Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167871.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_14, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22631831
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 114000 characters in sequence are not A, C, G, or T
File 50 of 125
Found at i:9986683 original size:22 final size:22
Alignment explanation
Indices: 9986655--9986719 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
9986645 ATCGCGAATC
*
9986655 AAAATTATGCCCGAAGGTCTTA
1 AAAATTATGCCCGGAGGTCTTA
* * *
9986677 AAGATTATGCCTGGAGGTTTTA
1 AAAATTATGCCCGGAGGTCTTA
*
9986699 AAAATCATG-CCGGAGGTCTTA
1 AAAATTATGCCCGGAGGTCTTA
9986720 CAGAATCGAC
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
21 10 0.29
22 25 0.71
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.29
Consensus pattern (22 bp):
AAAATTATGCCCGGAGGTCTTA
Found at i:9986726 original size:22 final size:22
Alignment explanation
Indices: 9986669--9986726 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
9986659 TTATGCCCGA
*
9986669 AGGTCTTAA-AGATTATGCCTGG
1 AGGTCTTAAGA-ATCATGCCTGG
* *
9986691 AGGTTTTAAAAATCATGCC-GG
1 AGGTCTTAAGAATCATGCCTGG
9986712 AGGTCTTACAGAATC
1 AGGTCTTA-AGAATC
9986727 GACCAAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
21 9 0.30
22 20 0.67
23 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (22 bp):
AGGTCTTAAGAATCATGCCTGG
Found at i:9986923 original size:132 final size:131
Alignment explanation
Indices: 9986610--9987099 Score: 516
Period size: 132 Copynumber: 3.7 Consensus size: 131
9986600 GGGATAAAAT
* ** * *
9986610 CGTAAGTTAAAAAATAAAGAATTGATTAGGATAACATCGCGAATCAAAATTATGCCCGAAGGTCT
1 CGTAAGTCAAAAAATAAAGAATCAATTAGGATAACACCACGAATCAAAATTATGCCCGAAGGTCT
* * * ** * *
9986675 TAAAGATTATGCCTGGAGGTTTTAAAAATCATGCCGGAGGTCTTACAGAATCGACCAAAATAACA
66 TAAAGATTATGCCTGGAGGTCTTAAAAATCATGCCGGAAGTCTTACAAAATCGACTGAGACAACA
9986740 C
131 C
* * * ** *
9986741 CATAAGTCAAAAAATAAAGAATCAATTAGGATAACACCACGAATCGAAATTGTGCTTGAAGGTTT
1 CGTAAGTCAAAAAATAAAGAATCAATTAGGATAACACCACGAATCAAAATTATGCCCGAAGGTCT
* * * *
9986806 TAAAGATTATGCCTGGAGGTCTTAAAAATCATACTTGGAAGTATTACAAAATTGACTGAGACAAC
66 TAAAGATTATGCCTGGAGGTCTTAAAAATCATGC-CGGAAGTCTTACAAAATCGACTGAGACAAC
9986871 AC
130 AC
* *** * * *
9986873 CGTAAGTCAAAAAATAAAGAATCGA-TAGGGATAACACCGTAAATTAAAATTATGCCTGGAGGTC
1 CGTAAGTCAAAAAATAAAGAATCAATTA-GGATAACACCACGAATCAAAATTATGCCCGAAGGTC
* * * * **
9986937 TTAAATATTATGCCTGAAGGTCTTATAAATTATGCCCCAAGGTCTTACAAAATCGA-TCGAGACA
65 TTAAAGATTATGCCTGGAGGTCTTAAAAATCATGCCGGAA-GTCTTACAAAATCGACT-GAGACA
*
9987001 ACAT
128 ACAC
* * * * * * *
9987005 TGCAAGTCAAAAAATAAAGAATCAATTAAGATAACACCATGAATCGAAATTATACCCGAAGGTTT
1 CGTAAGTCAAAAAATAAAGAATCAATTAGGATAACACCACGAATCAAAATTATGCCCGAAGGTCT
** *
9987070 TAAAGATTATGTTTGGAGGTCTTATAAATC
66 TAAAGATTATGCCTGGAGGTCTTAAAAATC
9987100 TCAAAATTTT
Statistics
Matches: 293, Mismatches: 61, Indels: 9
0.81 0.17 0.02
Matches are distributed among these distances:
131 91 0.31
132 200 0.68
133 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (131 bp):
CGTAAGTCAAAAAATAAAGAATCAATTAGGATAACACCACGAATCAAAATTATGCCCGAAGGTCT
TAAAGATTATGCCTGGAGGTCTTAAAAATCATGCCGGAAGTCTTACAAAATCGACTGAGACAACA
C
Found at i:9986947 original size:22 final size:21
Alignment explanation
Indices: 9986916--9986983 Score: 91
Period size: 22 Copynumber: 3.1 Consensus size: 21
9986906 ACACCGTAAA
*
9986916 TTAAAATTATGCCTGGAGGTC
1 TTAAAATTATGCCTGAAGGTC
9986937 TTAAATATTATGCCTGAAGGTC
1 TTAAA-ATTATGCCTGAAGGTC
**
9986959 TTATAAATTATGCCCCAAGGTC
1 TTA-AAATTATGCCTGAAGGTC
9986981 TTA
1 TTA
9986984 CAAAATCGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
21 5 0.12
22 35 0.83
23 2 0.05
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (21 bp):
TTAAAATTATGCCTGAAGGTC
Found at i:9987089 original size:264 final size:263
Alignment explanation
Indices: 9986610--9987099 Score: 658
Period size: 264 Copynumber: 1.9 Consensus size: 263
9986600 GGGATAAAAT
* * * *
9986610 CGTAAGTTAAAAAATAAAGAATTGATTAGGATAACATCGCGAATCAAAATTATGCCCGAAGGTCT
1 CGTAAGTCAAAAAATAAAGAATCGATTAGGATAACACCGCAAATCAAAATTATGCCCGAAGGTCT
* * ** * *
9986675 TAAAGATTATGCCTGGAGGTTTTAAAAATCATGCCGGAGGTCTTACAGAATCGACCAAAATAACA
66 TAAAGATTATGCCTGAAGGTCTTAAAAATCATGCCCAAGGTCTTACAAAATCGACCAAAACAACA
* * * * **
9986740 CCATAAGTCAAAAAATAAAGAATCAATTAGGATAACACCACGAATCGAAATTGTGCTTGAAGGTT
131 CCACAAGTCAAAAAATAAAGAATCAATTAAGATAACACCACGAATCGAAATTATACCCGAAGGTT
9986805 TTAAAGATTATGCCTGGAGGTCTTAAAAATCATACTTGGAAGTATTACAAAATTGACTGAGACAA
196 TTAAAGATTATGCCTGGAGGTCTTAAAAATCATACTTGGAAGTATTACAAAATTGACTGAGACAA
9986870 CAC
261 CAC
* * * *
9986873 CGTAAGTCAAAAAATAAAGAATCGA-TAGGGATAACACCGTAAATTAAAATTATGCCTGGAGGTC
1 CGTAAGTCAAAAAATAAAGAATCGATTA-GGATAACACCGCAAATCAAAATTATGCCCGAAGGTC
* * * * * *
9986937 TTAAATATTATGCCTGAAGGTCTTATAAATTATGCCCCAAGGTCTTACAAAATCGATCGAGACAA
65 TTAAAGATTATGCCTGAAGGTCTTAAAAATCATG-CCCAAGGTCTTACAAAATCGACCAAAACAA
*** *
9987002 CATTGCAAGTCAAAAAATAAAGAATCAATTAAGATAACACCATGAATCGAAATTATACCCGAAGG
129 CACCACAAGTCAAAAAATAAAGAATCAATTAAGATAACACCACGAATCGAAATTATACCCGAAGG
** *
9987067 TTTTAAAGATTATGTTTGGAGGTCTTATAAATC
194 TTTTAAAGATTATGCCTGGAGGTCTTAAAAATC
9987100 TCAAAATTTT
Statistics
Matches: 192, Mismatches: 33, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
262 2 0.01
263 82 0.43
264 108 0.56
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (263 bp):
CGTAAGTCAAAAAATAAAGAATCGATTAGGATAACACCGCAAATCAAAATTATGCCCGAAGGTCT
TAAAGATTATGCCTGAAGGTCTTAAAAATCATGCCCAAGGTCTTACAAAATCGACCAAAACAACA
CCACAAGTCAAAAAATAAAGAATCAATTAAGATAACACCACGAATCGAAATTATACCCGAAGGTT
TTAAAGATTATGCCTGGAGGTCTTAAAAATCATACTTGGAAGTATTACAAAATTGACTGAGACAA
CAC
Found at i:9987223 original size:83 final size:84
Alignment explanation
Indices: 9987084--9987246 Score: 247
Period size: 83 Copynumber: 2.0 Consensus size: 84
9987074 GATTATGTTT
* * * * *
9987084 GGAGGTCTTATAAATCTCAAAATTTTTCAATGCTTCTCCCAATCAAAGGTAATAAAACTTTGAAA
1 GGAGGTCTTAGAAATCTCAAAATCTTTCAACGCTCCTCCCAATCAAAGGCAATAAAACTTTGAAA
9987149 ATTTAAAAATCTTTTACCC
66 ATTTAAAAATCTTTTACCC
* * *
9987168 GGAGGTCTTAGAAATTTCAAAATCTTTGAACG-TCCTCCCAATCAGAGGCAATAAAACTTTGAAA
1 GGAGGTCTTAGAAATCTCAAAATCTTTCAACGCTCCTCCCAATCAAAGGCAATAAAACTTTGAAA
9987232 ATTTAAAAATCTTTT
66 ATTTAAAAATCTTTT
9987247 TGAAAATGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
83 44 0.62
84 27 0.38
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (84 bp):
GGAGGTCTTAGAAATCTCAAAATCTTTCAACGCTCCTCCCAATCAAAGGCAATAAAACTTTGAAA
ATTTAAAAATCTTTTACCC
Found at i:9989256 original size:16 final size:17
Alignment explanation
Indices: 9989237--9989275 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
9989227 TTTTTTTTAT
9989237 TTTTTTGTCTTTTTG-C
1 TTTTTTGTCTTTTTGCC
* *
9989253 TTTTTTTTTTTTTTGCC
1 TTTTTTGTCTTTTTGCC
9989270 TTTTTT
1 TTTTTT
9989276 TTGTTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.00, C:0.10, G:0.08, T:0.82
Consensus pattern (17 bp):
TTTTTTGTCTTTTTGCC
Found at i:9989256 original size:24 final size:24
Alignment explanation
Indices: 9989229--9989274 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
9989219 GAAGATGTTT
*
9989229 TTTTTTATTTTTTTGTCTTTTTGC
1 TTTTTTATTTTTTTGCCTTTTTGC
*
9989253 TTTTTTTTTTTTTTGCCTTTTT
1 TTTTTTATTTTTTTGCCTTTTT
9989275 TTTGTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.02, C:0.09, G:0.07, T:0.83
Consensus pattern (24 bp):
TTTTTTATTTTTTTGCCTTTTTGC
Found at i:9989276 original size:16 final size:17
Alignment explanation
Indices: 9989236--9989283 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
9989226 TTTTTTTTTA
9989236 TTTTTTTGTCTTTTTG-C
1 TTTTTTT-TCTTTTTGCC
*
9989253 TTTTTTTTTTTTTTGCC
1 TTTTTTTTCTTTTTGCC
*
9989270 TTTTTTTTGTTTTT
1 TTTTTTTTCTTTTT
9989284 AATGATGCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.25
17 21 0.75
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.83
Consensus pattern (17 bp):
TTTTTTTTCTTTTTGCC
Found at i:9991232 original size:51 final size:51
Alignment explanation
Indices: 9991156--9991257 Score: 168
Period size: 51 Copynumber: 2.0 Consensus size: 51
9991146 TTATATATAT
* *
9991156 AAAATATATAAAATTTTATACTTGTGGAAAGTTCCTAACTTTAACAAATAA
1 AAAATATATAAAATTCTATACTTGTGGAAAGTTCCTAACCTTAACAAATAA
* *
9991207 AAAATATATAAAATTCTATATTTGTGGAAGGTTCCTAACCTTAACAAATAA
1 AAAATATATAAAATTCTATACTTGTGGAAAGTTCCTAACCTTAACAAATAA
9991258 TCTTTATTTC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (51 bp):
AAAATATATAAAATTCTATACTTGTGGAAAGTTCCTAACCTTAACAAATAA
Found at i:9991409 original size:20 final size:20
Alignment explanation
Indices: 9991384--9991424 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
9991374 GGATAGTACA
*
9991384 TATTTAGACGGATTTAGATT
1 TATTTAAACGGATTTAGATT
*
9991404 TATTTAAATGGATTTAGATT
1 TATTTAAACGGATTTAGATT
9991424 T
1 T
9991425 GGATATTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.49
Consensus pattern (20 bp):
TATTTAAACGGATTTAGATT
Found at i:10001847 original size:22 final size:21
Alignment explanation
Indices: 10001800--10001847 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
10001790 ACTTCATCTT
*
10001800 TAATAGTTAAAATTCCATTGG
1 TAATAGTTAAAATTCCATCGG
* *
10001821 TAATAGTTAATATTTTCATCGG
1 TAATAGTTAA-AATTCCATCGG
10001843 TAATA
1 TAATA
10001848 CTTGGTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (21 bp):
TAATAGTTAAAATTCCATCGG
Found at i:10008165 original size:18 final size:19
Alignment explanation
Indices: 10008142--10008179 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
10008132 TGAAATAAAG
10008142 ATAATTTACTAA-TTTATA
1 ATAATTTACTAATTTTATA
*
10008160 ATAATTTATTAATTTTATA
1 ATAATTTACTAATTTTATA
10008179 A
1 A
10008180 ATATTAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
ATAATTTACTAATTTTATA
Found at i:10008196 original size:18 final size:18
Alignment explanation
Indices: 10008151--10008206 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
10008141 GATAATTTAC
* *
10008151 TAATTTAT-AATAATTTAT
1 TAATTTATAAAT-ATTAAA
10008169 TAATTTTATAAATATTAAA
1 TAA-TTTATAAATATTAAA
* *
10008188 TAATTTATACATTTTAAA
1 TAATTTATAAATATTAAA
10008206 T
1 T
10008207 TAATGTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 17 0.53
19 12 0.38
20 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATTTATAAATATTAAA
Found at i:10008210 original size:19 final size:19
Alignment explanation
Indices: 10008167--10008210 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
10008157 ATAATAATTT
10008167 ATTAATTTTATAAATATTAA
1 ATTAA-TTTATAAATATTAA
* *
10008187 A-TAATTTATACATTTTAA
1 ATTAATTTATAAATATTAA
10008205 ATTAAT
1 ATTAAT
10008211 GTTTTTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 13 0.62
