Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 41 of 125
Found at i:8091085 original size:30 final size:29
Alignment explanation
Indices: 8090995--8091142 Score: 87
Period size: 29 Copynumber: 5.2 Consensus size: 29
8090985 TTTTAGAAAA
* * *
8090995 AACTTATTTTCAAGAAAATTGATAATTTC
1 AACTTATTTTCAAAAAAATTGATACTTTT
* ** ***
8091024 AACTT-TTTCTCAAAAATATTTTTA--GAA
1 AACTTATTT-TCAAAAAAATTGATACTTTT
8091051 AACTTATTTTCAAGAAAAATTGATACTTTT
1 AACTTATTTTCAA-AAAAATTGATACTTTT
* *
8091081 AACTT-TTTCTCAAAAATATT--T--TTTAAA
1 AACTTATTT-TCAAAAAAATTGATACTTT--T
8091108 AACTTATTTTCAAAGAAAATTGATACTTTT
1 AACTTATTTTCAAA-AAAATTGATACTTTT
8091138 AACTT
1 AACTT
8091143 TTCCTTAAAA
Statistics
Matches: 88, Mismatches: 17, Indels: 27
0.67 0.13 0.20
Matches are distributed among these distances:
25 3 0.03
27 20 0.23
28 22 0.25
29 25 0.28
30 15 0.17
32 3 0.03
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.44
Consensus pattern (29 bp):
AACTTATTTTCAAAAAAATTGATACTTTT
Found at i:8091097 original size:57 final size:58
Alignment explanation
Indices: 8090946--8091166 Score: 333
Period size: 57 Copynumber: 3.8 Consensus size: 58
8090936 GCTTTTGTAT
8090946 AAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAAAACTTATTTTC
1 AAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAG--AAAACTTATTTTC
*
8091006 AAG-AAAATTGATAATTTCAACTTTTTCTCAAAAATA-TTTTTAGAAAACTTATTTTC
1 AAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAACTTATTTTC
*
8091062 AAGAAAAATTGATACTTTTAACTTTTTCTCAAAAATATTTTTTA-AAAACTTATTTTC
1 AAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAACTTATTTTC
* * *
8091119 AA-AGAAAATTGATACTTTTAACTTTTCCTTAAAAATATTTTTTTAGAA
1 AAGA-AAAATTGATACTTTCAACTTTTTCTCAAAAATA-TTTTTTAGAA
8091167 TTTTATTTAA
Statistics
Matches: 151, Mismatches: 5, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
56 17 0.11
57 77 0.51
58 20 0.13
59 34 0.23
60 3 0.02
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.43
Consensus pattern (58 bp):
AAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAACTTATTTTC
Found at i:8091166 original size:116 final size:114
Alignment explanation
Indices: 8090946--8091160 Score: 351
Period size: 116 Copynumber: 1.9 Consensus size: 114
8090936 GCTTTTGTAT
8090946 AAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAAAACTTATTTTCAAGAA
1 AAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTT--AAAAAACTTATTTTCAAGAA
*
8091011 AATTGATAATTTCAACTTTTTCTCAAAAATATTTTTAGAAAACTTATTTTC
64 AATTGATAATTTCAACTTTTCCTCAAAAATATTTTTAGAAAACTTATTTTC
*
8091062 AAGAAAAATTGATACTTTTAACTTTTTCTCAAAAATATTTTTT-AAAAACTTATTTTCAAAGAAA
1 AAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAACTTATTTTC-AAGAAA
* * *
8091126 ATTGATACTTTTAACTTTTCCTTAAAAATATTTTT
65 ATTGATAATTTCAACTTTTCCTCAAAAATATTTTT
8091161 TTAGAATTTT
Statistics
Matches: 93, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
113 14 0.15
114 37 0.40
116 42 0.45
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.44
Consensus pattern (114 bp):
AAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAACTTATTTTCAAGAAAA
TTGATAATTTCAACTTTTCCTCAAAAATATTTTTAGAAAACTTATTTTC
Found at i:8091244 original size:3 final size:3
Alignment explanation
Indices: 8091236--8091261 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8091226 CTAATCAATA
8091236 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
8091262 ATATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8091273 original size:12 final size:12
Alignment explanation
Indices: 8091257--8091288 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
8091247 TAATAATAAT
8091257 AATAAATATATA
1 AATAAATATATA
*
8091269 TATAAATATATA
1 AATAAATATATA
8091281 AATAAATA
1 AATAAATA
8091289 AAACTTCTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AATAAATATATA
Found at i:8092230 original size:64 final size:62
Alignment explanation
Indices: 8092114--8092273 Score: 223
Period size: 64 Copynumber: 2.5 Consensus size: 62
8092104 CCGAAAAGAG
*
8092114 AAAAATAAAATATATATATTAATAGATAAATAATAATATATTAATAGATAAATAATAATAAAA
1 AAAAAT-AATTATATATATTAATAGATAAATAATAATATATTAATAGATAAATAATAATAAAA
* *
8092177 AAAACAT-TTTATATATATTAATAGATAAATAATAATATATGTTAATAGATAAATAATAATAATA
1 AAAA-ATAATTATATATATTAATAGATAAATAATAATATA--TTAATAGATAAATAATAATAAAA
* * *
8092241 ATAAATAATAAAATATATTAATAGATAAATAAT
1 AAAAATAATTATATATATTAATAGATAAATAAT
8092274 TTAAAATTTT
Statistics
Matches: 86, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
62 30 0.35
63 6 0.07
64 50 0.58
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (62 bp):
AAAAATAATTATATATATTAATAGATAAATAATAATATATTAATAGATAAATAATAATAAAA
Found at i:8092245 original size:40 final size:41
Alignment explanation
Indices: 8092195--8092273 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 41
8092185 TTATATATAT
* *
8092195 TAATAGATAAATAATAATATATGTTAATAGATAAATAATAA
1 TAATAGATAAATAATAAAATATATTAATAGATAAATAATAA
8092236 TAATA-ATAAATAATAAAATATATTAATAGATAAATAAT
1 TAATAGATAAATAATAAAATATATTAATAGATAAATAAT
8092274 TTAAAATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
40 31 0.86
41 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (41 bp):
TAATAGATAAATAATAAAATATATTAATAGATAAATAATAA
Found at i:8092246 original size:16 final size:16
Alignment explanation
Indices: 8092219--8092311 Score: 64
Period size: 16 Copynumber: 5.6 Consensus size: 16
8092209 TAATATATGT
8092219 TAATAGATAAATAATAA
1 TAATA-ATAAATAATAA
8092236 TAATAATAAATAATAA
1 TAATAATAAATAATAA
*
8092252 -AATATATTAATAGATAAA
1 TAATA-ATAAATA-AT-AA
* **
8092270 TAAT-TTAAAATTTTATA
1 TAATAAT-AAATAATA-A
*
8092287 TATTAATAAATAATAA
1 TAATAATAAATAATAA
*
8092303 TAGTAATAA
1 TAATAATAA
8092312 TAGATAAATA
Statistics
Matches: 59, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
15 4 0.07
16 27 0.46
17 19 0.32
18 6 0.10
19 3 0.05
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (16 bp):
TAATAATAAATAATAA
Found at i:8092249 original size:27 final size:26
Alignment explanation
Indices: 8092133--8092345 Score: 79
Period size: 24 Copynumber: 8.1 Consensus size: 26
8092123 ATATATATAT
* *
8092133 TAATAGATAAATAAT-AAT-ATATTAA
1 TAATAAAT-AATAATAAATAATAATAA
* * **
8092158 TAGATAAATAATAATAAAAAAAACATTT
1 TA-ATAAATAATAATAAATAATA-ATAA
*
8092186 TATATATATTAATAGATAAATAATAAT-A
1 TA-ATA-AATAATA-ATAAATAATAATAA
**
8092214 T-AT-GTTAATAGATAAATAATAATAA
1 TAATAAATAATA-ATAAATAATAATAA
*
8092239 TAATAAATAAT-A-AAAT-ATATTAA
1 TAATAAATAATAATAAATAATAATAA
* ** *
8092262 TAGATAAATAAT-TTAAAATTTTATATAT
1 TA-ATAAATAATAAT-AAATAATA-ATAA
*
8092290 TAATAAATAATAAT-AGTAATAATAGA
1 TAATAAATAATAATAAATAATAATA-A
* *
8092316 TAAATAAATAAAAATTAAA-AATAAAAA
1 T-AATAAATAATAA-TAAATAATAATAA
8092343 TAA
1 TAA
8092346 CAATGCAAAT
Statistics
Matches: 142, Mismatches: 27, Indels: 37
0.69 0.13 0.18
Matches are distributed among these distances:
23 8 0.06
24 32 0.23
25 14 0.10
26 22 0.15
27 30 0.21
28 19 0.13
29 9 0.06
30 8 0.06
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (26 bp):
TAATAAATAATAATAAATAATAATAA
Found at i:8100155 original size:28 final size:32
Alignment explanation
Indices: 8100093--8100162 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 32
8100083 CCAATATATA
8100093 GAAAAAATGAAGAGCTAGCCATTAAAGATGCTT
1 GAAAAAAT-AAGAGCTAGCCATTAAAGATGCTT
*
8100126 GAAAAAATAA-AG-TAGCCATT-GA-ATGCTT
1 GAAAAAATAAGAGCTAGCCATTAAAGATGCTT
*
8100154 GATAAAATA
1 GAAAAAATA
8100163 GTCGTTAGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 14 0.40
29 1 0.03
30 8 0.23
31 2 0.06
32 2 0.06
33 8 0.23
ACGTcount: A:0.49, C:0.10, G:0.19, T:0.23
Consensus pattern (32 bp):
GAAAAAATAAGAGCTAGCCATTAAAGATGCTT
Found at i:8102513 original size:11 final size:9
Alignment explanation
Indices: 8102478--8102504 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8102468 ATATGTCTTA
8102478 TTTTTAATT
1 TTTTTAATT
8102487 TTTTTAATT
1 TTTTTAATT
8102496 TTTTTAATT
1 TTTTTAATT
8102505 ATATTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTAATT
