-AT
8079070 TATATATTAATAAATAATAATAGTAATAATAGATAAATAAATAAAAAAT
1 TATATATTAATAAATAATAATA-TAATAATAGATAAATAAATAAAAAAT
8079119 AAAAATAAAA
Statistics
Matches: 84, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
47 3 0.04
48 19 0.23
49 19 0.23
50 25 0.30
51 18 0.21
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (48 bp):
TATATATTAATAAATAATAATATAATAATAGATAAATAAATAAAAAAT
Found at i:8080457 original size:13 final size:13
Alignment explanation
Indices: 8080441--8080483 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
8080431 TTCATTCACT
8080441 TTTTTTCTTTTCA
1 TTTTTTCTTTTCA
8080454 -TTTTT-TTTTCA
1 TTTTTTCTTTTCA
* *
8080465 TGTTTTCATTTCA
1 TTTTTTCTTTTCA
8080478 TTTTTT
1 TTTTTT
8080484 TCTCTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 6 0.24
12 9 0.36
13 10 0.40
ACGTcount: A:0.09, C:0.12, G:0.02, T:0.77
Consensus pattern (13 bp):
TTTTTTCTTTTCA
Found at i:8080494 original size:24 final size:24
Alignment explanation
Indices: 8080439--8080494 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
8080429 TTTTCATTCA
* *
8080439 CTTTTTTTCTTTTCATTTTTTTTT
1 CTTTTTTTCATTTCATTTTTTTCT
* *
8080463 CATGTTTTCATTTCATTTTTTTCT
1 CTTTTTTTCATTTCATTTTTTTCT
8080487 CTTTTTTT
1 CTTTTTTT
8080495 AAGCATAGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.07, C:0.14, G:0.02, T:0.77
Consensus pattern (24 bp):
CTTTTTTTCATTTCATTTTTTTCT
Found at i:8091054 original size:27 final size:26
Alignment explanation
Indices: 8091024--8091121 Score: 67
Period size: 27 Copynumber: 3.5 Consensus size: 26
8091014 TGATAATTTC
8091024 AACTT-TTTCTCAAAAATATTTTTAGAA
1 AACTTATTT-TCAAAAATATTTTTA-AA
* **
8091051 AACTTATTTTCAAGAAAAATTGATACTT-TT
1 AACTTATTTTCAA-AAATATT--T--TTAAA
8091081 AACTT-TTTCTCAAAAATATTTTTTAAA
1 AACTTATTT-TCAAAAATA-TTTTTAAA
8091108 AACTTATTTTCAAA
1 AACTTATTTTCAAA
8091122 GAAAATTGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 20
0.68 0.07 0.25
Matches are distributed among these distances:
26 2 0.04
27 19 0.35
28 13 0.24
29 7 0.13
30 12 0.22
32 2 0.04
ACGTcount: A:0.41, C:0.11, G:0.03, T:0.45
Consensus pattern (26 bp):
AACTTATTTTCAAAAATATTTTTAAA
Done.