19 7 0.33
20 1 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTAATTTATAAATATTAA
Found at i:10015355 original size:3 final size:3
Alignment explanation
Indices: 10015338--10015385 Score: 80
Period size: 3 Copynumber: 16.0 Consensus size: 3
10015328 TTTTATTTTC
10015338 ATT ATT -TT CATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10015383 ATT
1 ATT
10015386 TATTTAATTT
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.05
3 39 0.91
4 2 0.05
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:10015404 original size:6 final size:6
Alignment explanation
Indices: 10015395--10015427 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
10015385 TTATTTAATT
*
10015395 TTTTTC TTTTT- TTTTTC TTTTTC TCTTTC TTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTT
10015428 CTTCCCGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:10015409 original size:11 final size:11
Alignment explanation
Indices: 10015393--10015427 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
10015383 ATTTATTTAA
10015393 TTTTTTTCTTT
1 TTTTTTTCTTT
10015404 TTTTTTTCTTT
1 TTTTTTTCTTT
*
10015415 TTCTCTTTCTTT
1 TT-TTTTTCTTT
10015427 T
1 T
10015428 CTTCCCGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 13 0.59
12 9 0.41
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:10015417 original size:17 final size:17
Alignment explanation
Indices: 10015395--10015430 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
10015385 TTATTTAATT
* *
10015395 TTTTTCTTTTTTTTTTC
1 TTTTTCTCTTTCTTTTC
10015412 TTTTTCTCTTTCTTTTC
1 TTTTTCTCTTTCTTTTC
10015429 TT
1 TT
10015431 CCCGTTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTCTCTTTCTTTTC
Found at i:10017035 original size:12 final size:12
Alignment explanation
Indices: 10017015--10017048 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
10017005 AATTTTAATT
10017015 TTAATTAAAAAAA
1 TTAA-TAAAAAAA
*
10017028 TTAATAAAACAA
1 TTAATAAAAAAA
10017040 TTAATAAAA
1 TTAATAAAA
10017049 TTTTTGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (12 bp):
TTAATAAAAAAA
Found at i:10017348 original size:195 final size:195
Alignment explanation
Indices: 10017096--10017487 Score: 646
Period size: 195 Copynumber: 2.0 Consensus size: 195
10017086 TGCATTGCAT
* *
10017096 ACATGACATAATTTTTTACGAAAAGTAAATTTAGACCTCCCAAAGATGAGATTCTAAAAGTATTC
1 ACATGACAT-ATTTCTTACGAAAAATAAATTTAGACCTCCCAAAGATGAGATTCTAAAAGTATTC
* *
10017161 TGAGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTG
65 CGAGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACAG
*
10017226 GAACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAATAAAATTTTTT
130 GAACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCAAGAAT--AATTTTTT
10017291 TTA
193 TTA
* *
10017294 ACATGACAT-TTTCTTACGAAAAATAAATTT-GAGCGT-CTAAAGATGAGATTCTAAAAGTATTC
1 ACATGACATATTTCTTACGAAAAATAAATTTAGA-CCTCCCAAAGATGAGATTCTAAAAGTATTC
*
10017356 CGAGTAGAGATGCTTTAAGAAATCTTTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACAG
65 CGAGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACAG
*
10017421 GAACATTTTAAGAATTATTTCAATAAAAAGGTTTTGATTTATTTTTCTCAAGAATAATTTTTTTT
130 GAACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCAAGAATAATTTTTTTT
10017486 A
195 A
10017487 A
1 A
10017488 TAAATAAAAA
Statistics
Matches: 184, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
193 12 0.07
195 142 0.77
196 21 0.11
198 9 0.05
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (195 bp):
ACATGACATATTTCTTACGAAAAATAAATTTAGACCTCCCAAAGATGAGATTCTAAAAGTATTCC
GAGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACAGG
AACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCAAGAATAATTTTTTTTA
Found at i:10017967 original size:10 final size:10
Alignment explanation
Indices: 10017949--10018011 Score: 65
Period size: 10 Copynumber: 6.0 Consensus size: 10
10017939 ATTTTTTAGT
10017949 AAAAAAAAAC
1 AAAAAAAAAC
*
10017959 AAAACAAAAC
1 AAAAAAAAAC
*
10017969 AAATAAAAAAT
1 AAA-AAAAAAC
10017980 AAAAAATAAA-
1 AAAAAA-AAAC
10017990 AAGCAAAAAAAC
1 AA--AAAAAAAC
10018002 AAAAAAAAAC
1 AAAAAAAAAC
10018012 TCACACACAT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
10 25 0.56
11 14 0.31
12 6 0.13
ACGTcount: A:0.84, C:0.10, G:0.02, T:0.05
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:10018005 original size:14 final size:13
Alignment explanation
Indices: 10017951--10018010 Score: 50
Period size: 14 Copynumber: 4.4 Consensus size: 13
10017941 TTTTTAGTAA
10017951 AAAAAAACAAAAC
1 AAAAAAACAAAAC
* *
10017964 AAAACAAATAAAAA
1 AAAA-AAACAAAAC
*
10017978 ATAAAAAATAAAAAGC
1 A-AAAAAA-CAAAA-C
10017994 AAAAAAACAAAA-
1 AAAAAAACAAAAC
10018006 AAAAA
1 AAAAA
10018011 CTCACACACA
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
12 5 0.13
13 4 0.11
14 15 0.39
15 13 0.34
16 1 0.03
ACGTcount: A:0.85, C:0.08, G:0.02, T:0.05
Consensus pattern (13 bp):
AAAAAAACAAAAC
Found at i:10027485 original size:47 final size:46
Alignment explanation
Indices: 10027431--10028116 Score: 934
Period size: 46 Copynumber: 14.8 Consensus size: 46
10027421 TTTGAAACAG
* *
10027431 AGAGAATTTTTAAAGTTGTTGAGCCTCTACTGCAGA-GAGC-TTTCCA
1 AGAGAA-TTTTAAAGTTGTTGAGCCTCTGCTG-AGAGGAGCTTTTTCA
*
10027477 AGATGAATTTTAAA-TTGTTGAGCCTC-GTTGA-AGGATGCTTTTTTTCA
1 AGA-GAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGA-GC--TTTTTCA
* * * *
10027524 TA-AG-ATTTTAAAGTTATTGAGCCTCTACTGAGAGGAGCATTTCCA
1 -AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
10027569 AGAG-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
1 AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
10027614 AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTC-
1 AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
10027658 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTCA
1 AGA-GA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
*
10027705 AGAG-ATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGC-TTTTCA
1 AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
*
10027749 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCA
1 AGA-GA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
*
10027797 AAAGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTCA
1 AGAGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
10027843 AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCA
1 AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCA
* *
10027890 AAAG-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCA
1 AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
**
10027935 AGATGAAATTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTTTTTTTCA
1 AGA-G-AATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC--TTTTTCA
*
10027985 AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTCA
1 AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * *
10028031 AGAGAATTTTTAAAGTTGTTGAGCCTTTGGTGAGAGGAGCTTTTTTA
1 AGAGAA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
*
10028078 AGAGAATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGC
1 AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC
10028117 CTTGTAAACT
Statistics
Matches: 579, Mismatches: 34, Indels: 54
0.87 0.05 0.08
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 50 0.09
45 118 0.20
46 183 0.32
47 138 0.24
48 76 0.13
49 1 0.00
50 9 0.02
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (46 bp):
AGAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
Found at i:10027592 original size:91 final size:90
Alignment explanation
Indices: 10027438--10028116 Score: 924
Period size: 91 Copynumber: 7.4 Consensus size: 90
10027428 CAGAGAGAAT
*
10027438 TTTTAAAGTTGTTGAGCCTCTACTGCAGA-GAGCTTTCCAAGATGAATTTTAAA-TTGTTGAGCC
1 TTTTAAAGTTGTTGAGCCTCTGCTG-AGAGGAGCTTTCCAAGA-GAATTTTAAAGTTGTTGAGCC
*
10027501 TC-GTTGA-AGGATGCTTTTTTTCATA-AGA
64 TCTGCTGAGAGGA-GC--TTTTTCA-AGAGA
* *
10027529 TTTTAAAGTTATTGAGCCTCTACTGAGAGGAGCATTTCCAAGAG-ATTTTAAAGTTGTTGAGCCT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTCCAAGAGAATTTTAAAGTTGTTGAGCCT
10027593 CTGCTGAGAGGAGCTTTTTCAAGAGAA
65 CTGCTGAGAGGAGCTTTTTCAAGAG-A
*
10027620 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTC-AGATGAGATTTTAAAGTTGTTGAGCC
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTCCAAGA-GA-ATTTTAAAGTTGTTGAGCC
10027684 TCTGCTGAGAGGAGC-TTTTCAAGAGA
64 TCTGCTGAGAGGAGCTTTTTCAAGAGA
* *
10027710 TTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCAAGATGAGATTTTAAAGTTGTTGAGCC
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTCCAAGA-GA-ATTTTAAAGTTGTTGAGCC
*
10027775 TCTGCTGAGAGGAGCTTTTCCAAAAGAGA
64 TCTGCTGAGAGGAGCTTTTTC--AAGAGA
*
10027804 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCAAGAGAATTTTAAAGTTGTTGAGCCTC
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTCCAAGAGAATTTTAAAGTTGTTGAGCCTC
*
10027869 TGCTGAGAGGAGCCTTTTTCAAAAGA
66 TGCTGAGAGGAG-CTTTTTCAAGAGA
10027895 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAATTTTAAAGTTGTTGAGC
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTCCAAGA-G-AATTTTAAAGTTGTTGAGC
**
10027960 CTCTATTGAGAGGAGCTTTTTTTCAAGAGAA
63 CTCTGCTGAGAGGAGC--TTTTTCAAGAG-A
* *
10027991 TTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTCAAGAGAATTTTTAAAGTTGTTGAGCC
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTCCAAGAGAA-TTTTAAAGTTGTTGAGCC
* * *
10028056 TTTGGTGAGAGGAGCTTTTTTAAGAGAA
64 TCTGCTGAGAGGAGCTTTTTCAAGAG-A
*
10028084 TTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGC
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC
10028117 CTTGTAAACT
Statistics
Matches: 544, Mismatches: 22, Indels: 42
0.89 0.04 0.07
Matches are distributed among these distances:
89 4 0.01
90 63 0.12
91 162 0.30
92 94 0.17
93 57 0.10
94 81 0.15
95 41 0.08
96 42 0.08
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (90 bp):
TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTCCAAGAGAATTTTAAAGTTGTTGAGCCTC
TGCTGAGAGGAGCTTTTTCAAGAGA
Found at i:10028297 original size:3 final size:3
Alignment explanation
Indices: 10028289--10028318 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
10028279 TGTAAACATC
10028289 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10028319 TAATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:10030505 original size:22 final size:22
Alignment explanation
Indices: 10030480--10030539 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 22
10030470 AATCAAATTT
*
10030480 ATGCCCGGAGGTCTTAGAAATC
1 ATGCCCGGAGGTCTTAAAAATC
10030502 ATGCCCGGAGGTCTTAAAAATC
1 ATGCCCGGAGGTCTTAAAAATC
**
10030524 ATGCTTGGAGGTCTTA
1 ATGCCCGGAGGTCTTA
10030540 CAGAATTGAC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (22 bp):