Found at i:8107329 original size:49 final size:49
Alignment explanation
Indices: 8107257--8107355 Score: 155
Period size: 49 Copynumber: 2.0 Consensus size: 49
8107247 TTTATTGGAG
* *
8107257 ATTGATAGATATTGGTATAGTGAAAGCATATAGTAAGACATTCGAGGGT
1 ATTGATAGATATTGGTACAGTGAAAGCATATAGTAAGACATTCGAAGGT
*
8107306 ATTGATA-ACTATTGGTACAGTGAAAGCATATAGTGAGACATTCGAAGGT
1 ATTGATAGA-TATTGGTACAGTGAAAGCATATAGTAAGACATTCGAAGGT
8107355 A
1 A
8107356 CAAATTCAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
48 1 0.02
49 45 0.98
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.29
Consensus pattern (49 bp):
ATTGATAGATATTGGTACAGTGAAAGCATATAGTAAGACATTCGAAGGT
Found at i:8109870 original size:16 final size:16
Alignment explanation
Indices: 8109849--8109887 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
8109839 TTTTTAAGAA
*
8109849 AAATAAATA-CGCTAGT
1 AAATAAATATC-CTAAT
8109865 AAATAAATATCCTAAT
1 AAATAAATATCCTAAT
8109881 AAATAAA
1 AAATAAA
8109888 ATAAGCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.95
17 1 0.05
ACGTcount: A:0.59, C:0.10, G:0.05, T:0.26
Consensus pattern (16 bp):
AAATAAATATCCTAAT
Found at i:8119055 original size:24 final size:26
Alignment explanation
Indices: 8119011--8119060 Score: 86
Period size: 24 Copynumber: 2.0 Consensus size: 26
8119001 ATTGGAGTCC
8119011 TGTGGAAAACCTAAGAGGTAAAACTG
1 TGTGGAAAACCTAAGAGGTAAAACTG
8119037 TGTGGAAAA-CTAAGA-GTAAAACTG
1 TGTGGAAAACCTAAGAGGTAAAACTG
8119061 AATGTATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 9 0.38
25 6 0.25
26 9 0.38
ACGTcount: A:0.44, C:0.10, G:0.26, T:0.20
Consensus pattern (26 bp):
TGTGGAAAACCTAAGAGGTAAAACTG
Found at i:8123268 original size:22 final size:22
Alignment explanation
Indices: 8123240--8123283 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
8123230 ATTTTTTGTC
8123240 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGGGATACAAATA
8123262 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGGGATACAAATA
8123284 TAAATATACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGGGATACAAATA
Found at i:8126289 original size:6 final size:6
Alignment explanation
Indices: 8126278--8126317 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
8126268 ATTTGAGTCA
*
8126278 AAATTT AAATTTT AAATTTT GAATTT AAATTT AAATTT AA
1 AAATTT AAA-TTT AAA-TTT AAATTT AAATTT AAATTT AA
8126318 TAATATATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 19 0.61
7 12 0.39
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (6 bp):
AAATTT
Found at i:8126291 original size:29 final size:29
Alignment explanation
Indices: 8126227--8126292 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
8126217 TTTGATTTTT
*
8126227 ATTTTAAATTAAATTTGAATTAAAAAATAA
1 ATTTT-AATTAAATTTGAATCAAAAAATAA
* * **
8126257 AATTTAATTAAATTTGAGTCAAAATTTAA
1 ATTTTAATTAAATTTGAATCAAAAAATAA
8126286 ATTTTAA
1 ATTTTAA
8126293 ATTTTGAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.42
Consensus pattern (29 bp):
ATTTTAATTAAATTTGAATCAAAAAATAA
Found at i:8126296 original size:13 final size:13
Alignment explanation
Indices: 8126278--8126315 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
8126268 ATTTGAGTCA
8126278 AAATTTAAATTTT
1 AAATTTAAATTTT
*
8126291 AAATTTTGAA-TTT
1 AAA-TTTAAATTTT
8126304 AAATTTAAATTT
1 AAATTTAAATTT
8126316 AATAATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 5 0.24
13 11 0.52
14 5 0.24
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (13 bp):
AAATTTAAATTTT
Found at i:8128560 original size:24 final size:23
Alignment explanation
Indices: 8128524--8128580 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
8128514 ATTTAATTAA
* **
8128524 AAATTAATAAAATAT-TATTTTT
1 AAATAAATAAAATATATATAATT
8128546 AACATAAATATAAATATATATAATT
1 AA-ATAAATA-AAATATATATAATT
8128571 AAATAAATAA
1 AAATAAATAA
8128581 CTAAAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 2 0.07
23 7 0.24
24 13 0.45
25 7 0.24
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (23 bp):
AAATAAATAAAATATATATAATT
Found at i:8128723 original size:15 final size:15
Alignment explanation
Indices: 8128703--8128734 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8128693 TTCAAAACTC
*
8128703 AATTTAAAAACAATT
1 AATTTAAAAAAAATT
8128718 AATTTAAAAAAAATT
1 AATTTAAAAAAAATT
8128733 AA
1 AA
8128735 ATTATATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (15 bp):
AATTTAAAAAAAATT
Found at i:8136766 original size:26 final size:27
Alignment explanation
Indices: 8136713--8136766 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
8136703 TAATAATTTA
**
8136713 ATCATAAAACTATAAATTTTAAGGTAT
1 ATCATAAAACTATAAATTTTAAAATAT
8136740 ATCATAAAA-TACT-AATTTTAAAATAT
1 ATCATAAAACTA-TAAATTTTAAAATAT
8136766 A
1 A
8136767 AAATTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.37
Consensus pattern (27 bp):
ATCATAAAACTATAAATTTTAAAATAT
Found at i:8136991 original size:30 final size:33
Alignment explanation
Indices: 8136957--8137036 Score: 94
Period size: 35 Copynumber: 2.5 Consensus size: 33
8136947 AATCTTTATG
*
8136957 TAATAAAAAAGAAATA-TCTA-TATAT-AAAAT
1 TAATAAAAAAGAAATATTATATTATATGAAAAT
*
8136987 TAATAAAAAGGAAATATTTATATTTATATGAAAAT
1 TAATAAAAAAGAAATA-TTATA-TTATATGAAAAT
*
8137022 TAGTAAAAAAGAAAT
1 TAATAAAAAAGAAAT
8137037 TAAAATCATT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
30 15 0.37
32 3 0.07
34 5 0.12
35 18 0.44
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.31
Consensus pattern (33 bp):
TAATAAAAAAGAAATATTATATTATATGAAAAT
Found at i:8142952 original size:29 final size:29
Alignment explanation
Indices: 8142920--8142986 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
8142910 ATCATTTTAT
*
8142920 TTAAATAAATTTTTATATTTTTA-TTACAA
1 TTAAATAAACTTTTA-ATTTTTACTTACAA
* *
8142949 TTAAATAAGCTTTTAATTTTTACTTTACAC
1 TTAAATAAACTTTTAATTTTTAC-TTACAA
8142979 TTAAATAA
1 TTAAATAA
8142987 GCCCTTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 7 0.21
29 13 0.39
30 13 0.39
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.51
Consensus pattern (29 bp):
TTAAATAAACTTTTAATTTTTACTTACAA
Found at i:8142983 original size:30 final size:29
Alignment explanation
Indices: 8142920--8142988 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 29
8142910 ATCATTTTAT
**
8142920 TTAAATAAATTTTTATATTTTTATTACAA
1 TTAAATAAGCTTTTATATTTTTATTACAA
*
8142949 TTAAATAAGCTTTTA-ATTTTTACTTTACAC
1 TTAAATAAGCTTTTATATTTTTA--TTACAA
8142979 TTAAATAAGC
1 TTAAATAAGC
8142989 CCTTAAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
28 7 0.20
29 13 0.37
30 15 0.43
ACGTcount: A:0.39, C:0.09, G:0.03, T:0.49
Consensus pattern (29 bp):
TTAAATAAGCTTTTATATTTTTATTACAA
Found at i:8143000 original size:30 final size:30
Alignment explanation
Indices: 8142943--8143005 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
8142933 TATATTTTTA
** * *
8142943 TTACAATTAAATAAGCTTTTAATTTTTACT
1 TTACAATTAAATAAGCCCTTAAATTTTAAT
*
8142973 TTACACTTAAATAAGCCCTTAAATTTTAAT
1 TTACAATTAAATAAGCCCTTAAATTTTAAT
8143003 TTA
1 TTA
8143006 TATCCAAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.03, T:0.46
Consensus pattern (30 bp):
TTACAATTAAATAAGCCCTTAAATTTTAAT
Found at i:8143112 original size:29 final size:29
Alignment explanation
Indices: 8143074--8143155 Score: 114
Period size: 29 Copynumber: 2.9 Consensus size: 29
8143064 TTTTATTTAA
8143074 AATAAAAATTTATTTGAATATAAATAAAT
1 AATAAAAATTTATTTGAATATAAATAAAT
* *
8143103 AATAATAATTTATTTGAATATAACAAAAAT
1 AATAAAAATTTATTTGAATATAA-ATAAAT
*
8143133 -ATAAAAATTTATTTAAATA-AAAT
1 AATAAAAATTTATTTGAATATAAAT
8143156 GATAAAACTT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 1 0.02
28 2 0.04
29 39 0.83
30 5 0.11
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (29 bp):
AATAAAAATTTATTTGAATATAAATAAAT
Found at i:8144630 original size:11 final size:11
Alignment explanation
Indices: 8144616--8144655 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
8144606 ATATTATTTT
*
8144616 TTTATTTTATA
1 TTTATATTATA
8144627 TTTATATTATA
1 TTTATATTATA
8144638 TTTATATTATA
1 TTTATATTATA
8144649 -TTATATT
1 TTTATATT
8144656 TTAAATTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 7 0.25
11 21 0.75
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTATATTATA
Found at i:8144647 original size:16 final size:17
Alignment explanation
Indices: 8144617--8144656 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
8144607 TATTATTTTT
8144617 TTAT-TTTATATTTATA
1 TTATATTTATATTTATA
8144633 TTATATTTATA-TTATA
1 TTATATTTATATTTATA
8144649 TTATATTT
1 TTATATTT
8144657 TAAATTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTATATTTATATTTATA
Found at i:8145563 original size:21 final size:21
Alignment explanation
Indices: 8145526--8145569 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8145516 GTTTAGATTT
*
8145526 ATTTAGATGAAAATAAAATTA
1 ATTTAGATGAAAATAAAAATA
*
8145547 ATTTTGAT-AAAATTAAAAATA
1 ATTTAGATGAAAA-TAAAAATA
8145568 AT
1 AT
8145570 AATTACTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (21 bp):
ATTTAGATGAAAATAAAAATA
Found at i:8145595 original size:22 final size:22
Alignment explanation
Indices: 8145570--8145623 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
8145560 TAAAAATAAT
8145570 AATTACTT-TAATTATCATTAAA
1 AATTA-TTATAATTATCATTAAA
*
8145592 AATTATTATAATTATGATTAAA
1 AATTATTATAATTATCATTAAA
*
8145614 AATTTTTATA
1 AATTATTATA
8145624 TTAAATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 2 0.07
22 27 0.93
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (22 bp):
AATTATTATAATTATCATTAAA
Found at i:8146883 original size:10 final size:9
Alignment explanation
Indices: 8146866--8146964 Score: 58
Period size: 10 Copynumber: 10.4 Consensus size: 9
8146856 AAATAAATAA
8146866 ATTAATTAT
1 ATTAATTAT
8146875 ATCTAATTAT
1 AT-TAATTAT
*
8146885 ATT-ATTTT
1 ATTAATTAT
8146893 ATATAATTAT
1 AT-TAATTAT
*
8146903 ATTAATCAT
1 ATTAATTAT
*
8146912 GTCGT-ATTAT
1 AT--TAATTAT
*
8146922 ATTATTTAAAT
1 ATTAATT--AT
*
8146933 ATAAATTAAT
1 ATTAATT-AT
* *
8146943 TTTAAATAT
1 ATTAATTAT
8146952 ATTAATTAT
1 ATTAATTAT
8146961 ATTA
1 ATTA
8146965 TATCACGTAT
Statistics
Matches: 68, Mismatches: 14, Indels: 16
0.69 0.14 0.16
Matches are distributed among these distances:
8 7 0.10
9 26 0.38
10 27 0.40
11 8 0.12
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (9 bp):
ATTAATTAT
Found at i:8146955 original size:15 final size:16
Alignment explanation
Indices: 8146926--8146958 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
8146916 TATTATATTA
8146926 TTTAAATATAAATTAAT
1 TTTAAATAT-AATTAAT
8146943 TTTAAATAT-ATTAAT
1 TTTAAATATAATTAAT
8146958 T
1 T
8146959 ATATTATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTAAATATAATTAAT
Found at i:8146982 original size:30 final size:30
Alignment explanation
Indices: 8146948--8147013 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
8146938 TTAATTTTAA
*
8146948 ATATATTAATTATATTATATCACGTATAAT
1 ATATATTAAATATATTATATCACGTATAAT
* * * * *
8146978 ATATAATAAATATATTATGTTATGTATCAT
1 ATATATTAAATATATTATATCACGTATAAT
8147008 ATATAT
1 ATATAT
8147014 ATATATGTCA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.47
Consensus pattern (30 bp):
ATATATTAAATATATTATATCACGTATAAT
Found at i:8147061 original size:17 final size:17
Alignment explanation
Indices: 8147039--8147074 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
8147029 TTCATGTCGT
8147039 ATATAAAATTAT-ATATA
1 ATATAAAA-TATGATATA
8147056 ATATAAAATATGATATA
1 ATATAAAATATGATATA
8147073 AT
1 AT
8147075 GACATGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
ATATAAAATATGATATA
Found at i:8154423 original size:127 final size:127
Alignment explanation
Indices: 8154189--8154444 Score: 361
Period size: 127 Copynumber: 2.0 Consensus size: 127
8154179 GATTTAAGTT
* * * * *
8154189 TAATATTAATTTTGAATTTATATTTTGAGAAATTATTTCATACATTGTCTCAACGAAATTTTTAA
1 TAATATTAATTTTAAATTTATATCTTAAAAAATTATTTCATACATTGTCTCAACAAAATTTTTAA
* *
8154254 CATCATAAACGAGATTAAAATGATGACACATGTCTCATTTTTTTAAATATATAAGAAATATG
66 CATCATAAACGAGATTAAAATGATGACACATATATCATTTTTTTAAATATATAAGAAATATG
* *
8154316 TAATATTAATTTTAAATTTATATCTTAAAAAATTATTTCATATATTGTTTCAACAAAATTTTTTA
1 TAATATTAATTTTAAATTTATATCTTAAAAAATTATTTCATACATTGTCTCAACAAAA-TTTTTA
* * * * * *
8154381 ATATCATAAGCGAGATTAAATTGATGACATATATATTA-TTTTTTAAATATATAAGAGATATG
65 ACATCATAAACGAGATTAAAATGATGACACATATATCATTTTTTTAAATATATAAGAAATATG
8154443 TA
1 TA
8154445 TTATATCTTA
Statistics
Matches: 113, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
127 76 0.67
128 37 0.33
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.43
Consensus pattern (127 bp):
TAATATTAATTTTAAATTTATATCTTAAAAAATTATTTCATACATTGTCTCAACAAAATTTTTAA
CATCATAAACGAGATTAAAATGATGACACATATATCATTTTTTTAAATATATAAGAAATATG
Found at i:8154507 original size:128 final size:126
Alignment explanation
Indices: 8154189--8154482 Score: 306
Period size: 127 Copynumber: 2.3 Consensus size: 126
8154179 GATTTAAGTT
* ** * * * * * *
8154189 TAATATTAATTTTGAATTTATATTTTGAGAAATTATTTCATACATTGTCTCAACGAAATTTTTAA
1 TAATATTAATCTT-AATTTATAACTTAAAAAATAATTTCATATATTGTTTCAACAAAATTTTTAA
* *
8154254 CATCATAAACGAGATTAAAATGATGACACATGTCTCATTTTTTTAAATATATAAGAAATATG
65 CATCATAAACGAGATTAAAATGATGACACATATATCATTTTTTTAAATATATAAGAAATATG
* * *
8154316 TAATATTAATTTTAAATTTATATCTTAAAAAATTATTTCATATATTGTTTCAACAAAATTTTTTA
1 TAATATTAATCTT-AATTTATAACTTAAAAAATAATTTCATATATTGTTTCAACAAAA-TTTTTA
* * * * * *
8154381 ATATCATAAGCGAGATTAAATTGATGACATATATATTA-TTTTTTAAATATATAAGAGATATG
64 ACATCATAAACGAGATTAAAATGATGACACATATATCATTTTTTTAAATATATAAGAAATATG
*
8154443 TATTATATCTTAATCTT-ATTTATGAAGTTAAAAAA-AATTT
1 TA--ATA--TTAATCTTAATTTAT-AACTTAAAAAATAATTT
8154483 ACTATCATTG
Statistics
Matches: 142, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
127 76 0.54
128 37 0.26
129 13 0.09
130 9 0.06
131 7 0.05
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.44
Consensus pattern (126 bp):
TAATATTAATCTTAATTTATAACTTAAAAAATAATTTCATATATTGTTTCAACAAAATTTTTAAC
ATCATAAACGAGATTAAAATGATGACACATATATCATTTTTTTAAATATATAAGAAATATG
Found at i:8154601 original size:18 final size:17
Alignment explanation
Indices: 8154578--8154613 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
8154568 TAATAAAATT
*
8154578 ATATCCTCTTCTTTTTTA
1 ATATCCTCAT-TTTTTTA
8154596 ATATCCTCATTTTTTTA
1 ATATCCTCATTTTTTTA
8154613 A
1 A
8154614 CATTTAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.22, C:0.19, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATCCTCATTTTTTTA
Found at i:8155433 original size:7 final size:7
Alignment explanation
Indices: 8155421--8155445 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8155411 AACTAAAAAA
8155421 TTATATT
1 TTATATT
8155428 TTATATT
1 TTATATT
8155435 TTATATT
1 TTATATT
8155442 TTAT
1 TTAT
8155446 GTCAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTATATT
Found at i:8155505 original size:30 final size:31
Alignment explanation
Indices: 8155437--8155506 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 31
8155427 TTTATATTTT
*
8155437 ATATTTTATGTCAACATAAATTATAATACGTA
1 ATATTTTATGTCAAAATAAATTATAATAC-TA
8155469 AT-TTTTATGT-AAAATATAA-TATAAATA-TA
1 ATATTTTATGTCAAAATA-AATTAT-AATACTA
8155498 ATATTTTAT
1 ATATTTTAT
8155507 ACGATATCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
29 4 0.12
30 14 0.41
31 14 0.41
32 2 0.06
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (31 bp):
ATATTTTATGTCAAAATAAATTATAATACTA
Found at i:8156894 original size:16 final size:18
Alignment explanation
Indices: 8156855--8156897 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
8156845 AATTAAACCT
*
8156855 AATTATATATTTTTATTA
1 AATTTTATATTTTTATTA
*
8156873 ATTTTTATA-TTTT-TTA
1 AATTTTATATTTTTATTA
8156889 AATTTTATA
1 AATTTTATA
8156898 AAATAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 11 0.50
17 4 0.18
18 7 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