ATGCCCGGAGGTCTTAAAAATC
Found at i:10030675 original size:130 final size:128
Alignment explanation
Indices: 10030415--10030676 Score: 373
Period size: 130 Copynumber: 2.0 Consensus size: 128
10030405 NNNNNNNNNT
* *
10030415 ATTGACTGGGATAACACCGCAAGTTAAAATTATAGAATTGACCGGATAACACGCGAATCAAATTT
1 ATTGACTAGGATAACACCGCAAGTCAAAATTATAGAATTGACCGGATAACACGCGAATCAAATTT
* ** * *
10030480 ATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTAAAAATCATGCTTGGAGGTCTTACAGA
66 ATGCCCGGAGGTCTTACAAAT-ATGCCCGGAGGTCTTAAAAATCATGCCCGAAAGTCTTACAGA
* *
10030544 ATTGACTAGGATAACACCGTAAGTCAAAATTATAGAATTGATCGAGATAACATCGCGAATCAAAT
1 ATTGACTAGGATAACACCGCAAGTCAAAATTATAGAATTGACCG-GATAACA-CGCGAATCAAAT
* * *
10030609 TTATGCCCGGAGGTCTTACAGAAT-TGTCCGGAGGTCTTAAAAATTATGCCCGAAAGTCTTATAG
64 TTATGCCCGGAGGTCTTACA-AATATGCCCGGAGGTCTTAAAAATCATGCCCGAAAGTCTTACAG
10030673 A
128 A
10030674 ATT
1 ATT
10030677 TCAAAATCTT
Statistics
Matches: 118, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
129 40 0.34
130 44 0.37
131 31 0.26
132 3 0.03
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (128 bp):
ATTGACTAGGATAACACCGCAAGTCAAAATTATAGAATTGACCGGATAACACGCGAATCAAATTT
ATGCCCGGAGGTCTTACAAATATGCCCGGAGGTCTTAAAAATCATGCCCGAAAGTCTTACAGA
Found at i:10030853 original size:9 final size:8
Alignment explanation
Indices: 10030830--10030854 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
10030820 GCAATGAAAC
10030830 TTTAAAAA
1 TTTAAAAA
10030838 TTTAAAAA
1 TTTAAAAA
10030846 TTTAAAAA
1 TTTAAAAA
10030854 T
1 T
10030855 CTTTTAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TTTAAAAA
Found at i:10030888 original size:131 final size:131
Alignment explanation
Indices: 10030726--10030977 Score: 459
Period size: 131 Copynumber: 1.9 Consensus size: 131
10030716 AACTTTAAAA
10030726 TTTAAAACTTGAAAGTCGTGCACAGAAGCTTTTAGAGATTATGCCCGGAGGTCTTATAAATCTCA
1 TTTAAAACTTGAAAGTCGTGCACAGAAGCTTTTAGAGATTATGCCCGGAGGTCTTATAAATCTCA
10030791 AAATCTTTGAATGATCCTCATAACCAGAGGCAATGAAACTTTAAAAATTTAAAAATTTAAAAATC
66 AAATCTTTGAATGATCCTCATAACCAGAGGCAATGAAACTTTAAAAATTTAAAAATTTAAAAATC
10030856 T
131 T
**
10030857 TTTAAAACTTGAAAGTCGTGCACAGGGGCTTTTAGAGATTATGCCCGGAGGTCTTATAAATCTCA
1 TTTAAAACTTGAAAGTCGTGCACAGAAGCTTTTAGAGATTATGCCCGGAGGTCTTATAAATCTCA
* * *
10030922 AAATCTTTGAATGCTCCTCATAATCAGAGGCAATGAAACTTTAAAATTTTAAAAAT
66 AAATCTTTGAATGATCCTCATAACCAGAGGCAATGAAACTTTAAAAATTTAAAAAT
10030978 CTTTTAAAAC
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
131 116 1.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (131 bp):
TTTAAAACTTGAAAGTCGTGCACAGAAGCTTTTAGAGATTATGCCCGGAGGTCTTATAAATCTCA
AAATCTTTGAATGATCCTCATAACCAGAGGCAATGAAACTTTAAAAATTTAAAAATTTAAAAATC
T
Found at i:10031132 original size:40 final size:41
Alignment explanation
Indices: 10031042--10031149 Score: 150
Period size: 40 Copynumber: 2.7 Consensus size: 41
10031032 TTCTGAGGAA
*
10031042 GGTTCC-CTTTAAACAGAGGCTTTAAAATCTTGATTGAAATT
1 GGTTCCTC-TTAAACAGAGGCTTTAAAATCTTGATTGAAATC
10031083 GGTTCCTCTTAAACAGAGGCTTTAAAAT-TTGATTGAGAA-C
1 GGTTCCTCTTAAACAGAGGCTTTAAAATCTTGATTGA-AATC
* *
10031123 GGTTTCTCTTAAACAGAGACTTTAAAA
1 GGTTCCTCTTAAACAGAGGCTTTAAAA
10031150 CTTTAAAAAC
Statistics
Matches: 62, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
40 33 0.53
41 28 0.45
42 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (41 bp):
GGTTCCTCTTAAACAGAGGCTTTAAAATCTTGATTGAAATC
Found at i:10031538 original size:23 final size:24
Alignment explanation
Indices: 10031488--10031538 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
10031478 TGCTTTACTT
*
10031488 TTTTGTGAAAAATTTTTATTT-AT
1 TTTTGTGAAAAATTTTTATTTAAA
* *
10031511 TTTTTTGAAAAATTTTTTTTTAAA
1 TTTTGTGAAAAATTTTTATTTAAA
10031535 TTTT
1 TTTT
10031539 CATTGTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (24 bp):
TTTTGTGAAAAATTTTTATTTAAA
Found at i:10031538 original size:25 final size:24
Alignment explanation
Indices: 10031481--10031532 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
10031471 CTCTTCTTGC
10031481 TTTACTTTTTTGTGAAAAATTTTTA
1 TTTA-TTTTTTGTGAAAAATTTTTA
*
10031506 TTTATTTTTT-TGAAAAATTTTTT
1 TTTATTTTTTGTGAAAAATTTTTA
10031529 TTTA
1 TTTA
10031533 AATTTTCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 16 0.62
24 6 0.23
25 4 0.15
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (24 bp):
TTTATTTTTTGTGAAAAATTTTTA
Found at i:10032838 original size:19 final size:19
Alignment explanation
Indices: 10032814--10032871 Score: 91
Period size: 19 Copynumber: 3.0 Consensus size: 19
10032804 AATATGTCCA
10032814 TTTTGTTTTTTTTTTTTTT
1 TTTTGTTTTTTTTTTTTTT
10032833 TTTTGTTTTTTTTTTTTTT
1 TTTTGTTTTTTTTTTTTTT
10032852 TTTT-TTTGTTTTTTTGTTTT
1 TTTTGTTT-TTTTTTT-TTTT
10032872 CATTTTTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
18 3 0.08
19 30 0.81
20 4 0.11
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (19 bp):
TTTTGTTTTTTTTTTTTTT
Found at i:10032847 original size:22 final size:22
Alignment explanation
Indices: 10032819--10032880 Score: 97
Period size: 22 Copynumber: 2.8 Consensus size: 22
10032809 GTCCATTTTG
10032819 TTTTTTTTTTTTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTGTTT
10032841 TTTTTTTTTTTTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTGTTT
* **
10032863 TTTTGTTTTCATTTTTTT
1 TTTTTTTTTTTTTTTTTT
10032881 ATGCCCATCC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.02, C:0.02, G:0.05, T:0.92
Consensus pattern (22 bp):
TTTTTTTTTTTTTTTTTTGTTT
Found at i:10032855 original size:30 final size:30
Alignment explanation
Indices: 10032812--10032880 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
10032802 TGAATATGTC
10032812 CATTTTGTTTTTTTTTTT-TTTTTTTGTTTT
1 CATTTT-TTTTTTTTTTTGTTTTTTTGTTTT
**
10032842 TTTTTTTTTTTTTTTTTGTTTTTTTGTTTT
1 CATTTTTTTTTTTTTTTGTTTTTTTGTTTT
10032872 CATTTTTTT
1 CATTTTTTT
10032881 ATGCCCATCC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 11 0.32
30 23 0.68
ACGTcount: A:0.03, C:0.03, G:0.06, T:0.88
Consensus pattern (30 bp):
CATTTTTTTTTTTTTTTGTTTTTTTGTTTT
Found at i:10032880 original size:1 final size:1
Alignment explanation
Indices: 10032814--10032871 Score: 80
Period size: 1 Copynumber: 58.0 Consensus size: 1
10032804 AATATGTCCA
* * * *
10032814 TTTTGTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
10032872 CATTTTTTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (1 bp):
T
Found at i:10038659 original size:16 final size:16
Alignment explanation
Indices: 10038642--10038724 Score: 75
Period size: 16 Copynumber: 5.4 Consensus size: 16
10038632 TCTTTAGGAT
10038642 TTTTA-GGACTTTGGA
1 TTTTAGGGACTTTGGA
* * *
10038657 TTTCATGGATTTTGGA
1 TTTTAGGGACTTTGGA
*
10038673 TTTTAGGGAATTTGGA
1 TTTTAGGGACTTTGGA
* *
10038689 TTTAAGGGA-TTTTGA
1 TTTTAGGGACTTTGGA
*
10038704 TTTT-GGG-GTTTGGA
1 TTTTAGGGACTTTGGA
10038718 TTTTAGG
1 TTTTAGG
10038725 ATTTTGAAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
14 12 0.21
15 14 0.25
16 30 0.54
ACGTcount: A:0.19, C:0.02, G:0.30, T:0.48
Consensus pattern (16 bp):
TTTTAGGGACTTTGGA
Found at i:10038674 original size:32 final size:33
Alignment explanation
Indices: 10038638--10038730 Score: 92
Period size: 32 Copynumber: 3.0 Consensus size: 33
10038628 CGTGTCTTTA
* * *
10038638 GGATTTTTA-GGACTTTGGATTTCATGGATTTT
1 GGATTTTTAGGGAATTTGGATTTAAGGGATTTT
10038670 GGA-TTTTAGGGAATTTGGATTTAAGGGATTTT
1 GGATTTTTAGGGAATTTGGATTTAAGGGATTTT
* *
10038702 -GA-TTTT-GGG-GTTTGGATTTTA-GGATTTT
1 GGATTTTTAGGGAATTTGGATTTAAGGGATTTT
10038730 G
1 G
10038731 AAAATTAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
28 7 0.13
29 10 0.19
30 3 0.06
31 11 0.20
32 23 0.43
ACGTcount: A:0.19, C:0.02, G:0.30, T:0.48
Consensus pattern (33 bp):
GGATTTTTAGGGAATTTGGATTTAAGGGATTTT
Found at i:10039116 original size:12 final size:12
Alignment explanation
Indices: 10039101--10039128 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
10039091 AAATATACTT
10039101 AAAATAATATAA
1 AAAATAATATAA
10039113 AAAATAATATAA
1 AAAATAATATAA
10039125 AAAA
1 AAAA
10039129 ATTAGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:10039125 original size:22 final size:22
Alignment explanation
Indices: 10039084--10039126 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10039074 ATCATGCATA
*
10039084 AATATAAAAATATACTTAAAAT
1 AATATAAAAATATAATTAAAAT
10039106 AATATAAAAA-ATAATATAAAA
1 AATATAAAAATATAAT-TAAAA
10039127 AAATTAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (22 bp):
AATATAAAAATATAATTAAAAT
Found at i:10039921 original size:22 final size:22
Alignment explanation
Indices: 10039894--10039936 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10039884 GGGATTACCG
*
10039894 AGATCTGTTG-AAGGAGATTTCA
1 AGATCTATTGAAAGGA-ATTTCA
10039916 AGATCTATTGAAAGGAATTTC
1 AGATCTATTGAAAGGAATTTC
10039937 CCAGAGGGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33
Consensus pattern (22 bp):
AGATCTATTGAAAGGAATTTCA
Found at i:10040221 original size:12 final size:15
Alignment explanation
Indices: 10040186--10040240 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
10040176 ACAATTTTTT
*
10040186 ATATTTTTATATAATTA
1 ATATTATTAT-TAA-TA
10040203 ATAATTATT-TT-A-A
1 AT-ATTATTATTAATA
10040216 ATATTATTATTAATA
1 ATATTATTATTAATA
10040231 ATATTATTAT
1 ATATTATTAT
10040241 CATTAAAGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
12 6 0.18
13 5 0.15
14 1 0.03
15 12 0.36
16 1 0.03
17 3 0.09
18 5 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATATTATTATTAATA
Found at i:10040310 original size:22 final size:21
Alignment explanation
Indices: 10040285--10040430 Score: 204
Period size: 22 Copynumber: 6.9 Consensus size: 21
10040275 GGTGTCTACA
10040285 CAAATGAGAATCTTTGAGTTTT
1 CAAATGAGAATCTTTGAG-TTT
* *
10040307 CAAATGAAAAACTTTGAGTTTT
1 CAAATGAGAATCTTTGAG-TTT
10040329 CAAATGAGAATCTTTGAGTTT
1 CAAATGAGAATCTTTGAGTTT
* *
10040350 CGAATAAGAATCTTTGAGTTTT
1 CAAATGAGAATCTTTGAG-TTT
*
10040372 CAAATGAAAATCTTTGAGTTT
1 CAAATGAGAATCTTTGAGTTT
10040393 CAAATGAG-ATCTTTGAGTTT
1 CAAATGAGAATCTTTGAGTTT
*
10040413 CAAATAAGAATCTTTGAG
1 CAAATGAGAATCTTTGAG
10040431 ACGCAAAACC
Statistics
Matches: 111, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
20 19 0.17
21 38 0.34
22 54 0.49
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (21 bp):
CAAATGAGAATCTTTGAGTTT
Found at i:10040384 original size:43 final size:43
Alignment explanation
Indices: 10040285--10040430 Score: 192
Period size: 43 Copynumber: 3.4 Consensus size: 43
10040275 GGTGTCTACA
* *
10040285 CAAATGAGAATCTTTGAGTTTTCAAATGAA-AAACTTTGAGTTTT
1 CAAATGAAAATCTTTGAG-TTTCAAAT-AAGAATCTTTGAGTTTT
* *
10040329 CAAATGAGAATCTTTGAGTTTCGAATAAGAATCTTTGAGTTTT