AATTTTATATTTTTATTA
Found at i:8170587 original size:13 final size:14
Alignment explanation
Indices: 8170556--8170591 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
8170546 ATTTGGAGAA
8170556 AAAATTATAAATATT
1 AAAATT-TAAATATT
8170571 AAAATTTAAAT-TT
1 AAAATTTAAATATT
8170584 AAAATTTA
1 AAAATTTA
8170592 TTAAATATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.48
14 5 0.24
15 6 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AAAATTTAAATATT
Found at i:8170602 original size:23 final size:24
Alignment explanation
Indices: 8170567--8170611 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
8170557 AAATTATAAA
8170567 TATTAAAATTTAAAT-TTAAAATT
1 TATTAAAATTTAAATCTTAAAATT
*
8170590 TATT-AAATATTAACTCTTAAAA
1 TATTAAAAT-TTAAATCTTAAAA
8170612 ATAATTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 9 0.47
24 6 0.32
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (24 bp):
TATTAAAATTTAAATCTTAAAATT
Found at i:8171173 original size:63 final size:63
Alignment explanation
Indices: 8171058--8171177 Score: 179
Period size: 64 Copynumber: 1.9 Consensus size: 63
8171048 TTTAATGTGT
* * * *
8171058 CATAATTATTTTAAATTTGATTAATTTAAAATTAAGTCAAATTAAATCTCATAAAAAATTTAC
1 CATAATTACTTTAAATTTGATCAATTTAAAATCAAATCAAATTAAATCTCATAAAAAATTTAC
*
8171121 CATAATTACTTTAAATTTTGATCAATTTAAAATCAAATCGAATTAAAT-TCATAAAAA
1 CATAATTACTTTAAA-TTTGATCAATTTAAAATCAAATCAAATTAAATCTCATAAAAA
8171178 TTAAATTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
63 23 0.45
64 28 0.55
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.39
Consensus pattern (63 bp):
CATAATTACTTTAAATTTGATCAATTTAAAATCAAATCAAATTAAATCTCATAAAAAATTTAC
Found at i:8171183 original size:47 final size:47
Alignment explanation
Indices: 8171131--8171229 Score: 135
Period size: 47 Copynumber: 2.1 Consensus size: 47
8171121 CATAATTACT
* * *
8171131 TTAAATTTTGATCAATTTAAAATCAAATCGAATTAAATTCATAAAAA
1 TTAAATTTTAATCAATTTAAAATCAAATCAAATTAAACTCATAAAAA
* * *
8171178 TTAAATTTTAATTAATTTAAAATCAAATCAAATTGAACTCGTAAAAA
1 TTAAATTTTAATCAATTTAAAATCAAATCAAATTAAACTCATAAAAA
*
8171225 ATAAA
1 TTAAA
8171230 CGATTTCAAC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.35
Consensus pattern (47 bp):
TTAAATTTTAATCAATTTAAAATCAAATCAAATTAAACTCATAAAAA
Found at i:8171647 original size:47 final size:47
Alignment explanation
Indices: 8171578--8171672 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
8171568 TACCCAGACA
8171578 CATCATGAAATTCACTAATAACCAGACAATTCCAACAAGATTTGCTG
1 CATCATGAAATTCACTAATAACCAGACAATTCCAACAAGATTTGCTG
*
8171625 CATCATGAAATTCATTAATAACCAGACAATTCCAACAAGATTTGCTG
1 CATCATGAAATTCACTAATAACCAGACAATTCCAACAAGATTTGCTG
8171672 C
1 C
8171673 TACATACATG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (47 bp):
CATCATGAAATTCACTAATAACCAGACAATTCCAACAAGATTTGCTG
Found at i:8173651 original size:22 final size:23
Alignment explanation
Indices: 8173603--8173652 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
8173593 TTCTTATAAA
*
8173603 AATAACATTTTATTTGAAATTAT
1 AATAACATATTATTTGAAATTAT
*
8173626 AATAAGATATTATTTGAAA-TAT
1 AATAACATATTATTTGAAATTAT
8173648 AATAA
1 AATAA
8173653 TTTCAATGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (23 bp):
AATAACATATTATTTGAAATTAT
Found at i:8173983 original size:20 final size:21
Alignment explanation
Indices: 8173938--8173986 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
8173928 TTTTCGTATT
8173938 TTAAAATTACGATATTTTTTA
1 TTAAAATTACGATATTTTTTA
*
8173959 TTAAAATTACGATCTTTTTTA
1 TTAAAATTACGATATTTTTTA
*
8173980 TAAAAAT
1 TTAAAAT
8173987 ATAATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.49
Consensus pattern (21 bp):
TTAAAATTACGATATTTTTTA
Found at i:8174334 original size:17 final size:18
Alignment explanation
Indices: 8174304--8174340 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
8174294 TCGGATTATT
*
8174304 TATTTTTATTAATTTTTA
1 TATTTTTATAAATTTTTA
8174322 TATTTTT-TAAATTTTTA
1 TATTTTTATAAATTTTTA
8174339 TA
1 TA
8174341 AATTAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TATTTTTATAAATTTTTA
Found at i:8176285 original size:23 final size:23
Alignment explanation
Indices: 8176242--8176303 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
8176232 TATTTATTTT
* *
8176242 ATTTATTT-ATATTCATGAATAA
1 ATTTATTTAATATTTATAAATAA
8176264 ATTTATTTAATATTTATAAATAA
1 ATTTATTTAATATTTATAAATAA
* *
8176287 ATTTAATAAATATTTAT
1 ATTTATTTAATATTTAT
8176304 TTATATTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
22 8 0.23
23 27 0.77
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
ATTTATTTAATATTTATAAATAA
Found at i:8187378 original size:41 final size:41
Alignment explanation
Indices: 8187332--8187412 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
8187322 CTTTATTTGG
*
8187332 GAAAACTTCTAACCAATAATGAAGAAAAA-AAAATACTTTAA
1 GAAAACTTCTAACCAAAAAT-AAGAAAAATAAAATACTTTAA
*
8187373 GAAAACTTCTATCCAAAAATAAGAAAAATTAAAATACTTT
1 GAAAACTTCTAACCAAAAATAAGAAAAA-TAAAATACTTT
8187413 TTTGAGGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
40 8 0.22
41 18 0.50
42 10 0.28
ACGTcount: A:0.57, C:0.12, G:0.06, T:0.25
Consensus pattern (41 bp):
GAAAACTTCTAACCAAAAATAAGAAAAATAAAATACTTTAA
Found at i:8187744 original size:2 final size:2
Alignment explanation
Indices: 8187737--8187763 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8187727 CAAAATTACA
8187737 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8187764 AAAGCACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8188462 original size:17 final size:18
Alignment explanation
Indices: 8188442--8188475 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8188432 AATTTTAATA
8188442 AAATTTATTTAA-CATAT
1 AAATTTATTTAATCATAT
*
8188459 AAATTTTTTTAATCATA
1 AAATTTATTTAATCATA
8188476 ATTATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (18 bp):
AAATTTATTTAATCATAT
Found at i:8188500 original size:12 final size:12
Alignment explanation
Indices: 8188485--8188511 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8188475 AATTATAATA
8188485 ATTTTTAATTTT
1 ATTTTTAATTTT
8188497 ATTTTTAATTTT
1 ATTTTTAATTTT
8188509 ATT
1 ATT
8188512 CTCCATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
ATTTTTAATTTT
Found at i:8190193 original size:2 final size:2
Alignment explanation
Indices: 8190186--8190220 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8190176 TGAGATAGAC
8190186 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8190221 CAGGCAGAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8193060 original size:153 final size:153
Alignment explanation
Indices: 8192802--8193103 Score: 491
Period size: 153 Copynumber: 2.0 Consensus size: 153
8192792 ACAGACGATC
8192802 AATAATCCAATTGAGAGATGACAAGTCAACATTCTCATATAATATCAACTAATCAACTAAAATGA
1 AATAATCCAATTGAGAGATGACAAGTCAACATTCTCATATAATATCAACTAATCAACTAAAATGA
* * ** *
8192867 TTGAGTTAAGGTGAAATTTCAAGCTTTTGATTGATCGAGTGAAATTGATAAAATTATTTAATTTA
66 TTGAGTTAAGGTGAAATCTCAAGCTTTTAATTGATCGAGTGAAATTGATAAAATTATGCAATTGA
8192932 AAAATGACAAGTCAACATTATCA
131 AAAATGACAAGTCAACATTATCA
* * *
8192955 AATAATTCAATTGAGAGATGACAAGTCAACATTCTCATATGATATCAA-TCAATCAACTAAAGTG
1 AATAATCCAATTGAGAGATGACAAGTCAACATTCTCATATAATATCAACT-AATCAACTAAAATG
*
8193019 ATTGAGTTAAGGTGAAATCTCAAG-TTTCTAATTGATTGAGTGAAATTGATAAAATTATGCAATT
65 ATTGAGTTAAGGTGAAATCTCAAGCTTT-TAATTGATCGAGTGAAATTGATAAAATTATGCAATT
8193083 GAAAAATGACAAGTCAACATT
129 GAAAAATGACAAGTCAACATT
8193104 CTCATATGAT
Statistics
Matches: 138, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
152 4 0.03
153 134 0.97
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (153 bp):
AATAATCCAATTGAGAGATGACAAGTCAACATTCTCATATAATATCAACTAATCAACTAAAATGA
TTGAGTTAAGGTGAAATCTCAAGCTTTTAATTGATCGAGTGAAATTGATAAAATTATGCAATTGA
AAAATGACAAGTCAACATTATCA
Found at i:8203441 original size:38 final size:37
Alignment explanation
Indices: 8203382--8203454 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