1 CAAATGAAAATCTTTGAGTTTCAAATAAGAATCTTTGAGTTTT
*
10040372 CAAATGAAAATCTTTGAGTTTCAAATGAG-ATCTTTGAG-TTT
1 CAAATGAAAATCTTTGAGTTTCAAATAAGAATCTTTGAGTTTT
10040413 CAAAT-AAGAATCTTTGAG
1 CAAATGAA-AATCTTTGAG
10040431 ACGCAAAACC
Statistics
Matches: 95, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
40 2 0.02
41 18 0.19
42 11 0.12
43 46 0.48
44 18 0.19
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (43 bp):
CAAATGAAAATCTTTGAGTTTCAAATAAGAATCTTTGAGTTTT
Found at i:10040820 original size:21 final size:21
Alignment explanation
Indices: 10040794--10040836 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
10040784 ATCTTTCGGG
*
10040794 TGTGAATCTCCAGAATTTGAA
1 TGTGAATCTCCAAAATTTGAA
10040815 TGTGAATCTCCAAAATTTGAA
1 TGTGAATCTCCAAAATTTGAA
10040836 T
1 T
10040837 CTTTAAATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (21 bp):
TGTGAATCTCCAAAATTTGAA
Found at i:10041251 original size:44 final size:42
Alignment explanation
Indices: 10041175--10041370 Score: 157
Period size: 44 Copynumber: 4.5 Consensus size: 42
10041165 GATTATCGAC
* * *
10041175 GAGCTTTATTTATTTT-TCAAAGTTGTTGAGCCTTTGATTAGA
1 GAGC-TTATTTATTTTCTCAAAGTTGATAAGCCTCTGATTAGA
10041217 GAGGTCTTATTTATTTTCTCAAAGTTGATAAGCCTCTGATTAGA
1 GA-G-CTTATTTATTTTCTCAAAGTTGATAAGCCTCTGATTAGA
* * * * *
10041261 GAAGC-TATTTATTTTTTCAAAGTT-ATTGAGCCTTTGCTTAAA
1 G-AGCTTATTTATTTTCTCAAAGTTGA-TAAGCCTCTGATTAGA
* * * * *
10041303 TGAGCCCTATTTTTTTTTTCAAAGTTGTTAAGCCTCTAATTAGA
1 -GAG-CTTATTTATTTTCTCAAAGTTGATAAGCCTCTGATTAGA
*
10041347 GAAACTTTATTTATTTTC-CAAAGT
1 G-AGC-TTATTTATTTTCTCAAAGT
10041371 CGTTGAGCTT
Statistics
Matches: 124, Mismatches: 19, Indels: 21
0.76 0.12 0.13
Matches are distributed among these distances:
41 1 0.01
42 34 0.27
43 23 0.19
44 65 0.52
45 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.45
Consensus pattern (42 bp):
GAGCTTATTTATTTTCTCAAAGTTGATAAGCCTCTGATTAGA
Found at i:10041284 original size:86 final size:86
Alignment explanation
Indices: 10041180--10041378 Score: 249
Period size: 86 Copynumber: 2.3 Consensus size: 86
10041170 TCGACGAGCT
* * *
10041180 TTATTTATTTTTCAAAGTTGTTGAGCCTTTGATTAGA-GAGGTCTTATTTATTTTCTCAAAGTTG
1 TTATTTATTTTTCAAAGTTGTTGAGCCTTTGATTAAATGA-GCCCTATTTATTTTCTCAAAGTTG
* *
10041244 ATAAGCCTCTGATTAGAGAAGC
65 ATAAGCCTCTAATTAGAGAAAC
* * * *
10041266 -TATTTATTTTTTCAAAGTTATTGAGCCTTTGCTTAAATGAGCCCTATTTTTTTTTTCAAAGTTG
1 TTATTTA-TTTTTCAAAGTTGTTGAGCCTTTGATTAAATGAGCCCTATTTATTTTCTCAAAGTTG
*
10041330 TTAAGCCTCTAATTAGAGAAAC
65 ATAAGCCTCTAATTAGAGAAAC
* *
10041352 TTTATTTATTTTCCAAAGTCGTTGAGC
1 -TTATTTATTTTTCAAAGTTGTTGAGC
10041379 TTCAATTTAG
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
85 6 0.06
86 66 0.69
87 18 0.19
88 6 0.06
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.45
Consensus pattern (86 bp):
TTATTTATTTTTCAAAGTTGTTGAGCCTTTGATTAAATGAGCCCTATTTATTTTCTCAAAGTTGA
TAAGCCTCTAATTAGAGAAAC
Found at i:10041404 original size:86 final size:85
Alignment explanation
Indices: 10041178--10041407 Score: 227
Period size: 86 Copynumber: 2.7 Consensus size: 85
10041168 TATCGACGAG
* * *
10041178 CTTTATTTATTTTTCAAAGTTGTTGAGCCTTTGATTAGA-GAGGTCTTATTTATTTTCTCAAAGT
1 CTTTATTTATTTTTCAAAGTTGTTGAGCC-TTAATTAGATGAGCTATTATTT-TTTT-TCAAAGT
* *
10041242 TGATAAGCCTCTGATTAGAGAAG
63 TGATAAGCCTCTAATTAGAGAAA
* ** *
10041265 C--TATTTATTTTTTCAAAGTTATTGAGCCTTTGCTTAAATGAGCCCTATT-TTTTTTTTCAAAG
1 CTTTATTTA-TTTTTCAAAGTTGTTGAGCC-TTAATTAGATGAG--CTATTATTTTTTTTCAAAG
*
10041327 TTGTTAAGCCTCTAATTAGAGAAA
62 TTGATAAGCCTCTAATTAGAGAAA
* * *
10041351 CTTTATTTATTTTCCAAAGTCGTTGAG-CTTCAATTTAGATGAGCTTTTATTTTTTTT
1 CTTTATTTATTTTTCAAAGTTGTTGAGCCTT-AA-TTAGATGAGCTATTATTTTTTTT
10041408 TTCAAAAGTC
Statistics
Matches: 119, Mismatches: 15, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
85 12 0.10
86 64 0.54
87 31 0.26
88 9 0.08
89 3 0.03
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.47
Consensus pattern (85 bp):
CTTTATTTATTTTTCAAAGTTGTTGAGCCTTAATTAGATGAGCTATTATTTTTTTTCAAAGTTGA
TAAGCCTCTAATTAGAGAAA
Found at i:10041827 original size:21 final size:20
Alignment explanation
Indices: 10041789--10041826 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10041779 TATTTTTATT
*
10041789 ATTTTTTAAAAACATTTTGA
1 ATTTATTAAAAACATTTTGA
*
10041809 ATTTATTAAAAATATTTT
1 ATTTATTAAAAACATTTT
10041827 TTTAACTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (20 bp):
ATTTATTAAAAACATTTTGA
Found at i:10042934 original size:19 final size:18
Alignment explanation
Indices: 10042903--10042938 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
10042893 TGGATATAGA
*
10042903 TAAAAAAATATAATATAT
1 TAAAAAAAAATAATATAT
10042921 TAAAAGAAAAATAATATA
1 TAAAA-AAAAATAATATA
10042939 AGATTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (18 bp):
TAAAAAAAAATAATATAT
Found at i:10050266 original size:21 final size:22
Alignment explanation
Indices: 10050234--10050287 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
10050224 TTGGATGTAT
* *
10050234 ATATTTTATAAAATAATTATAC
1 ATATATTATAAAATAAATATAC
*
10050256 ATATA-TATAAACTAAATATAC
1 ATATATTATAAAATAAATATAC
10050277 ATATATTATAA
1 ATATATTATAA
10050288 TTTTGAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (22 bp):
ATATATTATAAAATAAATATAC
Found at i:10056856 original size:64 final size:64
Alignment explanation
Indices: 10056755--10056877 Score: 194
Period size: 64 Copynumber: 1.9 Consensus size: 64
10056745 TTTTTCATAT
* *
10056755 ACAACTTTTTAAAATGTTTAAAGTTAATCTATTATTCCAATCATTGTTAAAAGTTTAATAGAAC
1 ACAACCTTTTAAAATGTTTAAAGTTAATCTATTATTCCAATCATTGTTAAAAATTTAATAGAAC
* *
10056819 ACAACCTTTTAAAATATTTTAAA-TTCATCTATTATTCCAATCATTGTTAAAAATTTAAT
1 ACAACCTTTTAAAAT-GTTTAAAGTTAATCTATTATTCCAATCATTGTTAAAAATTTAAT
10056878 GGATGTGCAT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
64 48 0.89
65 6 0.11
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.42
Consensus pattern (64 bp):
ACAACCTTTTAAAATGTTTAAAGTTAATCTATTATTCCAATCATTGTTAAAAATTTAATAGAAC
Found at i:10059449 original size:63 final size:64
Alignment explanation
Indices: 10059372--10059493 Score: 210
Period size: 63 Copynumber: 1.9 Consensus size: 64
10059362 TTTTTGGTGT
* * *
10059372 ACAACTTTTTAAAATGTTTTAAGTTCATCTATTATTCCAATCATTGTT-AAAATTTAATAGAAC
1 ACAACCTTTTAAAATATTTTAAATTCATCTATTATTCCAATCATTGTTAAAAATTTAATAGAAC
10059435 ACAACCTTTTAAAATATTTTAAATTCATCTATTATTCCAATCATTGTTAAAAATTTAAT
1 ACAACCTTTTAAAATATTTTAAATTCATCTATTATTCCAATCATTGTTAAAAATTTAAT
10059494 GGATGTGCAT
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
63 45 0.82
64 10 0.18
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.43
Consensus pattern (64 bp):
ACAACCTTTTAAAATATTTTAAATTCATCTATTATTCCAATCATTGTTAAAAATTTAATAGAAC
Found at i:10067711 original size:14 final size:14
Alignment explanation
Indices: 10067688--10067717 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10067678 AATTCTCTCA
*
10067688 TTTTATTTTAGTTT
1 TTTTAATTTAGTTT
10067702 TTTTAATTTAGTTT
1 TTTTAATTTAGTTT
10067716 TT
1 TT
10067718 AAGTACTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.77
Consensus pattern (14 bp):
TTTTAATTTAGTTT
Found at i:10070431 original size:65 final size:65
Alignment explanation
Indices: 10070325--10070456 Score: 237
Period size: 65 Copynumber: 2.0 Consensus size: 65
10070315 ATGTGTCTAC
* *
10070325 ATTATTATTTATATAATTTTTCATTCGTAAGTATAGCGCCAAAATTTTATAGGTATGCCAAAAAT
1 ATTATTATTTATATAATTTTTCATTCGTAAGTATAGCGCCAAAATTTTATAGATACGCCAAAAAT
*
10070390 ATTATTATTTATATAATTTTTCATTCGTAAGTATAGTGCCAAAATTTTATAGATACGCCAAAAAT
1 ATTATTATTTATATAATTTTTCATTCGTAAGTATAGCGCCAAAATTTTATAGATACGCCAAAAAT
10070455 AT
1 AT
10070457 ACCAATGAAA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.42
Consensus pattern (65 bp):
ATTATTATTTATATAATTTTTCATTCGTAAGTATAGCGCCAAAATTTTATAGATACGCCAAAAAT
Found at i:10082666 original size:7 final size:7
Alignment explanation
Indices: 10082654--10082679 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10082644 AAATGTAGAT
10082654 TTTAAAA
1 TTTAAAA
10082661 TTTAAAA
1 TTTAAAA
10082668 TTTAAAA
1 TTTAAAA
10082675 TTTAA
1 TTTAA
10082680 CTTTATAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TTTAAAA
Found at i:10084943 original size:17 final size:17
Alignment explanation
Indices: 10084921--10084983 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
10084911 TTGAAATAAA
10084921 AATAATTTAATAATTTT
1 AATAATTTAATAATTTT
* *
10084938 AATAATCTATTAATTTT
1 AATAATTTAATAATTTT
*
10084955 -ATAAATATTAAATAATTTA
1 AAT-AAT-TT-AATAATTTT
*
10084974 AACAATTTAA
1 AATAATTTAA
10084984 ATTAATATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
16 2 0.06
17 20 0.56
18 3 0.08
19 10 0.28
20 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
AATAATTTAATAATTTT
Found at i:10086848 original size:31 final size:32
Alignment explanation
Indices: 10086813--10086891 Score: 115
Period size: 32 Copynumber: 2.5 Consensus size: 32
10086803 TATAAATGAA
*
10086813 ATCAAATGAAATCCAA-GTGCATTAATATTTT
1 ATCAAATGAAATCAAACGTGCATTAATATTTT
* *
10086844 ATCAAATGAAATTAAACGTGCATTAGTATTTT
1 ATCAAATGAAATCAAACGTGCATTAATATTTT
*
10086876 ACCAAATGAAATCAAA
1 ATCAAATGAAATCAAA
10086892 TGAAATCATA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 14 0.33
32 28 0.67
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.32
Consensus pattern (32 bp):
ATCAAATGAAATCAAACGTGCATTAATATTTT
Found at i:10087542 original size:21 final size:20
Alignment explanation
Indices: 10087518--10087556 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
10087508 ACAAAAAAAT
*
10087518 TCAACATGAATTAATATTTTA
1 TCAA-ATGAAATAATATTTTA
*
10087539 TCAAATGAAATCATATTT
1 TCAAATGAAATAATATTT
10087557 AATTAAGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (20 bp):
TCAAATGAAATAATATTTTA
Found at i:10089137 original size:188 final size:185
Alignment explanation
Indices: 10088780--10089146 Score: 429
Period size: 188 Copynumber: 2.0 Consensus size: 185
10088770 TTTTCAGAAA
* * * *
10088780 GAAAATAATATGATAATTATTTTTTATTGAAATTTCATTTAAATTCTTTCACAATTTGGGACAAA
1 GAAAATAATAT-ATAATTATTTGTTATTGAAATTTCATCTAAATTATTCCACAATTTGGGACAAA
* * * *
10088845 TTTAAAGAAATTTCTCACCTAGAGATTTCTTAAAAATTTACCATTTGAAATTTCTAAGAATCTCA
65 TTTAAAAAAATTTCTCACCTAGAAATTTCATAAAAATTTACCATTTGAAATTTCTAAAAATCTCA
* * * * *
10088910 TCCTTGGATAATTGTCAAATATTTTCAACCAAAATTTTATTTTTTATTTTTTTGAGT
130 TCATTGGATAATTATCAAATATTCTCAACAAAAATTTTA-TTCTTATTTTTTTGAGT
* * *
10088967 GAAAATAA-ATATTAATTA-TTGTTATTGGAATTTTATCTAAATTATTCCATAATTTGGGACAAA
1 GAAAATAATATA-TAATTATTTGTTATTGAAATTTCATCTAAATTATTCCACAATTTGGGACAAA
* *
10089030 TTTAGAAAAAAAATTTCTCACCTAGAAAATTT-ATAGAAATTTACCATTTGAAATTTTTAAAAAT
65 TTT---AAAAAAATTTCTCACCTAG-AAATTTCATAAAAATTTACCATTTGAAATTTCTAAAAAT
* **
10089094 TTCATCATTGGATAATTAAT-ATTTATTCTCAA-AAAATATTTTATTCTTATTTT
126 CTCATCATTGGATAATT-ATCAAATATTCTCAACAAAA-ATTTTATTCTTATTTT
10089147 ATACTTTTTT
Statistics
Matches: 152, Mismatches: 21, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
185 42 0.28
186 8 0.05
187 20 0.13
188 76 0.50
189 6 0.04
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (185 bp):
GAAAATAATATATAATTATTTGTTATTGAAATTTCATCTAAATTATTCCACAATTTGGGACAAAT
TTAAAAAAATTTCTCACCTAGAAATTTCATAAAAATTTACCATTTGAAATTTCTAAAAATCTCAT
CATTGGATAATTATCAAATATTCTCAACAAAAATTTTATTCTTATTTTTTTGAGT
Found at i:10090090 original size:4 final size:4
Alignment explanation
Indices: 10090075--10090136 Score: 54
Period size: 4 Copynumber: 14.5 Consensus size: 4
10090065 ATAATCCAAT
* *
10090075 AATA AA-A AATA AATA AATGA GATAA AATA AATA AATA AATAA AATA GATAA
1 AATA AATA AATA AATA AAT-A AAT-A AATA AATA AATA AAT-A AATA AAT-A
10090126 AATAA AATA AA
1 AAT-A AATA AA
10090137 ATAACATATA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
3 3 0.06
4 28 0.57
5 18 0.37
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:10090112 original size:26 final size:26
Alignment explanation
Indices: 10090075--10090136 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 26
10090065 ATAATCCAAT
10090075 AATAAA-AAATAAAT-AAATGAGATAA
1 AATAAATAAATAAATAAAAT-AGATAA
10090100 AATAAATAAATAAATAAAATAGATAA
1 AATAAATAAATAAATAAAATAGATAA
10090126 AATAAAATAAA
1 AAT-AAATAAA
10090137 ATAACATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
25 6 0.18
26 17 0.50
27 11 0.32
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (26 bp):
AATAAATAAATAAATAAAATAGATAA
Found at i:10090119 original size:5 final size:5
Alignment explanation
Indices: 10090096--10090154 Score: 63
Period size: 5 Copynumber: 12.2 Consensus size: 5
10090086 AATAAATGAG
*
10090096 ATAAA AT-AA AT-AA AT-AA ATAAA AT-AG ATAAA ATAAA ATAAA ATAACA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAA-A
10090143 TATAAA ATAAA A
1 -ATAAA ATAAA A
10090155 ATAGAAATGG
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
4 15 0.31
5 27 0.56
6 2 0.04
7 4 0.08
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:10090128 original size:22 final size:21
Alignment explanation
Indices: 10090075--10090153 Score: 72
Period size: 22 Copynumber: 3.7 Consensus size: 21
10090065 ATAATCCAAT
*
10090075 AATAA-AAAATAAATAAATGA
1 AATAATAAAATAAATAAATAA
* *
10090095 GATAAAATAAATAAATAAATAA
1 AATAATA-AAATAAATAAATAA
10090117 AATAGATAAAATAAAATAAAATAA
1 AATA-ATAAAAT-AAAT-AAATAA
*
10090141 CAT-ATAAAATAAA
1 AATAATAAAATAAA
10090154 AATAGAAATG
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
20 4 0.08
21 4 0.08
22 27 0.55
23 6 0.12
24 8 0.16
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.22
Consensus pattern (21 bp):
AATAATAAAATAAATAAATAA
Found at i:10090492 original size:43 final size:43
Alignment explanation
Indices: 10090432--10090668 Score: 202
Period size: 43 Copynumber: 5.6 Consensus size: 43
10090422 CTTCCCTAGG
*
10090432 CAGAGACTC-ACAACTTTGGAAAATAAATAAAGCTCCTTTAAA
1 CAGAGGCTCAACAACTTTGGAAAATAAATAAAGCTCCTTTAAA
* ** * * *
10090474 CAAAGGCTCAATGACTTTGGAAAATAAATAATGCTCATCTAAA
1 CAGAGGCTCAACAACTTTGGAAAATAAATAAAGCTCCTTTAAA
* *
10090517 CAGAGGCTCAGCAACTTT-G--AA-AAATAAAGGCT-CTTCTAAT
1 CAGAGGCTCAACAACTTTGGAAAATAAATAAA-GCTCCTT-TAAA
* * * * *
10090557 TAGAGGCTCAACAACTTTGAAAAATAAATAATGCTCTTTTAAG
1 CAGAGGCTCAACAACTTTGGAAAATAAATAAAGCTCCTTTAAA
* * * * *
10090600 CAGAGGCTCAACAAC-TTGAAAAAATAAACAAGGCTCCTCTAAG
1 CAGAGGCTCAACAACTTTG-GAAAATAAATAAAGCTCCTTTAAA
* *
10090643 CAAAGGCTTAACAACTTT-GAAAATAA
1 CAGAGGCTCAACAACTTTGGAAAATAA
10090669 GCAGAGGCTC
Statistics
Matches: 156, Mismatches: 29, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
39 7 0.04
40 24 0.15
42 18 0.12
43 97 0.62
44 10 0.06
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.24
Consensus pattern (43 bp):
CAGAGGCTCAACAACTTTGGAAAATAAATAAAGCTCCTTTAAA
Found at i:10090581 original size:83 final size:85
Alignment explanation
Indices: 10090463--10090665 Score: 241
Period size: 83 Copynumber: 2.4 Consensus size: 85
10090453 AATAAATAAA
* * ** * *
10090463 GCTCCTTTAAACAAAGGCTCAATGACTTTGGAAAATAAATAATGCTCATCTAAACAGAGGCTCAG
1 GCTCCTCTAAGCAAAGGCTCAACAACTTTGAAAAATAAATAATGCTCATCTAAACAGAGGCTCAA
10090528 CAACTTTG-AAAAAT-A-AAG
66 CAAC-TTGAAAAAATAACAAG
* ** * * * *
10090546 GCTCTTCTAATTAGAGGCTCAACAACTTTGAAAAATAAATAATGCTCTTTTAAGCAGAGGCTCAA
1 GCTCCTCTAAGCAAAGGCTCAACAACTTTGAAAAATAAATAATGCTCATCTAAACAGAGGCTCAA
10090611 CAACTTGAAAAAATAAACAAG
66 CAACTTGAAAAAAT-AACAAG
*
10090632 GCTCCTCTAAGCAAAGGCTTAACAACTTTGAAAA
1 GCTCCTCTAAGCAAAGGCTCAACAACTTTGAAAA
10090666 TAAGCAGAGG
Statistics
Matches: 99, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
82 3 0.03
83 63 0.64
85 1 0.01
86 32 0.32
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.25
Consensus pattern (85 bp):
GCTCCTCTAAGCAAAGGCTCAACAACTTTGAAAAATAAATAATGCTCATCTAAACAGAGGCTCAA
CAACTTGAAAAAATAACAAG
Found at i:10090670 original size:27 final size:27
Alignment explanation
Indices: 10090639--10090705 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
10090629 AAGGCTCCTC
*
10090639 TAAGCAAAGGCTTAACAACTTTGAAAA
1 TAAGCAAAGGCTCAACAACTTTGAAAA
*
10090666 TAAGCAGAGGCTCAACAACTTTGAAAAA
1 TAAGCAAAGGCTCAACAACTTTG-AAAA
*
10090694 TAAAC-AAGGCTC
1 TAAGCAAAGGCTC
10090706 CTCTAATCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 27 0.77
28 8 0.23
ACGTcount: A:0.46, C:0.18, G:0.16, T:0.19
Consensus pattern (27 bp):
TAAGCAAAGGCTCAACAACTTTGAAAA
Found at i:10090717 original size:43 final size:43
Alignment explanation
Indices: 10090670--10090919 Score: 217
Period size: 43 Copynumber: 6.0 Consensus size: 43
10090660 TGAAAATAAG
*
10090670 CAGAGGCTCAACAACTTTGAAAAATAAACAAGGCTCCTCTAAT
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAT
* * * * * *
10090713 CAGAGGTTCAACAATTTTAAAAAATAAATAAAGCTTCTCTAAG
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAT
* * * ** *
10090756 CATAGACTCAATAACTTTGAAAAAT--A-AAGGCTTATTTAAT
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAT
* * ** *
10090796 CAGAGGCTCAACAAC-TTCAGAAATAAATAATACTCATCTAAT
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAT
* * * * * *
10090838 CAAAGGCTCCATAACTTTGAAAAATAAATAATGCTCTTCTAAA
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAT
* *
10090881 CAGAGGCTTAACCACTTTGAAAAAT--A-AAGGCTCCTCTAA
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAA
10090920 AATCATGTCC
Statistics
Matches: 162, Mismatches: 41, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
39 7 0.04
40 33 0.20
41 3 0.02
42 22 0.14
43 97 0.60
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.26
Consensus pattern (43 bp):
CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAT
Found at i:10090726 original size:70 final size:70
Alignment explanation
Indices: 10090596--10090735 Score: 212
Period size: 70 Copynumber: 2.0 Consensus size: 70
10090586 AATGCTCTTT
10090596 TAAGCAGAGGCTCAACAACTTGAAAAAATAAACAAGGCTCCTCTAAGCAAAGGCTTAACAACTTT
1 TAAGCAGAGGCTCAACAACTTGAAAAAATAAACAAGGCTCCTCTAAGCAAAGGCTTAACAACTTT
*
10090661 GAAAA
66 AAAAA
* * *
10090666 TAAGCAGAGGCTCAACAACTTTG-AAAAATAAACAAGGCTCCTCTAATCAGAGG-TTCAACAATT
1 TAAGCAGAGGCTCAACAAC-TTGAAAAAATAAACAAGGCTCCTCTAAGCAAAGGCTT-AACAACT
10090729 TTAAAAA
64 TTAAAAA
10090736 ATAAATAAAG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
69 2 0.03
70 59 0.92
71 3 0.05
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.21
Consensus pattern (70 bp):
TAAGCAGAGGCTCAACAACTTGAAAAAATAAACAAGGCTCCTCTAAGCAAAGGCTTAACAACTTT
AAAAA
Found at i:10090756 original size:113 final size:113
Alignment explanation
Indices: 10090558--10090778 Score: 307
Period size: 113 Copynumber: 2.0 Consensus size: 113
10090548 TCTTCTAATT
* * * *
10090558 AGAGGCTCAACAACTTTGAAAAATAAATAATGCTCTTTTAAGCAGAGGCTCAACAACTTGAAAAA
1 AGAGGCTCAACAACTTTGAAAAATAAACAAGGCTCCTCTAAGCAGAGGCTCAACAACTTGAAAAA
* * *
10090623 ATAAACAAGGCTCCTCTAAGCAAAGGCTTAACAACTTTGAAAATAAGC
66 ATAAACAAAGCTCCTCTAAGCAAAGACTCAACAACTTTGAAAATAAGC
* * * *
10090671 AGAGGCTCAACAACTTTGAAAAATAAACAAGGCTCCTCTAATCAGAGGTTCAACAATTTTAAAAA
1 AGAGGCTCAACAACTTTGAAAAATAAACAAGGCTCCTCTAAGCAGAGGCTCAACAACTTGAAAAA
* * * *
10090736 ATAAATAAAGCTTCTCTAAGCATAGACTCAATAACTTTGAAAA
66 ATAAACAAAGCTCCTCTAAGCAAAGACTCAACAACTTTGAAAA
10090779 ATAAAGGCTT
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
113 93 1.00
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.24
Consensus pattern (113 bp):
AGAGGCTCAACAACTTTGAAAAATAAACAAGGCTCCTCTAAGCAGAGGCTCAACAACTTGAAAAA
ATAAACAAAGCTCCTCTAAGCAAAGACTCAACAACTTTGAAAATAAGC
Found at i:10090855 original size:82 final size:83
Alignment explanation
Indices: 10090666--10090865 Score: 217
Period size: 82 Copynumber: 2.4 Consensus size: 83
10090656 ACTTTGAAAA
* * * * *
10090666 TAAGCAGAGGCTCAACAACTTTGAAAAATAAACAAGGCTCCTCTAATCAGAGGTTCAACAATTTT
1 TAAGCAAAGGCTCAATAACTTTGAAAAAT--A-AAGGCTCATCTAATCAGAGGCTCAACAATCTT
10090731 AAAAAATAAATAAAGCTTCTC
63 AAAAAATAAATAAAGCTTCTC
* * * * * *
10090752 TAAGCATAGACTCAATAACTTTGAAAAATAAAGGCTTATTTAATCAGAGGCTCAACAA-CTTCAG
1 TAAGCAAAGGCTCAATAACTTTGAAAAATAAAGGCTCATCTAATCAGAGGCTCAACAATCTTAAA
10090816 AAATAAATAATA-C-TCATC
66 AAATAAATAA-AGCTTC-TC
* *
10090834 TAATCAAAGGCTCCATAACTTTGAAAAATAAA
1 TAAGCAAAGGCTCAATAACTTTGAAAAATAAA
10090866 TAATGCTCTT
Statistics
Matches: 98, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
81 2 0.02
82 44 0.45
83 25 0.26
84 1 0.01
86 26 0.27
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.26
Consensus pattern (83 bp):
TAAGCAAAGGCTCAATAACTTTGAAAAATAAAGGCTCATCTAATCAGAGGCTCAACAATCTTAAA
AAATAAATAAAGCTTCTC
Found at i:10090898 original size:125 final size:126
Alignment explanation
Indices: 10090670--10090912 Score: 292
Period size: 125 Copynumber: 1.9 Consensus size: 126
10090660 TGAAAATAAG
* * * * * *
10090670 CAGAGGCTCAACAACTTTGAAAAATAAACAAGGCTCCTCTAATCAGAGGTTCAACAATTTTAAAA
1 CAGAGGCTCAACAACTTTCAAAAATAAACAAGACTCATCTAATCAAAGGCTCAACAACTTTAAAA
* * *
10090735 AATAAATAAAGCTTCTCTAAGCATAGACTCAATAACTTTGAAAAATAAAGGCTTATTTAAT
66 AATAAATAAAGCTTCTCTAAACAGAGACTCAACAACTTTGAAAAATAAAGGCTTATTTAAT
* * * * * *
10090796 CAGAGGCTCAACAAC-TTCAGAAATAAATAATACTCATCTAATCAAAGGCTCCATAACTTTGAAA
1 CAGAGGCTCAACAACTTTCAAAAATAAACAAGACTCATCTAATCAAAGGCTCAACAACTTTAAAA
* * * *
10090860 AATAAATAATGC-TCTTCTAAACAGAGGCTTAACCACTTTGAAAAATAAAGGCT
66 AATAAATAAAGCTTC-TCTAAACAGAGACTCAACAACTTTGAAAAATAAAGGCT
10090913 CCTCTAAAAT
Statistics
Matches: 97, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
124 2 0.02
125 80 0.82
126 15 0.15