8203372 TTTTAAGAGT
*
8203382 TTAATATTAGAAGAAATCCAAAAATAAACCAATAACAAA
1 TTAATATTAGAAGAAAGCCAAAAATAAA--AATAACAAA
*
8203421 TTAA-ATTAGAAGCAAGCCAAAAATAAAAATAACA
1 TTAATATTAGAAGAAAGCCAAAAATAAAAATAACA
8203455 GTACCAAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 7 0.22
38 21 0.66
39 4 0.12
ACGTcount: A:0.62, C:0.12, G:0.07, T:0.19
Consensus pattern (37 bp):
TTAATATTAGAAGAAAGCCAAAAATAAAAATAACAAA
Found at i:8205542 original size:24 final size:24
Alignment explanation
Indices: 8205497--8205542 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
8205487 TATACATGAG
*
8205497 TTTTTATTTATATATATTTAAAAT
1 TTTTTATTTATATATATATAAAAT
*
8205521 TTTTTAATTTTTAT-TATATAAA
1 TTTTT-ATTTATATATATATAAA
8205543 TTAAATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTTTATTTATATATATATAAAAT
Found at i:8209958 original size:28 final size:28
Alignment explanation
Indices: 8209919--8209987 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
8209909 TTAAATTATA
*
8209919 ATAAAATATTTAATATAGTATTTAAATT
1 ATAAAATTTTTAATATAGTATTTAAATT
* * *
8209947 TTAAAATTTTTAATGTATTATTTAAATT
1 ATAAAATTTTTAATATAGTATTTAAATT
8209975 AT-AAATTTGTTAA
1 ATAAAATTT-TTAA
8209988 ATAATATGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 6 0.17
28 29 0.83
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (28 bp):
ATAAAATTTTTAATATAGTATTTAAATT
Found at i:8210514 original size:22 final size:21
Alignment explanation
Indices: 8210470--8210516 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
8210460 CTTTGATCTT
*
8210470 TCATAAAATATACAATTTATA
1 TCATAAAATATAAAATTTATA
* *
8210491 TCATAAAATTTTAAAATTTGTA
1 TCATAAAA-TATAAAATTTATA
8210513 TCAT
1 TCAT
8210517 TTTTATCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.43
Consensus pattern (21 bp):
TCATAAAATATAAAATTTATA
Found at i:8212502 original size:19 final size:20
Alignment explanation
Indices: 8212478--8212515 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
8212468 ATTAAAAATA
8212478 AAAAAAACTTT-AATTTTAT
1 AAAAAAACTTTAAATTTTAT
*
8212497 AAAAAAATTTTAAATTTTA
1 AAAAAAACTTTAAATTTTA
8212516 ATAGTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
AAAAAAACTTTAAATTTTAT
Found at i:8213093 original size:26 final size:23
Alignment explanation
Indices: 8213049--8213095 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 23
8213039 ATTTTTTATA
*
8213049 AAAAAATATTGTAATTTAAAAAT
1 AAAAAATATTATAATTTAAAAAT
8213072 AAAAAATAATTATATATATTAAAA
1 AAAAAAT-ATTATA-AT-TTAAAA
8213096 TTTAAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 5 0.25
25 2 0.10
26 6 0.30
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (23 bp):
AAAAAATATTATAATTTAAAAAT
Found at i:8214811 original size:2 final size:2
Alignment explanation
Indices: 8214804--8214839 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8214794 TCAATTTGGA
8214804 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8214840 CAGTTTTGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8218890 original size:117 final size:115
Alignment explanation
Indices: 8218760--8218983 Score: 313
Period size: 117 Copynumber: 1.9 Consensus size: 115
8218750 TGGTGAATTA
* * * *
8218760 ATTTATAATTATGTTTTTTTCACTATTTTCCACGGGAAGATAGTGTATTTATTGGGAGTGTGAAA
1 ATTTATAACTATGTTTTTTTCACTATTTTCCACGGAAAGATAGTGCATTTATTGGGAGGGTGAAA
*
8218825 CACACCGTAACACTATACAATGAATCGAAAATAATGCAAGCTATTATAACAC
66 CACACCGCAACACTAT--AATGAATCGAAAATAATGCAAGCTATTATAACAC
* * * *
8218877 ATTTATAACTATGTTTTTTTCACTATTTTCTACGGAAAGATGGTGCGTTTATTGGGAGGGTGGAA
1 ATTTATAACTATGTTTTTTTCACTATTTTCCACGGAAAGATAGTGCATTTATTGGGAGGGTGAAA
** * *
8218942 TGCACCGCAACACTGTAATGAATGGAAAATAATGCAAGCTAT
66 CACACCGCAACACTATAATGAATCGAAAATAATGCAAGCTAT
8218984 AATTGATTGA
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
115 25 0.27
117 69 0.73
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (115 bp):
ATTTATAACTATGTTTTTTTCACTATTTTCCACGGAAAGATAGTGCATTTATTGGGAGGGTGAAA
CACACCGCAACACTATAATGAATCGAAAATAATGCAAGCTATTATAACAC
Found at i:8221788 original size:11 final size:11
Alignment explanation
Indices: 8221755--8221797 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
8221745 TGATAAATTA
8221755 AAATATAATAT
1 AAATATAATAT
*
8221766 AATAATACAATAT
1 -A-AATATAATAT
8221779 AAATATAATAT
1 AAATATAATAT
*
8221790 GAATATAA
1 AAATATAA
8221798 GATGTGAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 16 0.59
12 2 0.07
13 9 0.33
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (11 bp):
AAATATAATAT
Found at i:8221923 original size:12 final size:13
Alignment explanation
Indices: 8221886--8221931 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
8221876 TTTAATGTCG
8221886 ATATATGATATATA
1 ATATATGATATA-A
* *
8221900 AT-TTTTATATAA
1 ATATATGATATAA
8221912 A-ATATGATATAA
1 ATATATGATATAA
8221924 ATATATGA
1 ATATATGA
8221932 ATTTTAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
12 11 0.42
13 13 0.50
14 2 0.08
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (13 bp):
ATATATGATATAA
Found at i:8224947 original size:10 final size:10
Alignment explanation
Indices: 8224906--8224949 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
8224896 ATTTTATTTT
8224906 TTATTATTAA
1 TTATTATTAA
*
8224916 TTATTAATAATAT
1 TTATT-AT--TAA
8224929 TTATTATTAA
1 TTATTATTAA
8224939 TTATTATTAA
1 TTATTATTAA
8224949 T
1 T
8224950 ATTTTCTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
10 18 0.62
11 2 0.07
12 2 0.07
13 7 0.24
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TTATTATTAA
Found at i:8224959 original size:23 final size:23
Alignment explanation
Indices: 8224905--8224953 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
8224895 TATTTTATTT
8224905 TTTATTATTAATTATTAATAATA
1 TTTATTATTAATTATTAATAATA
*
8224928 TTTATTATTAATTATTATTAATA
1 TTTATTATTAATTATTAATAATA
8224951 TTT
1 TTT
8224954 TCTATTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTATTATTAATTATTAATAATA
Found at i:8225559 original size:52 final size:52
Alignment explanation
Indices: 8225431--8225559 Score: 186
Period size: 52 Copynumber: 2.5 Consensus size: 52
8225421 CATAAGGTGT
* *
8225431 TCTTAGAATTCTTCTCCTGTAAGTCAAACTTACTTATTAAGAATCCATTTTC
1 TCTTAGAATTCTTTTCTTGTAAGTCAAACTTACTTATTAAGAATCCATTTTC
* ** * *
8225483 TTTTAGAATTCTTTTCTTACAAGTCAAACTTACTTATTAAGAATTCTTTTTC
1 TCTTAGAATTCTTTTCTTGTAAGTCAAACTTACTTATTAAGAATCCATTTTC
*
8225535 TCTTAGAATTCTTTTTTTGTAAGTC
1 TCTTAGAATTCTTTTCTTGTAAGTC
8225560 TTCTTGTCCA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.27, C:0.17, G:0.08, T:0.48
Consensus pattern (52 bp):
TCTTAGAATTCTTTTCTTGTAAGTCAAACTTACTTATTAAGAATCCATTTTC
Found at i:8225602 original size:11 final size:11
Alignment explanation
Indices: 8225586--8225625 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
8225576 AATATCTGAT
8225586 AAATCTCAAAC
1 AAATCTCAAAC
8225597 AAATCTCAAAC
1 AAATCTCAAAC
*
8225608 AAATCTTAAAC
1 AAATCTCAAAC
8225619 AAATCTC
1 AAATCTC
8225626 TTATAGGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.23
Consensus pattern (11 bp):
AAATCTCAAAC
Found at i:8228112 original size:2 final size:2
Alignment explanation
Indices: 8228105--8228135 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8228095 TTAAGCACAT
8228105 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8228136 CTTCTGTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8233056 original size:3 final size:3
Alignment explanation
Indices: 8233048--8233079 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8233038 ACTTATCACA
8233048 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8233080 AGTGAAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8233772 original size:11 final size:11
Alignment explanation
Indices: 8233756--8233782 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8233746 GATCTAATCT
8233756 GATTACTTTTG
1 GATTACTTTTG
8233767 GATTACTTTTG
1 GATTACTTTTG
8233778 GATTA
1 GATTA
8233783 GATGCTTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