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (126 bp):
CAGAGGCTCAACAACTTTCAAAAATAAACAAGACTCATCTAATCAAAGGCTCAACAACTTTAAAA
AATAAATAAAGCTTCTCTAAACAGAGACTCAACAACTTTGAAAAATAAAGGCTTATTTAAT
Found at i:10090907 original size:239 final size:238
Alignment explanation
Indices: 10090431--10090903 Score: 558
Period size: 239 Copynumber: 2.0 Consensus size: 238
10090421 ACTTCCCTAG
* * * ** **
10090431 GCAGAGACTCACAACTTTGGAAAATAAATAAAGCTCCTTTAAACAAAGGCTCAATGACTTTGGAA
1 GCAGAGACTCACAACTTTGAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACAACTTTAAAA
* * * *
10090496 AATAAATAATGCTCATCTAAACAGAGGCTCAGCAACTTTGAAAAATAAAGGCTCTTCTAATTAGA
66 AATAAATAAAGCTCATCTAAACAGAGACTCAACAACTTTGAAAAATAAAGGCTCTTCTAATCAGA
* * * * *
10090561 GGCTCAACAACTTTGAAAAATAAATAATGCTCTTTTAAGCAGAGGCTCAACAACTTGAAAAAATA
131 GGCTCAACAACTTTCAAAAATAAATAATACTCATCTAAGCAAAGGCTCAACAACTTGAAAAAATA
*
10090626 AACAAGGCTCCTCTAAGCAAAGGCTTAACAACTTTGAAAATAA
196 AACAAGGCTCCTCTAAACAAAGGCTTAACAACTTTGAAAATAA
* * * * * *
10090669 GCAGAGGCTCAACAACTTTGAAAAATAAACAAGGCTCCTCTAATCAGAGGTTCAACAATTTTAAA
1 GCAGAGACTC-ACAACTTTGAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACAACTTTAAA
* * * *
10090734 AAATAAATAAAGCTTC-TCTAAGCATAGACTCAATAACTTTGAAAAATAAAGGCT-TATTTAATC
65 AAATAAATAAAGC-TCATCTAAACAGAGACTCAACAACTTTGAAAAATAAAGGCTCT-TCTAATC
* * * *
10090797 AGAGGCTCAACAAC-TTCAGAAATAAATAATACTCATCTAATCAAAGGCTCCATAACTTTG-AAA
128 AGAGGCTCAACAACTTTCAAAAATAAATAATACTCATCTAAGCAAAGGCTCAACAAC-TTGAAAA
* * * * *
10090860 AATAAATAATGCTCTTCTAAACAGAGGCTTAACCACTTTGAAAA
192 AATAAACAAGGCTCCTCTAAACAAAGGCTTAACAACTTTGAAAA
10090904 ATAAAGGCTC
Statistics
Matches: 195, Mismatches: 36, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
238 84 0.43
239 109 0.56
240 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.13, T:0.25
Consensus pattern (238 bp):
GCAGAGACTCACAACTTTGAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACAACTTTAAAA
AATAAATAAAGCTCATCTAAACAGAGACTCAACAACTTTGAAAAATAAAGGCTCTTCTAATCAGA
GGCTCAACAACTTTCAAAAATAAATAATACTCATCTAAGCAAAGGCTCAACAACTTGAAAAAATA
AACAAGGCTCCTCTAAACAAAGGCTTAACAACTTTGAAAATAA
Found at i:10091242 original size:21 final size:21
Alignment explanation
Indices: 10091200--10091242 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
10091190 ACATTTGAAG
*
10091200 ATTCGAATTCTGGAGATCCAC
1 ATTCGAATTATGGAGATCCAC
* *
10091221 ATTCGAATTATGGTGATTCAC
1 ATTCGAATTATGGAGATCCAC
10091242 A
1 A
10091243 CCCAAAAGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (21 bp):
ATTCGAATTATGGAGATCCAC
Found at i:10091532 original size:21 final size:21
Alignment explanation
Indices: 10091508--10091618 Score: 105
Period size: 21 Copynumber: 4.9 Consensus size: 21
10091498 GGTTTCACAC
10091508 CTCAAAGATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
*
10091529 CTCAAAACTCAAATATTCTCATTTGAAAA
1 CTC--AA---AGAT--TCTCATTTG-AAA
10091558 CTCAAAGATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
* *
10091579 TTCAAAGATTCACATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
* *
10091600 TTTAAAGATTCTCATTTGA
1 CTCAAAGATTCTCATTTGA
10091619 GGATTCACAA
Statistics
Matches: 76, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
21 42 0.55
22 9 0.12
23 2 0.03
24 3 0.04
26 3 0.04
27 2 0.03
28 9 0.12
29 6 0.08
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTGAAA
Found at i:10091548 original size:28 final size:29
Alignment explanation
Indices: 10091508--10091563 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
10091498 GGTTTCACAC
10091508 CTCAAAGATTCTCATTTG-AAACTCAAAA
1 CTCAAAGATTCTCATTTGAAAACTCAAAA
*
10091536 CTCAAATATTCTCATTTGAAAACTCAAA
1 CTCAAAGATTCTCATTTGAAAACTCAAA
10091564 GATTCTCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.30
Consensus pattern (29 bp):
CTCAAAGATTCTCATTTGAAAACTCAAAA
Found at i:10091560 original size:22 final size:22
Alignment explanation
Indices: 10091532--10091618 Score: 115
Period size: 21 Copynumber: 4.0 Consensus size: 22
10091522 TTTGAAACTC
*
10091532 AAAACTCAAATATTCTCATTTG
1 AAAACTCAAAGATTCTCATTTG
10091554 AAAACTCAAAGATTCTCATTTG
1 AAAACTCAAAGATTCTCATTTG
* *
10091576 -AAATTCAAAGATTCACATTTG
1 AAAACTCAAAGATTCTCATTTG
* *
10091597 -AAATTTAAAGATTCTCATTTG
1 AAAACTCAAAGATTCTCATTTG
10091618 A
1 A
10091619 GGATTCACAA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 38 0.64
22 21 0.36
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (22 bp):
AAAACTCAAAGATTCTCATTTG
Found at i:10092702 original size:19 final size:19
Alignment explanation
Indices: 10092656--10092716 Score: 77
Period size: 19 Copynumber: 2.9 Consensus size: 19
10092646 ATTTTCTCAT
10092656 TTTTTTTTCTTCTATTTCTTTC
1 TTTTTTTTCTT-T-TTT-TTTC
10092678 TTTTTTTTCTTTTTTTTTC
1 TTTTTTTTCTTTTTTTTTC
10092697 TTTTTTTTCAATTTTTTTTT
1 TTTTTTTTC--TTTTTTTTT
10092717 ATCCATTAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
19 13 0.35
20 3 0.08
21 10 0.27
22 11 0.30
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTTTTCTTTTTTTTTC
Found at i:10092711 original size:11 final size:9
Alignment explanation
Indices: 10092658--10092715 Score: 62
Period size: 9 Copynumber: 5.9 Consensus size: 9
10092648 TTTCTCATTT
10092658 TTTTTTCTTC
1 TTTTTT-TTC
*
10092668 TATTTCTTTC
1 T-TTTTTTTC
10092678 TTTTTTTTC
1 TTTTTTTTC
10092687 TTTTTTTTTC
1 -TTTTTTTTC
10092697 TTTTTTTTC
1 TTTTTTTTC
10092706 AATTTTTTTT
1 --TTTTTTTT
10092716 TATCCATTAG
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
9 16 0.38
10 14 0.33
11 12 0.29
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:10092714 original size:32 final size:32
Alignment explanation
Indices: 10092612--10092716 Score: 86
Period size: 32 Copynumber: 3.1 Consensus size: 32
10092602 TTGAGTCTTC
* * *
10092612 TTTTTCTCTCTTTTTTATTTTTTTCCAATCTTTCAT
1 TTTTTCT-TTTTTTTTCTTTTTTTTCAAT-TTT--T
* * * *
10092648 TTTCTCATTTTTTTTTCTTCTATTTC-TTTCTTT
1 TTTTTC-TTTTTTTTTCTTTTTTTTCAATT-TTT
10092681 TTTTTCTTTTTTTTTCTTTTTTTTCAATTTTT
1 TTTTTCTTTTTTTTTCTTTTTTTTCAATTTTT
10092713 TTTT
1 TTTT
10092717 ATCCATTAGT
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
32 24 0.44
33 8 0.15
34 1 0.02
35 3 0.05
36 18 0.33
37 1 0.02
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (32 bp):
TTTTTCTTTTTTTTTCTTTTTTTTCAATTTTT
Found at i:10093111 original size:7 final size:7
Alignment explanation
Indices: 10093073--10093102 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
10093063 ATGTATGGCA
10093073 TTCATTT
1 TTCATTT
10093080 TTCATTT
1 TTCATTT
10093087 TTCATTT
1 TTCATTT
10093094 TTCATTT
1 TTCATTT
10093101 TT
1 TT
10093103 TTCATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (7 bp):
TTCATTT
Found at i:10093115 original size:14 final size:14
Alignment explanation
Indices: 10093073--10093115 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
10093063 ATGTATGGCA
**
10093073 TTCATTTTTCATTT
1 TTCATTTTTTTTTT
10093087 TTCATTTTTCATTTTT
1 TTCATTTTT--TTTTT
10093103 TTCATTTTTTTTT
1 TTCATTTTTTTTT
10093116 CTTCTCTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 13 0.52
16 12 0.48
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (14 bp):
TTCATTTTTTTTTT
Found at i:10097263 original size:186 final size:185
Alignment explanation
Indices: 10096909--10097264 Score: 454
Period size: 186 Copynumber: 1.9 Consensus size: 185
10096899 TTTTCAGAAA
* * * * *
10096909 GAAAATAATAAGATAATTATTTTTTATTGAAATTTCATTTAAATTCTTTCACTATTTGGGACAAA
1 GAAAATAATAAGATAATTATTTGTTATTGAAATTTCATCTAAATTATTCCACCATTTGGGACAAA
* * * * *
10096974 TTTAAGAAATTTCTCACCTACAGATTTTTTAGGAATTTACCATTTGAAATTTCTAAAAATTTCAT
66 TTTAAAAAATTTCTCACCTACAGAATTTATAGAAATTTACCATTTAAAATTTCTAAAAATTTCAT
* * *
10097039 CATTGGATAATTGTCAAATATTTTCAACCAAAATTTTATTTTTCATTTTTTGATT
131 CATTGGATAATTATCAAATATTCTCAACAAAAATTTTATTTTTCATTTTTTGATT
*
10097094 GAAAATAA-ATAG-TAATTA-TTGTTATTGAAATTTTATCTAAATTATTCCACCATTTGGGACAA
1 GAAAATAATA-AGATAATTATTTGTTATTGAAATTTCATCTAAATTATTCCACCATTTGGGACAA
*
10097156 ATTTAGAAAAAAATTTCTCACCTA-GGAAATTTATAGAAATTTACCATTTAAAATTTCTAAAAAT
65 ATTT---AAAAAATTTCTCACCTACAG-AATTTATAGAAATTTACCATTTAAAATTTCTAAAAAT
**
10097220 TTCATCATTGGATAATTAAT-ATTTATTCTCAA-AAAACATTTTATT
126 TTCATCATTGGATAATT-ATCAAATATTCTCAACAAAA-ATTTTATT
10097265 CTTGTTTTAT
Statistics
Matches: 147, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
183 42 0.29
184 7 0.05
185 14 0.10
186 83 0.56
187 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.43
Consensus pattern (185 bp):
GAAAATAATAAGATAATTATTTGTTATTGAAATTTCATCTAAATTATTCCACCATTTGGGACAAA
TTTAAAAAATTTCTCACCTACAGAATTTATAGAAATTTACCATTTAAAATTTCTAAAAATTTCAT
CATTGGATAATTATCAAATATTCTCAACAAAAATTTTATTTTTCATTTTTTGATT
Found at i:10097365 original size:23 final size:23
Alignment explanation
Indices: 10097329--10097407 Score: 101
Period size: 23 Copynumber: 3.5 Consensus size: 23
10097319 TCAAAAAAAG
10097329 TAAATAAAATAAAATGACATTTAT
1 TAAAT-AAATAAAATGACATTTAT
*
10097353 TAAATAAATAAAAAGACATTTA-
1 TAAATAAATAAAATGACATTTAT
* *
10097375 TAAAT-AA-AAAATGGCTTTTAT
1 TAAATAAATAAAATGACATTTAT
10097396 TAAATAAATAAA
1 TAAATAAATAAA
10097408 TATTTTTAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
20 10 0.21
21 7 0.15
22 7 0.15
23 19 0.40
24 5 0.10
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (23 bp):
TAAATAAATAAAATGACATTTAT
Found at i:10097656 original size:17 final size:17
Alignment explanation
Indices: 10097634--10097667 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10097624 TTGGCAGGAG
*
10097634 GAATAGAAAGAGTGAAA
1 GAATAGAAAGAGAGAAA
*
10097651 GAATAGGAAGAGAGAAA
1 GAATAGAAAGAGAGAAA
10097668 AAAAAAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.32, T:0.09
Consensus pattern (17 bp):
GAATAGAAAGAGAGAAA
Found at i:10101044 original size:10 final size:10
Alignment explanation
Indices: 10101029--10101063 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
10101019 ACGCTCACCA
10101029 ACCTACAGCC
1 ACCTACAGCC
10101039 ACCTACAGCC
1 ACCTACAGCC
*
10101049 ACCCTACAACC
1 A-CCTACAGCC
10101060 ACCT
1 ACCT
10101064 TGGAGTTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.31, C:0.51, G:0.06, T:0.11
Consensus pattern (10 bp):
ACCTACAGCC
Found at i:10101056 original size:11 final size:11
Alignment explanation
Indices: 10101030--10101062 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
10101020 CGCTCACCAA
10101030 CCTACAGCCA-
1 CCTACAGCCAC
10101040 CCTACAGCCAC
1 CCTACAGCCAC
*
10101051 CCTACAACCAC
1 CCTACAGCCAC
10101062 C
1 C
10101063 TTGGAGTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.30, C:0.55, G:0.06, T:0.09
Consensus pattern (11 bp):
CCTACAGCCAC
Found at i:10101286 original size:12 final size:11
Alignment explanation
Indices: 10101254--10101298 Score: 54
Period size: 12 Copynumber: 3.9 Consensus size: 11
10101244 AACAAAAAAA
10101254 AAAAAAAACAC
1 AAAAAAAACAC
* *
10101265 AAACAGAAACGC
1 AAA-AAAAACAC
10101277 AAAAACAAACAC
1 AAAAA-AAACAC
10101289 AAAAAAAACA
1 AAAAAAAACA
10101299 AACATAGTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 9 0.32
12 19 0.68
ACGTcount: A:0.76, C:0.20, G:0.04, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAC
Found at i:10102454 original size:16 final size:16
Alignment explanation
Indices: 10102367--10102454 Score: 106
Period size: 16 Copynumber: 5.4 Consensus size: 16
10102357 TTAAGTTTCT
*
10102367 AAACCCTTAAAATCCA
1 AAACCCCTAAAATCCA
10102383 AAACCCCCTAAAAATCCA
1 AAA-CCCCT-AAAATCCA
* *
10102401 AAATCCCTTAAATCC-
1 AAACCCCTAAAATCCA
* *
10102416 AAACCCCTAAAATTCG
1 AAACCCCTAAAATCCA
10102432 AAACCCCTAAAATCCA
1 AAACCCCTAAAATCCA
10102448 AAACCCC
1 AAACCCC
10102455 CCAAAATCCG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
15 12 0.20
16 30 0.49
17 8 0.13
18 11 0.18
ACGTcount: A:0.47, C:0.36, G:0.01, T:0.16
Consensus pattern (16 bp):
AAACCCCTAAAATCCA
Found at i:10106998 original size:77 final size:77
Alignment explanation
Indices: 10106905--10107059 Score: 310
Period size: 77 Copynumber: 2.0 Consensus size: 77
10106895 CCTGTAAGCA
10106905 AACTCTCAAGCAACTGGCAGATCAACACCAAAACTAACATTCATAATTTGGGCAAGATTTAGGTT
1 AACTCTCAAGCAACTGGCAGATCAACACCAAAACTAACATTCATAATTTGGGCAAGATTTAGGTT
10106970 GAGATGTGTTTT
66 GAGATGTGTTTT
10106982 AACTCTCAAGCAACTGGCAGATCAACACCAAAACTAACATTCATAATTTGGGCAAGATTTAGGTT
1 AACTCTCAAGCAACTGGCAGATCAACACCAAAACTAACATTCATAATTTGGGCAAGATTTAGGTT
10107047 GAGATGTGTTTT
66 GAGATGTGTTTT
10107059 A
1 A
10107060 GATTTTTATT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (77 bp):
AACTCTCAAGCAACTGGCAGATCAACACCAAAACTAACATTCATAATTTGGGCAAGATTTAGGTT
GAGATGTGTTTT
Found at i:10111370 original size:24 final size:24
Alignment explanation
Indices: 10111338--10111383 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
10111328 ATCCACTAAA
10111338 CAACTATAAAGAAGTGCCAACAGC
1 CAACTATAAAGAAGTGCCAACAGC
10111362 CAACTATAAAGAAGTGCCAACA
1 CAACTATAAAGAAGTGCCAACA
10111384 ACCATAAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.48, C:0.24, G:0.15, T:0.13
Consensus pattern (24 bp):
CAACTATAAAGAAGTGCCAACAGC
Found at i:10111390 original size:20 final size:21
Alignment explanation
Indices: 10111335--10111392 Score: 73
Period size: 24 Copynumber: 2.7 Consensus size: 21
10111325 ACCATCCACT
10111335 AAACAACTATAAAGAAGTGCC
1 AAACAACTATAAAGAAGTGCC
10111356 AACAGCCAACTATAAAGAAGTGCC
1 AA-A--CAACTATAAAGAAGTGCC
*
10111380 -AACAACCATAAAG
1 AAACAACTATAAAG
10111393 CAGATATCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
20 10 0.30
21 2 0.06
22 2 0.06
23 1 0.03
24 18 0.55
ACGTcount: A:0.52, C:0.22, G:0.14, T:0.12
Consensus pattern (21 bp):
AAACAACTATAAAGAAGTGCC
Found at i:10123208 original size:17 final size:17
Alignment explanation
Indices: 10123182--10123217 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
10123172 AAATGTTTCA
*
10123182 TATATATATATATATAT
1 TATATATATAAATATAT
*
10123199 TATATTTATAAATATAT
1 TATATATATAAATATAT
10123216 TA
1 TA
10123218 AAAATCAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATATATAAATATAT
Found at i:10129044 original size:20 final size:21
Alignment explanation
Indices: 10129008--10129059 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
10128998 ACCGAAATTA
10129008 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTA-TTTTTAAAAT
*
10129030 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTAAAAT
10129051 AT-AAATATT
1 ATAAAATATT
10129060 TAAAAATATC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 7 0.24
21 11 0.38
22 11 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAAAATATTATTTTTAAAAT
Found at i:10129050 original size:21 final size:22
Alignment explanation
Indices: 10129008--10129059 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
10128998 ACCGAAATTA
10129008 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTTAAAAT
10129030 ATAAAATATTATTTTTT-AAAT
1 ATAAAATATTATTTTTTAAAAT
10129051 AT-AAATATT
1 ATAAAATATT
10129060 TAAAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 7 0.23
21 6 0.20
22 17 0.57
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAAAATATTATTTTTTAAAAT
Found at i:10129095 original size:30 final size:30
Alignment explanation
Indices: 10129027--10129096 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
10129017 TATTTTTTAA
* * * *
10129027 AATATAAAATATTATTTTTTAAATATAAAT
1 AATAAAAAATATCATTATATAAATATAAAT
* * *
10129057 ATTTAAAAATATCATTATATAAATATATAT
1 AATAAAAAATATCATTATATAAATATAAAT
10129087 AATAAAAAAT
1 AATAAAAAAT
10129097 TAAATAATTA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (30 bp):
AATAAAAAATATCATTATATAAATATAAAT
Found at i:10129113 original size:19 final size:21
Alignment explanation
Indices: 10129075--10129120 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
10129065 ATATCATTAT
10129075 ATAAATATATATAATAAAAAA
1 ATAAATATATATAATAAAAAA
* *
10129096 TTAAATA-AT-TAATTAAAAA
1 ATAAATATATATAATAAAAAA
10129115 ATAAAT
1 ATAAAT
10129121 TTTTTTATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 14 0.64
20 2 0.09
21 6 0.27
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAAATATATATAATAAAAAA
Found at i:10133796 original size:16 final size:15
Alignment explanation
Indices: 10133775--10133804 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10133765 TTATGGTATT
10133775 ACTTAAATATAAAACC
1 ACTTAAATA-AAAACC
10133791 ACTTAAATAAAAAC
1 ACTTAAATAAAAAC
10133805 AAACACCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.17, G:0.00, T:0.23
Consensus pattern (15 bp):
ACTTAAATAAAAACC
Found at i:10145702 original size:20 final size:20
Alignment explanation
Indices: 10145651--10145704 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
10145641 ATTATTCATG
* * *
10145651 ACATCCATAAAATATCTATA
1 ACATCTATAAAACATCAATA
*
10145671 ACAT-TCACAAAACATCAATA
1 ACATCT-ATAAAACATCAATA
10145691 ACATCTATAAAACA
1 ACATCTATAAAACA
10145705 CATCATATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.54, C:0.22, G:0.00, T:0.24
Consensus pattern (20 bp):
ACATCTATAAAACATCAATA
Found at i:10150838 original size:22 final size:22
Alignment explanation
Indices: 10150813--10150867 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
10150803 ATTAAAATTA
*
10150813 ATAACGTGATATTTTAATTTTT
1 ATAACGTGATATTTTAACTTTT
*
10150835 ATAATGTGATATTTTAACTTTT
1 ATAACGTGATATTTTAACTTTT
*
10150857 ATAAGGTGATA
1 ATAACGTGATA
10150868 GTTGATTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (22 bp):
ATAACGTGATATTTTAACTTTT
Found at i:10153265 original size:23 final size:23
Alignment explanation
Indices: 10153239--10153282 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
10153229 CCAAAAGTAT
*
10153239 TTTA-TTTATTATTTGTTATTTTC
1 TTTATTTTATT-TTTATTATTTTC
10153262 TTTATTTTATTTTTATTATTT
1 TTTATTTTATTTTTATTATTT
10153283 AGTTGATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTATTTTATTTTTATTATTTTC
Found at i:10153280 original size:14 final size:14
Alignment explanation
Indices: 10153236--10153282 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
10153226 GATCCAAAAG
10153236 TATTTTATTTATTAT
1 TATTTTATTT-TTAT
*
10153251 T-TGTTATTTTCT-T
1 TATTTTATTTT-TAT
10153264 TATTTTATTTTTAT
1 TATTTTATTTTTAT
10153278 TATTT
1 TATTT
10153283 AGTTGATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
13 4 0.15
14 22 0.81
15 1 0.04
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (14 bp):
TATTTTATTTTTAT
Found at i:10164121 original size:20 final size:19
Alignment explanation
Indices: 10164086--10164125 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
10164076 CCATTTATTA
10164086 ATTAAATCATTGAAATTTT
1 ATTAAATCATTGAAATTTT
10164105 ATTACAATCGATT-AAATTTT
1 ATTA-AATC-ATTGAAATTTT
10164125 A
1 A
10164126 AATTAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 12 0.63
21 3 0.16
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.45
Consensus pattern (19 bp):
ATTAAATCATTGAAATTTT
Found at i:10164898 original size:23 final size:23
Alignment explanation
Indices: 10164867--10164911 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
10164857 AAGTCAATTG
*
10164867 ATTCGTAAAATCATATTTAAAAC
1 ATTCATAAAATCATATTTAAAAC
* *
10164890 ATTCATAAAATTATTTTTAAAA
1 ATTCATAAAATCATATTTAAAA
10164912 TGTTGCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (23 bp):
ATTCATAAAATCATATTTAAAAC
Found at i:10166850 original size:22 final size:21
Alignment explanation
Indices: 10166803--10166853 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
10166793 TTAAAATATG
*
10166803 AATTTTATTCCAAATAATTTT
1 AATTTTATTCCAAATAAATTT
*
10166824 AATTTTTTTACCAAATAACATTT
1 AATTTTATT-CCAAATAA-ATTT
10166847 -ATTTTAT
1 AATTTTAT
10166854 AAATTATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 8 0.32
22 14 0.56
23 3 0.12
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (21 bp):
AATTTTATTCCAAATAAATTT
Found at i:10175853 original size:6 final size:6
Alignment explanation
Indices: 10175842--10175880 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
10175832 TGGGAGCAGC
10175842 GCAGGT GCAGGT GCAGGT GCAGGT G--GGT GCAGGT GCAGG
1 GCAGGT GCAGGT GCAGGT GCAGGT GCAGGT GCAGGT GCAGG
10175881 CTCAGGCTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.13
6 27 0.87
ACGTcount: A:0.15, C:0.15, G:0.54, T:0.15
Consensus pattern (6 bp):
GCAGGT
Found at i:10195638 original size:15 final size:15
Alignment explanation
Indices: 10195592--10195704 Score: 104
Period size: 16 Copynumber: 7.2 Consensus size: 15
10195582 TTAGGTTTCT
10195592 AAAACTCCTAAAATCC
1 AAAA-TCCTAAAATCC
10195608 AAAATCCCTTTAAAATCC
1 AAAAT-CC--TAAAATCC
10195626 AAAATCCTAAAATCC
1 AAAATCCTAAAATCC
* *
10195641 GAAACCCTTAAAATCC
1 AAAATCC-TAAAATCC
* *
10195657 -AAACCCCAAAATCC
1 AAAATCCTAAAATCC
10195671 -AAATCCTTAAAATCC
1 AAAATCC-TAAAATCC
*
10195686 AAAATCCCTAAAATTC
1 AAAAT-CCTAAAATCC
10195702 AAA
1 AAA
10195705 CCCTTAAATC
Statistics
Matches: 84, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
14 12 0.14
15 27 0.32
16 28 0.33
17 4 0.05
18 13 0.15
ACGTcount: A:0.50, C:0.29, G:0.01, T:0.20
Consensus pattern (15 bp):
AAAATCCTAAAATCC
Found at i:10195685 original size:9 final size:8
Alignment explanation
Indices: 10195590--10195699 Score: 65
Period size: 7 Copynumber: 13.9 Consensus size: 8
10195580 TCTTAGGTTT
10195590 CTAAAACTC
1 CTAAAA-TC
10195599 CTAAAATC
1 CTAAAATC
10195607 C-AAAATCC
1 CTAAAAT-C
10195615 CTTTAAAATC
1 C--TAAAATC
10195625 C-AAAATC
1 CTAAAATC
10195632 CTAAAATC
1 CTAAAATC
* *