GATTACTTTTG
Found at i:8238627 original size:17 final size:18
Alignment explanation
Indices: 8238585--8238630 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
8238575 CATTAAAAAG
*
8238585 AAATAAAAAATTATATTT
1 AAATTAAAAATTATATTT
*
8238603 -TATATAAAAATT-TATTT
1 AAAT-TAAAAATTATATTT
8238620 AAATTAAAAAT
1 AAATTAAAAAT
8238631 AAAAGTTGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATTAAAAATTATATTT
Found at i:8239213 original size:12 final size:12
Alignment explanation
Indices: 8239196--8239220 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8239186 GATTTATAAG
8239196 ATAGAGTTTGTA
1 ATAGAGTTTGTA
8239208 ATAGAGTTTGTA
1 ATAGAGTTTGTA
8239220 A
1 A
8239221 GATCGGCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (12 bp):
ATAGAGTTTGTA
Found at i:8240475 original size:21 final size:22
Alignment explanation
Indices: 8240451--8240495 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
8240441 AGTTAACACT
8240451 TTCCATAATC-AAATTCAGTCC
1 TTCCATAATCAAAATTCAGTCC
8240472 TTCCATAATCAAAATTCAGTCC
1 TTCCATAATCAAAATTCAGTCC
8240494 TT
1 TT
8240496 TGCCACTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.36
Consensus pattern (22 bp):
TTCCATAATCAAAATTCAGTCC
Found at i:8245262 original size:22 final size:23
Alignment explanation
Indices: 8245217--8245260 Score: 74
Period size: 21 Copynumber: 2.0 Consensus size: 23
8245207 TTAAAAAATA
8245217 AATTTCAATATTAACATTTTTTT
1 AATTTCAATATTAACATTTTTTT
8245240 AATTTCAA-ATT-ACATTTTTTT
1 AATTTCAATATTAACATTTTTTT
8245261 TATATGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 10 0.48
22 3 0.14
23 8 0.38
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (23 bp):
AATTTCAATATTAACATTTTTTT
Found at i:8246857 original size:16 final size:16
Alignment explanation
Indices: 8246833--8246866 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8246823 TGGAATTGAC
*
8246833 ATTTTAAAAATTATAA
1 ATTTAAAAAATTATAA
*
8246849 ATTTAAAAAATTTTAA
1 ATTTAAAAAATTATAA
8246865 AT
1 AT
8246867 ATGTAATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTTAAAAAATTATAA
Found at i:8247131 original size:16 final size:17
Alignment explanation
Indices: 8247110--8247145 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
8247100 GGATAAATTT
8247110 AAAAAAAAAAAG-AAGA
1 AAAAAAAAAAAGAAAGA
*
8247126 AAAAAAAAGAAGAAAGA
1 AAAAAAAAAAAGAAAGA
8247143 AAA
1 AAA
8247146 GGAAGACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAGAAAGA
Found at i:8247151 original size:16 final size:13
Alignment explanation
Indices: 8247112--8247151 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
8247102 ATAAATTTAA
8247112 AAAAAAAAAGAAG
1 AAAAAAAAAGAAG
8247125 AAAAAAAAAGAAG
1 AAAAAAAAAGAAG
* *
8247138 AAAGAAAAGGAAG
1 AAAAAAAAAGAAG
8247151 A
1 A
8247152 CATGGATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAGAAG
Found at i:8249789 original size:18 final size:19
Alignment explanation
Indices: 8249766--8249806 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
8249756 ATAAATTATG
* *
8249766 AAATATAATTTTTATATA-
1 AAATATAATATTAATATAT
8249784 AAATATAATATTAATATAT
1 AAATATAATATTAATATAT
8249803 AAAT
1 AAAT
8249807 TATCAACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AAATATAATATTAATATAT
Found at i:8249821 original size:20 final size:19
Alignment explanation
Indices: 8249766--8249823 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 19
8249756 ATAAATTATG
*
8249766 AAATATAA-TTTTTATATA
1 AAATATAACATTTTATATA
* *
8249784 AAATATAATATTAATATATA
1 AAATATAACATT-TTATATA
*
8249804 AATTATCAACATTTTATATA
1 AAATAT-AACATTTTATATA
8249824 CACTTATACA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
18 8 0.25
19 2 0.06
20 17 0.53
21 5 0.16
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
AAATATAACATTTTATATA
Found at i:8255571 original size:2 final size:2
Alignment explanation
Indices: 8255564--8255600 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
8255554 GTATACATAC
*
8255564 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8255601 CAAAAGAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:8263560 original size:21 final size:22
Alignment explanation
Indices: 8263534--8263578 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
8263524 AGACTTTATG
8263534 ATTTAATCATTATTAAGAT-TA
1 ATTTAATCATTATTAAGATATA
*
8263555 ATTTAATCATTTTTAAGATATA
1 ATTTAATCATTATTAAGATATA
8263577 AT
1 AT
8263579 ATTTAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (22 bp):
ATTTAATCATTATTAAGATATA
Found at i:8269335 original size:24 final size:23
Alignment explanation
Indices: 8269308--8269381 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 23
8269298 TTTTATGTCC
8269308 AAAAATTATGTTTTTTTAATATTT
1 AAAAATTAT-TTTTTTTAATATTT
* *
8269332 AAAACTT-TTACATTTTT-ATATTT
1 AAAAATTATT--TTTTTTAATATTT
*
8269355 TAAAATTA-TTTTTTTAATA-TT
1 AAAAATTATTTTTTTTAATATTT
8269376 AAAAAT
1 AAAAAT
8269382 CATAAAACTT
Statistics
Matches: 40, Mismatches: 6, Indels: 11
0.70 0.11 0.19
Matches are distributed among these distances:
21 12 0.30
22 4 0.10
23 13 0.32
24 11 0.28
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (23 bp):
AAAAATTATTTTTTTTAATATTT
Found at i:8271978 original size:31 final size:31
Alignment explanation
Indices: 8271943--8272006 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
8271933 ATCAGGCTTA
*
8271943 ATTAAAGTTGACTTAA-GATTTTGAAAAAATG
1 ATTAAAGTTGACATAAGGATTTT-AAAAAATG
*
8271974 ATTAAAGTTGACATAAGGCTTTTAAAAAATG
1 ATTAAAGTTGACATAAGGATTTTAAAAAATG
8272005 AT
1 AT
8272007 CAAGAATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 25 0.83
32 5 0.17
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (31 bp):
ATTAAAGTTGACATAAGGATTTTAAAAAATG
Found at i:8272236 original size:27 final size:28
Alignment explanation
Indices: 8272191--8272245 Score: 103
Period size: 27 Copynumber: 2.0 Consensus size: 28
8272181 GAGATTGGCC
8272191 AAATCAAAGGGTTAATGTCAAATTTTCT
1 AAATCAAAGGGTTAATGTCAAATTTTCT
8272219 AAATCAAA-GGTTAATGTCAAATTTTCT
1 AAATCAAAGGGTTAATGTCAAATTTTCT
8272246 CTAGTATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 19 0.70
28 8 0.30
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (28 bp):
AAATCAAAGGGTTAATGTCAAATTTTCT
Found at i:8272994 original size:17 final size:17
Alignment explanation
Indices: 8272969--8273011 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8272959 TTAAACTAAG
* *
8272969 CATCATTAATTAATTAA
1 CATCGTTAACTAATTAA
*
8272986 CATCGTTAACTAATTGA
1 CATCGTTAACTAATTAA
*
8273003 CATTGTTAA
1 CATCGTTAA
8273012 AAGACATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.40
Consensus pattern (17 bp):
CATCGTTAACTAATTAA
Found at i:8273349 original size:19 final size:21
Alignment explanation
Indices: 8273309--8273351 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
8273299 TCACATACTT
8273309 TTTTTATTATAAATTCATATA
1 TTTTTATTATAAATTCATATA
8273330 TTTTTATTATAAATAT-ATATA
1 TTTTTATTATAAAT-TCATATA
8273351 T
1 T
8273352 ATATGTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTTTATTATAAATTCATATA
Found at i:8274804 original size:2 final size:2
Alignment explanation
Indices: 8274799--8274825 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8274789 AAAACCATCA
8274799 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8274826 ATTGGTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8277379 original size:17 final size:17
Alignment explanation
Indices: 8277357--8277390 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8277347 TCCTATCACA
*
8277357 TAATATAATTTAAACGC
1 TAATATAATCTAAACGC
8277374 TAATATAATCTAAACGC
1 TAATATAATCTAAACGC
8277391 GCGATACCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (17 bp):
TAATATAATCTAAACGC
Found at i:8283938 original size:58 final size:58
Alignment explanation
Indices: 8283848--8283963 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
8283838 AATCAACTTG
* *