10195640 C-GAAACC
1 CTAAAATC
10195647 CTTAAAATC
1 C-TAAAATC
*
10195656 C--AAACC
1 CTAAAATC
*
10195662 CCAAAATC
1 CTAAAATC
10195670 C--AAATC
1 CTAAAATC
10195676 CTTAAAATC
1 C-TAAAATC
10195685 C-AAAATCC
1 CTAAAAT-C
10195693 CTAAAAT
1 CTAAAAT
10195700 TCAAACCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 28
0.70 0.05 0.24
Matches are distributed among these distances:
6 11 0.14
7 22 0.27
8 19 0.23
9 22 0.27
10 2 0.02
11 5 0.06
ACGTcount: A:0.48, C:0.30, G:0.01, T:0.21
Consensus pattern (8 bp):
CTAAAATC
Found at i:10195713 original size:14 final size:14
Alignment explanation
Indices: 10195620--10195719 Score: 74
Period size: 15 Copynumber: 6.7 Consensus size: 14
10195610 AATCCCTTTA
* *
10195620 AAATCCAAAATCCTA
1 AAATCC-AAACCCTT
10195635 AAATCCGAAACCCTT
1 AAATCC-AAACCCTT
**
10195650 AAAATCCAAACCCCA
1 -AAATCCAAACCCTT
*
10195665 AAATCCAAATCCTT
1 AAATCCAAACCCTT
*
10195679 AAAATCCAAAATCCCTA
1 -AAATCC-AAA-CCCTT
*
10195696 AAATTCAAACCCTT
1 AAATCCAAACCCTT
*
10195710 AAATCAAAAC
1 AAATCCAAAC
10195720 TCCAAACCCT
Statistics
Matches: 67, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
14 23 0.34
15 27 0.40
16 14 0.21
17 3 0.04
ACGTcount: A:0.50, C:0.30, G:0.01, T:0.19
Consensus pattern (14 bp):
AAATCCAAACCCTT
Found at i:10195714 original size:45 final size:45
Alignment explanation
Indices: 10195619--10195707 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
10195609 AAATCCCTTT
*
10195619 AAAATCCAAAATCCTAAAATCCGAAACCCTTAAAATCCAAACCCC
1 AAAATCCAAAATCCTAAAATCCAAAACCCTTAAAATCCAAACCCC
*
10195664 AAAATCC-AAATCCTTAAAATCCAAAATCCC-TAAAATTCAAACCC
1 AAAATCCAAAATCC-TAAAATCCAAAA-CCCTTAAAATCCAAACCC
10195708 TTAAATCAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
44 6 0.15
45 31 0.77
46 3 0.08
ACGTcount: A:0.49, C:0.31, G:0.01, T:0.18
Consensus pattern (45 bp):
AAAATCCAAAATCCTAAAATCCAAAACCCTTAAAATCCAAACCCC
Found at i:10195735 original size:60 final size:62
Alignment explanation
Indices: 10195592--10195735 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 62
10195582 TTAGGTTTCT
* *
10195592 AAAACTCCTAAAATCCAAAATCCCTTTAAAATCCAAAATCCTAAAATCCGAAACCCTTAAAATC
1 AAAAC-CCCAAAACCCAAAAT-CCTTTAAAATCCAAAATCCTAAAATCCGAAACCCTTAAAATC
* * *
10195656 CAAACCCCAAAATCC-AAATCC-TTAAAATCCAAAATCCCTAAAATTC-AAACCCTT-AAATC
1 AAAACCCCAAAACCCAAAATCCTTTAAAATCCAAAAT-CCTAAAATCCGAAACCCTTAAAATC
*
10195715 AAAACTCC-AAACCCTAAAATC
1 AAAACCCCAAAACCC-AAAATC
10195736 TCCAAACTCT
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
58 5 0.07
59 11 0.15
60 27 0.38
61 11 0.15
62 4 0.06
63 9 0.13
64 4 0.06
ACGTcount: A:0.49, C:0.31, G:0.01, T:0.20
Consensus pattern (62 bp):
AAAACCCCAAAACCCAAAATCCTTTAAAATCCAAAATCCTAAAATCCGAAACCCTTAAAATC
Found at i:10195740 original size:16 final size:16
Alignment explanation
Indices: 10195618--10195751 Score: 61
Period size: 16 Copynumber: 8.4 Consensus size: 16
10195608 AAAATCCCTT
* *
10195618 TAAAATC-CAAAATCC
1 TAAAATCTCCAAACCC
*
10195633 TAAAATC-CGAAACCC
1 TAAAATCTCCAAACCC
10195648 TTAAAA--TCCAAACCC
1 -TAAAATCTCCAAACCC
* *
10195663 CAAAA--TCCAAATCCT
1 TAAAATCTCCAAA-CCC
*
10195678 TAAAATC-CAAAATCCC
1 TAAAATCTCCAAA-CCC
10195694 TAAAAT-T-CAAACCC
1 TAAAATCTCCAAACCC
*
10195708 TTAAATCAAAACTCCAAACCC
1 -T--A--AAATCTCCAAACCC
*
10195729 TAAAATCTCCAAACTC
1 TAAAATCTCCAAACCC
10195745 TAAAATC
1 TAAAATC
10195752 AAAACCCTAA
Statistics
Matches: 94, Mismatches: 12, Indels: 25
0.72 0.09 0.19
Matches are distributed among these distances:
14 13 0.14
15 30 0.32
16 37 0.39
17 1 0.01
18 1 0.01
19 3 0.03
20 2 0.02
21 7 0.07
ACGTcount: A:0.49, C:0.31, G:0.01, T:0.20
Consensus pattern (16 bp):
TAAAATCTCCAAACCC
Found at i:10195742 original size:37 final size:35
Alignment explanation
Indices: 10195691--10195764 Score: 96
Period size: 37 Copynumber: 2.1 Consensus size: 35
10195681 AATCCAAAAT
*
10195691 CCCTAAAATTCAAACCCTTAAATCAAAACTCC-AAA
1 CCCTAAAATTCAAACCCTAAAATCAAAAC-CCTAAA
*
10195726 CCCTAAAATCTCCAAACTCTAAAATCAAAACCCTAAA
1 CCCTAAAAT-T-CAAACCCTAAAATCAAAACCCTAAA
10195763 CC
1 CC
10195765 TTCCATATCC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 9 0.26
36 3 0.09
37 22 0.65
ACGTcount: A:0.47, C:0.34, G:0.00, T:0.19
Consensus pattern (35 bp):
CCCTAAAATTCAAACCCTAAAATCAAAACCCTAAA
Found at i:10195748 original size:51 final size:51
Alignment explanation
Indices: 10195663--10195759 Score: 119
Period size: 51 Copynumber: 1.9 Consensus size: 51
10195653 ATCCAAACCC
*
10195663 CAAAATCCAAATCCTTAAAATCCAAAATCCCTAAAATTC-AAACCCTTAAAT
1 CAAAATCCAAATCCCTAAAATCCAAAATCCCTAAAA-TCAAAACCCTTAAAT
* *
10195714 CAAAACTCCAAA-CCCTAAAATCTCCAAA-CTCTAAAATCAAAACCCT
1 CAAAA-TCCAAATCCCTAAAATC-CAAAATCCCTAAAATCAAAACCCT
10195760 AAACCTTCCA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
50 2 0.05
51 28 0.70
52 10 0.25
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (51 bp):
CAAAATCCAAATCCCTAAAATCCAAAATCCCTAAAATCAAAACCCTTAAAT
Found at i:10197449 original size:118 final size:118
Alignment explanation
Indices: 10197241--10197478 Score: 422
Period size: 118 Copynumber: 2.0 Consensus size: 118
10197231 GTTAGTAGCT
*
10197241 TATAATAGGTAAGGATCGGAGAACCTTACTAATCTATAATGGACGATGATGTAAGGAATAGTTTG
1 TATAATAGGTAAGGATCGGAGAACCTTACTAATCTATAATGGACGATGATGTAAGGAATAGTCTG
10197306 GGAACCGTTAGACGCATAAACCTTAACCCAGCATATCGTGAGCCATATGAAGC
66 GGAACCGTTAGACGCATAAACCTTAACCCAGCATATCGTGAGCCATATGAAGC
* * *
10197359 TATAATGGGTAAGGATCGGGGAACCTTACTAATCTATAATGGACGATGATGTGAGGAATAGTCTG
1 TATAATAGGTAAGGATCGGAGAACCTTACTAATCTATAATGGACGATGATGTAAGGAATAGTCTG
* *
10197424 GGAATCGTTAGACGTATAAACCTTAACCCAGCATATCGTGAGCCATATGAAGC
66 GGAACCGTTAGACGCATAAACCTTAACCCAGCATATCGTGAGCCATATGAAGC
10197477 TA
1 TA
10197479 ACCTAGGGTA
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
118 114 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (118 bp):
TATAATAGGTAAGGATCGGAGAACCTTACTAATCTATAATGGACGATGATGTAAGGAATAGTCTG
GGAACCGTTAGACGCATAAACCTTAACCCAGCATATCGTGAGCCATATGAAGC
Found at i:10203775 original size:33 final size:32
Alignment explanation
Indices: 10203730--10204072 Score: 399
Period size: 33 Copynumber: 10.6 Consensus size: 32
10203720 AATAAAAATA
*
10203730 AAATTTAAGCCCAGTTTATTTGGCCATCAATG
1 AAATTTAAGCCCAGTTTATCTGGCCATCAATG
10203762 AAACTTTAAGCCCAGTTTATCTGGCC-TCAAATG
1 AAA-TTTAAGCCCAGTTTATCTGGCCATC-AATG
*
10203795 AAGTTTTAAGCCCAGTTTATCTGGCC-TCAAATG
1 AA-ATTTAAGCCCAGTTTATCTGGCCATC-AATG
* * * *
10203828 AAGTTTTAAGCCCAATTTATTTGGCCATCAATA
1 AA-ATTTAAGCCCAGTTTATCTGGCCATCAATG
*
10203861 AAATTTAAGCCCAATTTATCTGGCCATCAATG
1 AAATTTAAGCCCAGTTTATCTGGCCATCAATG
*
10203893 AAGCTTTAAGCCCAGTTTATCTGGCCATCAATG
1 AA-ATTTAAGCCCAGTTTATCTGGCCATCAATG
*
10203926 AAATTTAAGCTCAGTTTATCTGGCC-TCAAATG
1 AAATTTAAGCCCAGTTTATCTGGCCATC-AATG
* **
10203958 AAGTTTTAAGTACAGTTTATCTGGCCATCAATG
1 AA-ATTTAAGCCCAGTTTATCTGGCCATCAATG
* *
10203991 ACA-TTAAGTCCAGTTTATCTGGCCATCAATG
1 AAATTTAAGCCCAGTTTATCTGGCCATCAATG
* * * *
10204022 ACATTTAAGTCCAGTTTAGCTGGCCTTCAAT-
1 AAATTTAAGCCCAGTTTATCTGGCCATCAATG
*
10204053 AGAATTTAAGTCCAGTTTAT
1 A-AATTTAAGCCCAGTTTAT
10204073 TTAGCCCTAA
Statistics
Matches: 279, Mismatches: 22, Indels: 20
0.87 0.07 0.06
Matches are distributed among these distances:
31 33 0.12
32 102 0.37
33 140 0.50
34 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (32 bp):
AAATTTAAGCCCAGTTTATCTGGCCATCAATG
Found at i:10203893 original size:65 final size:65
Alignment explanation
Indices: 10203726--10204072 Score: 418
Period size: 65 Copynumber: 5.4 Consensus size: 65
10203716 TAAAAATAAA
* *
10203726 AATAAAATTTAAGCCCAGTTTATTTGGCCATCAATGAAACTTTAAGCCCAGTTTATCTGGCC-TC
1 AATAAAATTTAAGCCCAGTTTATCTGGCCATCAATGAAGCTTTAAGCCCAGTTTATCTGGCCATC
** * * *
10203790 AAATGAAGTTTTAAGCCCAGTTTATCTGGCC-TCAAATGAAGTTTTAAGCCCAATTTATTTGGCC
1 -AAT-AAAATTTAAGCCCAGTTTATCTGGCCATC-AATGAAGCTTTAAGCCCAGTTTATCTGGCC
10203854 ATC
63 ATC
*
10203857 AATAAAATTTAAGCCCAATTTATCTGGCCATCAATGAAGCTTTAAGCCCAGTTTATCTGGCCATC
1 AATAAAATTTAAGCCCAGTTTATCTGGCCATCAATGAAGCTTTAAGCCCAGTTTATCTGGCCATC
* * * **
10203922 AATGAAATTTAAGCTCAGTTTATCTGGCC-TCAAATGAAGTTTTAAGTACAGTTTATCTGGCCAT
1 AATAAAATTTAAGCCCAGTTTATCTGGCCATC-AATGAAGCTTTAAGCCCAGTTTATCTGGCCAT
10203986 C
65 C
* * * * * *
10203987 AATGACA-TTAAGTCCAGTTTATCTGGCCATCAATG-A-CATTTAAGTCCAGTTTAGCTGGCCTT
1 AATAAAATTTAAGCCCAGTTTATCTGGCCATCAATGAAGC-TTTAAGCCCAGTTTATCTGGCCAT
10204049 C
65 C
* *
10204050 AATAGAATTTAAGTCCAGTTTAT
1 AATAAAATTTAAGCCCAGTTTAT
10204073 TTAGCCCTAA
Statistics
Matches: 245, Mismatches: 29, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
63 27 0.11
64 40 0.16
65 122 0.50
66 54 0.22
67 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (65 bp):
AATAAAATTTAAGCCCAGTTTATCTGGCCATCAATGAAGCTTTAAGCCCAGTTTATCTGGCCATC
Found at i:10204812 original size:87 final size:87
Alignment explanation
Indices: 10204656--10204850 Score: 273
Period size: 87 Copynumber: 2.2 Consensus size: 87
10204646 TCTTGATTTC
* * * * * *
10204656 TAAGACCTCCAGGCATGATTTTGATTCGCGATGTTATCCCAATCGATTTTTTAATTTTGATTTAC
1 TAAGACCTTCGGGCATGATTTCGATTCGCGATGTTATCCCAATCGATTCTTTAATTTGGACTTAC
10204721 GGTGTTATCCCAGTCGATTCTG
66 GGTGTTATCCCAGTCGATTCTG
* * * **
10204743 TAAGACCTTCGGGCATGATTTCGATTTGCGGTGTTATCCCGATCGATTCTTTAATTTGGACTTGT
1 TAAGACCTTCGGGCATGATTTCGATTCGCGATGTTATCCCAATCGATTCTTTAATTTGGACTTAC
10204808 GGTGTTATCCCAGTCGATTCTG
66 GGTGTTATCCCAGTCGATTCTG
* *
10204830 TAAGACTTTCGGACATGATTT
1 TAAGACCTTCGGGCATGATTT
10204851 TTCAGACCTC
Statistics
Matches: 95, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 95 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (87 bp):
TAAGACCTTCGGGCATGATTTCGATTCGCGATGTTATCCCAATCGATTCTTTAATTTGGACTTAC
GGTGTTATCCCAGTCGATTCTG
Found at i:10204936 original size:109 final size:109
Alignment explanation
Indices: 10204745--10204944 Score: 267
Period size: 109 Copynumber: 1.8 Consensus size: 109
10204735 CGATTCTGTA
* * * * ** **
10204745 AGACCTTCGGGCATGATTTCGATTTGCGGTGTTATCCCGATCGATTCTTTAATTTGGACTTGTGG
1 AGACCTCCAGGCATGATTTCGATTCGCGGTGTTATCCCGATCGATTCATTAATTTCAACTTACGG
*
10204810 TGTTATCCCAGTCGATTCTGTAAGACTTTCGGACATGATTTTTC
66 TGTTATCCCAGTCGATTCTATAAGACTTTCGGACATGATTTTTC
*
10204854 AGACCTCCAGGCATGATTTCGATTCGCGGTGTTATCCCGATTGATTCATT-ATTCTCAACTTACG
1 AGACCTCCAGGCATGATTTCGATTCGCGGTGTTATCCCGATCGATTCATTAATT-TCAACTTACG
* **
10204918 GTGTTGTCCCCTTCGATTCTATAAGAC
65 GTGTTATCCCAGTCGATTCTATAAGAC
10204945 CTCCGGGCAT
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
108 3 0.04
109 74 0.96
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.38
Consensus pattern (109 bp):
AGACCTCCAGGCATGATTTCGATTCGCGGTGTTATCCCGATCGATTCATTAATTTCAACTTACGG
TGTTATCCCAGTCGATTCTATAAGACTTTCGGACATGATTTTTC
Done.