8283848 ATGAACAGTCATATCCACAAGAACGCACAAATAACCCCTGCTGTGACCACTTAACATC
1 ATGAACAGTAATATCCACAAGAAAGCACAAATAACCCCTGCTGTGACCACTTAACATC
*
8283906 ATGAACAGTAATATCCACAAGAAAGCACAAATAGCCCCTGCTGTGACCACTTAACATC
1 ATGAACAGTAATATCCACAAGAAAGCACAAATAACCCCTGCTGTGACCACTTAACATC
8283964 TTTCGCAGCT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.39, C:0.29, G:0.13, T:0.19
Consensus pattern (58 bp):
ATGAACAGTAATATCCACAAGAAAGCACAAATAACCCCTGCTGTGACCACTTAACATC
Found at i:8285814 original size:15 final size:15
Alignment explanation
Indices: 8285796--8285826 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8285786 AATCCAATTA
8285796 AATTATATATATTTT
1 AATTATATATATTTT
*
8285811 AATTATATATTTTTT
1 AATTATATATATTTT
8285826 A
1 A
8285827 GATATTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
AATTATATATATTTT
Found at i:8285891 original size:31 final size:30
Alignment explanation
Indices: 8285830--8285892 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 30
8285820 TTTTTTAGAT
**
8285830 ATTTATAAAAAATAATACTTTTATACTAAA
1 ATTTATAAAAAATAATAAATTTATACTAAA
* *
8285860 ATTTATAAAAATATATTAAATTTATATTAAA
1 ATTTATAAAAA-ATAATAAATTTATACTAAA
8285891 AT
1 AT
8285893 AATATATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 11 0.39
31 17 0.61
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (30 bp):
ATTTATAAAAAATAATAAATTTATACTAAA
Found at i:8285978 original size:17 final size:15
Alignment explanation
Indices: 8285940--8285996 Score: 51
Period size: 17 Copynumber: 3.6 Consensus size: 15
8285930 AGAGTCAATA
* *
8285940 AAATTTAATTTAATT
1 AAATTTAAATAAATT
*
8285955 TAATTTAAATCAAATAT
1 AAATTTAAAT-AAAT-T
8285972 AAATTTAATATAAATT
1 AAATTTAA-ATAAATT
*
8285988 AAAATTAAA
1 AAATTTAAA
8285997 ATTTAAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
15 9 0.26
16 11 0.32
17 12 0.35
18 2 0.06
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
AAATTTAAATAAATT
Found at i:8285981 original size:11 final size:11
Alignment explanation
Indices: 8285936--8285987 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
8285926 GAATAGAGTC
8285936 AATA-AAATTT
1 AATATAAATTT
*
8285946 AAT-TTAATTT
1 AATATAAATTT
* **
8285956 AATTTAAATCA
1 AATATAAATTT
8285967 AATATAAATTT
1 AATATAAATTT
8285978 AATATAAATT
1 AATATAAATT
8285988 AAAATTAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 11 0.33
11 22 0.67
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (11 bp):
AATATAAATTT
Found at i:8291455 original size:83 final size:83
Alignment explanation
Indices: 8291310--8291475 Score: 215
Period size: 83 Copynumber: 2.0 Consensus size: 83
8291300 GTGGCGGTCA
* * * * * * *
8291310 GGCTGATCTGGGATGCCGAAAGGGTGAATGCTCGGGTCCCGGAGCCACGCGAGTTTGAAGCTTAA
1 GGCTGATCCGAGATACCGAAAGGATGAATGCCCGGGTCCCAGAGCCACGCGAGTTCGAAGCTTAA
*
8291375 GTCTCGACCCGTGACAAG
66 GTCTCAACCCGTGACAAG
* * * *
8291393 GGCTGATCCGAGATACCGGAAGGATGAATGCCCGGGTCTCAGAGCCACGCGGGTTCGGAGCTTAA
1 GGCTGATCCGAGATACCGAAAGGATGAATGCCCGGGTCCCAGAGCCACGCGAGTTCGAAGCTTAA
*
8291458 GTCTCAATCCGTGACAAG
66 GTCTCAACCCGTGACAAG
8291476 TGGTATCAGA
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
83 70 1.00
ACGTcount: A:0.23, C:0.25, G:0.34, T:0.19
Consensus pattern (83 bp):
GGCTGATCCGAGATACCGAAAGGATGAATGCCCGGGTCCCAGAGCCACGCGAGTTCGAAGCTTAA
GTCTCAACCCGTGACAAG
Found at i:8301999 original size:21 final size:21
Alignment explanation
Indices: 8301969--8302015 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
8301959 TAGATATTAA
8301969 ATTT-TGAAA-TATAAAATTTT
1 ATTTGTGAAATTA-AAAATTTT
8301989 ATTTGTGAAATTAAAAATTTT
1 ATTTGTGAAATTAAAAATTTT
*
8302010 AATTGT
1 ATTTGT
8302016 TAATATATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 18 0.75
22 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (21 bp):
ATTTGTGAAATTAAAAATTTT
Found at i:8302600 original size:2 final size:2
Alignment explanation
Indices: 8302593--8302622 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8302583 CTTTCATGAA
8302593 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8302623 GCACTTCCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8309005 original size:6 final size:6
Alignment explanation
Indices: 8308996--8309020 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8308986 TTTTAGATTT
8308996 AAATTA AAATTA AAATTA AAATTA A
1 AAATTA AAATTA AAATTA AAATTA A
8309021 TTTGAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATTA
Found at i:8309056 original size:34 final size:35
Alignment explanation
Indices: 8309018--8309084 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
8309008 AAATTAAAAT
* *
8309018 TAATTTGAATTAAAAAT-AATATTTTTAATTTTAA
1 TAATTTGAATTAAAAATAAAAAATTTTAATTTTAA
* *
8309052 TAATTTTAATTGAAAATAAAAAATTTTAATTTT
1 TAATTTGAATTAAAAATAAAAAATTTTAATTTT
8309085 GTAAAAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 15 0.54
35 13 0.46
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (35 bp):
TAATTTGAATTAAAAATAAAAAATTTTAATTTTAA
Found at i:8310822 original size:16 final size:16
Alignment explanation
Indices: 8310797--8310828 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8310787 GATGCCCACC
8310797 ATTTTGTTTTTCTTTT
1 ATTTTGTTTTTCTTTT
*
8310813 ATTTTTTTTTTCTTTT
1 ATTTTGTTTTTCTTTT
8310829 CTGCTGCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.06, G:0.03, T:0.84
Consensus pattern (16 bp):
ATTTTGTTTTTCTTTT
Found at i:8321375 original size:24 final size:23
Alignment explanation
Indices: 8321348--8321401 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
8321338 AAAAAAAATA
*
8321348 AAATTTGA-TCAAATTTTAAATATT
1 AAATTTAAGTCAAA-TTTAAAT-TT
*
8321372 AAATTTAAGTTAAATTTAAATTT
1 AAATTTAAGTCAAATTTAAATTT
8321395 AAATTTA
1 AAATTTA
8321402 TTATTACATC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 9 0.33
24 14 0.52
25 4 0.15
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (23 bp):
AAATTTAAGTCAAATTTAAATTT
Found at i:8321390 original size:6 final size:6
Alignment explanation
Indices: 8321362--8321401 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
8321352 TTGATCAAAT
*
8321362 TTTAAA TATTAAA TTT-AA GTTAAA TTTAAA TTTAAA TTTA
1 TTTAAA T-TTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA
8321402 TTATTACATC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 4 0.13
6 20 0.67
7 6 0.20
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:8321392 original size:17 final size:18
Alignment explanation
Indices: 8321363--8321396 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
8321353 TGATCAAATT
8321363 TTAAATATTAAATTTAAG
1 TTAAATATTAAATTTAAG
8321381 TTAAAT-TTAAATTTAA
1 TTAAATATTAAATTTAA
8321397 ATTTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
TTAAATATTAAATTTAAG
Found at i:8325417 original size:20 final size:20
Alignment explanation
Indices: 8325392--8325438 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
8325382 TTATTATGGA
8325392 ATTAAAATAAGTAAAAATTT
1 ATTAAAATAAGTAAAAATTT
*
8325412 ATTAAAATGAGTAAAAATTT
1 ATTAAAATAAGTAAAAATTT
8325432 ATTAAAA
1 ATTAAAA
8325439 ATAATATAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (20 bp):
ATTAAAATAAGTAAAAATTT
Found at i:8325638 original size:49 final size:49
Alignment explanation
Indices: 8325566--8325664 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
8325556 CATCTTGCTT
8325566 ACTTTAACCCATAGAATCTCGACATCCCATAGTTTGTATTGACAAAGGA
1 ACTTTAACCCATAGAATCTCGACATCCCATAGTTTGTATTGACAAAGGA
8325615 ACTTTAACCCATAGAATCTCGACATCCCATAGTTTGTATTGACAAAGGA
1 ACTTTAACCCATAGAATCTCGACATCCCATAGTTTGTATTGACAAAGGA
8325664 A
1 A
8325665 AGCAATAATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.28
Consensus pattern (49 bp):
ACTTTAACCCATAGAATCTCGACATCCCATAGTTTGTATTGACAAAGGA
Found at i:8326165 original size:26 final size:26
Alignment explanation
Indices: 8326128--8326187 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
8326118 GATAAAAAGA
*
8326128 TAAAAAA--ATATAAATTA-AAATTT
1 TAAAAAATTATATAAATTAGAAAATT
8326151 GTAAAAAATTATATAAATTATGAAAATT
1 -TAAAAAATTATATAAATTA-GAAAATT
8326179 TAAAAAATT
1 TAAAAAATT
8326188 TTAAATAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 7 0.23
26 10 0.32
27 9 0.29
28 5 0.16
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (26 bp):
TAAAAAATTATATAAATTAGAAAATT
Found at i:8333510 original size:20 final size:20
Alignment explanation
Indices: 8333485--8333558 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 20
8333475 TTCAAAATTA
*
8333485 ATAAAATAT-GTTTTTTAAAT
1 ATAAAATATAATTTTTT-AAT
*
8333505 ATAAAATTTAATTTTTTAAT
1 ATAAAATATAATTTTTTAAT
* **
8333525 ATAAATATAAAATTTAATATAT
1 ATAAA-ATATAATTTTTTA-AT
8333547 ATAAATATATAA
1 ATAAA-ATATAA
8333559 ATATAAAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 16 0.36
21 15 0.34
22 13 0.30
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (20 bp):
ATAAAATATAATTTTTTAAT
Found at i:8333542 original size:18 final size:18
Alignment explanation
Indices: 8333519--8333568 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
8333509 AATTTAATTT
8333519 TTTAATATAAATATAAAA
1 TTTAATATAAATATAAAA
8333537 TTTAATAT--ATAT-AAA
1 TTTAATATAAATATAAAA
8333552 --T-ATATAAATATAAAA
1 TTTAATATAAATATAAAA
8333567 TT
1 TT
8333569 AATTAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 11
0.71 0.00 0.29
Matches are distributed among these distances:
12 4 0.15
13 1 0.04
14 4 0.15
15 6 0.22
16 4 0.15
18 8 0.30
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTAATATAAATATAAAA
Found at i:8334451 original size:25 final size:25
Alignment explanation
Indices: 8334423--8334488 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
8334413 TAATTAAAAG
8334423 TAATATAAAAAATTTATTATAATTA
1 TAATATAAAAAATTTATTATAATTA
8334448 TAAT-TAAAAAATATTATTATAATTA
1 TAATATAAAAAAT-TTATTATAATTA
* *
8334473 CAATGAAAAAAAATTT
1 TAAT-ATAAAAAATTT
8334489 TAATAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
24 8 0.22
25 19 0.53
26 2 0.06
27 7 0.19
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (25 bp):
TAATATAAAAAATTTATTATAATTA
Found at i:8334560 original size:50 final size:51
Alignment explanation
Indices: 8334506--8334603 Score: 144
Period size: 50 Copynumber: 1.9 Consensus size: 51
8334496 AAATTTATGT
** *
8334506 TTAATAAATTTTATTGGAATTGATAAAAATTAATATTTAAAT-TTAATTAA
1 TTAATAAATTTTATTAAAATTAATAAAAATTAATATTTAAATATTAATTAA
* *
8334556 TTAATAAATTTTATTAAAATTAATATAAATTGATATTTAAATATTAAT
1 TTAATAAATTTTATTAAAATTAATAAAAATTAATATTTAAATATTAAT
8334604 ATTTAAATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 37 0.88
51 5 0.12
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (51 bp):
TTAATAAATTTTATTAAAATTAATAAAAATTAATATTTAAATATTAATTAA
Found at i:8334597 original size:22 final size:23
Alignment explanation
Indices: 8334533--8334604 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 23
8334523 AATTGATAAA
* *
8334533 AATTAAT-ATTTAAATTT-AATT
1 AATTAATAAATTATATTTAAATT
* *
8334554 AATTAATAAATTTTATTAAAATT
1 AATTAATAAATTATATTTAAATT
8334577 AA-T-ATAAATTGATATTTAAA-T
1 AATTAATAAATT-ATATTTAAATT
8334598 -ATTAATA
1 AATTAATA
8334605 TTTAAATTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
20 1 0.03
21 16 0.40
22 17 0.43
23 6 0.15
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (23 bp):
AATTAATAAATTATATTTAAATT
Found at i:8334607 original size:14 final size:13
Alignment explanation
Indices: 8334535--8334616 Score: 59
Period size: 14 Copynumber: 6.4 Consensus size: 13
8334525 TTGATAAAAA
8334535 TTAATATTTAAAT
1 TTAATATTTAAAT
8334548 TTAATTAATTAATAAAT
1 TTAA-T-ATT--TAAAT
*
8334565 TT--TA-TTAAAA
1 TTAATATTTAAAT
8334575 TTAATA--TAAA-
1 TTAATATTTAAAT
*
8334585 TTGATATTTAAAT
1 TTAATATTTAAAT
8334598 ATTAATATTTAAAT
1 -TTAATATTTAAAT
8334612 TTAAT
1 TTAAT
8334617 TAACGATACA
Statistics
Matches: 56, Mismatches: 3, Indels: 20
0.71 0.04 0.25
Matches are distributed among these distances:
10 11 0.20
11 4 0.07
12 7 0.12
13 10 0.18
14 14 0.25
15 3 0.05
17 7 0.12
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (13 bp):
TTAATATTTAAAT
Found at i:8343274 original size:13 final size:13
Alignment explanation
Indices: 8343256--8343280 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8343246 CCTTATTATA
8343256 TATATTTTCTATG
1 TATATTTTCTATG
8343269 TATATTTTCTAT
1 TATATTTTCTAT
8343281 TGCGCCAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.04, T:0.64
Consensus pattern (13 bp):
TATATTTTCTATG
Found at i:8352105 original size:16 final size:16
Alignment explanation
Indices: 8352080--8352119 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
8352070 TGATAAACCA
*
8352080 ATGATAATGATGATTT
1 ATGATGATGATGATTT
8352096 ATGATGATGATGATTT
1 ATGATGATGATGATTT
*
8352112 ACGATGAT
1 ATGATGAT
8352120 TTTAATGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.40
Consensus pattern (16 bp):
ATGATGATGATGATTT
Found at i:8355011 original size:79 final size:80
Alignment explanation
Indices: 8354871--8355033 Score: 220
Period size: 79 Copynumber: 2.0 Consensus size: 80
8354861 TACTATTACC
* * * *
8354871 CATTAGCCAGAGCCATAGAACTAATTATGGTGTCGATGATCCTACTTCTCAGGGATGT-AAAACG
1 CATTAGCCAGAGCCATAGAACTAATTATGGTATCGATGATCCCACTTCTCAAGGATATAAAAACG
8354935 TAGCTATCATAAAAT
66 TAGCTATCATAAAAT
* * * * * * *
8354950 CATTAGTCAGAGCCATAGAACTAGTTCTGGTATTGATGATCCCATTTTTCAAGGATATAAAAATG
1 CATTAGCCAGAGCCATAGAACTAATTATGGTATCGATGATCCCACTTCTCAAGGATATAAAAACG
8355015 TAGCTATCATAAAAT
66 TAGCTATCATAAAAT
8355030 CATT
1 CATT
8355034 TTTTAAACAT
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
79 48 0.67
80 24 0.33
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (80 bp):
CATTAGCCAGAGCCATAGAACTAATTATGGTATCGATGATCCCACTTCTCAAGGATATAAAAACG
TAGCTATCATAAAAT
Found at i:8360907 original size:28 final size:28
Alignment explanation
Indices: 8360867--8360943 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
8360857 TGATGAACAA
* * *
8360867 TTAGACGTGTGTTAGTGGTTTATGGAGG
1 TTAGATGTTTGTTAGTGGTTTATGGAAG
8360895 TTAGATGTTTGTTAGTGGTTTATGGAAG
1 TTAGATGTTTGTTAGTGGTTTATGGAAG
*
8360923 TTAG-TTTTGTGTTAGTGGTTT
1 TTAGATGTT-TGTTAGTGGTTT
8360944 TTGTTTATGG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 3 0.07
28 41 0.93
ACGTcount: A:0.17, C:0.01, G:0.34, T:0.48
Consensus pattern (28 bp):
TTAGATGTTTGTTAGTGGTTTATGGAAG
Found at i:8364858 original size:8 final size:8
Alignment explanation
Indices: 8364845--8364913 Score: 66
Period size: 8 Copynumber: 8.1 Consensus size: 8
8364835 GACCTCCATG
*
8364845 ATATATTT
1 ATATATTA
8364853 ATATATTAA
1 ATATATT-A
8364862 ATATATTA
1 ATATATTA
*
8364870 AAATATTAA
1 ATATATT-A
*
8364879 ATTATATTT
1 A-TATATTA
8364888 ATATATTAA
1 ATATATT-A
8364897 ATATATTA
1 ATATATTA
*
8364905 AAATATTA
1 ATATATTA
8364913 A
1 A
8364914 ATTATATTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
8 29 0.57
9 17 0.33
10 5 0.10
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATATATTA
Found at i:8364867 original size:17 final size:17
Alignment explanation
Indices: 8364845--8364927 Score: 112
Period size: 17 Copynumber: 4.8 Consensus size: 17
8364835 GACCTCCATG
*
8364845 ATATATTTATATATTAA
1 ATATATTTAAATATTAA
*
8364862 ATATATTAAAATATTAA
1 ATATATTTAAATATTAA
*
8364879 ATTATATTTATATATTAA
1 A-TATATTTAAATATTAA
*
8364897 ATATATTAAAATATTAA
1 ATATATTTAAATATTAA
8364914 ATTATATTTAAATA
1 A-TATATTTAAATA
8364928 AATATCTATA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
17 31 0.54
18 26 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATATTTAAATATTAA
Found at i:8364885 original size:35 final size:35
Alignment explanation
Indices: 8364846--8364923 Score: 156
Period size: 35 Copynumber: 2.2 Consensus size: 35
8364836 ACCTCCATGA
8364846 TATATTTATATATTAAATATATTAAAATATTAAAT
1 TATATTTATATATTAAATATATTAAAATATTAAAT
8364881 TATATTTATATATTAAATATATTAAAATATTAAAT
1 TATATTTATATATTAAATATATTAAAATATTAAAT
8364916 TATATTTA
1 TATATTTA
8364924 AATAAATATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (35 bp):
TATATTTATATATTAAATATATTAAAATATTAAAT
Done.